BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1458 (PAB1458) DE:Hypothetical protein
         (355 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75050 hypothetical protein PAB1458 - Pyrococcus abyssi (st...   685  0.0
pir||F71110 hypothetical protein PH0653 - Pyrococcus horikoshii ...   578  e-164
pir||H69094 hypothetical protein MTH1703 - Methanobacterium ther...   145  1e-33
pir||H75049 hypothetical protein PAB1459 - Pyrococcus abyssi (st...    97  4e-19
pir||C69231 conserved hypothetical protein MTH980 - Methanobacte...    92  7e-18
pir||G71110 hypothetical protein PH0654 - Pyrococcus horikoshii ...    89  8e-17

>pir||A75050 hypothetical protein PAB1458 - Pyrococcus abyssi (strain Orsay)
           >gi|5458807|emb|CAB50294.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 355
           
 Score =  685 bits (1748), Expect = 0.0
 Identities = 355/355 (100%), Positives = 355/355 (100%)

Query: 1   MPRILDGFVRFLERLGGKTIEIAETPIRKLPSKELTIKERLELLKKMREEIEKEKEKEEE 60
           MPRILDGFVRFLERLGGKTIEIAETPIRKLPSKELTIKERLELLKKMREEIEKEKEKEEE
Sbjct: 1   MPRILDGFVRFLERLGGKTIEIAETPIRKLPSKELTIKERLELLKKMREEIEKEKEKEEE 60

Query: 61  ELIEESVEWREKEIKEPFSQRLAKGVLKYFRGPVESLSGSIRGLEEDLYRANIMMSKELY 120
           ELIEESVEWREKEIKEPFSQRLAKGVLKYFRGPVESLSGSIRGLEEDLYRANIMMSKELY
Sbjct: 61  ELIEESVEWREKEIKEPFSQRLAKGVLKYFRGPVESLSGSIRGLEEDLYRANIMMSKELY 120

Query: 121 VALMLAVGLISGVFAFLFGIIIEMPIDMSLLIGVAGFLLGFMYMRFYPKSVWRRRVEEVE 180
           VALMLAVGLISGVFAFLFGIIIEMPIDMSLLIGVAGFLLGFMYMRFYPKSVWRRRVEEVE
Sbjct: 121 VALMLAVGLISGVFAFLFGIIIEMPIDMSLLIGVAGFLLGFMYMRFYPKSVWRRRVEEVE 180

Query: 181 RALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEMHKGSSFEDALASFE 240
           RALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEMHKGSSFEDALASFE
Sbjct: 181 RALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEMHKGSSFEDALASFE 240

Query: 241 EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKINGISFVYMF 300
           EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKINGISFVYMF
Sbjct: 241 EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKINGISFVYMF 300

Query: 301 MTVVMPTLLIVVIIAGSIFAKRLIIDMAGLAILFLFGFPALSLIIIVMIKRAEPR 355
           MTVVMPTLLIVVIIAGSIFAKRLIIDMAGLAILFLFGFPALSLIIIVMIKRAEPR
Sbjct: 301 MTVVMPTLLIVVIIAGSIFAKRLIIDMAGLAILFLFGFPALSLIIIVMIKRAEPR 355


>pir||F71110 hypothetical protein PH0653 - Pyrococcus horikoshii
           >gi|3257061|dbj|BAA29744.1| (AP000003) 358aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 358
           
 Score =  578 bits (1474), Expect = e-164
 Identities = 280/355 (78%), Positives = 326/355 (90%)

Query: 1   MPRILDGFVRFLERLGGKTIEIAETPIRKLPSKELTIKERLELLKKMREEIEKEKEKEEE 60
           +P +++GF+RFLE+LGGKTIEIAE P+R++PS+ELT++ERLELLK+MREEIEKEKE EEE
Sbjct: 4   VPGVVEGFLRFLEKLGGKTIEIAEAPVRRMPSRELTVRERLELLKRMREEIEKEKESEEE 63

Query: 61  ELIEESVEWREKEIKEPFSQRLAKGVLKYFRGPVESLSGSIRGLEEDLYRANIMMSKELY 120
           + IEE++EWREK I+ P S R+A+  LKYFRGPVESLS SI+GL+EDLYRANI+M KE Y
Sbjct: 64  KFIEEAIEWREKTIQRPLSDRIAESFLKYFRGPVESLSKSIKGLDEDLYRANILMPKEKY 123

Query: 121 VALMLAVGLISGVFAFLFGIIIEMPIDMSLLIGVAGFLLGFMYMRFYPKSVWRRRVEEVE 180
           VALMLAVG+IS +  F+ G+II +PIDMS+L+GV GF+ GF+YMRFYPKSVW+RRVEEVE
Sbjct: 124 VALMLAVGIISAILTFIVGLIIALPIDMSMLLGVLGFIFGFIYMRFYPKSVWKRRVEEVE 183

Query: 181 RALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEMHKGSSFEDALASFE 240
           +ALPYVLRHMASLLNAGIGLAE MVSV+K+DYGV+SEEF M+VQEMHKGSSFEDAL  FE
Sbjct: 184 KALPYVLRHMASLLNAGIGLAEAMVSVSKADYGVVSEEFAMVVQEMHKGSSFEDALTKFE 243

Query: 241 EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKINGISFVYMF 300
           EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKINGISFVYMF
Sbjct: 244 EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKINGISFVYMF 303

Query: 301 MTVVMPTLLIVVIIAGSIFAKRLIIDMAGLAILFLFGFPALSLIIIVMIKRAEPR 355
           MTVVMPTLLIVVI+AGSIF KRL+I+++G+ ++FL GFP LS III+MIKRAEPR
Sbjct: 304 MTVVMPTLLIVVILAGSIFMKRLVINLSGMIVIFLLGFPTLSFIIIMMIKRAEPR 358


>pir||H69094 hypothetical protein MTH1703 - Methanobacterium thermoautotrophicum
           (strain Delta H) >gi|2622834|gb|AAB86175.1| (AE000927)
           unknown [Methanobacterium thermoautotrophicum]
           Length = 359
           
 Score =  145 bits (361), Expect = 1e-33
 Identities = 79/233 (33%), Positives = 138/233 (58%), Gaps = 2/233 (0%)

Query: 123 LMLAVGLISGVFAFLFGIIIEMPIDMSLLIGVAGFLLGFMYMRFYPKSVWRRRVEEVERA 182
           L++ +G  SG    +  +++   I++ L + +A   +  + + F P     +R  E  R 
Sbjct: 128 LIMILGGGSGAVLLVVMVLLGFGIEIGLAMMLAVLFMAIIII-FLPNLQRGKRSSEASRE 186

Query: 183 LPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEMHKGSSFEDALASFEEK 242
           LP+ LR MA+ L +G+GL ++M SVA S YG +SEEF   ++E+  G + E+AL     +
Sbjct: 187 LPFALRQMATELKSGLGLHDSMRSVAMSGYGALSEEFARTLEEIKYGETTENALIEMSNR 246

Query: 243 MKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKINGISFVYMFMT 302
           ++SD + R V QI R L  GG+L+  L  +AD+ ++E R+KL DY QK+N  + +YMF+ 
Sbjct: 247 IESDGLKRAVYQITRTLNSGGDLSKTLNVIADDIAYEMRMKLKDYSQKLNSFTMIYMFLA 306

Query: 303 VVMPTLLIVVIIAGSIFAKRLIIDMAGLAILFLFGFPALSLIIIVMIKRAEPR 355
           ++ P + +V+++A +     ++  +A + +++LF FP L   +  MIKR EP+
Sbjct: 307 ILGPVIFLVMLLAAATVMGSVLPPIA-IIMIYLFLFPMLVGFMAFMIKRLEPK 358


>pir||H75049 hypothetical protein PAB1459 - Pyrococcus abyssi (strain Orsay)
           >gi|5458806|emb|CAB50293.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 308
           
 Score = 96.7 bits (237), Expect = 4e-19
 Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 10/178 (5%)

Query: 108 LYRANIMMSKELYVALMLAVGLISGVFAF-LFGIIIEMPIDMSLLIGVAGFLLGFMYMRF 166
           LY A I      Y+ + + +G+I G  AF LFG +       S LI   G  LGF+Y+  
Sbjct: 34  LYSAGIDFKASEYITISIIMGVIGGAVAFILFGTL------SSALIAFLGVFLGFLYV-- 85

Query: 167 YPKSVWRRRVEEVERALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEM 226
           YP     +R+EE+E+ALP    ++A  L AG+  +E +  +A + +G ++ EFR  V EM
Sbjct: 86  YPNFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFSEALEELATAKFGALTAEFRRTVAEM 145

Query: 227 HKGSSFEDALASFE-EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIK 283
            +G    DAL +F     KS +V R +  ++ AL+ G  +AD+L  + ++     RIK
Sbjct: 146 KRGRPTVDALRAFALRNKKSPIVYRSMMIVIEALERGAPMADVLVSVGNDVREILRIK 203


>pir||C69231 conserved hypothetical protein MTH980 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622079|gb|AAB85476.1| (AE000871) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 313
           
 Score = 92.4 bits (226), Expect = 7e-18
 Identities = 54/211 (25%), Positives = 108/211 (50%), Gaps = 3/211 (1%)

Query: 104 LEEDLYRANIMMSKELYVALMLAVGLISGVFAFLFGIIIEMPIDMSLLIGVAGFLLGFMY 163
           L+E L R  + +     V L    G I  V A +   ++ + + +++L+G   F L  + 
Sbjct: 27  LQETLIRTGLYVKASEIVTLAFLGGAIFAVLASVVAALLGLSVILAVLVG---FSLPSIM 83

Query: 164 MRFYPKSVWRRRVEEVERALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMV 223
           +  Y   +  RRV+ +E++ P  LR +ASLL AG+GL   +  V++   G + +E +  V
Sbjct: 84  LGAYIFIMMERRVDAIEQSTPDFLRQIASLLRAGVGLESALEDVSRQGEGPLYDELKRAV 143

Query: 224 QEMHKGSSFEDALASFEEKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIK 283
            E+  G +F++A+ S  E++KS  + R  + IL   + GG+L+D++  +A++      +K
Sbjct: 144 IEIKIGRTFDEAILSMSERLKSKNLDRTFRMILEGRRAGGSLSDVIETVAEDLRAVLALK 203

Query: 284 LMDYVQKINGISFVYMFMTVVMPTLLIVVII 314
                  +  + F+ +   +  P  L ++++
Sbjct: 204 RERKANVMMSVMFLVVAAIIAAPFALGMIMV 234


>pir||G71110 hypothetical protein PH0654 - Pyrococcus horikoshii
           >gi|3257062|dbj|BAA29745.1| (AP000003) 308aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 308
           
 Score = 88.9 bits (217), Expect = 8e-17
 Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 10/178 (5%)

Query: 108 LYRANIMMSKELYVALMLAVGLISGVFAFLFGIIIEMPIDMSLLIGVAGFLLGFM-YMRF 166
           LY A I      Y+ + L  G+I GV AF+F          SL I    FL+ F+ ++  
Sbjct: 34  LYSAGIDFKASEYIVISLIFGVIGGVLAFIF--------TDSLKILTISFLIVFLTFLYL 85

Query: 167 YPKSVWRRRVEEVERALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEM 226
           YP     RR+EE+ERALP    ++A  L AG+  +E +  ++ + +G ++ EF   V EM
Sbjct: 86  YPNFRIVRRIEEMERALPDAFFYLAGSLRAGVSFSEALEELSTAKFGALTREFMRTVAEM 145

Query: 227 HKGSSFEDALASFE-EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIK 283
            +G    DAL +F     KS ++ R +  ++ AL+ G  +AD+L  + ++     RIK
Sbjct: 146 KRGRPTVDALRAFALRNKKSLVIYRSMMIVIEALERGAPMADVLIAVGNDVREILRIK 203


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.143    0.391 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113842837
Number of Sequences: 2977
Number of extensions: 4616822
Number of successful extensions: 67889
Number of sequences better than 1.0e-10: 6
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 67879
Number of HSP's gapped (non-prelim): 6
length of query: 355
length of database: 189,106,746
effective HSP length: 57
effective length of query: 298
effective length of database: 154,992,987
effective search space: 46187910126
effective search space used: 46187910126
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 165 (68.7 bits)