BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1474 (porD) DE:PYRUVATE SYNTHASE SUBUNIT PORD (EC 1.2.7.1)
(PYRUVATE OXIDOREDUCTASE
(105 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75046 pyruvate synthase (EC 1.2.7.1) delta chain PAB1474 -... 231 2e-60
pir||C71114 probable ferredoxin oxidoreductase delta subunit - P... 225 1e-58
sp|O58415|PORD_PYRHO PYRUVATE SYNTHASE SUBUNIT PORD (PYRUVATE OX... 225 1e-58
sp|Q51803|PORD_PYRFU PYRUVATE SYNTHASE SUBUNIT PORD (PYRUVATE OX... 220 4e-57
sp|O58412|VORD_PYRHO KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORD... 122 2e-27
sp|Q51800|VORD_PYRFU KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORD... 120 4e-27
pir||C75047 2-ketovalerate oxidoreductase chain vord (EC 1.-.-.-... 119 1e-26
sp|Q57716|PORD_METJA PYRUVATE SYNTHASE SUBUNIT PORD (PYRUVATE OX... 115 2e-25
gb|AAF91263.1|AF230199_5 (AF230199) pyruvate oxidoreductase gamm... 104 3e-22
pir||G69099 probable pyruvate synthase (EC 1.2.7.1) gamma chain ... 102 1e-21
sp|P56815|PORD_METTH PYRUVATE SYNTHASE SUBUNIT PORD (PYRUVATE OX... 100 5e-21
gb|AAK41455.1| Pyruvate synthase delta chain (Pyruvic-ferredoxin... 96 1e-19
sp|Q56316|PORD_THEMA PYRUVATE SYNTHASE SUBUNIT PORD (PYRUVATE OX... 94 4e-19
gb|AAD35110.1|AE001690_4 (AE001690) pyruvate ferredoxin oxidored... 94 4e-19
emb|CAC11766.1| (AL445064) pyruvate ferredoxin oxidoreductase, d... 90 1e-17
gb|AAK42868.1| Pyruvate synthase delta chain (Pyruvic-ferredoxin... 82 3e-15
gi|11499290 pyruvate ferredoxin oxidoreductase, subunit delta (p... 75 4e-13
pir||E64658 pyruvate ferredoxin oxidoreductase, delta subunit - ... 71 3e-12
gi|11499636 2-ketoisovalerate ferredoxin oxidoreductase, subunit... 71 5e-12
gb|AAK42307.1| Pyruvate synthase delta chain (Pyruvic-ferredoxin... 67 6e-11
pir||S74040 pyruvate synthase delta chain - Sulfolobus solfatari... 67 6e-11
>pir||H75046 pyruvate synthase (EC 1.2.7.1) delta chain PAB1474 - Pyrococcus
abyssi (strain Orsay) >gi|5458782|emb|CAB50269.1|
(AJ248287) PYRUVATE SYNTHASE SUBUNIT PORD (EC 1.2.7.1)
(PYRUVATE OXIDOREDUCTASE [Pyrococcus abyssi]
Length = 105
Score = 231 bits (583), Expect = 2e-60
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MAESPFKADIERAQKELTEKMTPGAIAYIPGSSVINKTGSWRVFRPEFKKDKCVRCFLCY 60
MAESPFKADIERAQKELTEKMTPGAIAYIPGSSVINKTGSWRVFRPEFKKDKCVRCFLCY
Sbjct: 1 MAESPFKADIERAQKELTEKMTPGAIAYIPGSSVINKTGSWRVFRPEFKKDKCVRCFLCY 60
Query: 61 IYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPTNAIEMVREVK 105
IYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPTNAIEMVREVK
Sbjct: 61 IYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPTNAIEMVREVK 105
>pir||C71114 probable ferredoxin oxidoreductase delta subunit - Pyrococcus
horikoshii >gi|3257090|dbj|BAA29773.1| (AP000003) 108aa
long hypothetical ferredoxin oxidoreductase delta
subunit [Pyrococcus horikoshii]
Length = 108
Score = 225 bits (568), Expect = 1e-58
Identities = 102/105 (97%), Positives = 103/105 (97%)
Query: 1 MAESPFKADIERAQKELTEKMTPGAIAYIPGSSVINKTGSWRVFRPEFKKDKCVRCFLCY 60
MAESPFKADIERAQKELTEKMTPGAIAYIPGSSVINKTGSWRVF+PEF KDKCVRCFLCY
Sbjct: 4 MAESPFKADIERAQKELTEKMTPGAIAYIPGSSVINKTGSWRVFKPEFHKDKCVRCFLCY 63
Query: 61 IYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPTNAIEMVREVK 105
IYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPT AIEMVREVK
Sbjct: 64 IYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPTKAIEMVREVK 108
>sp|O58415|PORD_PYRHO PYRUVATE SYNTHASE SUBUNIT PORD (PYRUVATE OXIDOREDUCTASE DELTA
CHAIN) (POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE DELTA
SUBUNIT)
Length = 105
Score = 225 bits (568), Expect = 1e-58
Identities = 102/105 (97%), Positives = 103/105 (97%)
Query: 1 MAESPFKADIERAQKELTEKMTPGAIAYIPGSSVINKTGSWRVFRPEFKKDKCVRCFLCY 60
MAESPFKADIERAQKELTEKMTPGAIAYIPGSSVINKTGSWRVF+PEF KDKCVRCFLCY
Sbjct: 1 MAESPFKADIERAQKELTEKMTPGAIAYIPGSSVINKTGSWRVFKPEFHKDKCVRCFLCY 60
Query: 61 IYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPTNAIEMVREVK 105
IYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPT AIEMVREVK
Sbjct: 61 IYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPTKAIEMVREVK 105
>sp|Q51803|PORD_PYRFU PYRUVATE SYNTHASE SUBUNIT PORD (PYRUVATE OXIDOREDUCTASE DELTA
CHAIN) (POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE DELTA
SUBUNIT) >gi|11249863|pir||T45087 pyruvate synthase (EC
1.2.7.1) delta chain [imported] - Pyrococcus furiosus
>gi|1197362|emb|CAA59504.1| (X85250) pyuvate ferredoxin
oxidoreductase [Pyrococcus furiosus]
Length = 105
Score = 220 bits (555), Expect = 4e-57
Identities = 98/105 (93%), Positives = 102/105 (96%)
Query: 1 MAESPFKADIERAQKELTEKMTPGAIAYIPGSSVINKTGSWRVFRPEFKKDKCVRCFLCY 60
MAESPFKADIERAQKEL+EKMTPGAI YIPGSSVINKTGSWRVF+PEF +DKCVRC+LCY
Sbjct: 1 MAESPFKADIERAQKELSEKMTPGAIVYIPGSSVINKTGSWRVFKPEFNRDKCVRCYLCY 60
Query: 61 IYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPTNAIEMVREVK 105
IYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPT AIEMVREVK
Sbjct: 61 IYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPTKAIEMVREVK 105
>sp|O58412|VORD_PYRHO KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORD (VOR) (2-OXOISOVALERATE
OXIDOREDUCTASE DELTA CHAIN) (2-OXOISOVALERATE-FERREDOXIN
OXIDOREDUCTASE DELTA SUBUNIT) >gi|7430777|pir||H71113
probable ferredoxin oxidoreductase delta subunit -
Pyrococcus horikoshii >gi|3257087|dbj|BAA29770.1|
(AP000003) 105aa long hypothetical ferredoxin
oxidoreductase delta subunit [Pyrococcus horikoshii]
Length = 105
Score = 122 bits (302), Expect = 2e-27
Identities = 52/97 (53%), Positives = 67/97 (68%), Gaps = 6/97 (6%)
Query: 15 KELTEKMTPGAIAYIP------GSSVINKTGSWRVFRPEFKKDKCVRCFLCYIYCPEPAI 68
KE + +TP ++ P G +++N TG WR F P + KCV+C++C+ YCPEPAI
Sbjct: 9 KEEAKPITPKSVDEYPEAPVSLGITLVNFTGDWRTFMPVIDESKCVKCYICWKYCPEPAI 68
Query: 69 YLDEEGYPVFDYDYCKGCGICANECPTNAIEMVREVK 105
Y+ E+G+ DYDYCKGCGICANECPT AI MVRE K
Sbjct: 69 YIKEDGFVAIDYDYCKGCGICANECPTKAITMVREEK 105
>sp|Q51800|VORD_PYRFU KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORD (VOR) (2-OXOISOVALERATE
OXIDOREDUCTASE DELTA CHAIN) (2-OXOISOVALERATE-FERREDOXIN
OXIDOREDUCTASE DELTA SUBUNIT) >gi|11249861|pir||T45084
pyruvate synthase (EC 1.2.7.1) delta-2 chain [imported]
- Pyrococcus furiosus >gi|1197359|emb|CAA59501.1|
(X85250) 2-ketovalerate ferredoxin oxidoreductase
delta-2 [Pyrococcus furiosus]
Length = 105
Score = 120 bits (299), Expect = 4e-27
Identities = 45/75 (60%), Positives = 60/75 (80%)
Query: 31 GSSVINKTGSWRVFRPEFKKDKCVRCFLCYIYCPEPAIYLDEEGYPVFDYDYCKGCGICA 90
G++++N TG WR F+P ++KCV+C++C+ YCPEPAIY+ +GY DYDYCKGCGICA
Sbjct: 31 GTTLVNPTGDWRTFKPVVNEEKCVKCYICWKYCPEPAIYIKPDGYVAIDYDYCKGCGICA 90
Query: 91 NECPTNAIEMVREVK 105
NECPT AI M++E K
Sbjct: 91 NECPTKAITMIKEEK 105
>pir||C75047 2-ketovalerate oxidoreductase chain vord (EC 1.-.-.-) (vor) PAB1471
- Pyrococcus abyssi (strain Orsay)
>gi|5458785|emb|CAB50272.1| (AJ248287) 2-KETOVALERATE
OXIDOREDUCTASE SUBUNIT VORD (EC 1.-.-.-) (VOR)
[Pyrococcus abyssi]
Length = 105
Score = 119 bits (295), Expect = 1e-26
Identities = 50/97 (51%), Positives = 67/97 (68%), Gaps = 6/97 (6%)
Query: 15 KELTEKMTPGAIAYIP------GSSVINKTGSWRVFRPEFKKDKCVRCFLCYIYCPEPAI 68
KE ++P ++ P G++++N TG WR F P + KCV+C++C+ +CPEPAI
Sbjct: 9 KEEARVISPKSVDEYPEAPITLGTTLVNFTGDWRTFMPVIDESKCVKCYICWKFCPEPAI 68
Query: 69 YLDEEGYPVFDYDYCKGCGICANECPTNAIEMVREVK 105
Y+ E+G+ DYDYCKGCGICANECPT AI MVRE K
Sbjct: 69 YIKEDGFVAIDYDYCKGCGICANECPTKAITMVREEK 105
>sp|Q57716|PORD_METJA PYRUVATE SYNTHASE SUBUNIT PORD (PYRUVATE OXIDOREDUCTASE DELTA
CHAIN) (POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE DELTA
SUBUNIT) >gi|2127894|pir||E64333 ferredoxin 2[4Fe-4S]
MJ0268 - Methanococcus jannaschii
>gi|1499049|gb|AAB98255.1| (U67482) pyruvate ferredoxin
oxidoreductase, subunit delta (porD) [Methanococcus
jannaschii]
Length = 86
Score = 115 bits (284), Expect = 2e-25
Identities = 52/85 (61%), Positives = 59/85 (69%)
Query: 21 MTPGAIAYIPGSSVINKTGSWRVFRPEFKKDKCVRCFLCYIYCPEPAIYLDEEGYPVFDY 80
+T AI Y PG+S+ NKTG+WR FRP +KCV+C CYI+CPE AI DE G DY
Sbjct: 2 VTIAAIIYEPGNSIKNKTGTWRTFRPILDNEKCVKCENCYIFCPEGAIQEDENGNFKIDY 61
Query: 81 DYCKGCGICANECPTNAIEMVREVK 105
DYCKGC IC NECP NAI VRE K
Sbjct: 62 DYCKGCLICMNECPVNAITKVREEK 86
>gb|AAF91263.1|AF230199_5 (AF230199) pyruvate oxidoreductase gamma subunit [Methanococcus
maripaludis]
Length = 85
Score = 104 bits (258), Expect = 3e-22
Identities = 48/82 (58%), Positives = 56/82 (67%), Gaps = 1/82 (1%)
Query: 24 GAIAYIPGSSVINKTGSWRVFRPEFKKDKCVRCFLCYIYCPEPAIYLDEEGYPVFDYDYC 83
G I Y PGSS NKTGSWRVF+P +DKCV+C CYI+CPE I +++G DYDYC
Sbjct: 5 GTIIYEPGSSAKNKTGSWRVFKPVLDQDKCVKCENCYIFCPEGCIQ-EKDGKFEIDYDYC 63
Query: 84 KGCGICANECPTNAIEMVREVK 105
KGC IC ECP AI+ RE K
Sbjct: 64 KGCLICEKECPVKAIKAEREEK 85
>pir||G69099 probable pyruvate synthase (EC 1.2.7.1) gamma chain -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622871|gb|AAB86210.1| (AE000929) pyruvate
oxidoreductase, gamma subunit [Methanobacterium
thermoautotrophicum]
Length = 261
Score = 102 bits (253), Expect = 1e-21
Identities = 48/95 (50%), Positives = 61/95 (63%), Gaps = 6/95 (6%)
Query: 9 DIERAQKELTEKMTPGAIAYIPGSSVINKTGSWRVFRPEFKKDKCVRCFLCYIYCPEPAI 68
+IE+ + + E + GA PGS+V NKTGSWR F+P KDKC+ C C ++CPE I
Sbjct: 172 EIEKLRVNMMESL--GATVKKPGSTVKNKTGSWRTFKPVLDKDKCIDCDNCILFCPEGCI 229
Query: 69 YLDEEGYPVFDYDYCKGCGICANECPTNAIEMVRE 103
+ E DYDYCKGCGICA +CP AI+M RE
Sbjct: 230 NREHE----IDYDYCKGCGICAEKCPVKAIKMERE 260
>sp|P56815|PORD_METTH PYRUVATE SYNTHASE SUBUNIT PORD (PYRUVATE OXIDOREDUCTASE DELTA
CHAIN) (POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE DELTA
SUBUNIT)
Length = 81
Score = 100 bits (247), Expect = 5e-21
Identities = 45/80 (56%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
Query: 24 GAIAYIPGSSVINKTGSWRVFRPEFKKDKCVRCFLCYIYCPEPAIYLDEEGYPVFDYDYC 83
GA PGS+V NKTGSWR F+P KDKC+ C C ++CPE I + E DYDYC
Sbjct: 5 GATVKKPGSTVKNKTGSWRTFKPVLDKDKCIDCDNCILFCPEGCINREHE----IDYDYC 60
Query: 84 KGCGICANECPTNAIEMVRE 103
KGCGICA +CP AI+M RE
Sbjct: 61 KGCGICAEKCPVKAIKMERE 80
>gb|AAK41455.1| Pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
delta chain) (porD-1) [Sulfolobus solfataricus]
Length = 88
Score = 96.3 bits (236), Expect = 1e-19
Identities = 42/69 (60%), Positives = 47/69 (67%)
Query: 37 KTGSWRVFRPEFKKDKCVRCFLCYIYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPTN 96
KTG WRV +P DKC +C LC +YC E I L E YP DYDYCKGCG+CA CP
Sbjct: 20 KTGLWRVEKPVISYDKCTKCRLCVLYCLENTIDLLENLYPQIDYDYCKGCGVCAQVCPPK 79
Query: 97 AIEMVREVK 105
AI+MVREVK
Sbjct: 80 AIDMVREVK 88
>sp|Q56316|PORD_THEMA PYRUVATE SYNTHASE SUBUNIT PORD (PYRUVATE OXIDOREDUCTASE DELTA
CHAIN) (POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE DELTA
SUBUNIT) >gi|7462932|pir||B72427 pyruvate synthase (EC
1.2.7.1) delta chain - Thermotoga maritima (strain MSB8)
>gi|1197392|emb|CAA59456.1| (X85171) delta subunit of
pyruvate ferredoxin oxidoreductase [Thermotoga maritima]
Length = 99
Score = 94.4 bits (231), Expect = 4e-19
Identities = 40/82 (48%), Positives = 53/82 (63%)
Query: 24 GAIAYIPGSSVINKTGSWRVFRPEFKKDKCVRCFLCYIYCPEPAIYLDEEGYPVFDYDYC 83
G + PG++ KTG+WRV RP K+KC+ C C++YCP+ AI + F+YDYC
Sbjct: 12 GGVIDKPGTAREYKTGAWRVMRPILHKEKCIDCMFCWLYCPDQAIIQEGGIMKGFNYDYC 71
Query: 84 KGCGICANECPTNAIEMVREVK 105
KGCG+CAN CP AIEM E +
Sbjct: 72 KGCGLCANVCPKQAIEMRPETE 93
>gb|AAD35110.1|AE001690_4 (AE001690) pyruvate ferredoxin oxidoreductase, delta subunit
[Thermotoga maritima]
Length = 101
Score = 94.4 bits (231), Expect = 4e-19
Identities = 40/82 (48%), Positives = 53/82 (63%)
Query: 24 GAIAYIPGSSVINKTGSWRVFRPEFKKDKCVRCFLCYIYCPEPAIYLDEEGYPVFDYDYC 83
G + PG++ KTG+WRV RP K+KC+ C C++YCP+ AI + F+YDYC
Sbjct: 14 GGVIDKPGTAREYKTGAWRVMRPILHKEKCIDCMFCWLYCPDQAIIQEGGIMKGFNYDYC 73
Query: 84 KGCGICANECPTNAIEMVREVK 105
KGCG+CAN CP AIEM E +
Sbjct: 74 KGCGLCANVCPKQAIEMRPETE 95
>emb|CAC11766.1| (AL445064) pyruvate ferredoxin oxidoreductase, delta subunit
related protein [Thermoplasma acidophilum]
Length = 96
Score = 89.7 bits (219), Expect = 1e-17
Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 15/91 (16%)
Query: 29 IPGSSVINK---TGSWRVFRPEFKKDKCVRCFLCYIYCPEPAIYLDEEG----------- 74
+P S+V + T SWR+ RP + DKC+RC +C+ YCP+ AI ++
Sbjct: 4 VPVSTVSTRNHLTDSWRIQRPTIQYDKCIRCMICWKYCPDNAINIENGNKEAPNERIAKM 63
Query: 75 -YPVFDYDYCKGCGICANECPTNAIEMVREV 104
YPV DY++CKGCGICANECP I+M EV
Sbjct: 64 EYPVIDYNFCKGCGICANECPEKCIDMEFEV 94
>gb|AAK42868.1| Pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
delta chain) (porD-2) [Sulfolobus solfataricus]
Length = 94
Score = 81.5 bits (198), Expect = 3e-15
Identities = 33/74 (44%), Positives = 44/74 (58%), Gaps = 1/74 (1%)
Query: 30 PGSSVINKTGSWRVFRPEFKKDKCVRCFLCYIYCPEPAIYLDEEGYPVFDYDYCKGCGIC 89
P +TG+WR+ +P KC+ C C+++CPE I + G DY+YCKGCG+C
Sbjct: 21 PNKGAGGRTGAWRIVKPVVDYSKCIGCKACFMFCPESTI-VPSNGKVRVDYEYCKGCGVC 79
Query: 90 ANECPTNAIEMVRE 103
AN CP AI MV E
Sbjct: 80 ANVCPVKAISMVSE 93
>gi|11499290 pyruvate ferredoxin oxidoreductase, subunit delta (porD)
[Archaeoglobus fulgidus] >gi|7430792|pir||C69462
pyruvate ferredoxin oxidoreductase, subunit delta (porD)
homolog - Archaeoglobus fulgidus
>gi|2648854|gb|AAB89549.1| (AE000986) pyruvate
ferredoxin oxidoreductase, subunit delta (porD)
[Archaeoglobus fulgidus]
Length = 97
Score = 74.5 bits (180), Expect = 4e-13
Identities = 39/84 (46%), Positives = 48/84 (56%), Gaps = 4/84 (4%)
Query: 20 KMTPGAIAYIPGSSVINKTGSWRVFRPEFKKDKCVRCFLCYIYCPEPAIYLDEEG---YP 76
K+ GAI+ P S KTG W P K+KC C C YCP+ I + E G Y
Sbjct: 4 KINLGAISE-PMQSENLKTGDWGTHYPVVDKEKCTACKTCEQYCPDLCIEVKEFGDEKYA 62
Query: 77 VFDYDYCKGCGICANECPTNAIEM 100
V +Y+YCKGCGICA+ CP AI+M
Sbjct: 63 VVNYNYCKGCGICASVCPFEAIKM 86
>pir||E64658 pyruvate ferredoxin oxidoreductase, delta subunit - Helicobacter
pylori >gi|2314260|gb|AAD08153.1| (AE000617) pyruvate
ferredoxin oxidoreductase, delta subunit [Helicobacter
pylori 26695] >gi|2935171|gb|AAC38205.1| (AF021092) PorD
subunit of pyruvate:flavodoxin oxidoreductase
[Helicobacter pylori] >gi|4155625|gb|AAD06615.1|
(AE001531) Pyruvate ferrodoxin oxidoreductase
[Helicobacter pylori J99]
Length = 130
Score = 71.4 bits (172), Expect = 3e-12
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 28 YIPGSSVINKTGSWRVFRPEFKKDKCVRCFLCYIYCPEPAIYLDEEGYPVFDYDYCKGCG 87
Y S WRV +P + C+ CF C++YCP+ AI E DY +CKGCG
Sbjct: 33 YTEQSYFTTSVAHWRVAKPVHNNNICINCFNCWVYCPDAAILSREGKLKGVDYSHCKGCG 92
Query: 88 ICANECPTN 96
+C + CPTN
Sbjct: 93 VCVDVCPTN 101
>gi|11499636 2-ketoisovalerate ferredoxin oxidoreductase, subunit delta (vorD)
[Archaeoglobus fulgidus] >gi|7430791|pir||E69506
probable 2-oxoisovalerate--ferredoxin oxidoreductase (EC
1.2.7.-) delta chain AF2054 [similarity] - Archaeoglobus
fulgidus >gi|2648489|gb|AAB89211.1| (AE000961)
2-ketoisovalerate ferredoxin oxidoreductase, subunit
delta (vorD) [Archaeoglobus fulgidus]
Length = 82
Score = 70.6 bits (170), Expect = 5e-12
Identities = 31/67 (46%), Positives = 39/67 (57%), Gaps = 2/67 (2%)
Query: 37 KTGSWRVFRPEFKKDKCVRCFLCYIYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPTN 96
+TGSWR+ RP + KC C C+ YCPE I +D + DY +CKGCG+C C
Sbjct: 17 ETGSWRILRPVVDEKKCSGCKECFYYCPEGVIQVDV--FARIDYRFCKGCGVCGEVCRQK 74
Query: 97 AIEMVRE 103
AI MV E
Sbjct: 75 AIVMVPE 81
>gb|AAK42307.1| Pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
delta chain) (porD-like) [Sulfolobus solfataricus]
Length = 363
Score = 67.1 bits (161), Expect = 6e-11
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 37 KTGSWRVFRPEFKKDKCVRCFLCYIYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPT- 95
K G+ + RP D C++C LC++YCP+ +GY YDYC GCGICA CP
Sbjct: 254 KRGTTKFERPTVDFDTCIKCKLCWVYCPDECFDETPDGYYDIAYDYCVGCGICAEVCPVK 313
Query: 96 NAIEMVRE 103
+ I MV E
Sbjct: 314 DCIVMVDE 321
>pir||S74040 pyruvate synthase delta chain - Sulfolobus solfataricus
>gi|1707734|emb|CAA69454.1| (Y08256) orf c01004
[Sulfolobus solfataricus]
Length = 363
Score = 67.1 bits (161), Expect = 6e-11
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 37 KTGSWRVFRPEFKKDKCVRCFLCYIYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPT- 95
K G+ + RP D C++C LC++YCP+ +GY YDYC GCGICA CP
Sbjct: 254 KRGTTKFERPTVDFDTCIKCKLCWVYCPDECFDETPDGYYDIAYDYCVGCGICAEVCPVK 313
Query: 96 NAIEMVRE 103
+ I MV E
Sbjct: 314 DCIVMVDE 321
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.140 0.458
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44395676
Number of Sequences: 2977
Number of extensions: 1859883
Number of successful extensions: 5710
Number of sequences better than 1.0e-10: 21
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5658
Number of HSP's gapped (non-prelim): 23
length of query: 105
length of database: 189,106,746
effective HSP length: 45
effective length of query: 60
effective length of database: 162,174,831
effective search space: 9730489860
effective search space used: 9730489860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 160 (66.7 bits)