BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1466 (PAB1466) DE:Hypothetical protein
         (185 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75048 hypothetical protein PAB1466 - Pyrococcus abyssi (st...   359  1e-98
pir||C71112 hypothetical protein PH0666 - Pyrococcus horikoshii ...   303  1e-81

>pir||F75048 hypothetical protein PAB1466 - Pyrococcus abyssi (strain Orsay)
           >gi|5458796|emb|CAB50283.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 185
           
 Score =  359 bits (912), Expect = 1e-98
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MDIEVLRRLLERELSSDELTEIDEEFYKDLASFRKALELNAERHEERGEDVEKRLYLAQL 60
           MDIEVLRRLLERELSSDELTEIDEEFYKDLASFRKALELNAERHEERGEDVEKRLYLAQL
Sbjct: 1   MDIEVLRRLLERELSSDELTEIDEEFYKDLASFRKALELNAERHEERGEDVEKRLYLAQL 60

Query: 61  SLVQGIVREILKIRLHKIVDMAFEGVPRNLVGDEKKIFAILTAFINGEPISVEAEEKVEE 120
           SLVQGIVREILKIRLHKIVDMAFEGVPRNLVGDEKKIFAILTAFINGEPISVEAEEKVEE
Sbjct: 61  SLVQGIVREILKIRLHKIVDMAFEGVPRNLVGDEKKIFAILTAFINGEPISVEAEEKVEE 120

Query: 121 EVKVERKPTPGFLELYLLKIDVPRIIDEELREHGPFKAGDLVTLPRSIGNVLVKRDAADR 180
           EVKVERKPTPGFLELYLLKIDVPRIIDEELREHGPFKAGDLVTLPRSIGNVLVKRDAADR
Sbjct: 121 EVKVERKPTPGFLELYLLKIDVPRIIDEELREHGPFKAGDLVTLPRSIGNVLVKRDAADR 180

Query: 181 IVIRL 185
           IVIRL
Sbjct: 181 IVIRL 185


>pir||C71112 hypothetical protein PH0666 - Pyrococcus horikoshii
           >gi|3257074|dbj|BAA29757.1| (AP000003) 189aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 189
           
 Score =  303 bits (767), Expect = 1e-81
 Identities = 153/185 (82%), Positives = 168/185 (90%)

Query: 1   MDIEVLRRLLERELSSDELTEIDEEFYKDLASFRKALELNAERHEERGEDVEKRLYLAQL 60
           MDIEVLRRLLERELSS+ELTEIDEEFY+DLASFRKALELNAER+EERGED+EKRLYLAQL
Sbjct: 5   MDIEVLRRLLERELSSEELTEIDEEFYRDLASFRKALELNAERYEERGEDIEKRLYLAQL 64

Query: 61  SLVQGIVREILKIRLHKIVDMAFEGVPRNLVGDEKKIFAILTAFINGEPISVEAEEKVEE 120
           SLVQ I REILKIRLHKIVDMAFEGVP+NLVGDEKKIFA+L+AFINGEPIS+E  E   +
Sbjct: 65  SLVQSIAREILKIRLHKIVDMAFEGVPKNLVGDEKKIFAVLSAFINGEPISIETTEVEVK 124

Query: 121 EVKVERKPTPGFLELYLLKIDVPRIIDEELREHGPFKAGDLVTLPRSIGNVLVKRDAADR 180
           E KVE K   GFLELYLLK D+PRIIDE L E+GPFKAGDLVTLPRSIGNVLVKR+ A++
Sbjct: 125 EEKVESKTPSGFLELYLLKSDIPRIIDENLNEYGPFKAGDLVTLPRSIGNVLVKREVAEK 184

Query: 181 IVIRL 185
           I IR+
Sbjct: 185 ITIRI 189


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.142    0.380 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63844635
Number of Sequences: 2977
Number of extensions: 2743749
Number of successful extensions: 8497
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8495
Number of HSP's gapped (non-prelim): 2
length of query: 185
length of database: 189,106,746
effective HSP length: 57
effective length of query: 128
effective length of database: 154,992,987
effective search space: 19839102336
effective search space used: 19839102336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)