BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1477 (PAB1477) DE:Hypothetical protein
(263 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75046 hypothetical protein PAB1477 - Pyrococcus abyssi (st... 515 e-145
pir||G71114 probable ORFZ protein - Pyrococcus horikoshii >gi|32... 480 e-135
pir||T45090 hypothetical protein Z [imported] - Pyrococcus furio... 203 1e-51
emb|CAC12260.1| (AL445066) conserved hypothetical protein [Therm... 87 3e-16
>pir||E75046 hypothetical protein PAB1477 - Pyrococcus abyssi (strain Orsay)
>gi|5458779|emb|CAB50266.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 263
Score = 515 bits (1312), Expect = e-145
Identities = 263/263 (100%), Positives = 263/263 (100%)
Query: 1 MMRVAIVTSDPRVYYIAARVLKEHKIPFYSLRINDEIPFDVEVVLTSEKDFEKVKFPNKV 60
MMRVAIVTSDPRVYYIAARVLKEHKIPFYSLRINDEIPFDVEVVLTSEKDFEKVKFPNKV
Sbjct: 1 MMRVAIVTSDPRVYYIAARVLKEHKIPFYSLRINDEIPFDVEVVLTSEKDFEKVKFPNKV 60
Query: 61 IVRDENFIDELLLKLEGRERFKTVFISIDPGERPGVSVVADNRVLEVYHLKNPKDVSVII 120
IVRDENFIDELLLKLEGRERFKTVFISIDPGERPGVSVVADNRVLEVYHLKNPKDVSVII
Sbjct: 61 IVRDENFIDELLLKLEGRERFKTVFISIDPGERPGVSVVADNRVLEVYHLKNPKDVSVII 120
Query: 121 QLLEKYPGAKIKIGHGAKRHRILMLKSLAKVLGEDYPIIIVNERGTTPRVGGVEAWAVQD 180
QLLEKYPGAKIKIGHGAKRHRILMLKSLAKVLGEDYPIIIVNERGTTPRVGGVEAWAVQD
Sbjct: 121 QLLEKYPGAKIKIGHGAKRHRILMLKSLAKVLGEDYPIIIVNERGTTPRVGGVEAWAVQD 180
Query: 181 IVASINIALREGRETTIRELIKGDKVTKGEIENIKAKSRIISGGRITISSELAREVALGN 240
IVASINIALREGRETTIRELIKGDKVTKGEIENIKAKSRIISGGRITISSELAREVALGN
Sbjct: 181 IVASINIALREGRETTIRELIKGDKVTKGEIENIKAKSRIISGGRITISSELAREVALGN 240
Query: 241 LSIEEAIEIQKRKERWKDDTRKE 263
LSIEEAIEIQKRKERWKDDTRKE
Sbjct: 241 LSIEEAIEIQKRKERWKDDTRKE 263
>pir||G71114 probable ORFZ protein - Pyrococcus horikoshii
>gi|3257094|dbj|BAA29777.1| (AP000003) 263aa long
hypothetical ORFZ protein [Pyrococcus horikoshii]
Length = 263
Score = 480 bits (1223), Expect = e-135
Identities = 235/263 (89%), Positives = 257/263 (97%)
Query: 1 MMRVAIVTSDPRVYYIAARVLKEHKIPFYSLRINDEIPFDVEVVLTSEKDFEKVKFPNKV 60
MMRVAIVTSDPRVYYIAA+VLKE+KIPFYSLR+ DEIPFDVEVVLTSEKDF+KV FPNK+
Sbjct: 1 MMRVAIVTSDPRVYYIAAKVLKENKIPFYSLRLGDEIPFDVEVVLTSEKDFDKVSFPNKI 60
Query: 61 IVRDENFIDELLLKLEGRERFKTVFISIDPGERPGVSVVADNRVLEVYHLKNPKDVSVII 120
IVRDE FIDELLLKLEGR +FK VFI+IDPGERPGVSVVADNRVLEVYHLK+P+D++VI+
Sbjct: 61 IVRDETFIDELLLKLEGRSKFKNVFIAIDPGERPGVSVVADNRVLEVYHLKSPRDINVIL 120
Query: 121 QLLEKYPGAKIKIGHGAKRHRILMLKSLAKVLGEDYPIIIVNERGTTPRVGGVEAWAVQD 180
QLLEKYPGAKIKIGHGAKRHR+LMLKSLAK+LGEDYPIIIVNERGTTPRVGGVEAWA+QD
Sbjct: 121 QLLEKYPGAKIKIGHGAKRHRVLMLKSLAKILGEDYPIIIVNERGTTPRVGGVEAWAIQD 180
Query: 181 IVASINIALREGRETTIRELIKGDKVTKGEIENIKAKSRIISGGRITISSELAREVALGN 240
IVASINI LREGRETTIREL++GDKVTKGEIENIKA+SRI+SGG+ITISSELAREVALGN
Sbjct: 181 IVASINIGLREGRETTIRELVRGDKVTKGEIENIKARSRILSGGKITISSELAREVALGN 240
Query: 241 LSIEEAIEIQKRKERWKDDTRKE 263
L+IEEAIEIQKRKERWKDDTR+E
Sbjct: 241 LTIEEAIEIQKRKERWKDDTREE 263
>pir||T45090 hypothetical protein Z [imported] - Pyrococcus furiosus (fragment)
>gi|1197365|emb|CAA59507.1| (X85250) ORFZ [Pyrococcus
furiosus]
Length = 117
Score = 203 bits (512), Expect = 1e-51
Identities = 95/117 (81%), Positives = 110/117 (93%)
Query: 2 MRVAIVTSDPRVYYIAARVLKEHKIPFYSLRINDEIPFDVEVVLTSEKDFEKVKFPNKVI 61
MR+AI+TSDPRVYY+A++VLKEHKIPFYSL DEIPFDVEV+LT EKDF+K+KFPNK+I
Sbjct: 1 MRIAIMTSDPRVYYLASKVLKEHKIPFYSLTPTDEIPFDVEVILTGEKDFDKIKFPNKII 60
Query: 62 VRDENFIDELLLKLEGRERFKTVFISIDPGERPGVSVVADNRVLEVYHLKNPKDVSV 118
VRDE FIDELLL LEG++RFK+VFI+IDPGERPGVSVVADNRVLEVYHLK+PKDV +
Sbjct: 61 VRDETFIDELLLFLEGKKRFKSVFIAIDPGERPGVSVVADNRVLEVYHLKSPKDVDI 117
>emb|CAC12260.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 228
Score = 86.6 bits (211), Expect = 3e-16
Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 9/171 (5%)
Query: 1 MMRVAIVTSDPRVYYIAARVLKEHKIPFYSLRINDEIPFDVEVVLTSEKDFEKVKFPNKV 60
M RV I+TSD + Y+ + L+ KIPF SL + IP DV V+L+S +D + P++V
Sbjct: 1 MPRVGIITSDFKFYHDVIKQLRLWKIPFVSLDLKGNIPDDVVVILSSIRD--DIDLPDQV 58
Query: 61 IVRDE-NFIDELLLKLEGRERFKTVFISIDPGERPGVSVVADNRVLEVYHLKNPKDVSVI 119
+D + I + +L + FK + I IDPG +PG++V D+ +LE + V
Sbjct: 59 KAQDGLDGIRRAIPRLLNKTMFKDLTIGIDPGPKPGIAVFGDDVLLEAFECPTVFSVRKF 118
Query: 120 IQLLE---KYPGAKIKIGHGAKRHRILMLKSLAKVLGEDYPIIIVNERGTT 167
+ + Y IKIG+G + +R +++ L+ V D I +VNE+ T+
Sbjct: 119 VDSISMSYSYENITIKIGNGDRPNRDIIMNRLSDV---DISIEVVNEKNTS 166
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.382
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91138668
Number of Sequences: 2977
Number of extensions: 3651715
Number of successful extensions: 9420
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9415
Number of HSP's gapped (non-prelim): 4
length of query: 263
length of database: 189,106,746
effective HSP length: 58
effective length of query: 205
effective length of database: 154,394,500
effective search space: 31650872500
effective search space used: 31650872500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)