BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1476 (porB) DE:PYRUVATE SYNTHASE SUBUNIT PORB (EC 1.2.7.1)
(PYRUVATE OXIDOREDUCTASE BETA CHAIN) (POR)
(334 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75046 pyruvate synthase (EC 1.2.7.1) beta chain PAB1476 - ... 700 0.0
pir||F71114 probable ferredoxin oxidoreductase beta subunit - Py... 679 0.0
sp|O58417|PORB_PYRHO PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OX... 675 0.0
sp|Q51805|PORB_PYRFU PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OX... 649 0.0
sp|O27771|PORB_METTH PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OX... 315 4e-85
sp|Q57714|PORB_METJA PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OX... 312 5e-84
gb|AAF91265.1|AF230199_7 (AF230199) pyruvate oxidoreductase beta... 310 1e-83
sp|Q51802|VORB_PYRFU KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORB... 281 9e-75
pir||A75047 2-ketovalerate oxidoreductase chain vorb (EC 1.-.-.-... 277 2e-73
pir||B71114 probable ferredoxin oxidoreductase beta subunit - Py... 275 5e-73
sp|O58414|VORB_PYRHO KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORB... 275 5e-73
sp|Q56317|PORB_THEMA PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OX... 262 5e-69
gi|11499292 pyruvate ferredoxin oxidoreductase, subunit beta (po... 237 2e-61
emb|CAC11768.1| (AL445064) probable 2-ketovalerate ferredoxin ox... 231 1e-59
gb|AAC38207.1| (AF021092) PorB subunit of pyruvate:flavodoxin ox... 227 2e-58
pir||G64658 probable pyruvate synthase (EC 1.2.7.1) beta chain -... 227 2e-58
gb|AAC02294.1| (AF013980) pyruvate:ferredoxin oxidoreductase bet... 227 2e-58
pir||A71858 pyruvate ferrodoxin oxidoreductase - Helicobacter py... 223 2e-57
gb|AAK41453.1| Pyruvate synthase beta chain (Pyruvic-ferredoxin ... 212 4e-54
gb|AAK42866.1| Pyruvate synthase beta chain (Pyruvic-ferredoxin ... 206 3e-52
gi|11499634 2-ketoisovalerate ferredoxin oxidoreductase, subunit... 194 2e-48
gb|AAK42309.1| Pyruvate synthase beta chain (Pyruvic-ferredoxin ... 183 3e-45
pir||S74042 probable pyruvate synthase (EC 1.2.7.1) beta chain -... 183 3e-45
emb|CAA70873.1| (Y09702) pyruvate-ferredoxin oxidoreductase [Des... 98 2e-19
pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxi... 98 2e-19
gb|AAB49653.1| (U30149) pyruvate:ferredoxin oxidoreductase [Enta... 98 2e-19
pir||S58236 pyruvate (flavodoxin) dehydrogenase (EC 1.2.99.-) - ... 96 8e-19
pir||D70403 ferredoxin oxidoreductase beta subunit - Aquifex aeo... 90 4e-17
sp|Q53046|NIFJ_RHORU PYRUVATE-FLAVODOXIN OXIDOREDUCTASE >gi|6288... 89 8e-17
pir||S70963 pyruvate (flavodoxin) dehydrogenase (EC 1.2.99.-) - ... 89 1e-16
pir||A71047 probable ferredoxin oxidoreductase beta subunit - Py... 87 4e-16
dbj|BAB12024.1| (AB021127) pyruvate:NADP+ oxidoreductase [Euglen... 86 5e-16
pir||D75168 2-ketoglutarate ferredoxin oxidoreductase, chain bet... 86 7e-16
dbj|BAA95606.1| (AB042412) pyruvate:ferredoxin oxidoreductase be... 84 2e-15
pir||G71262 probable pyruvate (flavodoxin) dehydrogenase (EC 1.2... 83 6e-15
pir||E71046 probable ferredoxin oxidoreductase beta subunit - Py... 77 2e-13
pir||T18528 probable pyruvate (flavodoxin) dehydrogenase (EC 1.2... 76 7e-13
gb|AAC18834.1| (AF064550) putative pyruvate-ferredoxin oxidoredu... 75 1e-12
emb|CAB43933.1| (Y17726) pyruvate ferredoxin oxidoreductase [Clo... 75 1e-12
gb|AAD55754.1|AF132546_1 (AF132546) pyruvate:ferredoxin oxidored... 75 2e-12
pir||G75168 2-ketoglutarate ferredoxin oxidoreductase, chain bet... 74 3e-12
gb|AAC16733.1| (AF064035) pyruvate-ferredoxin oxidoreductase 1 [... 73 6e-12
emb|CAB43934.1| (Y17727) pyruvate ferredoxin oxidoreductase [Clo... 73 6e-12
sp|Q57957|KORB_METJA 2-OXOGLUTARATE SYNTHASE SUBUNIT KORB (2-KET... 72 8e-12
sp|Q06879|NIFJ_ANASP PYRUVATE-FLAVODOXIN OXIDOREDUCTASE >gi|2126... 71 2e-11
sp|P52647|NIFJ_ECOLI PROBABLE PYRUVATE-FLAVODOXIN OXIDOREDUCTASE... 71 2e-11
>pir||F75046 pyruvate synthase (EC 1.2.7.1) beta chain PAB1476 - Pyrococcus
abyssi (strain Orsay) >gi|5458780|emb|CAB50267.1|
(AJ248287) PYRUVATE SYNTHASE SUBUNIT PORB (EC 1.2.7.1)
(PYRUVATE OXIDOREDUCTASE BETA CHAIN) (POR) [Pyrococcus
abyssi]
Length = 334
Score = 700 bits (1787), Expect = 0.0
Identities = 334/334 (100%), Positives = 334/334 (100%)
Query: 1 MVEMAVRKPPITTREYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQAT 60
MVEMAVRKPPITTREYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQAT
Sbjct: 1 MVEMAVRKPPITTREYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQAT 60
Query: 61 GCMEVVSAVFPYTAWKVPWVHVAFENAAAAASGIEAAWKKKGIKGKILAIGGDGGTADIG 120
GCMEVVSAVFPYTAWKVPWVHVAFENAAAAASGIEAAWKKKGIKGKILAIGGDGGTADIG
Sbjct: 61 GCMEVVSAVFPYTAWKVPWVHVAFENAAAAASGIEAAWKKKGIKGKILAIGGDGGTADIG 120
Query: 121 LQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWV 180
LQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWV
Sbjct: 121 LQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWV 180
Query: 181 ALIAAAHMIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIA 240
ALIAAAHMIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIA
Sbjct: 181 ALIAAAHMIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIA 240
Query: 241 RLAIETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFK 300
RLAIETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFK
Sbjct: 241 RLAIETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFK 300
Query: 301 HLFKRPEAIDELRNQIKAMWKVLGVEAILPKPEE 334
HLFKRPEAIDELRNQIKAMWKVLGVEAILPKPEE
Sbjct: 301 HLFKRPEAIDELRNQIKAMWKVLGVEAILPKPEE 334
>pir||F71114 probable ferredoxin oxidoreductase beta subunit - Pyrococcus
horikoshii >gi|3257093|dbj|BAA29776.1| (AP000003) 334aa
long hypothetical ferredoxin oxidoreductase beta subunit
[Pyrococcus horikoshii]
Length = 334
Score = 679 bits (1732), Expect = 0.0
Identities = 319/334 (95%), Positives = 328/334 (97%)
Query: 1 MVEMAVRKPPITTREYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQAT 60
M+ MAVRKPPITTREYWAPGHAACAGCGCA AL+LATKAFSEAMEEKYGDPNAFAIAQAT
Sbjct: 1 MINMAVRKPPITTREYWAPGHAACAGCGCAIALKLATKAFSEAMEEKYGDPNAFAIAQAT 60
Query: 61 GCMEVVSAVFPYTAWKVPWVHVAFENAAAAASGIEAAWKKKGIKGKILAIGGDGGTADIG 120
GCMEVVSAVFPYTAWKVPW+HVAFENAAAAASG+EAAWKK GIKGKILAIGGDGGTADIG
Sbjct: 61 GCMEVVSAVFPYTAWKVPWIHVAFENAAAAASGVEAAWKKLGIKGKILAIGGDGGTADIG 120
Query: 121 LQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWV 180
LQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWV
Sbjct: 121 LQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWV 180
Query: 181 ALIAAAHMIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIA 240
ALIAAAH IPY ATASIGNPFD VKKVKKAAKVDGPAF+QVHCTCPTGWRTPLEKG+EIA
Sbjct: 181 ALIAAAHQIPYAATASIGNPFDLVKKVKKAAKVDGPAFIQVHCTCPTGWRTPLEKGVEIA 240
Query: 241 RLAIETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFK 300
RLAIETGMWPLFEIENGDIW+IKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFK
Sbjct: 241 RLAIETGMWPLFEIENGDIWNIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFK 300
Query: 301 HLFKRPEAIDELRNQIKAMWKVLGVEAILPKPEE 334
HLFKRPEAI+ELRNQIKAMWKVLGVEAILP+PEE
Sbjct: 301 HLFKRPEAIEELRNQIKAMWKVLGVEAILPRPEE 334
>sp|O58417|PORB_PYRHO PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OXIDOREDUCTASE BETA CHAIN)
(POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
Length = 331
Score = 675 bits (1724), Expect = 0.0
Identities = 318/331 (96%), Positives = 326/331 (98%)
Query: 4 MAVRKPPITTREYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCM 63
MAVRKPPITTREYWAPGHAACAGCGCA AL+LATKAFSEAMEEKYGDPNAFAIAQATGCM
Sbjct: 1 MAVRKPPITTREYWAPGHAACAGCGCAIALKLATKAFSEAMEEKYGDPNAFAIAQATGCM 60
Query: 64 EVVSAVFPYTAWKVPWVHVAFENAAAAASGIEAAWKKKGIKGKILAIGGDGGTADIGLQA 123
EVVSAVFPYTAWKVPW+HVAFENAAAAASG+EAAWKK GIKGKILAIGGDGGTADIGLQA
Sbjct: 61 EVVSAVFPYTAWKVPWIHVAFENAAAAASGVEAAWKKLGIKGKILAIGGDGGTADIGLQA 120
Query: 124 LSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALI 183
LSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALI
Sbjct: 121 LSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALI 180
Query: 184 AAAHMIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIARLA 243
AAAH IPY ATASIGNPFD VKKVKKAAKVDGPAF+QVHCTCPTGWRTPLEKG+EIARLA
Sbjct: 181 AAAHQIPYAATASIGNPFDLVKKVKKAAKVDGPAFIQVHCTCPTGWRTPLEKGVEIARLA 240
Query: 244 IETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLF 303
IETGMWPLFEIENGDIW+IKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLF
Sbjct: 241 IETGMWPLFEIENGDIWNIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLF 300
Query: 304 KRPEAIDELRNQIKAMWKVLGVEAILPKPEE 334
KRPEAI+ELRNQIKAMWKVLGVEAILP+PEE
Sbjct: 301 KRPEAIEELRNQIKAMWKVLGVEAILPRPEE 331
>sp|Q51805|PORB_PYRFU PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OXIDOREDUCTASE BETA CHAIN)
(POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|11252319|pir||T45089 pyruvate synthase (EC 1.2.7.1)
beta chain [imported] - Pyrococcus furiosus
>gi|1197364|emb|CAA59506.1| (X85250) pyruvate ferredoxin
oxidoreductase beta-2 [Pyrococcus furiosus]
Length = 331
Score = 649 bits (1655), Expect = 0.0
Identities = 304/331 (91%), Positives = 318/331 (95%)
Query: 4 MAVRKPPITTREYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCM 63
MAVRKPPITTREYWAPGHAACAGCGCATALRLATKA SEAMEEKYGDPNAFAIA ATGCM
Sbjct: 1 MAVRKPPITTREYWAPGHAACAGCGCATALRLATKALSEAMEEKYGDPNAFAIAHATGCM 60
Query: 64 EVVSAVFPYTAWKVPWVHVAFENAAAAASGIEAAWKKKGIKGKILAIGGDGGTADIGLQA 123
EVVSAVFPYTAWK PW+HVAFENAAA ASGIEAAWKK G KGKILAIGGDGGTADIGLQA
Sbjct: 61 EVVSAVFPYTAWKAPWIHVAFENAAAVASGIEAAWKKLGRKGKILAIGGDGGTADIGLQA 120
Query: 124 LSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALI 183
LSGMLER HNV+YLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYS+GED+PKKWVALI
Sbjct: 121 LSGMLERWHNVLYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSVGEDKPKKWVALI 180
Query: 184 AAAHMIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIARLA 243
AAAH IPYVATASIGNP DFV+K+KKA K+DGPAFVQV CTCPTGWR+PLEKG+EIARLA
Sbjct: 181 AAAHQIPYVATASIGNPLDFVRKIKKAGKIDGPAFVQVLCTCPTGWRSPLEKGVEIARLA 240
Query: 244 IETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLF 303
IETG+WPLFEIENGDIW+IKIQPPGGGAKVYKEG RVVRIEFKKPIEEYLK QGRFKHLF
Sbjct: 241 IETGIWPLFEIENGDIWNIKIQPPGGGAKVYKEGNRVVRIEFKKPIEEYLKLQGRFKHLF 300
Query: 304 KRPEAIDELRNQIKAMWKVLGVEAILPKPEE 334
KRPEAI+ELRNQ+KAMWKVLGVEAILP+PEE
Sbjct: 301 KRPEAIEELRNQVKAMWKVLGVEAILPRPEE 331
>sp|O27771|PORB_METTH PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OXIDOREDUCTASE BETA CHAIN)
(POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|7431598|pir||D69099 pyruvate synthase (EC 1.2.7.1)
beta chain - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622869|gb|AAB86208.1| (AE000929)
pyruvate oxidoreductase, beta subunit [Methanobacterium
thermoautotrophicum]
Length = 288
Score = 315 bits (799), Expect = 4e-85
Identities = 159/299 (53%), Positives = 202/299 (67%), Gaps = 29/299 (9%)
Query: 11 ITTREYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVF 70
I E+ APGH CAGCG +RLA K + N A++ +TGC+EV++ +
Sbjct: 3 IPEEEFLAPGHRGCAGCGATVGVRLALKVLGK---------NTVAVS-STGCLEVITTPY 52
Query: 71 PYTAWKVPWVHVAFENAAAAASGIEAAWKKKGIKG-KILAIGGDGGTADIGLQALSGMLE 129
P TAW++PW+HVAFENAAA ASG+E A K KG ++A GDGGTADIGLQALSG +E
Sbjct: 53 PETAWRIPWIHVAFENAAAVASGVERALKAKGRDDVNVVAFAGDGGTADIGLQALSGAME 112
Query: 130 RGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHMI 189
RGHN++Y+ YDNEAYMNTGIQRS+STPYGA TTTSP GK S GEDRPKK + LI AAH +
Sbjct: 113 RGHNIIYICYDNEAYMNTGIQRSASTPYGASTTTSPHGKESFGEDRPKKNMPLIMAAHGV 172
Query: 190 PYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIARLAIETGMW 249
PYVATASI P DF++KV+KA + DGPA++ +H C TGW K +E+ RLA+ETG W
Sbjct: 173 PYVATASISYPEDFMEKVRKAKETDGPAYIHLHQPCTTGWGFDPAKTVELGRLAVETGSW 232
Query: 250 PLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLFKRPEA 308
L+EIE+GD + + +P +KP+EEYL Q RF+HL + +A
Sbjct: 233 ILYEIEDGD-FRVTYRPVQ-----------------RKPVEEYLNAQKRFRHLTEEQKA 273
>sp|Q57714|PORB_METJA PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OXIDOREDUCTASE BETA CHAIN)
(POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|2127891|pir||C64333 probable pyruvate synthase (EC
1.2.7.1) beta chain - Methanococcus jannaschii
>gi|1590994|gb|AAB98253.1| (U67482) pyruvate ferredoxin
oxidoreductase, subunit beta (porB) [Methanococcus
jannaschii]
Length = 298
Score = 312 bits (790), Expect = 5e-84
Identities = 170/319 (53%), Positives = 211/319 (65%), Gaps = 38/319 (11%)
Query: 15 EYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTA 74
EY+APGH CAGCG A RL K + I ATGC+EV++ +P T+
Sbjct: 10 EYFAPGHRGCAGCGAAIVARLLLKVAGKDT----------IITNATGCLEVMTTPYPETS 59
Query: 75 WKVPWVHVAFENAAAAASGIEAAWKK-KGIKGK-------ILAIGGDGGTADIGLQALSG 126
W+VPW+H AFENAAA ASGIEAA K K +GK ++AIGGDGGTADIG QALSG
Sbjct: 60 WRVPWIHTAFENAAATASGIEAAVKALKRKRGKFADKKINVIAIGGDGGTADIGFQALSG 119
Query: 127 MLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAA 186
+ERGH+++Y+MYDNEAYMNTGIQRSSSTP+ A TTTSP G GEDRPKK + +I AA
Sbjct: 120 AMERGHDILYIMYDNEAYMNTGIQRSSSTPFMAATTTSPAGSKIRGEDRPKKDMTMIMAA 179
Query: 187 HMIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIARLAIET 246
H IPYVATA I P DF++KVKKA ++GP F+QV C TGW P EK IEI RLA+ET
Sbjct: 180 HGIPYVATACISYPEDFMRKVKKALSIEGPKFIQVLQPCTTGWGYPPEKTIEIGRLAVET 239
Query: 247 GMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLFKRP 306
G++PL+EIENG+ + I +P AK +KP+ EYLK Q R++HL
Sbjct: 240 GIFPLYEIENGE-FRITYKP----AK-------------RKPVREYLKMQKRYRHL--TD 279
Query: 307 EAIDELRNQIKAMWKVLGV 325
E I+ ++ I K+LG+
Sbjct: 280 EDIERIQKYIDEKCKLLGL 298
>gb|AAF91265.1|AF230199_7 (AF230199) pyruvate oxidoreductase beta subunit [Methanococcus
maripaludis]
Length = 298
Score = 310 bits (787), Expect = 1e-83
Identities = 165/310 (53%), Positives = 206/310 (66%), Gaps = 38/310 (12%)
Query: 15 EYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTA 74
E +APGH CAGCG A RLA KA + +A ATGC+EV++ +P TA
Sbjct: 10 ELFAPGHRGCAGCGAAIVARLALKAAGKNT----------IVANATGCLEVMTTPYPETA 59
Query: 75 WKVPWVHVAFENAAAAASGIEAAW----KKKGIKGK----ILAIGGDGGTADIGLQALSG 126
W+VPW+HVAFENAAA ASG+E A +K+G G+ ++A GGDGGTADIG QALSG
Sbjct: 60 WRVPWIHVAFENAAAVASGVEGAVAALKRKRGKYGEEKVNVIAFGGDGGTADIGFQALSG 119
Query: 127 MLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAA 186
+ERGH++VY+MYDNEAYMNTG+QRS STP A TTTSP G GE PKK + +I AA
Sbjct: 120 AMERGHDMVYIMYDNEAYMNTGVQRSGSTPLMASTTTSPAGSLIRGETMPKKNMPMIMAA 179
Query: 187 HMIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIARLAIET 246
H IPYVATASI P DF+ KVKKA +++GPAF+QV C TGW P +K IE+ RLA+ET
Sbjct: 180 HGIPYVATASISYPEDFMNKVKKACEINGPAFIQVMQPCTTGWGYPADKTIELGRLAVET 239
Query: 247 GMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLFKRP 306
G+WPLFEIENG+ +K + ++ +KPIEEYLK Q R++HL P
Sbjct: 240 GVWPLFEIENGE---------------FKLNYKPLK---RKPIEEYLKVQKRYRHL--NP 279
Query: 307 EAIDELRNQI 316
E I ++ I
Sbjct: 280 EEISVIQKTI 289
>sp|Q51802|VORB_PYRFU KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORB (VOR) (2-OXOISOVALERATE
OXIDOREDUCTASE BETA CHAIN) (2-OXOISOVALERATE-FERREDOXIN
OXIDOREDUCTASE BETA SUBUNIT) >gi|11252317|pir||T45086
pyruvate synthase (EC 1.2.7.1) beta chain [imported] -
Pyrococcus furiosus >gi|1197361|emb|CAA59503.1| (X85250)
2-ketovalerate ferredoxin oxidoreductase beta-2
[Pyrococcus furiosus]
Length = 311
Score = 281 bits (711), Expect = 9e-75
Identities = 158/323 (48%), Positives = 193/323 (58%), Gaps = 34/323 (10%)
Query: 7 RKPPITTREYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVV 66
++ I E++ GH AC GCG + LR KA YG I C ++
Sbjct: 9 KRVTIPFEEHFYAGHTACQGCGASLGLRYVLKA--------YGKKTILVIPAC--CSTII 58
Query: 67 SAVFPYTAWKVPWVHVAFENAAAAASGIEAAWKKKGIKGK----ILAIG--GDGGTADIG 120
+ +PY+A H AFE A SGIEAA K G K K I+ +G GDGGTADIG
Sbjct: 59 AGPWPYSAIDANLFHTAFETTGAVISGIEAALKAMGYKVKGEDGIMVVGWAGDGGTADIG 118
Query: 121 LQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWV 180
LQALSG LERGH+ VY+MYDNEAYMNTGIQRSSSTPYGAWTT +P G+ E R KK V
Sbjct: 119 LQALSGFLERGHDAVYIMYDNEAYMNTGIQRSSSTPYGAWTTNTPGGRRHFLEKRHKKKV 178
Query: 181 ALIAAAHMIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIA 240
I AH IPY ATASI P DF++K+KKA K+ GP+F+Q+ CPTGWR P +K IEIA
Sbjct: 179 IDIVIAHRIPYAATASIAYPEDFIRKLKKAQKISGPSFIQLFAPCPTGWRAPTDKSIEIA 238
Query: 241 RLAIETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFK 300
RLA++T +PLFE ENG KI P + KPIEE+LK QGRFK
Sbjct: 239 RLAVQTAYFPLFEYENG---KYKINMPNPKKE-------------PKPIEEFLKLQGRFK 282
Query: 301 HLFKRPEAIDELRNQIKAMWKVL 323
++ K E I+ L+ + W+ L
Sbjct: 283 YMTK--EDIETLQKWVLEEWERL 303
>pir||A75047 2-ketovalerate oxidoreductase chain vorb (EC 1.-.-.-) (vor) PAB1473
- Pyrococcus abyssi (strain Orsay)
>gi|5458783|emb|CAB50270.1| (AJ248287) 2-KETOVALERATE
OXIDOREDUCTASE SUBUNIT VORB (EC 1.-.-.-) (VOR)
[Pyrococcus abyssi]
Length = 311
Score = 277 bits (700), Expect = 2e-73
Identities = 157/323 (48%), Positives = 192/323 (58%), Gaps = 34/323 (10%)
Query: 7 RKPPITTREYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVV 66
R+ + E + GH AC GCG + LR KA YG I C ++
Sbjct: 9 RRLTLPFEENFFAGHTACQGCGASLGLRYVLKA--------YGRKTILVIPAC--CSTII 58
Query: 67 SAVFPYTAWKVPWVHVAFENAAAAASGIEAAWKKKGIKGK----ILAIG--GDGGTADIG 120
+ +PY+A H AFE A SGIEAA K G K K I+ +G GDGGTADIG
Sbjct: 59 AGPWPYSALNANLFHTAFETTGAVISGIEAALKALGYKVKGEDGIMVVGWAGDGGTADIG 118
Query: 121 LQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWV 180
LQALSG LERGH+ +Y+MYDNEAYMNTGIQRSSSTPYGAWTT +P GK E R KK V
Sbjct: 119 LQALSGFLERGHDALYIMYDNEAYMNTGIQRSSSTPYGAWTTNTPGGKRHFLEKRHKKKV 178
Query: 181 ALIAAAHMIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIA 240
I AH IPY ATAS+ P DF++K+KKA K+ GP+F+Q+ CPTGWR P +K IEIA
Sbjct: 179 IDIVIAHRIPYAATASVAYPEDFLRKLKKAQKIPGPSFIQLFAPCPTGWRAPTDKTIEIA 238
Query: 241 RLAIETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFK 300
RLA++T +PLFE ENG KI P + KPIEE+LK QGRFK
Sbjct: 239 RLAVQTAYFPLFEYENG---KYKINMPNPKKE-------------PKPIEEFLKLQGRFK 282
Query: 301 HLFKRPEAIDELRNQIKAMWKVL 323
++ K E I+ L+ + W+ L
Sbjct: 283 YMTK--EDIEVLQKWVLEEWERL 303
>pir||B71114 probable ferredoxin oxidoreductase beta subunit - Pyrococcus
horikoshii >gi|3257089|dbj|BAA29772.1| (AP000003) 314aa
long hypothetical ferredoxin oxidoreductase beta subunit
[Pyrococcus horikoshii]
Length = 314
Score = 275 bits (696), Expect = 5e-73
Identities = 155/327 (47%), Positives = 192/327 (58%), Gaps = 34/327 (10%)
Query: 3 EMAVRKPPITTREYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGC 62
E ++ I E + GH AC GCG + LR KA YG I C
Sbjct: 8 EEVKKRLTIPFEENFFAGHTACQGCGASLGLRYVLKA--------YGRKTIVVIPAC--C 57
Query: 63 MEVVSAVFPYTAWKVPWVHVAFENAAAAASGIEAAWKKKGIKGK----ILAIG--GDGGT 116
+++ +PY+A H AF A SGIEA K G K K I+ +G GDGGT
Sbjct: 58 STIIAGPWPYSALNANLFHTAFATTGAVISGIEAGLKALGYKVKGEDGIMVVGWAGDGGT 117
Query: 117 ADIGLQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRP 176
ADIGLQALSG +ERGH+ VY+MYDNEAYMNTGIQRSSSTPYGAWTT +P GK + E R
Sbjct: 118 ADIGLQALSGFIERGHDAVYIMYDNEAYMNTGIQRSSSTPYGAWTTNTPGGKRHLLEKRH 177
Query: 177 KKWVALIAAAHMIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKG 236
KK V I AH IPY ATAS+ P DF++K+KKA K+ GP+F+Q+ CPTGWR P +K
Sbjct: 178 KKKVIDIVIAHRIPYAATASVAYPEDFIRKLKKAQKIPGPSFIQLFAPCPTGWRAPTDKS 237
Query: 237 IEIARLAIETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQ 296
IEIARLA++T +PLFE ENG KI P + KPIEE+LK Q
Sbjct: 238 IEIARLAVQTAYFPLFEYENG---KYKINMPNPKKE-------------PKPIEEFLKLQ 281
Query: 297 GRFKHLFKRPEAIDELRNQIKAMWKVL 323
GRFK++ K E ++ L+ + W+ L
Sbjct: 282 GRFKYMTK--EDVEALQKWVLEEWERL 306
>sp|O58414|VORB_PYRHO KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORB (VOR) (2-OXOISOVALERATE
OXIDOREDUCTASE BETA CHAIN) (2-OXOISOVALERATE-FERREDOXIN
OXIDOREDUCTASE BETA SUBUNIT)
Length = 311
Score = 275 bits (696), Expect = 5e-73
Identities = 155/327 (47%), Positives = 192/327 (58%), Gaps = 34/327 (10%)
Query: 3 EMAVRKPPITTREYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGC 62
E ++ I E + GH AC GCG + LR KA YG I C
Sbjct: 5 EEVKKRLTIPFEENFFAGHTACQGCGASLGLRYVLKA--------YGRKTIVVIPAC--C 54
Query: 63 MEVVSAVFPYTAWKVPWVHVAFENAAAAASGIEAAWKKKGIKGK----ILAIG--GDGGT 116
+++ +PY+A H AF A SGIEA K G K K I+ +G GDGGT
Sbjct: 55 STIIAGPWPYSALNANLFHTAFATTGAVISGIEAGLKALGYKVKGEDGIMVVGWAGDGGT 114
Query: 117 ADIGLQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRP 176
ADIGLQALSG +ERGH+ VY+MYDNEAYMNTGIQRSSSTPYGAWTT +P GK + E R
Sbjct: 115 ADIGLQALSGFIERGHDAVYIMYDNEAYMNTGIQRSSSTPYGAWTTNTPGGKRHLLEKRH 174
Query: 177 KKWVALIAAAHMIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKG 236
KK V I AH IPY ATAS+ P DF++K+KKA K+ GP+F+Q+ CPTGWR P +K
Sbjct: 175 KKKVIDIVIAHRIPYAATASVAYPEDFIRKLKKAQKIPGPSFIQLFAPCPTGWRAPTDKS 234
Query: 237 IEIARLAIETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQ 296
IEIARLA++T +PLFE ENG KI P + KPIEE+LK Q
Sbjct: 235 IEIARLAVQTAYFPLFEYENG---KYKINMPNPKKE-------------PKPIEEFLKLQ 278
Query: 297 GRFKHLFKRPEAIDELRNQIKAMWKVL 323
GRFK++ K E ++ L+ + W+ L
Sbjct: 279 GRFKYMTK--EDVEALQKWVLEEWERL 303
>sp|Q56317|PORB_THEMA PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OXIDOREDUCTASE BETA CHAIN)
(POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|7431600|pir||D72427 pyruvate synthase (EC 1.2.7.1)
beta chain - Thermotoga maritima (strain MSB8)
>gi|1197393|emb|CAA59458.1| (X85171) beta subunit of
pyruvate ferredoxin oxidoreductase [Thermotoga maritima]
>gi|4980502|gb|AAD35112.1|AE001690_6 (AE001690) pyruvate
ferredoxin oxidoreductase, beta subunit [Thermotoga
maritima]
Length = 324
Score = 262 bits (662), Expect = 5e-69
Identities = 142/315 (45%), Positives = 188/315 (59%), Gaps = 36/315 (11%)
Query: 20 GHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTAWKVPW 79
GH C GCG ++ E + ATGC+EV ++++PYTAW VP+
Sbjct: 22 GHRLCPGCGAPITVKFVMMIARHLGYEP-------VVGLATGCLEVSTSIYPYTAWSVPY 74
Query: 80 VHVAFENAAAAASGIEAAWKKKGIKGKI--------LAIGGDGGTADIGLQALSGMLERG 131
+H AFEN AA SG+E A+K KGKI +A GGDGGT DIGLQ+LSGMLERG
Sbjct: 75 IHNAFENVAATMSGVETAYKALKNKGKIPEDKKYAFIAFGGDGGTYDIGLQSLSGMLERG 134
Query: 132 HNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHMIPY 191
H V+Y++YDNE YMNTG QRS STP G+ TTT+P GK G+ + KK + I AAH Y
Sbjct: 135 HKVLYVLYDNEGYMNTGNQRSGSTPPGSDTTTAPVGKKLPGKVQLKKNIVEIVAAHENVY 194
Query: 192 VATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIARLAIETGMWPL 251
ATAS+ P DF KV+KA DGP+F+ V C WR +K +EI++LA+ET WPL
Sbjct: 195 AATASLSEPMDFFAKVEKALNFDGPSFLAVFSPCVRFWRVNDDKTVEISKLAVETKYWPL 254
Query: 252 FEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLFKRPEA--- 308
+E+E G ++ + +P +F KP+EE+LK QGRF+ L RP+A
Sbjct: 255 YEVERG-VYRVTRKPR----------------QF-KPVEEFLKAQGRFRKLLSRPDAKEI 296
Query: 309 IDELRNQIKAMWKVL 323
+DEL+ + W+ L
Sbjct: 297 VDELQEYVDRRWERL 311
>gi|11499292 pyruvate ferredoxin oxidoreductase, subunit beta (porB)
[Archaeoglobus fulgidus] >gi|7431599|pir||E69462
probable pyruvate synthase (EC 1.2.7.1) beta chain -
Archaeoglobus fulgidus >gi|2648852|gb|AAB89547.1|
(AE000986) pyruvate ferredoxin oxidoreductase, subunit
beta (porB) [Archaeoglobus fulgidus]
Length = 294
Score = 237 bits (598), Expect = 2e-61
Identities = 127/304 (41%), Positives = 180/304 (58%), Gaps = 33/304 (10%)
Query: 15 EYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTA 74
+Y+ GH AC GCG A++ D FA+ +TGC+E++S+ + A
Sbjct: 2 KYFGSGHGACPGCGLPIAVKTVLNLL---------DGKVFAV-NSTGCLEIISSQYGKNA 51
Query: 75 WKVPWVHVAFENAAAAASGIEAAWK--KKGIKGKILAIGGDGGTADIGLQALSGMLERGH 132
W VP++H FENAAA A+G+EAA + K+ +G ++ GDG TADIG+ LSG +R H
Sbjct: 52 WNVPYIHSLFENAAAVAAGVEAALRALKRKDEGHVVVFAGDGATADIGIGTLSGAFDRNH 111
Query: 133 NVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHMIPYV 192
+++Y+ DNEAY NTG Q+S TP G TTT+P GK G+ KK + IA AH IPYV
Sbjct: 112 DILYICLDNEAYQNTGHQQSGLTPPGESTTTTPAGKVLPGKVGRKKDMISIAVAHGIPYV 171
Query: 193 ATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIARLAIETGMWPLF 252
A++S+G D +KVKKA K +G ++Q+H C TGW I++ARLA+ETG++PL
Sbjct: 172 ASSSVGYVSDIRRKVKKAVKFEGAKYIQIHSPCVTGWGIDGSIAIKVARLAVETGLYPLV 231
Query: 253 EIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLF---KRPEAI 309
E E G + ++ +I+ +KP+EEYLK Q RF+HLF K E I
Sbjct: 232 EFEYGKLTSVR------------------KIKDRKPVEEYLKLQRRFRHLFTHEKGREMI 273
Query: 310 DELR 313
+ L+
Sbjct: 274 ETLQ 277
>emb|CAC11768.1| (AL445064) probable 2-ketovalerate ferredoxin oxidoreductase beta-2
chain [Thermoplasma acidophilum]
Length = 300
Score = 231 bits (582), Expect = 1e-59
Identities = 129/314 (41%), Positives = 166/314 (52%), Gaps = 32/314 (10%)
Query: 11 ITTREYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVF 70
I E APGH AC GCG A+R KA E ++ C V+
Sbjct: 5 IPKEELMAPGHTACHGCGATLAMRYVLKALGEKT----------VVSVPASCWAVIPGAM 54
Query: 71 PYTAWKVPWVHVAFENAAAAASGIEAAWKKKGIKG-KILAIGGDGGTADIGLQALSGMLE 129
P+ VP V+ F A+ SG+ +G ++ GDGGTADIGLQ LSG +E
Sbjct: 55 PFRTLDVPMVYTPFAATGASISGLREGLDIQGKSDYNVVGFAGDGGTADIGLQGLSGAME 114
Query: 130 RGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHMI 189
RGHNV Y+MYDNE YMNTG+QRS STPYGA TTT+P GK + KK VA + A +
Sbjct: 115 RGHNVFYIMYDNEGYMNTGVQRSGSTPYGARTTTTPVGKERDFKKENKKIVADMMIAQNV 174
Query: 190 PYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIARLAIETGMW 249
PYVATA++ P D +KK++ A V GP F+Q+ CPTGW P EK IEI+RLA+++ M+
Sbjct: 175 PYVATATVAYPEDLIKKIEHAKAVHGPKFIQILAPCPTGWYYPPEKTIEISRLAVQSRMF 234
Query: 250 PLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLFKRPEAI 309
PL+E G + K P + EY+K Q RFKHL I
Sbjct: 235 PLYEFIEGRFYLNKSFKP-------------------IDVSEYVKAQDRFKHL--NEGEI 273
Query: 310 DELRNQIKAMWKVL 323
+ LR ++ W L
Sbjct: 274 ENLRRYVEERWNQL 287
>gb|AAC38207.1| (AF021092) PorB subunit of pyruvate:flavodoxin oxidoreductase
[Helicobacter pylori]
Length = 328
Score = 227 bits (572), Expect = 2e-58
Identities = 125/318 (39%), Positives = 172/318 (53%), Gaps = 36/318 (11%)
Query: 15 EYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTA 74
E + H C GCG +R A + +TGC+EV SAV+P+T+
Sbjct: 16 EKFQGSHLLCPGCGHGIIVREVLNAVD----------GPIVLGNSTGCLEVCSAVYPHTS 65
Query: 75 WKVPWVHVAFENAAAAASGIEAAWKK-------KGIKGKILAIGGDGGTADIGLQALSGM 127
W VPW+H+ FEN + A SG+EA +K +G K K +A GGDG + DIGLQ +SG
Sbjct: 66 WDVPWIHIGFENGSTAISGVEAMYKALTNKGRYQGQKPKFVAFGGDGASYDIGLQFISGC 125
Query: 128 LERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAH 187
+ERGH++ Y+ DNE Y NTG QRS STP GA T+T+P G S G+ KK + I A+H
Sbjct: 126 MERGHDMTYICLDNENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASH 185
Query: 188 MIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIARLAIETG 247
+PYVA S D KK+K A +GP F+ C T W+ K IE+A +A+++
Sbjct: 186 GVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFESNKTIELADMAVDSL 245
Query: 248 MWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLFKR-- 305
M+PLFEI NG I +P ++ P+ +YL Q RFKHLFK+
Sbjct: 246 MFPLFEIFNGRELKITYRP-----------RNII------PVRDYLGAQKRFKHLFKKEN 288
Query: 306 PEAIDELRNQIKAMWKVL 323
I+EL+ + W+ L
Sbjct: 289 EHIIEELQKDVNERWEYL 306
>pir||G64658 probable pyruvate synthase (EC 1.2.7.1) beta chain - Helicobacter
pylori (strain 26695) >gi|2314262|gb|AAD08155.1|
(AE000617) pyruvate ferredoxin oxidoreductase, beta
subunit [Helicobacter pylori 26695]
Length = 314
Score = 227 bits (572), Expect = 2e-58
Identities = 125/318 (39%), Positives = 172/318 (53%), Gaps = 36/318 (11%)
Query: 15 EYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTA 74
E + H C GCG +R A + +TGC+EV SAV+P+T+
Sbjct: 16 EKFQGSHLLCPGCGHGIIVREVLNAVD----------GPIVLGNSTGCLEVCSAVYPHTS 65
Query: 75 WKVPWVHVAFENAAAAASGIEAAWKK-------KGIKGKILAIGGDGGTADIGLQALSGM 127
W VPW+H+ FEN + A SG+EA +K +G K K +A GGDG + DIGLQ +SG
Sbjct: 66 WDVPWIHIGFENGSTAISGVEAMYKALTNKGRYQGQKPKFVAFGGDGASYDIGLQFISGC 125
Query: 128 LERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAH 187
+ERGH++ Y+ DNE Y NTG QRS STP GA T+T+P G S G+ KK + I A+H
Sbjct: 126 MERGHDMTYICLDNENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASH 185
Query: 188 MIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIARLAIETG 247
+PYVA S D KK+K A +GP F+ C T W+ K IE+A +A+++
Sbjct: 186 GVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFESNKTIELADMAVDSL 245
Query: 248 MWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLFKR-- 305
M+PLFEI NG I +P ++ P+ +YL Q RFKHLFK+
Sbjct: 246 MFPLFEIFNGRELKITYRP-----------RNII------PVRDYLGAQKRFKHLFKKEN 288
Query: 306 PEAIDELRNQIKAMWKVL 323
I+EL+ + W+ L
Sbjct: 289 EHIIEELQKDVNERWEYL 306
>gb|AAC02294.1| (AF013980) pyruvate:ferredoxin oxidoreductase beta subunit
[Helicobacter pylori]
Length = 314
Score = 227 bits (572), Expect = 2e-58
Identities = 125/318 (39%), Positives = 172/318 (53%), Gaps = 36/318 (11%)
Query: 15 EYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTA 74
E + H C GCG +R A + +TGC+EV SAV+P+T+
Sbjct: 16 EKFQGSHLLCPGCGHGIIVREVLNAVD----------GPIVLGNSTGCLEVCSAVYPHTS 65
Query: 75 WKVPWVHVAFENAAAAASGIEAAWKK-------KGIKGKILAIGGDGGTADIGLQALSGM 127
W VPW+H+ FEN + A SG+EA +K +G K K +A GGDG + DIGLQ +SG
Sbjct: 66 WDVPWIHIGFENGSTAISGVEAMYKALVNKGRYQGQKPKFVAFGGDGASYDIGLQFISGC 125
Query: 128 LERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAH 187
+ERGH++ Y+ DNE Y NTG QRS STP GA T+T+P G S G+ KK + I A+H
Sbjct: 126 MERGHDMTYICLDNENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASH 185
Query: 188 MIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIARLAIETG 247
+PYVA S D KK+K A +GP F+ C T W+ K IE+A +A+++
Sbjct: 186 GVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFESNKTIELADMAVDSL 245
Query: 248 MWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLFKR-- 305
M+PLFEI NG I +P ++ P+ +YL Q RFKHLFK+
Sbjct: 246 MFPLFEIFNGRELKITYRP-----------RNII------PVRDYLGAQKRFKHLFKKEN 288
Query: 306 PEAIDELRNQIKAMWKVL 323
I+EL+ + W+ L
Sbjct: 289 EHIIEELQKDVNERWEYL 306
>pir||A71858 pyruvate ferrodoxin oxidoreductase - Helicobacter pylori (strain
J99) >gi|4155627|gb|AAD06617.1| (AE001531) Pyruvate
ferrodoxin oxidoreductase [Helicobacter pylori J99]
Length = 314
Score = 223 bits (563), Expect = 2e-57
Identities = 122/318 (38%), Positives = 171/318 (53%), Gaps = 36/318 (11%)
Query: 15 EYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTA 74
E + H C GCG +R A + +TGC+EV SAV+P+T+
Sbjct: 16 EKFQGSHLLCPGCGHGIIVREVLNAVD----------GPIVLGNSTGCLEVCSAVYPHTS 65
Query: 75 WKVPWVHVAFENAAAAASGIEAAWKK-------KGIKGKILAIGGDGGTADIGLQALSGM 127
W VPW+H+ FEN + A SG+EA +K +G + K +A GGDG + DIG Q +SG
Sbjct: 66 WDVPWIHIGFENGSTAISGVEAMYKALVNKGRYQGQRPKFVAFGGDGASYDIGFQFISGC 125
Query: 128 LERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAH 187
+ERGH++ Y+ DNE Y NTG QRS STP GA T+T+P G S G+ KK + I A+H
Sbjct: 126 MERGHDMTYICLDNENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASH 185
Query: 188 MIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIARLAIETG 247
+PYVA S D KK+K A +GP F+ C T W+ K IE+A +A+++
Sbjct: 186 GVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFNSNKTIELADMAVDSL 245
Query: 248 MWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLFKR-- 305
M+PLFE+ NG I +P ++ P+ +YL Q RFKHLFK+
Sbjct: 246 MFPLFEVFNGRELKITYRP-----------RNII------PVRDYLGAQKRFKHLFKKEN 288
Query: 306 PEAIDELRNQIKAMWKVL 323
I+EL+ + W+ L
Sbjct: 289 EHIIEELQKDVNERWEYL 306
>gb|AAK41453.1| Pyruvate synthase beta chain (Pyruvic-ferredoxin oxidoreductase
beta chain) (porB-1) [Sulfolobus solfataricus]
Length = 300
Score = 212 bits (535), Expect = 4e-54
Identities = 126/321 (39%), Positives = 174/321 (53%), Gaps = 32/321 (9%)
Query: 4 MAVRKPPITTREY--WAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATG 61
MAV +T + + G+AAC GC L +A + N +
Sbjct: 1 MAVLSSQVTPKRMPKFYRGNAACPGCPIPKELDVALEVLG----------NKTVLVVPAS 50
Query: 62 CMEVVSAVFPYTAWKVPWVHVAFENAAAAASGIEAAWKKKGIKGKILAI-GGDGGTADIG 120
C ++ VP VH AF AAA SGI + + +G I+A+ GDG T DIG
Sbjct: 51 CTTIIMGDTNGMPSTVPVVHSAFGAAAAIGSGIVRSLRMRGDNDAIVAVWAGDGSTGDIG 110
Query: 121 LQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWV 180
A+SG ER +++Y+ YDNEAYMNTGIQRS TP GAWTTT+P GK + KK +
Sbjct: 111 FAAVSGAAERNEDILYICYDNEAYMNTGIQRSGLTPKGAWTTTTPEGKREV-----KKPL 165
Query: 181 ALIAAAHMIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIA 240
I A H +PYVATASI +D+ K++KA ++ G ++ + CP GWR + I+IA
Sbjct: 166 PFIIAEHKVPYVATASIAYIYDYEAKMRKAKQIRGFRYIHLLSPCPPGWRFDSKLTIDIA 225
Query: 241 RLAIETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFK 300
+LA+ETG+WPLFEIENG+ K+ +V + +KP+ EYLK QGRFK
Sbjct: 226 KLAVETGVWPLFEIENGEF------------KLTSVSKTLVEKKNRKPVAEYLKLQGRFK 273
Query: 301 HLFKRPEAIDELRNQIKAMWK 321
L + E I ++ +I MW+
Sbjct: 274 QLTE--EQIKGIQEEIDEMWE 292
>gb|AAK42866.1| Pyruvate synthase beta chain (Pyruvic-ferredoxin oxidoreductase
beta chain) (porB-2) [Sulfolobus solfataricus]
Length = 299
Score = 206 bits (519), Expect = 3e-52
Identities = 119/304 (39%), Positives = 165/304 (54%), Gaps = 29/304 (9%)
Query: 20 GHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTAWKVPW 79
G +AC GC A+R+ + + + GC V+ PY A+ P
Sbjct: 18 GTSACPGCPENMAMRMLGMGLGKDV----------VLVVVAGCSSVIQGNAPYNAYNFPT 67
Query: 80 VHVAFENAAAAASGIEAAWKKKGIKGKILAIGGDGGTADIGLQALSGMLERGHNVVYLMY 139
V+VAF A A+G+ A+K+KG I+ GDGG+ADIG +LSG ER N++YL
Sbjct: 68 VNVAFAAGPATAAGLARAYKQKGKNVTIVVWAGDGGSADIGFASLSGAAERNDNILYLTV 127
Query: 140 DNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHMIPYVATASIGN 199
DNEAYMN+G QRS STP+GA TTT+P GK KK + L+ AH +PYVATAS+G
Sbjct: 128 DNEAYMNSGGQRSGSTPFGAITTTTPEGK-----KENKKNLPLLMIAHNVPYVATASVGY 182
Query: 200 PFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIARLAIETGMWPLFEIENGDI 259
P D+++K+KKA +V+G +V V P GW K +E+A+LA++T WPLFE NG +
Sbjct: 183 PHDYIEKLKKARQVEGFRYVHVLTPDPYGWLFDPSKTVEVAKLAVQTCYWPLFEYYNGKL 242
Query: 260 WHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLFKRPEAIDELRNQIKAM 319
+ E + ++PI ++L QGRFK L E I L I +
Sbjct: 243 ------------NISSESLHCLDRRTRRPIRDFLSIQGRFKKL--TDEQIKILEQYIDNL 288
Query: 320 WKVL 323
W+ L
Sbjct: 289 WEKL 292
>gi|11499634 2-ketoisovalerate ferredoxin oxidoreductase, subunit beta (vorB)
[Archaeoglobus fulgidus] >gi|7431603|pir||C69506
probable 2-oxoisovalerate--ferredoxin oxidoreductase (EC
1.2.7.-) beta chain AF2052 [similarity] - Archaeoglobus
fulgidus >gi|2648477|gb|AAB89197.1| (AE000961)
2-ketoisovalerate ferredoxin oxidoreductase, subunit
beta (vorB) [Archaeoglobus fulgidus]
Length = 278
Score = 194 bits (487), Expect = 2e-48
Identities = 121/305 (39%), Positives = 171/305 (55%), Gaps = 34/305 (11%)
Query: 19 PGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTAWKVP 78
PG+A+C GC + A+R + N + A GC V++ + P +A K P
Sbjct: 4 PGNASCQGCPISMAMRCLDEI-----------ENPVLVIPA-GCSTVIAGLHPKSAMKCP 51
Query: 79 WVHVAFENAAAAASGIEAAWKKKGIKGKILAIGGDGGTADIGLQALSGMLERGHNVVYLM 138
VHV F + + A G+ A+KK G+ ++A GDG ADIG ALS R +++ ++
Sbjct: 52 VVHVPFASTHSVACGLSEAYKKLGVGATVVAWMGDGA-ADIGFAALSASATRKDDILTVV 110
Query: 139 YDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHMIPYVATASIG 198
DNEAYMNTG Q S ST + A TTTSP GK EDR +AL+ AH + YVATAS+G
Sbjct: 111 VDNEAYMNTGTQSSLSTFWKAKTTTSPKGKT---EDRRN--LALVMLAHKVDYVATASVG 165
Query: 199 NPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIARLAIETGMWPLFEIENGD 258
D +K + A K DG F+ VH CP GWR P EK +E+AR A+ +G W L+E +
Sbjct: 166 YIHDLRRKFRIAGKKDGFRFLHVHAPCPPGWRFPSEKTVEVARKAVMSGAWILWEYDG-- 223
Query: 259 IWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLFKRPEAIDELRNQIKA 318
+ + PP ++ Y +G + P+EEYL QGRF+HL + E I+E+ +I+
Sbjct: 224 --KLTLSPP---SRKYADGSERI------PLEEYLS-QGRFQHLSR--EDIEEIERRIEE 269
Query: 319 MWKVL 323
WK+L
Sbjct: 270 EWKLL 274
>gb|AAK42309.1| Pyruvate synthase beta chain (Pyruvic-ferredoxin oxidoreductase
beta chain) (porB-like) [Sulfolobus solfataricus]
Length = 338
Score = 183 bits (459), Expect = 3e-45
Identities = 116/328 (35%), Positives = 168/328 (50%), Gaps = 38/328 (11%)
Query: 15 EYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTA 74
E++ GH C GC A +R KA P I ATGCM V + + T+
Sbjct: 25 EFYTSGHRTCQGCESALVMRFLAKA---------AGPRTIVIG-ATGCMYVANTTYYTTS 74
Query: 75 WKVPWVHVAFENAAAAASGIEAAWKKKGIKGKI-------LAIGGDGGTADIGLQALSGM 127
W VPWVH AAA G AA + KGKI +A GD G AD+GL +S
Sbjct: 75 WIVPWVHTQLGGTGAAALGTAAALRALMRKGKIKQEPINVIAFCGDLGCADMGLSGVSNA 134
Query: 128 LERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKY-SIGEDRPKKWVA--LIA 184
+ +N++ ++YDNE+ NT IQ +S TP+GA T+ S PGK I + R KK V +IA
Sbjct: 135 MTYDYNLLIILYDNESSANTDIQETSMTPFGAQTSFSRPGKQRRIMKKRWKKSVVPMIIA 194
Query: 185 AAHMIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIARLAI 244
+ Y AT + P D + K++KA + GP F+ CP GW + E+ LA+
Sbjct: 195 GHRNVRYAATMTPAYPLDSMNKIRKALTIGGPTFIHSLDPCPKGWDYDPKFSHELGVLAV 254
Query: 245 ETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVV---RIEFKKPIEEYLKYQGRFKH 301
ETG+WPL+E +G+I VY E + + R++ +KP++EYL+ QGRF H
Sbjct: 255 ETGLWPLYEYIDGEI-------------VYNEPTKSIVEGRMK-RKPVKEYLEKQGRFSH 300
Query: 302 LFKRP-EAIDELRNQIKAMWKVLGVEAI 328
+ E + + +++ W++ GV I
Sbjct: 301 FTEEDIEYVQRMVDEMYEEWEIPGVMPI 328
>pir||S74042 probable pyruvate synthase (EC 1.2.7.1) beta chain - Sulfolobus
solfataricus >gi|1707736|emb|CAA69456.1| (Y08256)
pyruvate-ferredoxin oxidoreductase beta-2 [Sulfolobus
solfataricus]
Length = 338
Score = 183 bits (459), Expect = 3e-45
Identities = 116/328 (35%), Positives = 168/328 (50%), Gaps = 38/328 (11%)
Query: 15 EYWAPGHAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTA 74
E++ GH C GC A +R KA P I ATGCM V + + T+
Sbjct: 25 EFYTSGHRTCQGCESALVMRFLAKA---------AGPRTIVIG-ATGCMYVANTTYYTTS 74
Query: 75 WKVPWVHVAFENAAAAASGIEAAWKKKGIKGKI-------LAIGGDGGTADIGLQALSGM 127
W VPWVH AAA G AA + KGKI +A GD G AD+GL +S
Sbjct: 75 WIVPWVHTQLGGTGAAALGTAAALRALMRKGKIKQEPINVIAFCGDLGCADMGLSGVSNA 134
Query: 128 LERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKY-SIGEDRPKKWVA--LIA 184
+ +N++ ++YDNE+ NT IQ +S TP+GA T+ S PGK I + R KK V +IA
Sbjct: 135 MTYDYNLLIILYDNESSANTDIQETSMTPFGAQTSFSRPGKQRRIMKKRWKKSVVPMIIA 194
Query: 185 AAHMIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIARLAI 244
+ Y AT + P D + K++KA + GP F+ CP GW + E+ LA+
Sbjct: 195 GHRNVRYAATMTPAYPLDSMNKIRKALTIGGPTFIHSLDPCPKGWDYDPKFSHELGVLAV 254
Query: 245 ETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVV---RIEFKKPIEEYLKYQGRFKH 301
ETG+WPL+E +G+I VY E + + R++ +KP++EYL+ QGRF H
Sbjct: 255 ETGLWPLYEYIDGEI-------------VYNEPTKSIVEGRMK-RKPVKEYLEKQGRFSH 300
Query: 302 LFKRP-EAIDELRNQIKAMWKVLGVEAI 328
+ E + + +++ W++ GV I
Sbjct: 301 FTEEDIEYVQRMVDEMYEEWEIPGVMPI 328
>emb|CAA70873.1| (Y09702) pyruvate-ferredoxin oxidoreductase [Desulfovibrio africanus]
Length = 1232
Score = 97.9 bits (240), Expect = 2e-19
Identities = 100/372 (26%), Positives = 147/372 (38%), Gaps = 108/372 (29%)
Query: 23 ACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTAWKV----- 77
AC+GCG +R+ T+ F E M IA ATGC + A P +K
Sbjct: 811 ACSGCGETPYVRVITQLFGERM----------FIANATGCSSIWGASAPSMPYKTNRLGQ 860
Query: 78 --PWVHVAFENAAA-------------------AASGIEA-------------------- 96
W + FE+AA AA +E+
Sbjct: 861 GPAWGNSLFEDAAEYGFGMNMSMFARRTHLADLAAKALESDASGDVKEALQGWLAGKNDP 920
Query: 97 --------------AWKKKGIKGKILAI------------GGDGGTADIGLQALSGMLER 130
A +K G+ G+I A+ GGDG DIG L +L
Sbjct: 921 IKSKEYGDKLKKLLAGQKDGLLGQIAAMSDLYTKKSVWIFGGDGWAYDIGYGGLDHVLAS 980
Query: 131 GHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHMIP 190
G +V + D E Y NTG Q S +TP GA + GK + KK +A + +
Sbjct: 981 GEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRT-----GKKDLARMVMTYGYV 1035
Query: 191 YVATASIG-NPFDFVKKVKKAAKVDGPAFVQVHCTC-PTGWRTPLEKGIEIARLAIETGM 248
YVAT S+G + F+K +K+A GP+ V + TC G R + K ++ A+++G
Sbjct: 1036 YVATVSMGYSKQQFLKVLKEAESFPGPSLVIAYATCINQGLRKGMGKSQDVMNTAVKSGY 1095
Query: 249 WPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKP---IEEYLKYQGRFKHLFKR 305
WPLF + ++ +G +++ K P +EE+L Q RF L +
Sbjct: 1096 WPLFRYD---------------PRLAAQGKNPFQLDSKAPDGSVEEFLMAQNRFAVLDRS 1140
Query: 306 -PEAIDELRNQI 316
PE LR Q+
Sbjct: 1141 FPEDAKRLRAQV 1152
>pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase From
Desulfovibrio Africanus >gi|4558092|pdb|1B0P|B Chain B,
Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus >gi|4558221|pdb|2PDA|A Chain
A, Crystal Structure Of The Complex Between Pyruvate-
Ferredoxin Oxidoreductase From Desulfovibrio Africanus
And Pyruvate. >gi|4558222|pdb|2PDA|B Chain B, Crystal
Structure Of The Complex Between Pyruvate- Ferredoxin
Oxidoreductase From Desulfovibrio Africanus And Pyruvate
Length = 1231
Score = 97.9 bits (240), Expect = 2e-19
Identities = 100/372 (26%), Positives = 147/372 (38%), Gaps = 108/372 (29%)
Query: 23 ACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTAWKV----- 77
AC+GCG +R+ T+ F E M IA ATGC + A P +K
Sbjct: 810 ACSGCGETPYVRVITQLFGERM----------FIANATGCSSIWGASAPSMPYKTNRLGQ 859
Query: 78 --PWVHVAFENAAA-------------------AASGIEA-------------------- 96
W + FE+AA AA +E+
Sbjct: 860 GPAWGNSLFEDAAEYGFGMNMSMFARRTHLADLAAKALESDASGDVKEALQGWLAGKNDP 919
Query: 97 --------------AWKKKGIKGKILAI------------GGDGGTADIGLQALSGMLER 130
A +K G+ G+I A+ GGDG DIG L +L
Sbjct: 920 IKSKEYGDKLKKLLAGQKDGLLGQIAAMSDLYTKKSVWIFGGDGWAYDIGYGGLDHVLAS 979
Query: 131 GHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHMIP 190
G +V + D E Y NTG Q S +TP GA + GK + KK +A + +
Sbjct: 980 GEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRT-----GKKDLARMVMTYGYV 1034
Query: 191 YVATASIG-NPFDFVKKVKKAAKVDGPAFVQVHCTC-PTGWRTPLEKGIEIARLAIETGM 248
YVAT S+G + F+K +K+A GP+ V + TC G R + K ++ A+++G
Sbjct: 1035 YVATVSMGYSKQQFLKVLKEAESFPGPSLVIAYATCINQGLRKGMGKSQDVMNTAVKSGY 1094
Query: 249 WPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKP---IEEYLKYQGRFKHLFKR 305
WPLF + ++ +G +++ K P +EE+L Q RF L +
Sbjct: 1095 WPLFRYD---------------PRLAAQGKNPFQLDSKAPDGSVEEFLMAQNRFAVLDRS 1139
Query: 306 -PEAIDELRNQI 316
PE LR Q+
Sbjct: 1140 FPEDAKRLRAQV 1151
>gb|AAB49653.1| (U30149) pyruvate:ferredoxin oxidoreductase [Entamoeba histolytica]
Length = 1162
Score = 97.5 bits (239), Expect = 2e-19
Identities = 71/211 (33%), Positives = 106/211 (49%), Gaps = 20/211 (9%)
Query: 110 IGGDGGTADIGLQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKY 169
+GGDG DIG + +L GHNV L+ D E Y NTG Q+S +T GA +
Sbjct: 954 VGGDGWAYDIGYNGVDHVLASGHNVNILVLDTEMYSNTGGQKSKATNLGAVVKFA----- 1008
Query: 170 SIGEDRPKKWVALIAAAHMIPYVATASIG-NPFDFVKKVKKAAKVDGPAFVQVHCTCPTG 228
S G RPKK + IA A+ YVA+ ++G NP K K+A +G + + +C C
Sbjct: 1009 SSGCKRPKKDLGAIAMAYGDVYVASIALGANPAQAFKAFKEAESYNGVSLIIAYCPCKE- 1067
Query: 229 WRTPLEKGIEIARLAIETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKP 288
PL+K IE A++A+ +G W L+ + ++ G K G ++ E K
Sbjct: 1068 QGVPLQKSIEEAKMAVNSGYWSLYRYDP------RLVEQG------KPGLQLDCSEVKGD 1115
Query: 289 IEEYLKYQGRFKHLFKR-PEAIDELRNQIKA 318
+E +L + RF L ++ E D+L Q+KA
Sbjct: 1116 LEAFLARENRFALLGRKDKETADKLHAQLKA 1146
>pir||S58236 pyruvate (flavodoxin) dehydrogenase (EC 1.2.99.-) - Entamoeba
histolytica >gi|929587|emb|CAA90575.1| (Z50193) pyruvate
oxidoreductase [Entamoeba histolytica]
Length = 1165
Score = 95.6 bits (234), Expect = 8e-19
Identities = 71/211 (33%), Positives = 105/211 (49%), Gaps = 21/211 (9%)
Query: 110 IGGDGGTADIGLQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKY 169
+GGDG DIG + +L GHNV L+ D E Y NTG Q+S +T GA +
Sbjct: 958 VGGDGWAYDIGYNGVDHVLASGHNVNILVLDTEMYSNTGGQKSKATNLGAVVKFA----- 1012
Query: 170 SIGEDRPKKWVALIAAAHMIPYVATASIG-NPFDFVKKVKKAAKVDGPAFVQVHCTCPTG 228
S G RPKK + IA A+ YVA+ ++G NP K K+A +G +C P
Sbjct: 1013 SSGCKRPKKDLGAIAMAYGDVYVASIALGANPAQAFKAFKEAESYNG--VFSYYCLLPCK 1070
Query: 229 WRTPLEKGIEIARLAIETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKKP 288
R+P+ K IE A++A+ +G W L+ + ++ G K G ++ E K
Sbjct: 1071 SRSPITKSIEEAKMAVNSGYWSLYRYDP------RLVEQG------KPGLQLDCSEVKGD 1118
Query: 289 IEEYLKYQGRFKHLFKR-PEAIDELRNQIKA 318
+E +L + RF L ++ E D+L Q+KA
Sbjct: 1119 LEAFLARENRFALLGRKDKETADKLHAQLKA 1149
>pir||D70403 ferredoxin oxidoreductase beta subunit - Aquifex aeolicus
>gi|2983645|gb|AAC07212.1| (AE000728) ferredoxin
oxidoreductase beta subunit [Aquifex aeolicus]
Length = 286
Score = 89.7 bits (219), Expect = 4e-17
Identities = 68/211 (32%), Positives = 95/211 (44%), Gaps = 25/211 (11%)
Query: 21 HAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTAWKVPWV 80
H+ CAGC + A R + P I +TGC S VFP+ A V
Sbjct: 49 HSLCAGCPESAAFRYILASLPS--------PEDTVIVNSTGC---TSLVFPHIALHT--V 95
Query: 81 HVAFENAAAAASGIEAA--WKKKGIKGKILAIGGDGGTADIGLQALSGMLERGHNVVYLM 138
H F N A ASGI+ W+ ++ I GDG T DIGL R + +
Sbjct: 96 HPLFGNQNAVASGIKRVLEWRFPDKPKDVVVIAGDGATIDIGLDCTLQSFFRQEKITTIC 155
Query: 139 YDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKW-VALIAAAHMIPYVATASI 197
+DNE Y NTG Q S +TP G +P GK D+ W +A+ + H YVA ++
Sbjct: 156 FDNEVYANTGGQDSGATPRGMEFKMAPGGKQ---WDKVPMWQLAIDSGCH---YVARLTV 209
Query: 198 GNPFDFVKKVKKA---AKVDGPAFVQVHCTC 225
+P + VKKA A+ GP ++ ++ C
Sbjct: 210 SSPKKVEQVVKKAIYVAREVGPTYIHLYTPC 240
>sp|Q53046|NIFJ_RHORU PYRUVATE-FLAVODOXIN OXIDOREDUCTASE >gi|628896|pir||S41961 pyruvate
oxidoreductase - Rhodospirillum rubrum
>gi|453436|emb|CAA54651.1| (X77515) pyruvate
oxidoreductase [Rhodospirillum rubrum]
Length = 1191
Score = 88.9 bits (217), Expect = 8e-17
Identities = 64/213 (30%), Positives = 104/213 (48%), Gaps = 30/213 (14%)
Query: 98 WKKKGIKGK--------ILAIGGDGGTADIGLQALSGMLERGHNVVYLMYDNEAYMNTGI 149
W+ + ++G + +GGDG DIG L ++ G NV L+ D E Y NTG
Sbjct: 954 WQARALEGLADYLVEKVVWIVGGDGWAYDIGYAGLDHVISSGRNVNILVMDTEVYSNTGG 1013
Query: 150 QRSSSTPYGAWTTTSPPGKYSI-GEDRPKKWVALIAAAHMIPYVATASIG-NPFDFVKKV 207
Q+S STP GA K+S+ G+ PKK + IA A+ YVA+ + G + ++ +
Sbjct: 1014 QQSKSTPIGA------SAKFSVAGKALPKKDLGQIAMANGHVYVASIAFGASDNQTLRAL 1067
Query: 208 KKAAKVDGPAFVQVHCTCPTGWRTPLEKGIEIARLAIETGMWPLFEIENGDIWHIKIQPP 267
+A +GP+ + + C L G+ +LAIETG WPL+ + +
Sbjct: 1068 SEAVSYEGPSLIIAYSHC-IAHGYDLTCGLSQQKLAIETGYWPLYRFDP--------RKM 1118
Query: 268 GGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFK 300
G G + +G ++ +PI +Y+ +GRF+
Sbjct: 1119 GVGPALSLDG-----VQPSRPIGDYMANEGRFR 1146
>pir||S70963 pyruvate (flavodoxin) dehydrogenase (EC 1.2.99.-) - Rhodospirillum
rubrum
Length = 1191
Score = 88.5 bits (216), Expect = 1e-16
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 22/193 (11%)
Query: 110 IGGDGGTADIGLQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKY 169
+GGDG DIG L ++ G NV L+ D E Y NTG Q+S STP GA K+
Sbjct: 974 VGGDGWAYDIGYAGLDHVISSGRNVNILVMDTEVYSNTGGQQSKSTPIGA------SAKF 1027
Query: 170 SI-GEDRPKKWVALIAAAHMIPYVATASIG-NPFDFVKKVKKAAKVDGPAFVQVHCTCPT 227
S+ G+ PKK + IA A+ YVA+ + G + ++ + +A +GP+ + + C
Sbjct: 1028 SVAGKALPKKDLGQIAMANGHVYVASIAFGASDNQTLRALSEAVSYEGPSLIIAYSHC-I 1086
Query: 228 GWRTPLEKGIEIARLAIETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKK 287
L G+ +LAIETG WPL+ + + G G + +G ++ +
Sbjct: 1087 AHGYDLTCGLSQQKLAIETGYWPLYRFDP--------RKMGVGPALSLDG-----VQPSR 1133
Query: 288 PIEEYLKYQGRFK 300
PI +Y+ +GRF+
Sbjct: 1134 PIGDYMANEGRFR 1146
>pir||A71047 probable ferredoxin oxidoreductase beta subunit - Pyrococcus
horikoshii >gi|3258094|dbj|BAA30777.1| (AP000006) 284aa
long hypothetical ferredoxin oxidoreductase beta subunit
[Pyrococcus horikoshii]
Length = 284
Score = 86.6 bits (211), Expect = 4e-16
Identities = 84/308 (27%), Positives = 132/308 (42%), Gaps = 51/308 (16%)
Query: 22 AACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTAWKVPWVH 81
A C GCG T L AF+ A+++ DP + GC +++ PY + +H
Sbjct: 23 ALCPGCGGGTVLN----AFANAIDQLKIDPRDLVVVSGIGCSAWIAS--PY--FLADTLH 74
Query: 82 VAFENAAAAASGIEAAWKKKGIKGK-ILAIGGDGGTADIGLQALSGMLERGHNVVYLMYD 140
A A A+G+ K G+ K ++ I GDG A IG L R ++ ++ +
Sbjct: 75 TTHGRAIAFATGV-----KVGLPDKYVVVISGDGDLASIGGNHLIHAARRNVDITVILVN 129
Query: 141 NEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHMIPYVATASIGNP 200
N Y TG Q + +TP+GA TTT+P + P K +AAA YVA + +
Sbjct: 130 NFIYGMTGGQVAPTTPFGAITTTTPYRNI----EHPLKVAETVAAAG-ASYVARWTTAHV 184
Query: 201 FDFVKKVKKAAKVDGPAFVQVHCTCPT--GWRTPLEKGIEIARLAIETGMWPLFEIENGD 258
+ ++ +KKA G + V+V CP G R +++ E+ R
Sbjct: 185 YQLIESIKKALMTKGFSLVEVISQCPVQFGRRNKMKEPAEMLR----------------- 227
Query: 259 IWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLFKRPEAIDELRNQIKA 318
W +K P AK E +E K + E++K KRPE + EL I
Sbjct: 228 -WFLKNSIPISKAKNMSE----EELEGKFVVGEFVKR--------KRPEFVTELNKLIDE 274
Query: 319 MWKVLGVE 326
+ + G++
Sbjct: 275 VQERFGLK 282
>dbj|BAB12024.1| (AB021127) pyruvate:NADP+ oxidoreductase [Euglena gracilis]
Length = 1803
Score = 86.2 bits (210), Expect = 5e-16
Identities = 66/213 (30%), Positives = 102/213 (46%), Gaps = 27/213 (12%)
Query: 110 IGGDGGTADIGLQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTTSPPGKY 169
IGGDG DIG L +L G N+ L+ D E Y NTG Q S ST + K+
Sbjct: 1027 IGGDGWANDIGFGGLDHVLASGQNLNVLVLDTEMYSNTGGQASKSTHMAS------VAKF 1080
Query: 170 SIGEDRP-KKWVALIAAAHMIPYVATASIGNPFDFVKKVKKAAKVDGPAFVQVHCTC-PT 227
++G R KK + +A ++ YVAT S GN VK +A DGP+ + + C
Sbjct: 1081 ALGGKRTNKKNLTEMAMSYGNVYVATVSHGNMAQCVKAFVEAESYDGPSLIVGYAPCIEH 1140
Query: 228 GWRTPLEKGIEIARLAIETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVRIEFKK 287
G R + + ++ + AI TG WPL+ + ++ EG +++ K+
Sbjct: 1141 GLRAGMARMVQESEAAIATGYWPLYRFD---------------PRLATEGKNPFQLDSKR 1185
Query: 288 ---PIEEYLKYQGRFKHLFK-RPEAIDELRNQI 316
++EYL Q R+ +L K P+ D L++Q+
Sbjct: 1186 IKGNLQEYLDRQNRYVNLKKNNPKGADLLKSQM 1218
>pir||D75168 2-ketoglutarate ferredoxin oxidoreductase, chain beta (korb-1)
PAB0344 - Pyrococcus abyssi (strain Orsay)
>gi|5457937|emb|CAB49427.1| (AJ248284) 2-ketoglutarate
ferredoxin oxidoreductase, subunit beta (korB-1)
[Pyrococcus abyssi]
Length = 284
Score = 85.8 bits (209), Expect = 7e-16
Identities = 83/308 (26%), Positives = 132/308 (41%), Gaps = 51/308 (16%)
Query: 22 AACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTAWKVPWVH 81
A C GCG T L AF+ A+++ DP + GC +++ PY + +H
Sbjct: 23 ALCPGCGGGTVLN----AFANAIDQLKIDPRDLVVVSGIGCSAWIAS--PY--FLADTLH 74
Query: 82 VAFENAAAAASGIEAAWKKKGIKGK-ILAIGGDGGTADIGLQALSGMLERGHNVVYLMYD 140
A A A+G+ K G+ K ++ I GDG A IG L R ++ ++ +
Sbjct: 75 TTHGRAIAFATGV-----KVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVN 129
Query: 141 NEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHMIPYVATASIGNP 200
N Y TG Q + +TP+GA TTT+P + P K +AAA YVA + +
Sbjct: 130 NFIYGMTGGQVAPTTPFGAITTTTPYRNI----EHPLKIAETVAAAG-ASYVARWTTAHV 184
Query: 201 FDFVKKVKKAAKVDGPAFVQVHCTCPT--GWRTPLEKGIEIARLAIETGMWPLFEIENGD 258
+ ++ +K+A G + V+V CP G R +++ E+ R
Sbjct: 185 YQLIESIKRAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLR----------------- 227
Query: 259 IWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLFKRPEAIDELRNQIKA 318
W +K P AK E +E K I E++K + RPE + EL I
Sbjct: 228 -WFLKNSVPISKAKKMSE----EELEGKFVIGEFVKRE--------RPEFVSELNKLIDE 274
Query: 319 MWKVLGVE 326
+ + G++
Sbjct: 275 VQEKFGLK 282
>dbj|BAA95606.1| (AB042412) pyruvate:ferredoxin oxidoreductase beta subunit
[Hydrogenobacter thermophilus]
Length = 286
Score = 84.3 bits (205), Expect = 2e-15
Identities = 66/211 (31%), Positives = 93/211 (43%), Gaps = 25/211 (11%)
Query: 21 HAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTAWKVPWV 80
H+ CAGC + ALR + +P I +TGC S VFP+ A V
Sbjct: 49 HSLCAGCPESMALRYILASLP--------NPEDTIIVNSTGC---TSLVFPHIALHT--V 95
Query: 81 HVAFENAAAAASGIEAA--WKKKGIKGKILAIGGDGGTADIGLQALSGMLERGHNVVYLM 138
H F N A ASGI+ W+ ++ + GDG DIGL R + +
Sbjct: 96 HSLFGNQNAVASGIKRVLEWRFPDKVKDVVVLAGDGAIVDIGLDCTLQSFFRQEKITTIC 155
Query: 139 YDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKW-VALIAAAHMIPYVATASI 197
+DNE Y NTG Q S T G +P GK D+ W +A+ + H YVA ++
Sbjct: 156 FDNEVYANTGGQESGMTVKGHVFKMAPKGKQ---WDKVPMWQIAIDSGCH---YVARLTV 209
Query: 198 GNPFDFVKKVKKA---AKVDGPAFVQVHCTC 225
+P +KKA A+ GP +V ++ C
Sbjct: 210 SSPKRVESVIKKAIYVAREVGPTYVHLYTPC 240
>pir||G71262 probable pyruvate (flavodoxin) dehydrogenase (EC 1.2.99.-) TP0939 -
syphilis spirochete >gi|3323259|gb|AAC65895.1| (AE001262)
pyruvate oxidoreductase [Treponema pallidum]
Length = 1184
Score = 82.7 bits (201), Expect = 6e-15
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 7/154 (4%)
Query: 103 IKGKILAIGGDGGTADIGLQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTT 162
IK + GGDG DIG L +L G N+ L+ D E Y NTG Q S +TP GA
Sbjct: 968 IKRSVWIFGGDGWAYDIGYGGLDHVLASGRNITVLVMDTEVYSNTGGQMSKATPIGAVAK 1027
Query: 163 TSPPGKYSIGEDRPKKWVALIAAAHMIPYVATASIG-NPFDFVKKVKKAAKVDGPAFVQV 221
+ GK + KK + L+A ++ YVA ++G N VK ++A DGP+ +
Sbjct: 1028 FAAAGK-----EISKKDIGLMAMSYGYVYVARVAMGANMSQVVKAFREAESYDGPSLIVA 1082
Query: 222 HCTCPTGWRTPLEKGIEIARLAIETGMWPLFEIE 255
+ C + KG+ + A+ G+WPL+ +
Sbjct: 1083 YSHC-ISHGIDMSKGMINQKEAVACGLWPLYRYD 1115
>pir||E71046 probable ferredoxin oxidoreductase beta subunit - Pyrococcus
horikoshii >gi|3258090|dbj|BAA30773.1| (AP000006) 281aa
long hypothetical ferredoxin oxidoreductase beta subunit
[Pyrococcus horikoshii]
Length = 281
Score = 77.3 bits (187), Expect = 2e-13
Identities = 83/305 (27%), Positives = 123/305 (40%), Gaps = 50/305 (16%)
Query: 24 CAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTAWKVPWVHVA 83
C GCG + L+ +A ++E DP+ GC V + +H
Sbjct: 24 CPGCGIGSVLQFTLRA----IDELGLDPDKIVWVSGIGCSSRVPGFVNFDG-----LHTT 74
Query: 84 FENAAAAASGIEAAWKKKGIKGKILAIGGDGGTADIGLQALSGMLERGHNVVYLMYDNEA 143
A A A+GI+ A + KI+A GDG A IG L + R +V ++ +N
Sbjct: 75 HGRALAFATGIKLANPEL----KIIAFMGDGDAAAIGGNHLIHAIRRNLDVTVILINNFT 130
Query: 144 YMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHMIPYVATASIGNPFDF 203
Y TG Q + +TP G TT+P G++ D +A +A A YVA ++ N
Sbjct: 131 YGMTGGQVAPTTPKGLRGTTAPYGQFENPFD-----IAQLAVAAGANYVARWTVFNYIQG 185
Query: 204 VKKVKKAAKVDGPAFVQVHCTCPT--GWRTPLEKGIEIARLAIETGMWPLFEIENGDIWH 261
+ +KKA +G + V+ CP G R ++ EI R W+
Sbjct: 186 INSIKKALTKEGFSLVEFLSPCPISFGRRNKMKTAPEIIR------------------WY 227
Query: 262 IKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLFKRPEAIDELRNQIKAMWK 321
KI P AK K +E K I E++ RP + E R IK K
Sbjct: 228 QKITVPINKAKKMKP----EELEGKIIIGEFVDR--------NRPGLVREYREYIKRAKK 275
Query: 322 VLGVE 326
++G E
Sbjct: 276 MMGWE 280
>pir||T18528 probable pyruvate (flavodoxin) dehydrogenase (EC 1.2.99.-) - Giardia
intestinalis >gi|960283|gb|AAA74894.1| (L27221)
pyruvate:ferredoxin oxidoreductase [Giardia intestinalis]
Length = 1253
Score = 75.7 bits (183), Expect = 7e-13
Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 38/240 (15%)
Query: 103 IKGKILAIGGDGGTADIGLQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTT 162
IK +GGDG DI ++ V L+ N + NTG Q+S +T G+
Sbjct: 1028 IKASHWLVGGDGWAYDIDFAGFDHIVASRDRVRVLVLVNHCFGNTGGQKSKATSIGSVMK 1087
Query: 163 TSPPGKYSIGEDRPKKWVALIAAAHMIPYVATASIG-NPFDFVKKVKKAAKVDGPAFVQV 221
+ YS + KK ++ + + YVA S+G N ++ ++A DGPA V
Sbjct: 1088 NA----YSGVNVKDKKMGVMLMSTYRDVYVAQISLGYNRNQALQVFREAEHFDGPAVVLA 1143
Query: 222 HCTCPT----GWRTPLEKGIEIARLAIETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEG 277
+C C + G T E+ +LA+ETG+WP+F K
Sbjct: 1144 YCPCISHMVQGGLTHQERQ---QKLAVETGVWPVFRYNPS-----------------KPI 1183
Query: 278 GRVVRIEFK---KPIEEYLKYQGRFKHLFKRPEAIDE-----LRNQIKAMWKVL-GVEAI 328
G +++E+K KP+++++ + RF L KR A E L++ ++ WKVL G++AI
Sbjct: 1184 GDRMKLEYKGPIKPVKDFMNTEQRFGALAKRDPARFEEMAAALQSDVEEHWKVLQGLKAI 1243
>gb|AAC18834.1| (AF064550) putative pyruvate-ferredoxin oxidoreductase [Clostridium
pasteurianum]
Length = 369
Score = 74.9 bits (181), Expect = 1e-12
Identities = 56/183 (30%), Positives = 87/183 (46%), Gaps = 13/183 (7%)
Query: 103 IKGKILAIGGDGGTADIGLQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTT 162
IK IGGDG DIG L ++ G +V + D E Y NTG Q S STP GA
Sbjct: 150 IKKSQWIIGGDGWAYDIGFGGLDQVISTGDDVNIFVLDTEIYSNTGGQSSKSTPTGATAK 209
Query: 163 TSPPGKYSIGEDRPKKWVALIAAAHMIPYVATASIG-NPFDFVKKVKKAAKVDGPAFVQV 221
+ GK + KK + ++A ++ YVA ++G N +K + +A DGP+ +
Sbjct: 210 FAAAGKKT-----RKKDLGMMAMSYGYVYVAQIAMGANMNQTIKAITEAESYDGPSLIIA 264
Query: 222 HCTCPT-GWRTPLEKGIEIARLAIETGMW------PLFEIENGDIWHIKIQPPGGGAKVY 274
+ C + G R+ + I + A+ TG W PL + E + + ++ + P G K +
Sbjct: 265 YAPCISHGIRSGMGTSIMEQKKAVNTGYWHLYRFSPLLKEEGKNPFVLESKEPTGEFKNF 324
Query: 275 KEG 277
G
Sbjct: 325 ING 327
>emb|CAB43933.1| (Y17726) pyruvate ferredoxin oxidoreductase [Clostridium
pasteurianum]
Length = 1175
Score = 74.9 bits (181), Expect = 1e-12
Identities = 56/183 (30%), Positives = 87/183 (46%), Gaps = 13/183 (7%)
Query: 103 IKGKILAIGGDGGTADIGLQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTT 162
IK IGGDG DIG L ++ G +V + D E Y NTG Q S STP GA
Sbjct: 956 IKKSQWIIGGDGWAYDIGFGGLDQVISTGDDVNIFVLDTEIYSNTGGQSSKSTPTGATAK 1015
Query: 163 TSPPGKYSIGEDRPKKWVALIAAAHMIPYVATASIG-NPFDFVKKVKKAAKVDGPAFVQV 221
+ GK + KK + ++A ++ YVA ++G N +K + +A DGP+ +
Sbjct: 1016 FAAAGKKT-----RKKDLGMMAMSYGYVYVAQIAMGANMNQTIKAITEAESYDGPSLIIA 1070
Query: 222 HCTCPT-GWRTPLEKGIEIARLAIETGMW------PLFEIENGDIWHIKIQPPGGGAKVY 274
+ C + G R+ + I + A+ TG W PL + E + + ++ + P G K +
Sbjct: 1071 YAPCISHGIRSGMGTSIMEQKKAVNTGYWHLYRFSPLLKEEGKNPFVLESKEPTGEFKNF 1130
Query: 275 KEG 277
G
Sbjct: 1131 ING 1133
>gb|AAD55754.1|AF132546_1 (AF132546) pyruvate:ferredoxin oxidoreductase [Spironucleus
barkhanus]
Length = 1182
Score = 74.5 bits (180), Expect = 2e-12
Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 26/216 (12%)
Query: 104 KGKILAIGGDGGTADIGLQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTTT 163
K I+ IGGDG DIG L +L G + L+ D E Y NTG Q S STP GA
Sbjct: 974 KPAIVIIGGDGWAYDIGYGGLDHILASGQDFTILVVDTEVYSNTGGQCSKSTPLGAVARF 1033
Query: 164 SPPGKYSIGEDRPKKWVALIAAAHMIPYVATASIGNPFDF-VKKVKKAAKVDGPAFVQVH 222
+ GK + KK + +IA + YVA+ ++ F+ VK +++A + GP+ + +
Sbjct: 1034 AAGGKRNF-----KKDLGMIAQQYPEVYVASINLNANFNHAVKSMREAVEWKGPSILIAY 1088
Query: 223 CTCPTGWRTPLEKGIEIARLAIETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVVR 282
C ++ E + +LA TG W ++ + P G K+
Sbjct: 1089 SPCIEHGQSMTESA-QQEKLAAATGYWLSYD-----------RHPERGLKMSTP------ 1130
Query: 283 IEFKKPIEEYLKYQGRFKHL-FKRPEAIDELRNQIK 317
+ K + E+L Q RFK L PE +L +++
Sbjct: 1131 -KPAKAVAEFLAKQNRFKQLASSEPEVAQQLAKELQ 1165
>pir||G75168 2-ketoglutarate ferredoxin oxidoreductase, chain beta (korb-2)
PAB0347 - Pyrococcus abyssi (strain Orsay)
>gi|5457940|emb|CAB49430.1| (AJ248284) 2-ketoglutarate
ferredoxin oxidoreductase, subunit beta (korB-2)
[Pyrococcus abyssi]
Length = 281
Score = 73.7 bits (178), Expect = 3e-12
Identities = 80/305 (26%), Positives = 122/305 (39%), Gaps = 50/305 (16%)
Query: 24 CAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTAWKVPWVHVA 83
C GCG + L+ +A +++ DP+ GC V + +H
Sbjct: 24 CPGCGIGSVLQYTLRA----IDDLGLDPDKIVWVSGIGCSSRVPGFVNFDG-----LHTT 74
Query: 84 FENAAAAASGIEAAWKKKGIKGKILAIGGDGGTADIGLQALSGMLERGHNVVYLMYDNEA 143
A A A+GI+ A + KI+A GDG A IG L + R +V ++ +N
Sbjct: 75 HGRALAFATGIKLANPEL----KIIAFMGDGDAAAIGGNHLIHAIRRNLDVTVILINNFT 130
Query: 144 YMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHMIPYVATASIGNPFDF 203
Y TG Q + +TP G TT+P G++ D +A +A A YVA ++ N
Sbjct: 131 YGMTGGQVAPTTPKGLRGTTAPYGQFENPFD-----IAQLAVAAGANYVARWTVFNYIQG 185
Query: 204 VKKVKKAAKVDGPAFVQVHCTCPT--GWRTPLEKGIEIARLAIETGMWPLFEIENGDIWH 261
+ +KKA +G V+ CP G R ++ E+ R W+
Sbjct: 186 INSIKKALSKEGFTLVEFLSPCPISFGRRNRMKTAPELIR------------------WY 227
Query: 262 IKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLFKRPEAIDELRNQIKAMWK 321
KI P AK K +E K I E++ RP + E + IK K
Sbjct: 228 QKITVPINKAKKMKP----EELEGKIVIGEFVDRD--------RPGLVREYKEYIKRAKK 275
Query: 322 VLGVE 326
++G E
Sbjct: 276 MMGWE 280
>gb|AAC16733.1| (AF064035) pyruvate-ferredoxin oxidoreductase 1 [Clostridium
pasteurianum]
Length = 387
Score = 72.6 bits (175), Expect = 6e-12
Identities = 55/173 (31%), Positives = 86/173 (48%), Gaps = 10/173 (5%)
Query: 85 ENAAAAASGI--EAAWKKKGI-KGKILAIGGDGGTADIGLQALSGMLERGHNVVYLMYDN 141
E AAAA + E KK+ + K + +GGDG DIG L +L G NV +++D
Sbjct: 148 EKAAAAGCELSKEVLEKKQYLPKKSVWVLGGDGWAYDIGFGGLDHVLATGENVNVMVFDT 207
Query: 142 EAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHMIPYVATASIG-NP 200
E Y NTG Q S ++ G + GK D KK +A IA ++ YVA ++G NP
Sbjct: 208 EMYSNTGGQASKASNIGEVCQFAAAGK-----DIGKKSLAEIAMSYGYVYVAQIALGANP 262
Query: 201 FDFVKKVKKAAKVDGPAFVQVHCTCPT-GWRTPLEKGIEIARLAIETGMWPLF 252
+K + +A +GP+ + + C G + + + + A+++G W LF
Sbjct: 263 AQTLKAISEAEAYNGPSLIIGYAPCELHGVKGGMNHCQDEMKSAVKSGYWNLF 315
>emb|CAB43934.1| (Y17727) pyruvate ferredoxin oxidoreductase [Clostridium
pasteurianum]
Length = 1181
Score = 72.6 bits (175), Expect = 6e-12
Identities = 55/173 (31%), Positives = 86/173 (48%), Gaps = 10/173 (5%)
Query: 85 ENAAAAASGI--EAAWKKKGI-KGKILAIGGDGGTADIGLQALSGMLERGHNVVYLMYDN 141
E AAAA + E KK+ + K + +GGDG DIG L +L G NV +++D
Sbjct: 942 EKAAAAGCELSKEVLEKKQYLPKKSVWVLGGDGWAYDIGFGGLDHVLATGENVNVMVFDT 1001
Query: 142 EAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHMIPYVATASIG-NP 200
E Y NTG Q S ++ G + GK D KK +A IA ++ YVA ++G NP
Sbjct: 1002 EMYSNTGGQASKASNIGEVCQFAAAGK-----DIGKKSLAEIAMSYGYVYVAQIALGANP 1056
Query: 201 FDFVKKVKKAAKVDGPAFVQVHCTCPT-GWRTPLEKGIEIARLAIETGMWPLF 252
+K + +A +GP+ + + C G + + + + A+++G W LF
Sbjct: 1057 AQTLKAISEAEAYNGPSLIIGYAPCELHGVKGGMNHCQDEMKSAVKSGYWNLF 1109
>sp|Q57957|KORB_METJA 2-OXOGLUTARATE SYNTHASE SUBUNIT KORB (2-KETOGLUTARATE
OXIDOREDUCTASE BETA CHAIN) (KOR)
(2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|2129229|pir||A64367 pyruvate synthase (EC 1.2.7.1)
beta chain - Methanococcus jannaschii
>gi|1591241|gb|AAB98531.1| (U67503) 2-ketoglutarate
ferredoxin oxidoreductase, subunit beta (korB)
[Methanococcus jannaschii]
Length = 270
Score = 72.2 bits (174), Expect = 8e-12
Identities = 60/207 (28%), Positives = 86/207 (40%), Gaps = 18/207 (8%)
Query: 21 HAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTAWKVPWV 80
H C+GCG + F +A+EE P + GC V + +
Sbjct: 15 HIFCSGCGNGIVMN----CFLKAIEELNIKPEDYIAVSGIGCSSRVPGYLYCDS-----L 65
Query: 81 HVAFENAAAAASGIEAAWKKKGIKGKILAIGGDGGTADIGLQALSGMLERGHNVVYLMYD 140
H A A+GI+ A K ++ GDG A IG R ++ + +
Sbjct: 66 HTTHGRPIAFATGIKIARPDK----HVVVFTGDGDLAAIGGNHFIHGCRRNIDLTVICIN 121
Query: 141 NEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHMIPYVATASIGNP 200
N Y TG Q S +TPYG TT+P G D K +A+ A A YVA + +P
Sbjct: 122 NNIYGMTGGQVSPTTPYGKKATTAPYGSIENTMDLCK--MAIAAGA---TYVARWTTAHP 176
Query: 201 FDFVKKVKKAAKVDGPAFVQVHCTCPT 227
V+ +KK + G AF++V CPT
Sbjct: 177 IQLVRSIKKGIQKKGFAFIEVVSQCPT 203
>sp|Q06879|NIFJ_ANASP PYRUVATE-FLAVODOXIN OXIDOREDUCTASE >gi|2126544|pir||I39613 pyruvate
(flavodoxin) dehydrogenase nifJ (EC 1.2.99.-) - Anabaena
sp >gi|289139|gb|AAC36818.1| (L14925) nitrogen fixation
protein [Anabaena sp.]
Length = 1197
Score = 71.0 bits (171), Expect = 2e-11
Identities = 59/227 (25%), Positives = 101/227 (43%), Gaps = 28/227 (12%)
Query: 103 IKGKILAIGGDGGTADIGLQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTT 162
+K + IGGDG DI + ++ G NV L+ D E Y NTG Q S +TP A
Sbjct: 985 VKKSVWIIGGDGWAYDIDFGGIDHVIASGRNVNILVMDIEVYSNTGGQSSKATPKAAVAK 1044
Query: 163 TSPPGKYSIGEDRPKKWVALIAAAHMIPYVATASIGNPFD-FVKKVKKAAKVDGPAFVQV 221
+ GK KK + L+A + YVA+ ++G D +K +A DGP+ +
Sbjct: 1045 FAASGK-----PAQKKDMGLMAMNYGNVYVASVALGAKDDQTLKAFLEAEAFDGPSIIIA 1099
Query: 222 HCTCPTGWRTPLEKGIEIARLAIETGMWPLFEIENGDIWHIKIQPPGGGAKVYKEGGRVV 281
+ C + G+ + +E+G W L+ + ++G +
Sbjct: 1100 YSHC-IAHGINMTTGMNQQKALVESGRWLLYRY---------------NPLLQEQGKNPL 1143
Query: 282 RIEFKKP---IEEYLKYQGRFKHLFK-RPEAIDELRNQ--IKAMWKV 322
+++ + P +E+ + + RFK L K +PE +L Q + A W++
Sbjct: 1144 QLDMRSPTQSVEQSMYQENRFKMLTKSKPEVAKQLLEQAEVDARWQM 1190
>sp|P52647|NIFJ_ECOLI PROBABLE PYRUVATE-FLAVODOXIN OXIDOREDUCTASE >gi|7431614|pir||E64888
probable pyruvate (flavodoxin) dehydrogenase (EC
1.2.99.-) ydbK - Escherichia coli
>gi|1742250|dbj|BAA14982.1| (D90775) Pyruvate-flavodoxin
oxidoreductase (EC 1.-.-.-). [Escherichia coli]
>gi|1742256|dbj|BAA14987.1| (D90776) Pyruvate-flavodoxin
oxidoreductase (EC 1.-.-.-). [Escherichia coli]
>gi|1787642|gb|AAC74460.1| (AE000234) putative
oxidoreductase, Fe-S subunit [Escherichia coli K12]
Length = 1174
Score = 71.0 bits (171), Expect = 2e-11
Identities = 63/221 (28%), Positives = 98/221 (43%), Gaps = 38/221 (17%)
Query: 103 IKGKILAIGGDGGTADIGLQALSGMLERGHNVVYLMYDNEAYMNTGIQRSSSTPYGAWTT 162
++ I IGGDG DIG L +L NV L+ D + Y NTG Q S +TP GA T
Sbjct: 953 VEKSIWLIGGDGWAYDIGFGGLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTK 1012
Query: 163 TSPPGKYSIGEDRPKKWVALIAAAHMIPYVATASIGNPFD-FVKKVKKAAKVDGPAFVQV 221
GK +D V+++ H+ YVA S+G + VK +++A GP+ +
Sbjct: 1013 FGEHGKRKARKD---LGVSMMMYGHV--YVAQISLGAQLNQTVKAIQEAEAYPGPSLIIA 1067
Query: 222 HCTCPTGWRTPLEKGIEIA------RLAIETGMWPLFEIENGDIWHIKIQPPGGGAKVYK 275
+ C E G ++A R TG WPL+ + +
Sbjct: 1068 YSPCE-------EHGYDLALSHDQMRQLTATGFWPLYRFD---------------PRRAD 1105
Query: 276 EGGRVVRIEFKKPI---EEYLKYQGRFKHL-FKRPEAIDEL 312
EG + ++ + P EE L ++ RF+ L ++PE ++L
Sbjct: 1106 EGKLPLALDSRPPSEAPEETLLHEQRFRRLNSQQPEVAEQL 1146
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.136 0.427
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139543191
Number of Sequences: 2977
Number of extensions: 6114787
Number of successful extensions: 14219
Number of sequences better than 1.0e-10: 46
Number of HSP's better than 0.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 14088
Number of HSP's gapped (non-prelim): 61
length of query: 334
length of database: 189,106,746
effective HSP length: 52
effective length of query: 282
effective length of database: 157,985,422
effective search space: 44551889004
effective search space used: 44551889004
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)