BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1459 (PAB1459) DE:Hypothetical protein
         (308 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75049 hypothetical protein PAB1459 - Pyrococcus abyssi (st...   594  e-169
pir||G71110 hypothetical protein PH0654 - Pyrococcus horikoshii ...   480  e-134
pir||C69231 conserved hypothetical protein MTH980 - Methanobacte...   135  7e-31
pir||A75050 hypothetical protein PAB1458 - Pyrococcus abyssi (st...    97  3e-19
pir||F71110 hypothetical protein PH0653 - Pyrococcus horikoshii ...    94  2e-18
pir||H69094 hypothetical protein MTH1703 - Methanobacterium ther...    71  2e-11

>pir||H75049 hypothetical protein PAB1459 - Pyrococcus abyssi (strain Orsay)
           >gi|5458806|emb|CAB50293.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 308
           
 Score =  594 bits (1516), Expect = e-169
 Identities = 308/308 (100%), Positives = 308/308 (100%)

Query: 1   MRDLAREGPISSRFIAAIERIIPKRYLKRYDLLLYSAGIDFKASEYITISIIMGVIGGAV 60
           MRDLAREGPISSRFIAAIERIIPKRYLKRYDLLLYSAGIDFKASEYITISIIMGVIGGAV
Sbjct: 1   MRDLAREGPISSRFIAAIERIIPKRYLKRYDLLLYSAGIDFKASEYITISIIMGVIGGAV 60

Query: 61  AFILFGTLSSALIAFLGVFLGFLYVYPNFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFS 120
           AFILFGTLSSALIAFLGVFLGFLYVYPNFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFS
Sbjct: 61  AFILFGTLSSALIAFLGVFLGFLYVYPNFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFS 120

Query: 121 EALEELATAKFGALTAEFRRTVAEMKRGRPTVDALRAFALRNKKSPIVYRSMMIVIEALE 180
           EALEELATAKFGALTAEFRRTVAEMKRGRPTVDALRAFALRNKKSPIVYRSMMIVIEALE
Sbjct: 121 EALEELATAKFGALTAEFRRTVAEMKRGRPTVDALRAFALRNKKSPIVYRSMMIVIEALE 180

Query: 181 RGAPMADVLVSVGNDVREILRIKKERKASTGMQMMFFLTSGGFVGPMIVAIVSRISEFVN 240
           RGAPMADVLVSVGNDVREILRIKKERKASTGMQMMFFLTSGGFVGPMIVAIVSRISEFVN
Sbjct: 181 RGAPMADVLVSVGNDVREILRIKKERKASTGMQMMFFLTSGGFVGPMIVAIVSRISEFVN 240

Query: 241 TSGMQVQLPSGELKLILWLFSVIQGFVTGVGIGVIREGKFSAGLRYGVLIAIMAGSVFWL 300
           TSGMQVQLPSGELKLILWLFSVIQGFVTGVGIGVIREGKFSAGLRYGVLIAIMAGSVFWL
Sbjct: 241 TSGMQVQLPSGELKLILWLFSVIQGFVTGVGIGVIREGKFSAGLRYGVLIAIMAGSVFWL 300

Query: 301 GTRFNIGF 308
           GTRFNIGF
Sbjct: 301 GTRFNIGF 308


>pir||G71110 hypothetical protein PH0654 - Pyrococcus horikoshii
           >gi|3257062|dbj|BAA29745.1| (AP000003) 308aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 308
           
 Score =  480 bits (1222), Expect = e-134
 Identities = 237/307 (77%), Positives = 274/307 (89%)

Query: 1   MRDLAREGPISSRFIAAIERIIPKRYLKRYDLLLYSAGIDFKASEYITISIIMGVIGGAV 60
           M++LA+E  +SSR    IE ++PK+YLKRYDLLLYSAGIDFKASEYI IS+I GVIGG +
Sbjct: 1   MKELAKEVVVSSRLAKVIESVVPKKYLKRYDLLLYSAGIDFKASEYIVISLIFGVIGGVL 60

Query: 61  AFILFGTLSSALIAFLGVFLGFLYVYPNFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFS 120
           AFI   +L    I+FL VFL FLY+YPNFRI +RIEEME+ALPDAFFYLAGSLRAGVSFS
Sbjct: 61  AFIFTDSLKILTISFLIVFLTFLYLYPNFRIVRRIEEMERALPDAFFYLAGSLRAGVSFS 120

Query: 121 EALEELATAKFGALTAEFRRTVAEMKRGRPTVDALRAFALRNKKSPIVYRSMMIVIEALE 180
           EALEEL+TAKFGALT EF RTVAEMKRGRPTVDALRAFALRNKKS ++YRSMMIVIEALE
Sbjct: 121 EALEELSTAKFGALTREFMRTVAEMKRGRPTVDALRAFALRNKKSLVIYRSMMIVIEALE 180

Query: 181 RGAPMADVLVSVGNDVREILRIKKERKASTGMQMMFFLTSGGFVGPMIVAIVSRISEFVN 240
           RGAPMADVL++VGNDVREILRIKKERKASTGMQMMFFLTSGGFVGP IVAIVS+ISEF+ 
Sbjct: 181 RGAPMADVLIAVGNDVREILRIKKERKASTGMQMMFFLTSGGFVGPFIVAIVSKISEFIA 240

Query: 241 TSGMQVQLPSGELKLILWLFSVIQGFVTGVGIGVIREGKFSAGLRYGVLIAIMAGSVFWL 300
           +SG  +Q+P  +L+++LWLFSVIQGFVTG+GIGVIREGKFS+G+R+G+++A+MAG VFW+
Sbjct: 241 SSGTGIQIPVSDLRVVLWLFSVIQGFVTGIGIGVIREGKFSSGMRFGIIVALMAGFVFWI 300

Query: 301 GTRFNIG 307
           G R  IG
Sbjct: 301 GLRVGIG 307


>pir||C69231 conserved hypothetical protein MTH980 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622079|gb|AAB85476.1| (AE000871) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 313
           
 Score =  135 bits (336), Expect = 7e-31
 Identities = 87/290 (30%), Positives = 154/290 (53%), Gaps = 10/290 (3%)

Query: 17  AIERIIPKRYLKRYDLLLYSAGIDFKASEYITISIIMGVIGGAVAFILFGTLSSALIAFL 76
           A+E IIP R L R    L   G+  KASE +T++ + G I   +A ++   L  ++I  L
Sbjct: 14  ALENIIPDRLLLRLQETLIRTGLYVKASEIVTLAFLGGAIFAVLASVVAALLGLSVI--L 71

Query: 77  GVFLGF------LYVYPNFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFSEALEELATAK 130
            V +GF      L  Y    + +R++ +E++ PD    +A  LRAGV    ALE+++   
Sbjct: 72  AVLVGFSLPSIMLGAYIFIMMERRVDAIEQSTPDFLRQIASLLRAGVGLESALEDVSRQG 131

Query: 131 FGALTAEFRRTVAEMKRGRPTVDALRAFALRNKKSPIVYRSMMIVIEALERGAPMADVLV 190
            G L  E +R V E+K GR   +A+ + + R  KS  + R+  +++E    G  ++DV+ 
Sbjct: 132 EGPLYDELKRAVIEIKIGRTFDEAILSMSER-LKSKNLDRTFRMILEGRRAGGSLSDVIE 190

Query: 191 SVGNDVREILRIKKERKASTGMQMMFFLTSGGFVGPMIVAIVSRISEFVNTSGMQVQLPS 250
           +V  D+R +L +K+ERKA+  M +MF + +     P  + ++   S F+ + G    +  
Sbjct: 191 TVAEDLRAVLALKRERKANVMMSVMFLVVAAIIAAPFALGMIMVYSGFMESVGKPNPI-L 249

Query: 251 GELKLILWLFSVIQGFVTGVGIGVIREGKFSAGLRYGVLIAIMAGSVFWL 300
           G  K+    + +I   + G+ IG+I  G    G+++ V ++IMA ++F++
Sbjct: 250 GAAKIAASGYIIIHSIIAGLLIGIIMYGSARKGVKFAVPLSIMAYAIFYV 299


>pir||A75050 hypothetical protein PAB1458 - Pyrococcus abyssi (strain Orsay)
           >gi|5458807|emb|CAB50294.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 355
           
 Score = 96.7 bits (237), Expect = 3e-19
 Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 10/178 (5%)

Query: 34  LYSAGIDFKASEYITISIIMGVIGGAVAFILFGTL------SSALIAFLGVFLGFLYV-- 85
           LY A I      Y+ + + +G+I G  AF LFG +       S LI   G  LGF+Y+  
Sbjct: 108 LYRANIMMSKELYVALMLAVGLISGVFAF-LFGIIIEMPIDMSLLIGVAGFLLGFMYMRF 166

Query: 86  YPNFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFSEALEELATAKFGALTAEFRRTVAEM 145
           YP     +R+EE+E+ALP    ++A  L AG+  +E +  +A + +G ++ EFR  V EM
Sbjct: 167 YPKSVWRRRVEEVERALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEM 226

Query: 146 KRGRPTVDALRAFALRNKKSPIVYRSMMIVIEALERGAPMADVLVSVGNDVREILRIK 203
            +G    DAL +F     KS +V R +  ++ AL+ G  +AD+L  + ++     RIK
Sbjct: 227 HKGSSFEDALASFE-EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIK 283


>pir||F71110 hypothetical protein PH0653 - Pyrococcus horikoshii
           >gi|3257061|dbj|BAA29744.1| (AP000003) 358aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 358
           
 Score = 94.0 bits (230), Expect = 2e-18
 Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 8/184 (4%)

Query: 27  LKRYDLLLYSAGIDFKASEYITISIIMGVIGGAVAFILFGTLS-----SALIAFLGVFLG 81
           +K  D  LY A I     +Y+ + + +G+I   + FI+   ++     S L+  LG   G
Sbjct: 104 IKGLDEDLYRANILMPKEKYVALMLAVGIISAILTFIVGLIIALPIDMSMLLGVLGFIFG 163

Query: 82  FLYV--YPNFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFSEALEELATAKFGALTAEFR 139
           F+Y+  YP     +R+EE+EKALP    ++A  L AG+  +EA+  ++ A +G ++ EF 
Sbjct: 164 FIYMRFYPKSVWKRRVEEVEKALPYVLRHMASLLNAGIGLAEAMVSVSKADYGVVSEEFA 223

Query: 140 RTVAEMKRGRPTVDALRAFALRNKKSPIVYRSMMIVIEALERGAPMADVLVSVGNDVREI 199
             V EM +G    DAL  F     KS +V R +  ++ AL+ G  +AD+L  + ++    
Sbjct: 224 MVVQEMHKGSSFEDALTKFE-EKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFE 282

Query: 200 LRIK 203
            RIK
Sbjct: 283 YRIK 286


>pir||H69094 hypothetical protein MTH1703 - Methanobacterium thermoautotrophicum
           (strain Delta H) >gi|2622834|gb|AAB86175.1| (AE000927)
           unknown [Methanobacterium thermoautotrophicum]
           Length = 359
           
 Score = 70.6 bits (170), Expect = 2e-11
 Identities = 58/226 (25%), Positives = 111/226 (48%), Gaps = 16/226 (7%)

Query: 51  IIMGVIGGAVAFILFGTLSSALIAFLGVFLGFLYV------YPNFRIAKRIEEMEKALPD 104
           +I+G   GAV  ++   L   +   L + L  L++       PN +  KR  E  + LP 
Sbjct: 130 MILGGGSGAVLLVVMVLLGFGIEIGLAMMLAVLFMAIIIIFLPNLQRGKRSSEASRELPF 189

Query: 105 AFFYLAGSLRAGVSFSEALEELATAKFGALTAEFRRTVAEMKRGRPTVDALRAFALRNKK 164
           A   +A  L++G+   +++  +A + +GAL+ EF RT+ E+K G  T +AL   + R  +
Sbjct: 190 ALRQMATELKSGLGLHDSMRSVAMSGYGALSEEFARTLEEIKYGETTENALIEMSNR-IE 248

Query: 165 SPIVYRSMMIVIEALERGAPMADVLVSVGNDVREILRIKKE---RKASTGMQMMFFLTSG 221
           S  + R++  +   L  G  ++  L  + +D+   +R+K +   +K ++   +  FL   
Sbjct: 249 SDGLKRAVYQITRTLNSGGDLSKTLNVIADDIAYEMRMKLKDYSQKLNSFTMIYMFL--- 305

Query: 222 GFVGPMIVAIVSRISEFVNTSGMQVQLPSGELKLILWLFSVIQGFV 267
             +GP+I  ++   +  V  S   V  P   + + L+LF ++ GF+
Sbjct: 306 AILGPVIFLVMLLAAATVMGS---VLPPIAIIMIYLFLFPMLVGFM 348


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.328    0.144    0.405 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97449483
Number of Sequences: 2977
Number of extensions: 3741701
Number of successful extensions: 14149
Number of sequences better than 1.0e-10: 6
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 14140
Number of HSP's gapped (non-prelim): 6
length of query: 308
length of database: 189,106,746
effective HSP length: 55
effective length of query: 253
effective length of database: 156,189,961
effective search space: 39516060133
effective search space used: 39516060133
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 165 (68.7 bits)