BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1458 (PAB1458) DE:Hypothetical protein
(355 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75050 hypothetical protein PAB1458 - Pyrococcus abyssi (st... 685 0.0
pir||F71110 hypothetical protein PH0653 - Pyrococcus horikoshii ... 578 e-164
pir||H69094 hypothetical protein MTH1703 - Methanobacterium ther... 145 1e-33
pir||H75049 hypothetical protein PAB1459 - Pyrococcus abyssi (st... 97 4e-19
pir||C69231 conserved hypothetical protein MTH980 - Methanobacte... 92 7e-18
pir||G71110 hypothetical protein PH0654 - Pyrococcus horikoshii ... 89 8e-17
>pir||A75050 hypothetical protein PAB1458 - Pyrococcus abyssi (strain Orsay)
>gi|5458807|emb|CAB50294.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 355
Score = 685 bits (1748), Expect = 0.0
Identities = 355/355 (100%), Positives = 355/355 (100%)
Query: 1 MPRILDGFVRFLERLGGKTIEIAETPIRKLPSKELTIKERLELLKKMREEIEKEKEKEEE 60
MPRILDGFVRFLERLGGKTIEIAETPIRKLPSKELTIKERLELLKKMREEIEKEKEKEEE
Sbjct: 1 MPRILDGFVRFLERLGGKTIEIAETPIRKLPSKELTIKERLELLKKMREEIEKEKEKEEE 60
Query: 61 ELIEESVEWREKEIKEPFSQRLAKGVLKYFRGPVESLSGSIRGLEEDLYRANIMMSKELY 120
ELIEESVEWREKEIKEPFSQRLAKGVLKYFRGPVESLSGSIRGLEEDLYRANIMMSKELY
Sbjct: 61 ELIEESVEWREKEIKEPFSQRLAKGVLKYFRGPVESLSGSIRGLEEDLYRANIMMSKELY 120
Query: 121 VALMLAVGLISGVFAFLFGIIIEMPIDMSLLIGVAGFLLGFMYMRFYPKSVWRRRVEEVE 180
VALMLAVGLISGVFAFLFGIIIEMPIDMSLLIGVAGFLLGFMYMRFYPKSVWRRRVEEVE
Sbjct: 121 VALMLAVGLISGVFAFLFGIIIEMPIDMSLLIGVAGFLLGFMYMRFYPKSVWRRRVEEVE 180
Query: 181 RALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEMHKGSSFEDALASFE 240
RALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEMHKGSSFEDALASFE
Sbjct: 181 RALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEMHKGSSFEDALASFE 240
Query: 241 EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKINGISFVYMF 300
EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKINGISFVYMF
Sbjct: 241 EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKINGISFVYMF 300
Query: 301 MTVVMPTLLIVVIIAGSIFAKRLIIDMAGLAILFLFGFPALSLIIIVMIKRAEPR 355
MTVVMPTLLIVVIIAGSIFAKRLIIDMAGLAILFLFGFPALSLIIIVMIKRAEPR
Sbjct: 301 MTVVMPTLLIVVIIAGSIFAKRLIIDMAGLAILFLFGFPALSLIIIVMIKRAEPR 355
>pir||F71110 hypothetical protein PH0653 - Pyrococcus horikoshii
>gi|3257061|dbj|BAA29744.1| (AP000003) 358aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 358
Score = 578 bits (1474), Expect = e-164
Identities = 280/355 (78%), Positives = 326/355 (90%)
Query: 1 MPRILDGFVRFLERLGGKTIEIAETPIRKLPSKELTIKERLELLKKMREEIEKEKEKEEE 60
+P +++GF+RFLE+LGGKTIEIAE P+R++PS+ELT++ERLELLK+MREEIEKEKE EEE
Sbjct: 4 VPGVVEGFLRFLEKLGGKTIEIAEAPVRRMPSRELTVRERLELLKRMREEIEKEKESEEE 63
Query: 61 ELIEESVEWREKEIKEPFSQRLAKGVLKYFRGPVESLSGSIRGLEEDLYRANIMMSKELY 120
+ IEE++EWREK I+ P S R+A+ LKYFRGPVESLS SI+GL+EDLYRANI+M KE Y
Sbjct: 64 KFIEEAIEWREKTIQRPLSDRIAESFLKYFRGPVESLSKSIKGLDEDLYRANILMPKEKY 123
Query: 121 VALMLAVGLISGVFAFLFGIIIEMPIDMSLLIGVAGFLLGFMYMRFYPKSVWRRRVEEVE 180
VALMLAVG+IS + F+ G+II +PIDMS+L+GV GF+ GF+YMRFYPKSVW+RRVEEVE
Sbjct: 124 VALMLAVGIISAILTFIVGLIIALPIDMSMLLGVLGFIFGFIYMRFYPKSVWKRRVEEVE 183
Query: 181 RALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEMHKGSSFEDALASFE 240
+ALPYVLRHMASLLNAGIGLAE MVSV+K+DYGV+SEEF M+VQEMHKGSSFEDAL FE
Sbjct: 184 KALPYVLRHMASLLNAGIGLAEAMVSVSKADYGVVSEEFAMVVQEMHKGSSFEDALTKFE 243
Query: 241 EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKINGISFVYMF 300
EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKINGISFVYMF
Sbjct: 244 EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKINGISFVYMF 303
Query: 301 MTVVMPTLLIVVIIAGSIFAKRLIIDMAGLAILFLFGFPALSLIIIVMIKRAEPR 355
MTVVMPTLLIVVI+AGSIF KRL+I+++G+ ++FL GFP LS III+MIKRAEPR
Sbjct: 304 MTVVMPTLLIVVILAGSIFMKRLVINLSGMIVIFLLGFPTLSFIIIMMIKRAEPR 358
>pir||H69094 hypothetical protein MTH1703 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622834|gb|AAB86175.1| (AE000927)
unknown [Methanobacterium thermoautotrophicum]
Length = 359
Score = 145 bits (361), Expect = 1e-33
Identities = 79/233 (33%), Positives = 138/233 (58%), Gaps = 2/233 (0%)
Query: 123 LMLAVGLISGVFAFLFGIIIEMPIDMSLLIGVAGFLLGFMYMRFYPKSVWRRRVEEVERA 182
L++ +G SG + +++ I++ L + +A + + + F P +R E R
Sbjct: 128 LIMILGGGSGAVLLVVMVLLGFGIEIGLAMMLAVLFMAIIII-FLPNLQRGKRSSEASRE 186
Query: 183 LPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEMHKGSSFEDALASFEEK 242
LP+ LR MA+ L +G+GL ++M SVA S YG +SEEF ++E+ G + E+AL +
Sbjct: 187 LPFALRQMATELKSGLGLHDSMRSVAMSGYGALSEEFARTLEEIKYGETTENALIEMSNR 246
Query: 243 MKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKINGISFVYMFMT 302
++SD + R V QI R L GG+L+ L +AD+ ++E R+KL DY QK+N + +YMF+
Sbjct: 247 IESDGLKRAVYQITRTLNSGGDLSKTLNVIADDIAYEMRMKLKDYSQKLNSFTMIYMFLA 306
Query: 303 VVMPTLLIVVIIAGSIFAKRLIIDMAGLAILFLFGFPALSLIIIVMIKRAEPR 355
++ P + +V+++A + ++ +A + +++LF FP L + MIKR EP+
Sbjct: 307 ILGPVIFLVMLLAAATVMGSVLPPIA-IIMIYLFLFPMLVGFMAFMIKRLEPK 358
>pir||H75049 hypothetical protein PAB1459 - Pyrococcus abyssi (strain Orsay)
>gi|5458806|emb|CAB50293.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 308
Score = 96.7 bits (237), Expect = 4e-19
Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 10/178 (5%)
Query: 108 LYRANIMMSKELYVALMLAVGLISGVFAF-LFGIIIEMPIDMSLLIGVAGFLLGFMYMRF 166
LY A I Y+ + + +G+I G AF LFG + S LI G LGF+Y+
Sbjct: 34 LYSAGIDFKASEYITISIIMGVIGGAVAFILFGTL------SSALIAFLGVFLGFLYV-- 85
Query: 167 YPKSVWRRRVEEVERALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEM 226
YP +R+EE+E+ALP ++A L AG+ +E + +A + +G ++ EFR V EM
Sbjct: 86 YPNFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFSEALEELATAKFGALTAEFRRTVAEM 145
Query: 227 HKGSSFEDALASFE-EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIK 283
+G DAL +F KS +V R + ++ AL+ G +AD+L + ++ RIK
Sbjct: 146 KRGRPTVDALRAFALRNKKSPIVYRSMMIVIEALERGAPMADVLVSVGNDVREILRIK 203
>pir||C69231 conserved hypothetical protein MTH980 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622079|gb|AAB85476.1| (AE000871) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 313
Score = 92.4 bits (226), Expect = 7e-18
Identities = 54/211 (25%), Positives = 108/211 (50%), Gaps = 3/211 (1%)
Query: 104 LEEDLYRANIMMSKELYVALMLAVGLISGVFAFLFGIIIEMPIDMSLLIGVAGFLLGFMY 163
L+E L R + + V L G I V A + ++ + + +++L+G F L +
Sbjct: 27 LQETLIRTGLYVKASEIVTLAFLGGAIFAVLASVVAALLGLSVILAVLVG---FSLPSIM 83
Query: 164 MRFYPKSVWRRRVEEVERALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMV 223
+ Y + RRV+ +E++ P LR +ASLL AG+GL + V++ G + +E + V
Sbjct: 84 LGAYIFIMMERRVDAIEQSTPDFLRQIASLLRAGVGLESALEDVSRQGEGPLYDELKRAV 143
Query: 224 QEMHKGSSFEDALASFEEKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIK 283
E+ G +F++A+ S E++KS + R + IL + GG+L+D++ +A++ +K
Sbjct: 144 IEIKIGRTFDEAILSMSERLKSKNLDRTFRMILEGRRAGGSLSDVIETVAEDLRAVLALK 203
Query: 284 LMDYVQKINGISFVYMFMTVVMPTLLIVVII 314
+ + F+ + + P L ++++
Sbjct: 204 RERKANVMMSVMFLVVAAIIAAPFALGMIMV 234
>pir||G71110 hypothetical protein PH0654 - Pyrococcus horikoshii
>gi|3257062|dbj|BAA29745.1| (AP000003) 308aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 308
Score = 88.9 bits (217), Expect = 8e-17
Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 10/178 (5%)
Query: 108 LYRANIMMSKELYVALMLAVGLISGVFAFLFGIIIEMPIDMSLLIGVAGFLLGFM-YMRF 166
LY A I Y+ + L G+I GV AF+F SL I FL+ F+ ++
Sbjct: 34 LYSAGIDFKASEYIVISLIFGVIGGVLAFIF--------TDSLKILTISFLIVFLTFLYL 85
Query: 167 YPKSVWRRRVEEVERALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEM 226
YP RR+EE+ERALP ++A L AG+ +E + ++ + +G ++ EF V EM
Sbjct: 86 YPNFRIVRRIEEMERALPDAFFYLAGSLRAGVSFSEALEELSTAKFGALTREFMRTVAEM 145
Query: 227 HKGSSFEDALASFE-EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIK 283
+G DAL +F KS ++ R + ++ AL+ G +AD+L + ++ RIK
Sbjct: 146 KRGRPTVDALRAFALRNKKSLVIYRSMMIVIEALERGAPMADVLIAVGNDVREILRIK 203
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.325 0.143 0.391
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113842837
Number of Sequences: 2977
Number of extensions: 4616822
Number of successful extensions: 67889
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 67879
Number of HSP's gapped (non-prelim): 6
length of query: 355
length of database: 189,106,746
effective HSP length: 57
effective length of query: 298
effective length of database: 154,992,987
effective search space: 46187910126
effective search space used: 46187910126
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 165 (68.7 bits)