BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1467 1330547 1330185 -121 !not a gene!
         (121 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71112 hypothetical protein PH0669 - Pyrococcus horikoshii ...   146  1e-34

>pir||F71112 hypothetical protein PH0669 - Pyrococcus horikoshii
           >gi|3257077|dbj|BAA29760.1| (AP000003) 122aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 122
           
 Score =  146 bits (364), Expect = 1e-34
 Identities = 74/122 (60%), Positives = 80/122 (64%), Gaps = 1/122 (0%)

Query: 1   MMNLWSPEGRRNPRTGVQIPAPPP-VHFXXXXXXXXXXXXXXXXXKGTFKSFSLRTTLTS 59
           MMNLWSPEGRRNPRTGVQIPAPPP  +F                 +GTF+S  LRTTLTS
Sbjct: 1   MMNLWSPEGRRNPRTGVQIPAPPPSFYFSNATLTATSAITSIGSMRGTFRSSCLRTTLTS 60

Query: 60  VQPAIMHSAPLSSSFLAIFMXXXXXXXXXXALTPSYIPFITSSCSSSLGIRTSIPYLENS 119
           V PAIMHSAPLSS   A+            ALTPSYIP ITS CSSS+G+  S PYLENS
Sbjct: 61  VHPAIMHSAPLSSRIFAVLSSSSLPSFKFPALTPSYIPLITSFCSSSVGVMISTPYLENS 120

Query: 120 FS 121
           FS
Sbjct: 121 FS 122


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.132    0.398 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34527269
Number of Sequences: 2977
Number of extensions: 838596
Number of successful extensions: 1532
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1530
Number of HSP's gapped (non-prelim): 1
length of query: 121
length of database: 189,106,746
effective HSP length: 53
effective length of query: 68
effective length of database: 157,386,935
effective search space: 10702311580
effective search space used: 10702311580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 160 (66.7 bits)