BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1459 (PAB1459) DE:Hypothetical protein
(308 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75049 hypothetical protein PAB1459 - Pyrococcus abyssi (st... 594 e-169
pir||G71110 hypothetical protein PH0654 - Pyrococcus horikoshii ... 480 e-134
pir||C69231 conserved hypothetical protein MTH980 - Methanobacte... 135 7e-31
pir||A75050 hypothetical protein PAB1458 - Pyrococcus abyssi (st... 97 3e-19
pir||F71110 hypothetical protein PH0653 - Pyrococcus horikoshii ... 94 2e-18
pir||H69094 hypothetical protein MTH1703 - Methanobacterium ther... 71 2e-11
>pir||H75049 hypothetical protein PAB1459 - Pyrococcus abyssi (strain Orsay)
>gi|5458806|emb|CAB50293.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 308
Score = 594 bits (1516), Expect = e-169
Identities = 308/308 (100%), Positives = 308/308 (100%)
Query: 1 MRDLAREGPISSRFIAAIERIIPKRYLKRYDLLLYSAGIDFKASEYITISIIMGVIGGAV 60
MRDLAREGPISSRFIAAIERIIPKRYLKRYDLLLYSAGIDFKASEYITISIIMGVIGGAV
Sbjct: 1 MRDLAREGPISSRFIAAIERIIPKRYLKRYDLLLYSAGIDFKASEYITISIIMGVIGGAV 60
Query: 61 AFILFGTLSSALIAFLGVFLGFLYVYPNFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFS 120
AFILFGTLSSALIAFLGVFLGFLYVYPNFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFS
Sbjct: 61 AFILFGTLSSALIAFLGVFLGFLYVYPNFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFS 120
Query: 121 EALEELATAKFGALTAEFRRTVAEMKRGRPTVDALRAFALRNKKSPIVYRSMMIVIEALE 180
EALEELATAKFGALTAEFRRTVAEMKRGRPTVDALRAFALRNKKSPIVYRSMMIVIEALE
Sbjct: 121 EALEELATAKFGALTAEFRRTVAEMKRGRPTVDALRAFALRNKKSPIVYRSMMIVIEALE 180
Query: 181 RGAPMADVLVSVGNDVREILRIKKERKASTGMQMMFFLTSGGFVGPMIVAIVSRISEFVN 240
RGAPMADVLVSVGNDVREILRIKKERKASTGMQMMFFLTSGGFVGPMIVAIVSRISEFVN
Sbjct: 181 RGAPMADVLVSVGNDVREILRIKKERKASTGMQMMFFLTSGGFVGPMIVAIVSRISEFVN 240
Query: 241 TSGMQVQLPSGELKLILWLFSVIQGFVTGVGIGVIREGKFSAGLRYGVLIAIMAGSVFWL 300
TSGMQVQLPSGELKLILWLFSVIQGFVTGVGIGVIREGKFSAGLRYGVLIAIMAGSVFWL
Sbjct: 241 TSGMQVQLPSGELKLILWLFSVIQGFVTGVGIGVIREGKFSAGLRYGVLIAIMAGSVFWL 300
Query: 301 GTRFNIGF 308
GTRFNIGF
Sbjct: 301 GTRFNIGF 308
>pir||G71110 hypothetical protein PH0654 - Pyrococcus horikoshii
>gi|3257062|dbj|BAA29745.1| (AP000003) 308aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 308
Score = 480 bits (1222), Expect = e-134
Identities = 237/307 (77%), Positives = 274/307 (89%)
Query: 1 MRDLAREGPISSRFIAAIERIIPKRYLKRYDLLLYSAGIDFKASEYITISIIMGVIGGAV 60
M++LA+E +SSR IE ++PK+YLKRYDLLLYSAGIDFKASEYI IS+I GVIGG +
Sbjct: 1 MKELAKEVVVSSRLAKVIESVVPKKYLKRYDLLLYSAGIDFKASEYIVISLIFGVIGGVL 60
Query: 61 AFILFGTLSSALIAFLGVFLGFLYVYPNFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFS 120
AFI +L I+FL VFL FLY+YPNFRI +RIEEME+ALPDAFFYLAGSLRAGVSFS
Sbjct: 61 AFIFTDSLKILTISFLIVFLTFLYLYPNFRIVRRIEEMERALPDAFFYLAGSLRAGVSFS 120
Query: 121 EALEELATAKFGALTAEFRRTVAEMKRGRPTVDALRAFALRNKKSPIVYRSMMIVIEALE 180
EALEEL+TAKFGALT EF RTVAEMKRGRPTVDALRAFALRNKKS ++YRSMMIVIEALE
Sbjct: 121 EALEELSTAKFGALTREFMRTVAEMKRGRPTVDALRAFALRNKKSLVIYRSMMIVIEALE 180
Query: 181 RGAPMADVLVSVGNDVREILRIKKERKASTGMQMMFFLTSGGFVGPMIVAIVSRISEFVN 240
RGAPMADVL++VGNDVREILRIKKERKASTGMQMMFFLTSGGFVGP IVAIVS+ISEF+
Sbjct: 181 RGAPMADVLIAVGNDVREILRIKKERKASTGMQMMFFLTSGGFVGPFIVAIVSKISEFIA 240
Query: 241 TSGMQVQLPSGELKLILWLFSVIQGFVTGVGIGVIREGKFSAGLRYGVLIAIMAGSVFWL 300
+SG +Q+P +L+++LWLFSVIQGFVTG+GIGVIREGKFS+G+R+G+++A+MAG VFW+
Sbjct: 241 SSGTGIQIPVSDLRVVLWLFSVIQGFVTGIGIGVIREGKFSSGMRFGIIVALMAGFVFWI 300
Query: 301 GTRFNIG 307
G R IG
Sbjct: 301 GLRVGIG 307
>pir||C69231 conserved hypothetical protein MTH980 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622079|gb|AAB85476.1| (AE000871) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 313
Score = 135 bits (336), Expect = 7e-31
Identities = 87/290 (30%), Positives = 154/290 (53%), Gaps = 10/290 (3%)
Query: 17 AIERIIPKRYLKRYDLLLYSAGIDFKASEYITISIIMGVIGGAVAFILFGTLSSALIAFL 76
A+E IIP R L R L G+ KASE +T++ + G I +A ++ L ++I L
Sbjct: 14 ALENIIPDRLLLRLQETLIRTGLYVKASEIVTLAFLGGAIFAVLASVVAALLGLSVI--L 71
Query: 77 GVFLGF------LYVYPNFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFSEALEELATAK 130
V +GF L Y + +R++ +E++ PD +A LRAGV ALE+++
Sbjct: 72 AVLVGFSLPSIMLGAYIFIMMERRVDAIEQSTPDFLRQIASLLRAGVGLESALEDVSRQG 131
Query: 131 FGALTAEFRRTVAEMKRGRPTVDALRAFALRNKKSPIVYRSMMIVIEALERGAPMADVLV 190
G L E +R V E+K GR +A+ + + R KS + R+ +++E G ++DV+
Sbjct: 132 EGPLYDELKRAVIEIKIGRTFDEAILSMSER-LKSKNLDRTFRMILEGRRAGGSLSDVIE 190
Query: 191 SVGNDVREILRIKKERKASTGMQMMFFLTSGGFVGPMIVAIVSRISEFVNTSGMQVQLPS 250
+V D+R +L +K+ERKA+ M +MF + + P + ++ S F+ + G +
Sbjct: 191 TVAEDLRAVLALKRERKANVMMSVMFLVVAAIIAAPFALGMIMVYSGFMESVGKPNPI-L 249
Query: 251 GELKLILWLFSVIQGFVTGVGIGVIREGKFSAGLRYGVLIAIMAGSVFWL 300
G K+ + +I + G+ IG+I G G+++ V ++IMA ++F++
Sbjct: 250 GAAKIAASGYIIIHSIIAGLLIGIIMYGSARKGVKFAVPLSIMAYAIFYV 299
>pir||A75050 hypothetical protein PAB1458 - Pyrococcus abyssi (strain Orsay)
>gi|5458807|emb|CAB50294.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 355
Score = 96.7 bits (237), Expect = 3e-19
Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 10/178 (5%)
Query: 34 LYSAGIDFKASEYITISIIMGVIGGAVAFILFGTL------SSALIAFLGVFLGFLYV-- 85
LY A I Y+ + + +G+I G AF LFG + S LI G LGF+Y+
Sbjct: 108 LYRANIMMSKELYVALMLAVGLISGVFAF-LFGIIIEMPIDMSLLIGVAGFLLGFMYMRF 166
Query: 86 YPNFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFSEALEELATAKFGALTAEFRRTVAEM 145
YP +R+EE+E+ALP ++A L AG+ +E + +A + +G ++ EFR V EM
Sbjct: 167 YPKSVWRRRVEEVERALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEM 226
Query: 146 KRGRPTVDALRAFALRNKKSPIVYRSMMIVIEALERGAPMADVLVSVGNDVREILRIK 203
+G DAL +F KS +V R + ++ AL+ G +AD+L + ++ RIK
Sbjct: 227 HKGSSFEDALASFE-EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIK 283
>pir||F71110 hypothetical protein PH0653 - Pyrococcus horikoshii
>gi|3257061|dbj|BAA29744.1| (AP000003) 358aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 358
Score = 94.0 bits (230), Expect = 2e-18
Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 8/184 (4%)
Query: 27 LKRYDLLLYSAGIDFKASEYITISIIMGVIGGAVAFILFGTLS-----SALIAFLGVFLG 81
+K D LY A I +Y+ + + +G+I + FI+ ++ S L+ LG G
Sbjct: 104 IKGLDEDLYRANILMPKEKYVALMLAVGIISAILTFIVGLIIALPIDMSMLLGVLGFIFG 163
Query: 82 FLYV--YPNFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFSEALEELATAKFGALTAEFR 139
F+Y+ YP +R+EE+EKALP ++A L AG+ +EA+ ++ A +G ++ EF
Sbjct: 164 FIYMRFYPKSVWKRRVEEVEKALPYVLRHMASLLNAGIGLAEAMVSVSKADYGVVSEEFA 223
Query: 140 RTVAEMKRGRPTVDALRAFALRNKKSPIVYRSMMIVIEALERGAPMADVLVSVGNDVREI 199
V EM +G DAL F KS +V R + ++ AL+ G +AD+L + ++
Sbjct: 224 MVVQEMHKGSSFEDALTKFE-EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFE 282
Query: 200 LRIK 203
RIK
Sbjct: 283 YRIK 286
>pir||H69094 hypothetical protein MTH1703 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622834|gb|AAB86175.1| (AE000927)
unknown [Methanobacterium thermoautotrophicum]
Length = 359
Score = 70.6 bits (170), Expect = 2e-11
Identities = 58/226 (25%), Positives = 111/226 (48%), Gaps = 16/226 (7%)
Query: 51 IIMGVIGGAVAFILFGTLSSALIAFLGVFLGFLYV------YPNFRIAKRIEEMEKALPD 104
+I+G GAV ++ L + L + L L++ PN + KR E + LP
Sbjct: 130 MILGGGSGAVLLVVMVLLGFGIEIGLAMMLAVLFMAIIIIFLPNLQRGKRSSEASRELPF 189
Query: 105 AFFYLAGSLRAGVSFSEALEELATAKFGALTAEFRRTVAEMKRGRPTVDALRAFALRNKK 164
A +A L++G+ +++ +A + +GAL+ EF RT+ E+K G T +AL + R +
Sbjct: 190 ALRQMATELKSGLGLHDSMRSVAMSGYGALSEEFARTLEEIKYGETTENALIEMSNR-IE 248
Query: 165 SPIVYRSMMIVIEALERGAPMADVLVSVGNDVREILRIKKE---RKASTGMQMMFFLTSG 221
S + R++ + L G ++ L + +D+ +R+K + +K ++ + FL
Sbjct: 249 SDGLKRAVYQITRTLNSGGDLSKTLNVIADDIAYEMRMKLKDYSQKLNSFTMIYMFL--- 305
Query: 222 GFVGPMIVAIVSRISEFVNTSGMQVQLPSGELKLILWLFSVIQGFV 267
+GP+I ++ + V S V P + + L+LF ++ GF+
Sbjct: 306 AILGPVIFLVMLLAAATVMGS---VLPPIAIIMIYLFLFPMLVGFM 348
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.144 0.405
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97449483
Number of Sequences: 2977
Number of extensions: 3741701
Number of successful extensions: 14149
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 14140
Number of HSP's gapped (non-prelim): 6
length of query: 308
length of database: 189,106,746
effective HSP length: 55
effective length of query: 253
effective length of database: 156,189,961
effective search space: 39516060133
effective search space used: 39516060133
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 165 (68.7 bits)