BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1478 (PAB1478) DE:TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
(840 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75046 transitional endoplasmic reticulum atpase PAB1478 - ... 1647 0.0
pir||H71114 probable cell division control protein (transitional... 1552 0.0
dbj|BAA87866.1| (AB018433) Pk-cdcA [Pyrococcus kodakaraensis] 1379 0.0
pir||F75154 cell division control protein 48, aaa family (cdc48-... 1144 0.0
pir||B71196 probable transitional endoplasmic reticulum ATPase -... 1134 0.0
gi|11499681 cell division control protein 48, AAA family (cdc48-... 861 0.0
gi|11498895 cell division control protein 48, AAA family (cdc48-... 850 0.0
pir||A69086 cell division control protein Cdc48 - Methanobacteri... 836 0.0
sp|Q58556|YB56_METJA CELL DIVISION CYCLE PROTEIN 48 HOMOLOG MJ11... 821 0.0
pir||D72613 probable transitional endoplasmic reticulum ATPase A... 809 0.0
sp|Q07590|SAV_SULAC SAV PROTEIN >gi|1076162|pir||S43859 ATPase -... 797 0.0
gb|AAK40746.1| AAA family ATPase [Sulfolobus solfataricus] 792 0.0
pir||B72479 probable transitional endoplasmic reticulum ATPase A... 783 0.0
gb|AAK40524.1| AAA family ATPase [Sulfolobus solfataricus] 778 0.0
sp|O05209|VAT_THEAC VCP-LIKE ATPASE >gi|7484232|pir||T37458 VCP-... 762 0.0
gb|AAG19919.1| (AE005075) cell division cycle protein; Cdc48c [H... 702 0.0
sp|P46464|CDCH_HALSA CDCH PROTEIN >gi|629399|pir||S47018 cdcH pr... 700 0.0
gb|AAG19776.1| (AE005063) cell division cycle protein; Cdc48b [H... 645 0.0
gb|AAG20864.1| (AE005154) cell division cycle protein; Cdc48d [H... 620 e-176
gb|AAB40928.2| (U83085) cell division cycle protein 48 [Dictyost... 615 e-175
pir||T46169 CDC48-like protein - Arabidopsis thaliana >gi|663074... 610 e-173
gb|AAC02215.1| (AF044488) valosin-containing protein homolog [Tr... 610 e-173
sp|P46462|TERA_RAT TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TE... 602 e-171
gi|6005942 valosin-containing protein [Homo sapiens] >gi|1142956... 602 e-171
pir||VPPG transitional endoplasmic reticulum ATPase - pig >gi|22... 601 e-171
gi|6678559 valosin containing protein; homolog of yeast cdc48 (S... 601 e-171
pir||T48355 transitional endoplasmic reticulum ATPase - Arabidop... 601 e-170
sp|P03974|TERA_PIG TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TE... 600 e-170
sp|P54609|CC48_ARATH CELL DIVISION CYCLE PROTEIN 48 HOMOLOG >gi|... 600 e-170
sp|P54774|CC48_SOYBN CELL DIVISION CYCLE PROTEIN 48 HOMOLOG (VAL... 599 e-170
sp|Q96372|CC48_CAPAN CELL DIVISION CYCLE PROTEIN 48 HOMOLOG >gi|... 593 e-168
sp|P23787|TERA_XENLA TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (... 591 e-168
gb|AAF74998.1| (AF199367) cdc48-like protein [Entamoeba histolyt... 571 e-161
sp|P54812|TER2_CAEEL TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE H... 568 e-160
gi|10946660 spermatogenesis associated factor [Mus musculus] >gi... 557 e-157
gb|AAD27852.1|AF132553_1 (AF132553) BcDNA.GM02885 [Drosophila me... 556 e-157
gi|6320077 microsomal ATPase; Cdc48p [Saccharomyces cerevisiae] ... 552 e-156
gb|AAC27447.1| (AF047037) transitional endoplasmic reticulum ATP... 552 e-156
sp|P54811|TER1_CAEEL TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE H... 550 e-155
gb|AAF17568.1|AF202034_1 (AF202034) endoplasmic reticulum membra... 540 e-152
pir||T40537 AAA family ATPase - fission yeast (Schizosaccharomyc... 517 e-145
gi|6323429 homology to the CDC48 gene product; Afg2p [Saccharomy... 505 e-142
pir||T39584 hypothetical protein SPBC16E9.10c - fission yeast (... 504 e-141
pir||T51257 calmodulin-binding protein - Arabidopsis thaliana >g... 471 e-131
pir||T50928 calmodulin-binding protein [imported] - Arabidopsis ... 458 e-127
gi|6322994 Yll034cp [Saccharomyces cerevisiae] >gi|2492526|sp|Q0... 450 e-125
gb|AAB70457.1| (U68140) nuclear VCP-like protein NVLp.2 [Homo sa... 448 e-124
gi|4505483 nuclear VCP-like; Nuclear valosin-containing protein-... 448 e-124
gb|AAF01545.1|AC009325_15 (AC009325) putative cell division cont... 439 e-122
gb|AAF53216.1| (AE003637) CG5776 gene product [Drosophila melano... 400 e-110
gb|AAK42565.1| AAA family ATPase [Sulfolobus solfataricus] 400 e-110
gb|AAD20084.1| (AC006836) putative AAA-type ATPase [Arabidopsis ... 395 e-108
dbj|BAA85441.1| (AP000616) EST D15969(C1695) corresponds to a re... 387 e-106
emb|CAB60418.1| (AL117203) contains similarity to Pfam domain: P... 382 e-105
pir||T31590 hypothetical protein Y48C3A.h - Caenorhabditis elegans 382 e-105
gb|AAF05624.1| (AF059715) cell survival CED-4-interacting protei... 376 e-103
pir||A70632 hypothetical protein Rv0435c - Mycobacterium tubercu... 360 3e-98
pir||T46437 hypothetical protein DKFZp434K0126.1 - human (fragme... 360 5e-98
pir||T11652 probable transitional endoplasmic reticulum ATPase -... 341 2e-92
gb|AAG19767.1| (AE005062) cell division cycle protein; Cdc48a [H... 321 2e-86
gb|AAG29874.1| (AF313486) valosin-containing protein [Homo sapiens] 313 6e-84
emb|CAB99275.1| (AL390274) yeast cdc48 homologue; transitional e... 305 1e-81
gb|AAK42941.1| AAA family ATPase [Sulfolobus solfataricus] 300 3e-80
pir||T23322 hypothetical protein K04G2.3 - Caenorhabditis elegan... 300 6e-80
sp|Q58576|PRS1_METJA PROTEASOME-ACTIVATING NUCLEOTIDASE (PAN) (2... 289 1e-76
emb|CAA67594.1| (X99207) smallminded [Drosophila melanogaster] 289 1e-76
gb|AAF50566.1| (AE003559) smid gene product [Drosophila melanoga... 289 1e-76
gi|4505725 peroxisome biogenesis factor 1 [Homo sapiens] >gi|813... 282 1e-74
gi|11419443 peroxisome biogenesis factor 1 [Homo sapiens] 282 1e-74
gb|AAG29873.1| (AF313486) valosin-containing protein [Homo sapiens] 278 2e-73
sp|P36966|PEX6_YARLI PEROXISOME BIOSYNTHESIS PROTEIN PAY4 (PEROX... 273 4e-72
gb|AAD25809.1|AC006550_17 (AC006550) Belongs to PF|00004 ATPases... 272 1e-71
gi|11499558 26S protease regulatory subunit 4 [Archaeoglobus ful... 272 2e-71
sp|P33289|PEX6_PICPA PEROXISOME BIOSYNTHESIS PROTEIN PAS5 (PEROX... 269 8e-71
sp|P46468|CDAT_PLAFA PUTATIVE CELL DIVISION CYCLE ATPASE >gi|552... 269 8e-71
sp|O26824|PRS1_METTH PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HO... 267 4e-70
pir||A48667 peroxisomal assembly protein 5 - yeast (Pichia pasto... 266 5e-70
sp|O13764|PEX6_SCHPO PROBABLE PEROXIN-6 >gi|7492793|pir||T37816 ... 265 2e-69
gb|AAF58736.1| (AE003828) CG11919 gene product [Drosophila melan... 264 3e-69
pir||G71242 probable 26S proteinase regulatory subunit - Pyrococ... 263 8e-69
pir||H75207 26s proteinase regulatory chain 4 PAB2233 - Pyrococc... 263 8e-69
gb|AAF20144.1|AF208231_1 (AF208231) peroxisome assembly protein ... 262 1e-68
dbj|BAB09996.1| (AB006697) contains similarity to ATPase; peroxi... 256 1e-66
gb|AAK40609.1| AAA family ATPase [Sulfolobus solfataricus] 256 1e-66
sp|O67077|FTSH_AQUAE CELL DIVISION PROTEIN FTSH HOMOLOG >gi|7446... 254 3e-66
pir||F72504 probable 26S proteinase regulatory subunit APE2012 -... 254 3e-66
gb|AAD52811.1|AF129873_1 (AF129873) peroxin-1 [Pichia angusta] 253 5e-66
gb|AAB46346.1| (AC000064) ATPase; strong similarity to peroxisom... 250 3e-65
sp|P54777|PEX6_RAT PEROXISOME ASSEMBLY FACTOR-2 (PAF-2) (PEROXIS... 249 1e-64
dbj|BAA24931.1| (D89660) peroxisome assembly factor-2 [Rattus no... 249 1e-64
gb|AAG19042.1| (AE005003) ATP-dependent 26S proteinase regulator... 248 2e-64
gi|6324000 Member of the AAA-protein family that includes NSFp a... 247 3e-64
emb|CAA58229.1| (X83226) peroxisome biogenesis invlved proteind ... 247 3e-64
gb|AAD52812.1|AF129874_1 (AF129874) peroxin-6 [Pichia angusta] 247 5e-64
dbj|BAA96090.1| (AB032368) FtsH [Thermus thermophilus] 247 5e-64
sp|Q13608|PEX6_HUMAN PEROXISOME ASSEMBLY FACTOR-2 (PAF-2) (PEROX... 244 3e-63
gi|4505729 peroxisomal biogenesis factor 6; Peroxisomal biogenes... 244 3e-63
gi|11417640 peroxisomal biogenesis factor 6 [Homo sapiens] 244 3e-63
gb|AAF49760.1| (AE003536) l(3)70Da gene product [Drosophila mela... 243 7e-63
emb|CAB51031.1| (AJ243811) l(3)70Da [Drosophila melanogaster] 243 7e-63
sp|Q90732|PRS4_CHICK 26S PROTEASE REGULATORY SUBUNIT 4 (P26S4) >... 242 1e-62
emb|CAB55389.1| (AL117264) zwh0005.1 [Oryza sativa] 242 2e-62
sp|P46507|PRS6_MANSE 26S PROTEASE REGULATORY SUBUNIT 6B (ATPASE ... 241 3e-62
pir||T33633 hypothetical protein F56F11.4 - Caenorhabditis elega... 240 4e-62
gb|AAG09749.1|AF233277_1 (AF233277) peroxin-6 [Penicillium chrys... 240 5e-62
gb|AAF22523.1|AF123392_1 (AF123392) 26S proteasome AAA-ATPase su... 240 5e-62
gb|AAF47769.1| (AE003478) CG12010 gene product [Drosophila melan... 240 5e-62
gb|AAF08387.1|AF145306_1 (AF145306) 26S proteasome regulatory co... 239 1e-61
pir||A44468 26S proteasome regulatory chain 4 [validated] - human 238 2e-61
gi|4506207 proteasome (prosome, macropain) 26S subunit, ATPase, ... 238 2e-61
sp|P48601|PRS4_DROME 26S PROTEASE REGULATORY SUBUNIT 4 (P26S4) >... 238 2e-61
gi|6679501 protease (prosome, macropain) 26S subunit, ATPase 1 [... 238 2e-61
sp|P71408|FTSH_HELPY CELL DIVISION PROTEIN FTSH HOMOLOG >gi|7446... 238 2e-61
sp|P41836|PRS8_SCHPO 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG (... 237 3e-61
sp|Q9ZM66|FTSH_HELPJ CELL DIVISION PROTEIN FTSH HOMOLOG >gi|7446... 237 3e-61
gb|AAF56205.1| (AE003745) Pros26.4 gene product [Drosophila mela... 237 3e-61
gb|AAF58864.1| (AE003831) TER94 gene product [alt 1] [Drosophila... 237 3e-61
sp|P46466|PRS4_ORYSA 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG (... 237 4e-61
sp|P34123|PRS6_DICDI 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG ... 236 6e-61
sp|P54778|PRS6_SOLTU 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG ... 236 6e-61
pir||T27048 hypothetical protein Y49E10.1 - Caenorhabditis elega... 236 6e-61
gb|AAB66377.1| (U97567) FtsH [Helicobacter pylori] 236 7e-61
gb|AAG09748.1|AF233276_1 (AF233276) peroxin-1 [Penicillium chrys... 236 1e-60
gi|5901990 katanin p60 subunit A 1 [Homo sapiens] >gi|3283072|gb... 235 1e-60
emb|CAB88114.1| (AL078581) dJ12G14.4 (katanin p60 (ATPase-contai... 235 1e-60
pir||T49402 probable 26S proteinase subunit (SUG1) protein [impo... 235 1e-60
gb|AAF91245.1|AF227501_1 (AF227501) proteasome regulatory ATPase... 235 1e-60
gi|11418569 katanin p60 (ATPase-containing) subunit A 1 [Homo sa... 235 1e-60
sp|P46465|PRSA_ORYSA 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG ... 235 2e-60
sp|P54776|PRSA_LYCES 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG ... 233 5e-60
sp|O32617|FTSH_HELFE CELL DIVISION PROTEIN FTSH HOMOLOG >gi|1127... 233 6e-60
gb|AAF91244.1|AF227500_1 (AF227500) proteasome regulatory ATPase... 233 6e-60
gi|6679503 proteasome (prosome, macropain) 26S subunit, ATPase 3... 233 6e-60
gi|11437005 proteasome (prosome, macropain) 26S subunit, ATPase,... 233 6e-60
sp|Q25544|PRS8_NAEFO 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG (... 233 6e-60
gb|AAB70882.1| (U77918) spermatogenic cell/sperm-associated Tat-... 233 6e-60
sp|Q63569|PRSA_RAT 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDI... 233 8e-60
sp|P46502|PRS6_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT 6B... 233 8e-60
gb|AAD24384.1|AC006081_20 (AC006081) 26S proteasome subunit 4 [A... 233 8e-60
sp|O04019|PRSA_ARATH 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG ... 232 1e-59
emb|CAA47023.1| (X66400) sug1 [Saccharomyces cerevisiae] >gi|119... 232 1e-59
gi|6321390 ATPase; Rpt6p [Saccharomyces cerevisiae] >gi|1709801|... 232 1e-59
prf||1813279A SUG1 gene [Saccharomyces cerevisiae] 232 1e-59
gb|AAC44563.1| (U59452) HpFtsH [Helicobacter pylori] 232 1e-59
pir||T08959 proteinase homolog F19B15.70 - Arabidopsis thaliana ... 232 1e-59
gb|AAF22522.1|AF123391_1 (AF123391) 26S proteasome AAA-ATPase su... 232 1e-59
emb|CAC14432.1| (AJ291500) 26S proteasome subunit 4-like protein... 232 1e-59
gb|AAG20171.1| (AE005094) ATP-dependent 26S proteinase regulator... 231 2e-59
pir||T44596 26S proteasome regulatory complex chain p50 [importe... 231 2e-59
sp|P17980|PRSA_HUMAN 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BIN... 231 3e-59
sp|O23894|PRSA_BRACM 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG ... 230 4e-59
gb|AAF22525.1|AF123394_1 (AF123394) 26S proteasome AAA-ATPase su... 230 4e-59
gi|4506211 proteasome (prosome, macropain) 26S subunit, ATPase, ... 229 7e-59
dbj|BAB17625.1| (AB033536) 26S proteasome regulatory particle tr... 229 9e-59
sp|P47210|PRS8_HUMAN 26S PROTEASE REGULATORY SUBUNIT 8 (PROTEASO... 229 1e-58
gb|AAD46145.1| (AF081573) 19S proteasome regulatory complex subu... 229 1e-58
gb|AAB24840.1| Tat binding protein 1, TBP-1=transcriptional acti... 228 2e-58
gi|7110703 protease (prosome, macropain) 26S subunit, ATPase 5 [... 228 2e-58
emb|CAA61864.1| (X89719) put. 26S protease subunit [Sus scrofa] 228 2e-58
pir||T43799 proteasome protein p45/SUG [imported] - rat (fragmen... 228 2e-58
gb|AAD53310.1|AF177942_1 (AF177942) katanin p60 [Xenopus laevis] 228 2e-58
gi|6754410 katanin p60 (ATPase-containing) subunit A1 [Mus muscu... 228 2e-58
sp|O42586|PRSB_XENLA 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BIN... 228 3e-58
sp|O16368|PRS4_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT 4 ... 227 4e-58
pir||T48743 probable 26S ATP/ubiquitin-dependent proteinase chai... 227 5e-58
pir||T41420 26S proteinase regulatory subunit 6b homolog - fissi... 226 6e-58
sp|Q41365|PRS7_SPIOL 26S PROTEASE REGULATORY SUBUNIT 7 (26S PROT... 226 8e-58
sp|P73179|FTH2_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 2 >gi|74... 226 8e-58
gi|11467752 hypothetical chloroplast RF25 [Guillardia theta] >gi... 226 8e-58
gb|AAF91243.1|AF227499_1 (AF227499) proteasome regulatory ATPase... 226 8e-58
dbj|BAB17624.1| (AB033535) 26S proteasome regulatory particle tr... 226 8e-58
gi|4506213 proteasome (prosome, macropain) 26S subunit, ATPase, ... 226 1e-57
sp|P46470|PRS8_XENLA 26S PROTEASE REGULATORY SUBUNIT 8 (SUG1 HOM... 226 1e-57
gb|AAF91246.1|AF227502_1 (AF227502) proteasome regulatory ATPase... 225 1e-57
gb|AAB42248.1| (U88170) Contains similarity to Pfam domain: PF00... 225 2e-57
pir||D70198 cell division protein (ftsH) homolog - Lyme disease ... 225 2e-57
gb|AAG38539.1|AF309805_4 (AF309805) putative 26S protease regula... 225 2e-57
gb|AAF46146.1| (AE003437) Rpt4 gene product [Drosophila melanoga... 224 2e-57
sp|O64982|PRS7_PRUPE 26S PROTEASE REGULATORY SUBUNIT 7 (26S PROT... 224 3e-57
gb|AAF02852.1|AC009324_1 (AC009324) 26S proteasome ATPase subuni... 224 3e-57
pir||S51042 tat-binding protein homolog - malaria parasite (Plas... 224 4e-57
gb|AAF08391.1|AF145310_1 (AF145310) 26S proteasome regulatory co... 224 4e-57
gi|6324833 ATPase; component of the 26S proteasome cap subunit; ... 223 5e-57
gb|AAA85134.1| (U43720) Sug2p [Saccharomyces cerevisiae] 223 7e-57
sp|P78578|PRS6_ASPNG 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG ... 223 7e-57
emb|CAB63651.1| (AJ251819) 26S proteasome subunit 8 [Fagus sylva... 223 7e-57
gb|AAF54440.1| (AE003684) CG9475 gene product [Drosophila melano... 223 7e-57
pir||T38636 tat binding homolog - fission yeast (Schizosaccharom... 222 1e-56
gb|AAF08388.1|AF145307_1 (AF145307) 26S proteasome regulatory co... 222 1e-56
gb|AAC15706.1| (AF052191) katanin p60 subunit [Strongylocentrotu... 222 2e-56
pir||T33155 hypothetical protein F56H1.4 - Caenorhabditis elegan... 222 2e-56
gb|AAD24194.1|AF134402_1 (AF134402) Tat-binding protein-1 [Droso... 222 2e-56
gi|4506209 proteasome (prosome, macropain) 26S subunit, ATPase, ... 221 2e-56
sp|Q63347|PRS7_RAT 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PROTE... 221 2e-56
sp|O14126|PRSA_SCHPO 26S PROTEASE REGULATORY SUBUNIT 6A >gi|7435... 221 2e-56
gb|AAF35993.1|AC005836_5 (AC005836) 26S Protease Regulatory Subu... 221 2e-56
gi|6320197 (putative) 26S protease subunit; Rpt2p [Saccharomyces... 221 3e-56
sp|P46472|PRS7_XENLA 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PRO... 221 3e-56
sp|O17071|PRSX_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT S1... 221 3e-56
gb|AAF22521.1|AF123390_1 (AF123390) 26S proteasome AAA-ATPase su... 221 3e-56
gb|AAA97498.1| (L17040) ATPase [Saccharomyces cerevisiae] 220 4e-56
sp|P71377|FTH1_HAEIN CELL DIVISION PROTEIN FTSH HOMOLOG 1 >gi|15... 220 4e-56
gb|AAF21247.1|AF048706_1 (AF048706) CAD ATPase; AAA1 [Arabidopsi... 220 4e-56
gb|AAF02853.1|AC009324_2 (AC009324) Putative 26S proteasome ATPa... 219 1e-55
sp|P46471|PRS7_MOUSE 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PRO... 218 2e-55
emb|CAC05251.1| (AL391604) putative mitochondrial respiratory ch... 218 2e-55
emb|CAA16915.2| (AL021767) 26s protease regulatory subunit 7 hom... 217 3e-55
pir||T39558 26S proteinase regulatory subunit 7 - fission yeast ... 217 3e-55
pir||T49507 probable 26S proteasome regulatory particle chain RP... 217 3e-55
emb|CAA11285.1| (AJ223384) 26S proteasome regulatory ATPase subu... 217 4e-55
sp|Q18787|PRS7_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT 7 ... 217 5e-55
pir||T41400 probable peroxisome biosynthesis protein - fission y... 217 5e-55
pir||H72692 probable p60 katanin APE0960 - Aeropyrum pernix (str... 217 5e-55
gi|6322704 putative ATPase, 26S protease subunit component; Rpt1... 215 2e-54
gb|AAF49987.1| (AE003543) CG7257 gene product [Drosophila melano... 215 2e-54
gi|6324691 26S protease regulatory subunit; Rpt5p [Saccharomyces... 214 4e-54
sp|Q09803|SKD1_SCHPO SUPRESSOR PROTEIN OF BEM1/BED5 DOUBLE MUTAN... 213 6e-54
gb|AAF91247.1|AF227503_1 (AF227503) proteasome regulatory ATPase... 212 2e-53
pir||S39349 MSS1 protein homolog - mouse 210 7e-53
gb|AAF52059.1| (AE003603) katanin-60 gene product [Drosophila me... 208 2e-52
gb|AAF34687.1|AF223064_1 (AF223064) putative microtubule severin... 207 5e-52
gi|6325431 AAA-type ATPase; Vps4p [Saccharomyces cerevisiae] >gi... 206 6e-52
emb|CAA63364.1| (X92680) allelic to VPS4 [Saccharomyces cerevisiae] 206 6e-52
sp|O42587|PRSA_XENLA 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BIN... 206 6e-52
pir||T41657 probable metallopeptidase - fission yeast (Schizosa... 205 1e-51
gb|AAF21428.1|AF165422_1 (AF165422) suppressor of K+ transport g... 205 2e-51
sp|P54816|TBP7_CAEEL TAT-BINDING HOMOLOG 7 >gi|7498868|pir||T207... 204 3e-51
gb|AAD38581.1|AF145606_1 (AF145606) BcDNA.GH02678 [Drosophila me... 203 5e-51
emb|CAC12300.1| (AL445066) VAT-2 protein [Thermoplasma acidophilum] 203 5e-51
pir||T02610 YTA11 protein homolog T19L18.5 - Arabidopsis thalian... 201 2e-50
gb|AAC73040.1| (AC005824) putative AAA-type ATPase [Arabidopsis ... 201 2e-50
gb|AAG19908.1| (AE005074) cell division cycle protein; Cdc48e [H... 201 2e-50
gi|6325281 Mitochondrial member of the CDC48/PAS1/SEC18 family o... 200 4e-50
emb|CAA56954.1| (X81067) probable mitochondrial protein; nearly ... 200 4e-50
dbj|BAA03839.1| (D16332) OSD1 gene product [Saccharomyces cerevi... 200 4e-50
gi|11230794 fidgetin-like 1 [Mus musculus] >gi|10442029|gb|AAG17... 199 8e-50
dbj|BAB16447.1| (AP002483) putative AAA-type ATPase [Oryza sativa] 199 1e-49
gb|AAK41191.1| AAA family ATPase, p60 katanin [Sulfolobus solfat... 197 4e-49
gi|11545833 fidgetin-like 1 [Homo sapiens] >gi|10434929|dbj|BAB1... 190 5e-47
gb|AAD31547.1|U53149_5 (U53149) Contains similarity to Pfam doma... 189 1e-46
pir||S37606 SEC18 protein - yeast (Candida albicans) 187 3e-46
sp|P34732|SC18_CANAL VESICULAR-FUSION PROTEIN SEC18 >gi|578124|e... 187 3e-46
gi|6325183 Yta6p [Saccharomyces cerevisiae] >gi|2133218|pir||S61... 186 1e-45
gb|AAF51127.1| (AE003580) CG3326 gene product [Drosophila melano... 185 1e-45
emb|CAB95999.1| (AL360054) AAA family ATPase with similarity to ... 183 6e-45
pir||H71952 ATP-dependent zinc metallopeptidase - Helicobacter p... 182 1e-44
pir||E64486 ATP-dependent 26S proteosome regulatory subunit 8 ho... 179 1e-43
sp|Q58889|PRS2_METJA PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HO... 179 1e-43
sp|P40328|TBP6_YEAST PROBABLE 26S PROTEASE SUBUNIT YTA6 (TAT-BIN... 178 2e-43
pir||T49647 MSP1 related protein [imported] - Neurospora crassa ... 175 2e-42
pir||T03922 hypothetical protein F32D1.1 - Caenorhabditis elegan... 171 3e-41
pir||T40781 26S proteinase subunit - fission yeast (Schizosaccha... 171 3e-41
gi|11181772 fidgetin; fidget [Mus musculus] >gi|10442027|gb|AAG1... 165 2e-39
gi|8922407 fidgetin; fidgetin; hypothetical protein FLJ10405 [Ho... 161 3e-38
gi|11428694 fidgetin; hypothetical protein FLJ10405 [Homo sapiens] 161 3e-38
pir||T18421 hypothetical protein C0140c - malaria parasite (Plas... 161 3e-38
dbj|BAB14567.1| (AK023411) unnamed protein product [Homo sapiens] 160 5e-38
gi|11498884 cell division control protein, AAA family, putative ... 157 4e-37
sp|O27092|PRS2_METTH PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HO... 148 2e-34
sp|P42811|PRS2_METTM PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HO... 142 2e-32
gb|AAB60775.1| (AC000375) Similar to Xenopus TER ATPase (gb|X542... 141 3e-32
emb|CAB62856.1| (AL035475) hypothetical protein MAL4P2.15 [Plasm... 135 2e-30
dbj|BAA83371.1| (AP000391) Similar to Arabidopsis thaliana chrom... 123 7e-27
pir||S57269 hypothetical protein 115 - Sulfolobus solfataricus >... 96 2e-18
gb|AAA64864.1| (U23723) orf300 [Escherichia coli] 94 8e-18
gb|AAB05472.1| (U59625) unknown [Helicobacter pylori] 88 3e-16
pdb|1CZ4|A Chain A, Nmr Structure Of Vat-N: The N-Terminal Domai... 86 1e-15
pir||G81380 probable AAA family ATPase Cj0377 [imported] - Campy... 83 9e-15
>pir||D75046 transitional endoplasmic reticulum atpase PAB1478 - Pyrococcus
abyssi (strain Orsay) >gi|5458778|emb|CAB50265.1|
(AJ248287) TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
[Pyrococcus abyssi]
Length = 840
Score = 1647 bits (4217), Expect = 0.0
Identities = 840/840 (100%), Positives = 840/840 (100%)
Query: 1 MILGRSEPQKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIV 60
MILGRSEPQKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIV
Sbjct: 1 MILGRSEPQKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIV 60
Query: 61 ANPHPDDRGLDIIRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGD 120
ANPHPDDRGLDIIRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGD
Sbjct: 61 ANPHPDDRGLDIIRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGD 120
Query: 121 IVKNNLLGRPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIP 180
IVKNNLLGRPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIP
Sbjct: 121 IVKNNLLGRPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIP 180
Query: 181 KGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFER 240
KGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFER
Sbjct: 181 KGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFER 240
Query: 241 LGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKE 300
LGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKE
Sbjct: 241 LGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKE 300
Query: 301 AEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDA 360
AEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDA
Sbjct: 301 AEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDA 360
Query: 361 LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRF 420
LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRF
Sbjct: 361 LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRF 420
Query: 421 DKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLA 480
DKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLA
Sbjct: 421 DKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLA 480
Query: 481 ALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIE 540
ALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIE
Sbjct: 481 ALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIE 540
Query: 541 VPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKA 600
VPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKA
Sbjct: 541 VPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKA 600
Query: 601 VATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE 660
VATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE
Sbjct: 601 VATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE 660
Query: 661 GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKA 720
GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKA
Sbjct: 661 GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKA 720
Query: 721 RFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELE 780
RFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELE
Sbjct: 721 RFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELE 780
Query: 781 EESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGESTGREPDYFTG 840
EESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGESTGREPDYFTG
Sbjct: 781 EESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGESTGREPDYFTG 840
>pir||H71114 probable cell division control protein (transitional endoplasmic
reticulum ATPase) - Pyrococcus horikoshii
>gi|3257095|dbj|BAA29778.1| (AP000003) 840aa long
hypothetical cell division control protein (transitional
endoplasmic reticulum ATPase) [Pyrococcus horikoshii]
Length = 840
Score = 1552 bits (3974), Expect = 0.0
Identities = 776/840 (92%), Positives = 818/840 (97%)
Query: 1 MILGRSEPQKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIV 60
MILGRSEPQK+EIKLRVAEALKRDVGRGIVRFDR+YQ+MIGVEPGDIVEIEGER+TAAIV
Sbjct: 1 MILGRSEPQKEEIKLRVAEALKRDVGRGIVRFDRRYQKMIGVEPGDIVEIEGERVTAAIV 60
Query: 61 ANPHPDDRGLDIIRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGD 120
AN HPDD+GLDIIRMDGYIRKNAGV+IGD+VTIRRA+VKEAKKVVLAPAQKGVIVQIPGD
Sbjct: 61 ANSHPDDKGLDIIRMDGYIRKNAGVSIGDYVTIRRAQVKEAKKVVLAPAQKGVIVQIPGD 120
Query: 121 IVKNNLLGRPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIP 180
I+KNNLLGRPVVKGDI+VASGR ++YYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIP
Sbjct: 121 IIKNNLLGRPVVKGDIVVASGRGDLYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIP 180
Query: 181 KGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFER 240
KGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAI+KIREMVELPLKHPELFER
Sbjct: 181 KGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIQKIREMVELPLKHPELFER 240
Query: 241 LGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKE 300
LGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKE
Sbjct: 241 LGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKE 300
Query: 301 AEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDA 360
AEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLK RGKVIVI ATNRPDA
Sbjct: 301 AEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKGRGKVIVIGATNRPDA 360
Query: 361 LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRF 420
LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEK+ VIK LK+LEKD+RF
Sbjct: 361 LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKDAVIKVLKDLEKDERF 420
Query: 421 DKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLA 480
+KEKI+KIIEKVSKA SE+EIK+IL+ED N+Y+EVR +LIDKLL+ELAEVTHGFVGADLA
Sbjct: 421 EKEKIEKIIEKVSKANSEDEIKEILKEDGNVYVEVRNRLIDKLLEELAEVTHGFVGADLA 480
Query: 481 ALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIE 540
ALAREAAMVVLRRLI EGKINPEAE+IPREVLEELKVTK DFYEALKMVEPSALREVLIE
Sbjct: 481 ALAREAAMVVLRRLINEGKINPEAESIPREVLEELKVTKRDFYEALKMVEPSALREVLIE 540
Query: 541 VPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKA 600
VPNVHWDDIGGLE+VKQELREAVEWPLKYPKAFK+LGITPPKGVLLYGPPGTGKTLLAKA
Sbjct: 541 VPNVHWDDIGGLEEVKQELREAVEWPLKYPKAFKKLGITPPKGVLLYGPPGTGKTLLAKA 600
Query: 601 VATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE 660
VATES+ANFIA+RGPEVLSKWVGESEKRIREIFRKARQA+PAIIFIDEIDAIAPARGT+E
Sbjct: 601 VATESEANFIAVRGPEVLSKWVGESEKRIREIFRKARQAAPAIIFIDEIDAIAPARGTSE 660
Query: 661 GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKA 720
GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDE+A
Sbjct: 661 GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEEA 720
Query: 721 RFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELE 780
RFEIFKVHTR MPLADDVDL+ELARRTEGYTGADIAAVCREAA+NALRR V + E+LE
Sbjct: 721 RFEIFKVHTRSMPLADDVDLRELARRTEGYTGADIAAVCREAALNALRRVVKSVPKEKLE 780
Query: 781 EESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGESTGREPDYFTG 840
EESE+FL L+VTRKDFE ALKKVKPSV+KYMMEYYRQFEE+RKR+ GES GREPDYFTG
Sbjct: 781 EESEEFLNKLVVTRKDFEEALKKVKPSVSKYMMEYYRQFEEARKRVSGESVGREPDYFTG 840
>dbj|BAA87866.1| (AB018433) Pk-cdcA [Pyrococcus kodakaraensis]
Length = 835
Score = 1379 bits (3529), Expect = 0.0
Identities = 685/839 (81%), Positives = 769/839 (91%), Gaps = 5/839 (0%)
Query: 1 MILGRSEPQKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIV 60
MI G+ + + DEIKLRVAEALKRDVGRGIVRFDRKYQR +GVEPGDIV ++GER+TAAIV
Sbjct: 1 MIFGKEDEKVDEIKLRVAEALKRDVGRGIVRFDRKYQRKLGVEPGDIVALKGERVTAAIV 60
Query: 61 ANPHPDDRGLDIIRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGD 120
AN HPDDRGLDIIRMDGYIR+NAGV+IGD+VT+ RAEV+EAKKVVLAPAQKGV +QIPG+
Sbjct: 61 ANAHPDDRGLDIIRMDGYIRRNAGVSIGDYVTVSRAEVQEAKKVVLAPAQKGVFIQIPGE 120
Query: 121 IVKNNLLGRPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIP 180
IVK NLLGRPVVKGD++VA G++E YS PFDE+ RGFFEAM +GFGELKF+VVNT+P
Sbjct: 121 IVKQNLLGRPVVKGDLVVAGGQNEAVYS---PFDELLRGFFEAMPIGFGELKFVVVNTVP 177
Query: 181 KGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFER 240
KGIVQITYNTEVEVLPQAVEV+EE IPEVTYEDIGGL +AI+KIREMVELPLKHPELFER
Sbjct: 178 KGIVQITYNTEVEVLPQAVEVKEESIPEVTYEDIGGLSDAIQKIREMVELPLKHPELFER 237
Query: 241 LGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKE 300
LGIEPPKGVLLYGPPGTGKTLLAKAVANEANA+FIAINGPEIMSK+YGESEERLREIFKE
Sbjct: 238 LGIEPPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKFYGESEERLREIFKE 297
Query: 301 AEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDA 360
AEENAP+IIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDA
Sbjct: 298 AEENAPSIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDA 357
Query: 361 LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRF 420
LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMP+EPD++KE V++ L+E+ + F
Sbjct: 358 LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPLEPDYDKEAVLRVLREIREKGNF 417
Query: 421 DKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLA 480
D E++ KII +V AK+E E+K+ L++D +Y EVR +LIDK+LDELAEVTHGFVGADLA
Sbjct: 418 DAERVDKIIAEVENAKNESEVKEALKKDAEIYSEVRNRLIDKMLDELAEVTHGFVGADLA 477
Query: 481 ALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIE 540
ALAREAAMVVLRRLIKEGKI+PE E IP EVL+EL+V + DFYEALKMVEPSALREVLIE
Sbjct: 478 ALAREAAMVVLRRLIKEGKISPEQERIPPEVLQELRVRRDDFYEALKMVEPSALREVLIE 537
Query: 541 VPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKA 600
VPNV W+DIGGLEDVKQELREAVEWPLKYPKAF+RLGI PPKG+LLYGPPGTGKTLLAKA
Sbjct: 538 VPNVRWEDIGGLEDVKQELREAVEWPLKYPKAFERLGIEPPKGILLYGPPGTGKTLLAKA 597
Query: 601 VATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE 660
VA ESQANFIAIRGPEVLSKWVGE+EKRIREIFRKARQA+P ++FIDEIDAIAPARG +E
Sbjct: 598 VANESQANFIAIRGPEVLSKWVGETEKRIREIFRKARQAAPTVVFIDEIDAIAPARG-SE 656
Query: 661 GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKA 720
G++VTDR+INQLLTEMDG+ ENSGVVVI ATNRPDI+DPALLRPGRFDRLILVPAPDEKA
Sbjct: 657 GDRVTDRLINQLLTEMDGIQENSGVVVIGATNRPDIIDPALLRPGRFDRLILVPAPDEKA 716
Query: 721 RFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELE 780
R EIFKVHTR +PLA DVDL+ELA++TEGYTGADIAA+ REAA+ A+RR + +L E +E
Sbjct: 717 RLEIFKVHTRRVPLAGDVDLRELAKKTEGYTGADIAALVREAALIAMRRIMRELPREVVE 776
Query: 781 EESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGESTGREPDYFT 839
ESE+FL+ L V++KDFE+A+KKVKPSVT YMMEYYR FEE+RK+ G+ G PDY+T
Sbjct: 777 SESEEFLERLKVSKKDFEMAMKKVKPSVTPYMMEYYRSFEENRKKQAGKERG-GPDYYT 834
>pir||F75154 cell division control protein 48, aaa family (cdc48-1) PAB2086 -
Pyrococcus abyssi (strain Orsay)
>gi|5457827|emb|CAB49317.1| (AJ248284) CELL DIVISION
CONTROL PROTEIN 48, AAA FAMILY (CDC48-1) [Pyrococcus
abyssi]
Length = 795
Score = 1144 bits (2928), Expect = 0.0
Identities = 604/827 (73%), Positives = 679/827 (82%), Gaps = 41/827 (4%)
Query: 9 QKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDR 68
+K E+KL+VA A +RDVGRGIVR DRK R +G+ PGD+VEI G + TAAI +P+D
Sbjct: 3 EKKEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDE 62
Query: 69 GLDIIRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGDIVK---NN 125
GL IIRMDG IRKNAGV +GD VT+R+AEV+EAKKV LAP + ++ D V+
Sbjct: 63 GLGIIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEP---IRFGRDFVEWLHER 119
Query: 126 LLGRPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQ 185
L+GRPVV+GD I + EL F+V T P G+VQ
Sbjct: 120 LVGRPVVRGDYIKVGVLGQ-------------------------ELTFVVTATQPSGVVQ 154
Query: 186 ITYNTEVEVLPQAV-EVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIE 244
IT T+ + + V EV + VTYEDIGGLK+ IEKIREM+ELPLKHPELFE+LGIE
Sbjct: 155 ITEFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIE 214
Query: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304
PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLRE+FKEAEEN
Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEEN 274
Query: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
APAIIFIDEIDAIAPKR EV GEVEKRVV+QLL LMDGLKSRGKVIVI ATNRPDA+DPA
Sbjct: 275 APAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPA 334
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEK 424
LRRPGRFDREIEVGVPD+QGRKEILQIHTRGMPIEPDF K+ V+K L++ +++ +F K
Sbjct: 335 LRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKI- 393
Query: 425 IKKIIEKVSKAKSEEEIKDILRE-DRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALA 483
I K IE+V+K+K EEEI +L++ D LY EV+T+LIDKLLDELA+VTHGFVGADLAALA
Sbjct: 394 IDKAIEEVNKSK-EEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALA 452
Query: 484 REAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPN 543
REAAM LRRLI+EGKI+ EAETIPREVL+ELKVT+ DFYEALKMVEPSALREVLIEVPN
Sbjct: 453 REAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPN 512
Query: 544 VHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
VHWDDIGGLEDVKQELREAVEWPLKYP+AFK GITPPKG+LLYGPPGTGKTLLAKAVAT
Sbjct: 513 VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
Query: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEK 663
ESQANFIA+RGPE+LSKWVGESEK IREIFRKARQA+P +IFIDEIDAIAP RGT + +
Sbjct: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT-DVNR 631
Query: 664 VTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFE 723
VTDRIINQLLTEMDG+ EN+GVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFE
Sbjct: 632 VTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFE 691
Query: 724 IFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAK--LSPEELEE 781
IFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAM A+RRA+ K + P
Sbjct: 692 IFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKAS 751
Query: 782 ESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVG 828
E + K VT KDFE AL+K+ PSV+K MEYYR+ +E K+ G
Sbjct: 752 EIRRLAK---VTMKDFEEALRKIGPSVSKETMEYYRKIQEQFKQARG 795
>pir||B71196 probable transitional endoplasmic reticulum ATPase - Pyrococcus
horikoshii >gi|3258278|dbj|BAA30961.1| (AP000007) 798aa
long hypothetical transitional endoplasmic reticulum
ATPase [Pyrococcus horikoshii]
Length = 798
Score = 1134 bits (2901), Expect = 0.0
Identities = 602/827 (72%), Positives = 681/827 (81%), Gaps = 41/827 (4%)
Query: 9 QKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDR 68
+K EIKL+VA A +RDVGRGIVR DR+ R +GV PGD+VEI G + TAAIV +P+D
Sbjct: 6 EKKEIKLKVASAYQRDVGRGIVRIDRRSMRELGVSPGDVVEIIGTKNTAAIVWPAYPEDE 65
Query: 69 GLDIIRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGDIVK---NN 125
GL IIRMDG IRKNAGV +GD VTIR+A+VKEA+KVVLAP + ++ D V+
Sbjct: 66 GLGIIRMDGTIRKNAGVGLGDEVTIRKADVKEARKVVLAPTEP---IRFGRDFVEWLHER 122
Query: 126 LLGRPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQ 185
L+GRPVV+GD I + V EL F+V T P G+VQ
Sbjct: 123 LVGRPVVRGDYI-------------------------KIGVLGQELTFVVTTTQPSGVVQ 157
Query: 186 ITYNTEVEVLPQAV-EVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIE 244
IT T+ ++ + V EV + VTYEDIGGLK+ IEKIREM+ELPLKHPELFE+LGIE
Sbjct: 158 ITEYTDFDISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIE 217
Query: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304
PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLRE+FKEAEEN
Sbjct: 218 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEEN 277
Query: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
AP+IIFIDEIDAIAPKR EV GEVEKRVV+QLL LMDGLK RGKVIVI ATNRPDALDPA
Sbjct: 278 APSIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKGRGKVIVIGATNRPDALDPA 337
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEK 424
LRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF KE V+K L+ L+K+ +F ++
Sbjct: 338 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFRKEDVLKILEGLKKEGKF-RDV 396
Query: 425 IKKIIEKVSKAKSEEEIKDILRE-DRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALA 483
I K I++V K SE++I +L+E + LY EVRT+L+D LL+ELAEVTHGFVGADLAALA
Sbjct: 397 IDKAIDRVMKV-SEDDIPKVLKELNGELYEEVRTRLVDLLLEELAEVTHGFVGADLAALA 455
Query: 484 REAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPN 543
REAAM LRRLIKEGKI+ EAETIPREVL+ELKVT+ DFYEALKMVEPSALREVLIEVPN
Sbjct: 456 REAAMAALRRLIKEGKIDFEAETIPREVLDELKVTRKDFYEALKMVEPSALREVLIEVPN 515
Query: 544 VHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
VHWDDIGGLE+VKQELREAVEWPLKYP+AF+ GITPPKGVLLYGPPGTGKTLLAKAVAT
Sbjct: 516 VHWDDIGGLEEVKQELREAVEWPLKYPEAFRAYGITPPKGVLLYGPPGTGKTLLAKAVAT 575
Query: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEK 663
ES+ANFIA+RGPEVLSKWVGESEK IREIFRKARQA+P +IFIDEIDAIAP RGT + +
Sbjct: 576 ESEANFIAVRGPEVLSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT-DVNR 634
Query: 664 VTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFE 723
VTDR+INQLLTEMDG+ EN+GVVVIAATNRPDILDPALLRPGRFDRLILVPAPDE+ARFE
Sbjct: 635 VTDRLINQLLTEMDGIQENTGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEEARFE 694
Query: 724 IFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAK--LSPEELEE 781
IFKVHTR MPLADDVDL+ELARRTEGYTGADIAAVCREAAM A+R+A+ K + P +
Sbjct: 695 IFKVHTRSMPLADDVDLRELARRTEGYTGADIAAVCREAAMIAMRKALEKGIIKPGMKAD 754
Query: 782 ESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVG 828
E ++ K VT KDFE ALKK+ PSV+K MEYYR+ +E K+ G
Sbjct: 755 EIKQKAK---VTMKDFEEALKKIGPSVSKETMEYYRKIQEQFKQARG 798
>gi|11499681 cell division control protein 48, AAA family (cdc48-2)
[Archaeoglobus fulgidus] >gi|7435750|pir||B69512 cell
division control protein 48, AAA family (cdc48-2)
homolog - Archaeoglobus fulgidus
>gi|2648442|gb|AAB89157.1| (AE000959) cell division
control protein 48, AAA family (cdc48-2) [Archaeoglobus
fulgidus]
Length = 811
Score = 861 bits (2201), Expect = 0.0
Identities = 458/825 (55%), Positives = 590/825 (71%), Gaps = 47/825 (5%)
Query: 12 EIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDRGLD 71
EI L+V +A D GRGI R D + + PGDI+EIEG R T A V D G +
Sbjct: 6 EITLKVNQAYPSDSGRGIARLDPDTMLKLQISPGDIIEIEGARKTVAKVWRAPKRDWGKN 65
Query: 72 IIRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQK------GVIVQIPGDIVKNN 125
IIR+D +IR+NAGV +GD V +R+ E + AK V+LAP +K GV + G+ +K+
Sbjct: 66 IIRIDRFIRENAGVGVGDVVKVRKVEYQPAKTVILAPLKKMDLRIYGVDI---GEYLKHQ 122
Query: 126 LLGRPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQ 185
L RPVV+GD++ G + SG F + + F+ V T PKG V
Sbjct: 123 FLKRPVVEGDLVPLVGSPAL---SG----------FGRYNQQNQAVVFVAVKTEPKGPVV 169
Query: 186 ITYNTEVEVLPQAVEVREE-KIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIE 244
I T+V + + E +TYEDIGGLKE ++K+RE++ELPL++PELF+RLGIE
Sbjct: 170 IDETTKVVYRDRPAKGFERFGKAGITYEDIGGLKEELQKVREVIELPLRYPELFQRLGIE 229
Query: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304
PPKGVLLYGPPGTGKTL+AKAVANE A F INGPEIMSK+YGESE+RLREIF+EA+EN
Sbjct: 230 PPKGVLLYGPPGTGKTLIAKAVANEIGASFFTINGPEIMSKFYGESEQRLREIFEEAKEN 289
Query: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
AP+IIFIDEID+IAPKREEV GEVE+RVV+QLLTLMDGL+ RG+VIVI ATNR DA+DPA
Sbjct: 290 APSIIFIDEIDSIAPKREEVTGEVERRVVAQLLTLMDGLEERGQVIVIGATNRIDAVDPA 349
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEK 424
LRRPGRFDREIE+GVPD++GR EI QIHTR MP+E + +E V+ A++ ++ D E
Sbjct: 350 LRRPGRFDREIEIGVPDREGRYEIFQIHTRNMPLEAKYSREFVLDAIERFKRQVD-DPEL 408
Query: 425 IKKI---IEKVSKAKSEEEIKDILRE--DRNLYIEVRTKLIDKLLDELAEVTHGFVGADL 479
IK + +++ +++EEE+K ++ + + E+ ++ +L LA+ THGFVGAD+
Sbjct: 409 IKNLDFLYDEIKNSETEEEVKGAVKNLLPQEVIDELEVEITKAMLRSLADQTHGFVGADI 468
Query: 480 AALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLI 539
AL +EAAM LRR + + +N + IP E+LE ++VT DF +AL+ +EPSA+REV +
Sbjct: 469 EALCKEAAMKALRRYLPQIDLNEDE--IPIELLESIRVTWDDFMDALREIEPSAMREVFV 526
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
E+P V W+D+GGLEDVK+E+ EAVEWPLKYP+ FK+ GI PPKGVLLYGPPGTGKTL+AK
Sbjct: 527 EIPKVTWNDVGGLEDVKREIIEAVEWPLKYPEKFKKFGIKPPKGVLLYGPPGTGKTLIAK 586
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA 659
AVA ES+ANFI+I+G ++LSKW+GESEK +R+IFRKARQ +P IIF DEIDAIA RG
Sbjct: 587 AVANESEANFISIKGGQILSKWLGESEKAVRKIFRKARQVAPCIIFFDEIDAIAQMRGID 646
Query: 660 EGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEK 719
EG + +R++NQLLTEMDGL E GVVVI ATNRPDILDPALLRPGRFDR++ V PD+K
Sbjct: 647 EGSRAVERVLNQLLTEMDGLEELHGVVVIGATNRPDILDPALLRPGRFDRMVYVRPPDKK 706
Query: 720 ARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEEL 779
+R IFK+HTR MPL++DVDL+ELA TEGY GADI A+CREA M A+R +
Sbjct: 707 SRLAIFKIHTRDMPLSEDVDLEELADLTEGYVGADIEAICREAVMLAIRENI-------- 758
Query: 780 EEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRK 824
+EK V + F ALKK+KPSV + M+ +Y +FEE +
Sbjct: 759 --NAEK------VEMRHFLEALKKIKPSVNEAMLNFYERFEEKMR 795
>gi|11498895 cell division control protein 48, AAA family (cdc48-1)
[Archaeoglobus fulgidus] >gi|7435749|pir||H69411 cell
division control protein 48, AAA family (cdc48-1)
homolog - Archaeoglobus fulgidus
>gi|2649281|gb|AAB89948.1| (AE001014) cell division
control protein 48, AAA family (cdc48-1) [Archaeoglobus
fulgidus]
Length = 733
Score = 850 bits (2173), Expect = 0.0
Identities = 463/822 (56%), Positives = 574/822 (69%), Gaps = 93/822 (11%)
Query: 6 SEPQKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHP 65
S+ + +EI LRVAEA RDVGRG+ R D G++ GDI+EI G+ AIV +P
Sbjct: 2 SDKKGEEITLRVAEAFYRDVGRGVARIDPAVMEKYGLQSGDIIEIIGKSTVPAIVWPSYP 61
Query: 66 DDRGLDIIRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGDIVKNN 125
+DRG IIR+DG IR NAGV I D V IR+ K A+KV LAP + + + G+
Sbjct: 62 EDRGTGIIRIDGSIRSNAGVGIDDKVRIRKVTAKPAEKVTLAPTEP--VRLMGGEAYLLR 119
Query: 126 LL-GRPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIV 184
LL GRPV+KG I R E++ + L F++ T P G+V
Sbjct: 120 LLEGRPVIKGQKI----RVEVFGHT---------------------LTFVITATRPSGVV 154
Query: 185 QITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIE 244
+T NT +E+ + E + +P+VTYEDIGGLK + +REM+ELPLKHPELF+RLGIE
Sbjct: 155 VVTRNTAIELKEKPAEEVKRAVPDVTYEDIGGLKRELRLVREMIELPLKHPELFQRLGIE 214
Query: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304
PPKGVLLYGPPGTGKTL+AKAVANE +A+FI I+GPEIMSKYYGESE+RLREIF+EA+EN
Sbjct: 215 PPKGVLLYGPPGTGKTLIAKAVANEVDAHFIPISGPEIMSKYYGESEQRLREIFEEAKEN 274
Query: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
AP+IIFIDEID+IAPKREEV GEVE+RVV+QLL LMDGL++RG VIVIAATNRPDA+DPA
Sbjct: 275 APSIIFIDEIDSIAPKREEVTGEVERRVVAQLLALMDGLEARGDVIVIAATNRPDAIDPA 334
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEK 424
LRRPGRFDREIE+ G+P DKE
Sbjct: 335 LRRPGRFDREIEI-----------------GVP-----------------------DKEG 354
Query: 425 IKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAR 484
K+I+E ++ K L ED +L +ELAE+T+GFVGADL AL +
Sbjct: 355 RKEILEIHTR-------KMPLAEDVDL-------------EELAELTNGFVGADLEALCK 394
Query: 485 EAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNV 544
EAAM LRR++ E I+ EAE IP EV+E LKVT+ DF EALK +EPSA+REVL+EVPNV
Sbjct: 395 EAAMHALRRVLPE--IDIEAEEIPAEVIENLKVTREDFMEALKNIEPSAMREVLVEVPNV 452
Query: 545 HWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATE 604
W+DIGGLE KQEL EAVEWPLKYP+ F+ I PP+G+LL+GPPGTGKTLLAKAVA E
Sbjct: 453 KWEDIGGLEHAKQELMEAVEWPLKYPEVFRAANIKPPRGILLFGPPGTGKTLLAKAVANE 512
Query: 605 SQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKV 664
S ANFI+++GPE+LSKWVGESEK +RE+FRKARQ +P +IF DEID++AP RG V
Sbjct: 513 SNANFISVKGPELLSKWVGESEKHVREMFRKARQVAPCVIFFDEIDSLAPRRGGIGDSHV 572
Query: 665 TDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEI 724
T+R+++QLLTE+DGL E VVVIAATNRPD++DPALLRPGR +R I +P PD+KAR EI
Sbjct: 573 TERVVSQLLTELDGLEELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEI 632
Query: 725 FKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESE 784
FK+H RG PLADDV+++ELA +TEGY+GADI AVCREA M A+R + P EE++
Sbjct: 633 FKIHLRGKPLADDVNIEELAEKTEGYSGADIEAVCREAGMLAIRELI---KPGMTREEAK 689
Query: 785 KFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRM 826
+ K L +T+K FE ALKKV+PS+TK +E Y + E RM
Sbjct: 690 EAAKKLKITKKHFEEALKKVRPSLTKEDVEKYEKLIEDFHRM 731
>pir||A69086 cell division control protein Cdc48 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622767|gb|AAB86112.1| (AE000923) cell division
control protein Cdc48 [Methanobacterium
thermoautotrophicum]
Length = 732
Score = 836 bits (2136), Expect = 0.0
Identities = 464/807 (57%), Positives = 579/807 (71%), Gaps = 101/807 (12%)
Query: 10 KDEIKLRVAEAL-KRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDR 68
K EIKL+VAEAL ++DVGRGI R D +G+ GDI+EIEG+++TAA V + D
Sbjct: 6 KKEIKLKVAEALAQQDVGRGIARVDPACMEKLGLSDGDIIEIEGKKLTAATVVSSQ-SDI 64
Query: 69 GLDIIRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGDIVKNNLLG 128
GL IIR+DGY+RKNAG +IG+ VT+RRA+VK+A+KVVLAP + VI++ GDI ++ L
Sbjct: 65 GLGIIRIDGYLRKNAGASIGEEVTVRRADVKDAQKVVLAPVDQEVIIR--GDI-RSAFLN 121
Query: 129 RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQITY 188
R +VKGDIIV+ R + S G FDE FR F + +G E+K VV+T P G+V++T
Sbjct: 122 RVLVKGDIIVSGIRQHI--SGGGLFDEFFRDFMDISPLG--EIKLAVVSTSPAGVVRVTP 177
Query: 189 NTEVEVLPQAVEVRE----EKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIE 244
+T+VE+ + V+V + + + +VTYEDIGGLKE ++K+REM+E+PLK PELFERLGI
Sbjct: 178 STQVEMQQKPVDVSKLEGVKNLVDVTYEDIGGLKEEVKKVREMIEIPLKRPELFERLGIT 237
Query: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304
PPKGVL++GPPGTGKTLLAKAVANE++A+FIAINGPEIMSKY G SEERLRE F+EAEEN
Sbjct: 238 PPKGVLMHGPPGTGKTLLAKAVANESDAHFIAINGPEIMSKYVGGSEERLREFFEEAEEN 297
Query: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
AP+IIFIDEIDAIAPKRE+V GEVE+R+V+QLLTLMDGLKSRG+V+VI ATNRPDALDPA
Sbjct: 298 APSIIFIDEIDAIAPKREDVSGEVERRIVAQLLTLMDGLKSRGQVVVIGATNRPDALDPA 357
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEK 424
L + RFD+E
Sbjct: 358 -------------------------------------------------LRRPGRFDRE- 367
Query: 425 IKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTK---LIDKL-LDELAEVTHGFVGADLA 480
E + D RE+R +++ T+ L D + LDELAE+THGFVGADL
Sbjct: 368 ------------IEIGVPD--REERKEILQIHTRGMPLADDVDLDELAEITHGFVGADLE 413
Query: 481 ALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIE 540
+L +E+AM VLRR++ E K + E IP+EVL+++ VT+ADF +ALK ++PSALREVL++
Sbjct: 414 SLCKESAMRVLRRVLPEIKADEE---IPKEVLKKMVVTRADFKDALKEIQPSALREVLVQ 470
Query: 541 VPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKA 600
VPNV WDDIGGLE KQELREAVEWPLKYP FK+ GI PPKG+LL+G PGTGKTLLAKA
Sbjct: 471 VPNVSWDDIGGLEGAKQELREAVEWPLKYPDRFKKFGIRPPKGILLHGSPGTGKTLLAKA 530
Query: 601 VATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR-GTA 659
VA ESQANFIA++GPE+LSKWVGESEK +RE+FRKARQ +P +IF DEID+IA R G+
Sbjct: 531 VANESQANFIAVKGPELLSKWVGESEKGVREVFRKARQTAPTVIFFDEIDSIASVRSGST 590
Query: 660 EGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEK 719
VT R++NQLLTE+DGL E V VIAATNRPDILDPALLRPGRFDR + V PD++
Sbjct: 591 ADSGVTQRVVNQLLTEIDGLEELQDVAVIAATNRPDILDPALLRPGRFDRHVKVEDPDKE 650
Query: 720 ARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEEL 779
AR IF+VHT+ MPLADDVDL++LA +TEGY GADI AVCREAAM LR + +
Sbjct: 651 ARLAIFRVHTKDMPLADDVDLEKLAEKTEGYVGADIEAVCREAAMLTLR--------DNM 702
Query: 780 EEESEKFLKSLIVTRKDFEVALKKVKP 806
+ E V+ K F A++KVKP
Sbjct: 703 DAEE--------VSMKYFLEAMEKVKP 721
Score = 314 bits (795), Expect = 3e-84
Identities = 167/308 (54%), Positives = 222/308 (71%), Gaps = 6/308 (1%)
Query: 506 TIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEW 565
T P V+ T+ + + K V+ S L V + +V ++DIGGL++ +++RE +E
Sbjct: 167 TSPAGVVRVTPSTQVEMQQ--KPVDVSKLEGVK-NLVDVTYEDIGGLKEEVKKVREMIEI 223
Query: 566 PLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGES 625
PLK P+ F+RLGITPPKGVL++GPPGTGKTLLAKAVA ES A+FIAI GPE++SK+VG S
Sbjct: 224 PLKRPELFERLGITPPKGVLMHGPPGTGKTLLAKAVANESDAHFIAINGPEIMSKYVGGS 283
Query: 626 EKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSGV 685
E+R+RE F +A + +P+IIFIDEIDAIAP R GE V RI+ QLLT MDGL V
Sbjct: 284 EERLREFFEEAEENAPSIIFIDEIDAIAPKREDVSGE-VERRIVAQLLTLMDGLKSRGQV 342
Query: 686 VVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELAR 745
VVI ATNRPD LDPAL RPGRFDR I + PD + R EI ++HTRGMPLADDVDL ELA
Sbjct: 343 VVIGATNRPDALDPALRRPGRFDREIEIGVPDREERKEILQIHTRGMPLADDVDLDELAE 402
Query: 746 RTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVK 805
T G+ GAD+ ++C+E+AM LRR + ++ + EE ++ LK ++VTR DF+ ALK+++
Sbjct: 403 ITHGFVGADLESLCKESAMRVLRRVLPEIKAD--EEIPKEVLKKMVVTRADFKDALKEIQ 460
Query: 806 PSVTKYMM 813
PS + ++
Sbjct: 461 PSALREVL 468
Score = 240 bits (606), Expect = 5e-62
Identities = 128/270 (47%), Positives = 180/270 (66%), Gaps = 19/270 (7%)
Query: 193 EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLY 252
E+ P A+ ++P V+++DIGGL+ A +++RE VE PLK+P+ F++ GI PPKG+LL+
Sbjct: 458 EIQPSALREVLVQVPNVSWDDIGGLEGAKQELREAVEWPLKYPDRFKKFGIRPPKGILLH 517
Query: 253 GPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFID 312
G PGTGKTLLAKAVANE+ A FIA+ GPE++SK+ GESE+ +RE+F++A + AP +IF D
Sbjct: 518 GSPGTGKTLLAKAVANESQANFIAVKGPELLSKWVGESEKGVREVFRKARQTAPTVIFFD 577
Query: 313 EIDAIAPKREEVVGE--VEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGR 370
EID+IA R + V +RVV+QLLT +DGL+ V VIAATNRPD LDPAL RPGR
Sbjct: 578 EIDSIASVRSGSTADSGVTQRVVNQLLTEIDGLEELQDVAVIAATNRPDILDPALLRPGR 637
Query: 371 FDREIEVGVPDKQGRKEILQIHTRGMPI--EPDFEK-------------ETVIKALKELE 415
FDR ++V PDK+ R I ++HT+ MP+ + D EK E V + L
Sbjct: 638 FDRHVKVEDPDKEARLAIFRVHTKDMPLADDVDLEKLAEKTEGYVGADIEAVCREAAMLT 697
Query: 416 KDDRFDKEKI--KKIIEKVSKAKSEEEIKD 443
D D E++ K +E + K K + +++
Sbjct: 698 LRDNMDAEEVSMKYFLEAMEKVKPKGGVEE 727
>sp|Q58556|YB56_METJA CELL DIVISION CYCLE PROTEIN 48 HOMOLOG MJ1156
>gi|2118117|pir||C64444 cell division control protein
CDC48 homolog - Methanococcus jannaschii
>gi|1591785|gb|AAB99153.1| (U67557) cell division
control protein 48 (cdc48), AAA family [Methanococcus
jannaschii]
Length = 903
Score = 821 bits (2098), Expect = 0.0
Identities = 457/798 (57%), Positives = 559/798 (69%), Gaps = 98/798 (12%)
Query: 14 KLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITA-AIVANPHPDDRGLDI 72
+L+VAEA + DVGRGI R D +G++PGD++EIEG + A AIV +D G I
Sbjct: 4 ELKVAEAYQGDVGRGIARIDPYTMEELGLKPGDVIEIEGPKGKAYAIVYRGFLEDAGKGI 63
Query: 73 IRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPG--DIVKNNLLGRP 130
IR+DGY+R+NAGV IGD V ++R E+KEAKKVVLAP Q I PG D VK +LG+
Sbjct: 64 IRIDGYLRQNAGVAIGDRVKVKRVEIKEAKKVVLAPTQP--IRFGPGFEDFVKRKILGQV 121
Query: 131 VVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQITYNT 190
+ KG + + V L F+VV+T P G V++T T
Sbjct: 122 LSKGSKVT-------------------------IGVLGTALTFVVVSTTPAGPVRVTDFT 156
Query: 191 EVEVLPQAV-EVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGV 249
VE+ + V E++E K+P+VTYEDIGGLKE ++K+REM+ELP++HPELFE+LGIEPPKGV
Sbjct: 157 HVELKEEPVSEIKETKVPDVTYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGV 216
Query: 250 LLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAII 309
LL GPPGTGKTLLAKAVANEA A F INGPEIMSKY GE+EE LR+IF+EAEENAP+II
Sbjct: 217 LLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSII 276
Query: 310 FIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPG 369
FIDEIDAIAPKR+E GEVE+R+V+QLLTLMDGLK RG+V+VI ATNRP+ALDPALRRPG
Sbjct: 277 FIDEIDAIAPKRDEATGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRPNALDPALRRPG 336
Query: 370 RFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKII 429
RFD+E I+
Sbjct: 337 -------------------------------------------------RFDRE----IV 343
Query: 430 EKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMV 489
V + +EI I + L +V LD LA+VTHGFVGADLAAL +EAAM
Sbjct: 344 IGVPDREGRKEILQIHTRNMPLAEDVD-------LDYLADVTHGFVGADLAALCKEAAMR 396
Query: 490 VLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDI 549
LRR++ I+ EAE IP+EVL+ LKVT DF EALK VEPSA+REVL+EVPNV W+DI
Sbjct: 397 ALRRVLPS--IDLEAEEIPKEVLDNLKVTMDDFKEALKDVEPSAMREVLVEVPNVKWEDI 454
Query: 550 GGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANF 609
GGLE+VKQELREAVEWPLK + F+++G+ PPKGVLL+GPPGTGKTLLAKAVA ES ANF
Sbjct: 455 GGLEEVKQELREAVEWPLKAKEVFEKIGVRPPKGVLLFGPPGTGKTLLAKAVANESGANF 514
Query: 610 IAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRII 669
I+++GPE+ SKWVGESEK IREIFRKARQ++P IIF DEIDAIAP RG VTD+++
Sbjct: 515 ISVKGPEIFSKWVGESEKAIREIFRKARQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVV 574
Query: 670 NQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHT 729
NQLLTE+DG+ E VVVIAATNRPDI+DPALLRPGR DR+ILVP PDEKAR +IFK+HT
Sbjct: 575 NQLLTELDGMEEPKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHT 634
Query: 730 RGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELE---EESEKF 786
R M LA+DV+L+ELA++TEGYTGADI A+CREAAM A+R ++ K P ++E E +
Sbjct: 635 RSMNLAEDVNLEELAKKTEGYTGADIEALCREAAMLAVRESIGK--PWDIEVKLRELINY 692
Query: 787 LKSLIVTRKDFEVALKKV 804
L+S+ T + V L V
Sbjct: 693 LQSISGTFRAAAVELNSV 710
Score = 303 bits (767), Expect = 6e-81
Identities = 162/298 (54%), Positives = 215/298 (71%), Gaps = 5/298 (1%)
Query: 517 VTKADFYEALKMVEP-SALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKR 575
V DF EP S ++E +VP+V ++DIGGL++ +++RE +E P+++P+ F++
Sbjct: 150 VRVTDFTHVELKEEPVSEIKET--KVPDVTYEDIGGLKEEVKKVREMIELPMRHPELFEK 207
Query: 576 LGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRK 635
LGI PPKGVLL GPPGTGKTLLAKAVA E+ ANF I GPE++SK+VGE+E+ +R+IF +
Sbjct: 208 LGIEPPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEE 267
Query: 636 ARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPD 695
A + +P+IIFIDEIDAIAP R A GE V R++ QLLT MDGL VVVI ATNRP+
Sbjct: 268 AEENAPSIIFIDEIDAIAPKRDEATGE-VERRLVAQLLTLMDGLKGRGQVVVIGATNRPN 326
Query: 696 ILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADI 755
LDPAL RPGRFDR I++ PD + R EI ++HTR MPLA+DVDL LA T G+ GAD+
Sbjct: 327 ALDPALRRPGRFDREIVIGVPDREGRKEILQIHTRNMPLAEDVDLDYLADVTHGFVGADL 386
Query: 756 AAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMM 813
AA+C+EAAM ALRR + + E EE ++ L +L VT DF+ ALK V+PS + ++
Sbjct: 387 AALCKEAAMRALRRVLPSID-LEAEEIPKEVLDNLKVTMDDFKEALKDVEPSAMREVL 443
>pir||D72613 probable transitional endoplasmic reticulum ATPase APE1367 -
Aeropyrum pernix (strain K1) >gi|5105048|dbj|BAA80362.1|
(AP000061) 726aa long hypothetical transitional
endoplasmic reticulum ATPase [Aeropyrum pernix]
Length = 726
Score = 809 bits (2068), Expect = 0.0
Identities = 457/823 (55%), Positives = 563/823 (67%), Gaps = 109/823 (13%)
Query: 13 IKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEI-EGERITAAIVANPHPDDRGLD 71
++LRV+EA RDVGR IVR DR+ +GVE GD V++ +G+R A+V PDD G
Sbjct: 6 VELRVSEAYPRDVGRKIVRIDRQTAARLGVEVGDFVKVSKGDRSVVAVVWPLRPDDEGRG 65
Query: 72 IIRMDGYIRKNAGVTIGDFVTIRRAE-VKEAKKVVLAPAQKGVIVQIPGDIVKNNLLGRP 130
IIRMDGY+R GVT+GD VT+ +AE V+ A KVVLAP + + + VK LL +P
Sbjct: 66 IIRMDGYLRAALGVTVGDTVTVEKAEKVEPASKVVLAPTEPIRFGRDFVEYVKEFLLRKP 125
Query: 131 VVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQITYNT 190
+ +G+ I+ + G L +VV+T P V +T T
Sbjct: 126 ISRGETIIVP---------------VLEG-----------LPLVVVSTQPAHFVYVTEAT 159
Query: 191 EVEVLPQAVEVREEK---IPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPK 247
EVE+ + V E+ +P+VT+EDIG L+EA E+IRE+VELP+KHPE+F+ LGIEPPK
Sbjct: 160 EVEIREKPVREEIERLRGVPKVTWEDIGDLEEAKERIREIVELPMKHPEIFKHLGIEPPK 219
Query: 248 GVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPA 307
G+LLYGPPGTGKTLLAKA+ANE AYFI+INGPEIMSKYYGESE+RLREIFKEAEENAP+
Sbjct: 220 GILLYGPPGTGKTLLAKALANEIGAYFISINGPEIMSKYYGESEQRLREIFKEAEENAPS 279
Query: 308 IIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRR 367
IIFIDEIDAIAPKREEV GEVEKRVV+QLLTLMDGLK RG+VIVI ATNRPDA+DPALR
Sbjct: 280 IIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKERGRVIVIGATNRPDAIDPALR- 338
Query: 368 PGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKK 427
+ GR F++E E+ D+ + +I K
Sbjct: 339 --------------RPGR----------------FDREI------EIRPPDKRARAEILK 362
Query: 428 IIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAA 487
+ RN+ + D LD+LAE+THG+ GADLAALA+EAA
Sbjct: 363 V------------------HTRNMPLAE-----DVDLDKLAEMTHGYTGADLAALAKEAA 399
Query: 488 MVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWD 547
M LRR I+EGKIN EA+ IP VL+ELKVT DF EA+KM+ P+ +RE+ +EVP V W
Sbjct: 400 MAALRRFIREGKINFEAKEIPATVLKELKVTMKDFMEAMKMIRPTLIREIYVEVPEVRWS 459
Query: 548 DIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQA 607
DIGGLE+ KQ LREAVEWPLK+P+ F+++GI PP+GVLL+GPPGTGKTLLAKAVATES A
Sbjct: 460 DIGGLEEAKQALREAVEWPLKHPEIFEKMGIRPPRGVLLFGPPGTGKTLLAKAVATESGA 519
Query: 608 NFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA-EGEKVTD 666
NFIA+RGPE+LSKWVGESE+ IR+IF +ARQA+PA++F DEIDAIAPARG + VTD
Sbjct: 520 NFIAVRGPEILSKWVGESERAIRKIFERARQAAPAVVFFDEIDAIAPARGARFDTSGVTD 579
Query: 667 RIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFK 726
RI+NQ+L EMDG+ S VVVI ATNRPDILDPALLRPGRFDRLI VP PD++AR EIFK
Sbjct: 580 RIVNQMLAEMDGIQPLSNVVVIGATNRPDILDPALLRPGRFDRLIYVPPPDKEARKEIFK 639
Query: 727 VHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKF 786
+HT+ +PL +DVDL++LA TEGYTGADI AV REA M LR E+LE
Sbjct: 640 IHTKKVPLGEDVDLEKLAEMTEGYTGADIEAVVREAVMAKLR--------EKLEVGK--- 688
Query: 787 LKSLIVTRKDFEVALKKVKPSVTKY-MMEYYRQFEESRKRMVG 828
V + F ALKKV PS+TK ++ Y R +E +K +G
Sbjct: 689 -----VEMRHFLEALKKVPPSLTKEDILRYERLAKELKKLTLG 726
>sp|Q07590|SAV_SULAC SAV PROTEIN >gi|1076162|pir||S43859 ATPase - Sulfolobus
acidocaldarius >gi|310600|gb|AAA72002.1| (L17042) ATPase
[Sulfolobus acidocaldarius]
Length = 780
Score = 797 bits (2035), Expect = 0.0
Identities = 436/828 (52%), Positives = 560/828 (66%), Gaps = 99/828 (11%)
Query: 13 IKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDRGLDI 72
IK RV EA +RDVG+ + R R + VE GD +EI G+ +A+ D D
Sbjct: 38 IKFRVTEARQRDVGKKVARISETSMRKLNVEAGDYIEIIGQDGNSALAQVMPAYDISDDE 97
Query: 73 IRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGDIVKNNLLGRPVV 132
IR+DGYIRK+ V IGD VT+R+ V A KVVLAP Q + VK+ L+ +P+
Sbjct: 98 IRIDGYIRKSIKVGIGDDVTVRKTNVSPASKVVLAPTQPIRFDNSFVEYVKDTLMDKPLA 157
Query: 133 KGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQITYNTEV 192
KG+ + + + G L+ VVNT P V +T +T +
Sbjct: 158 KGETL-------------------------PIPIYTGTLELTVVNTQPSNYVYVTGSTNI 192
Query: 193 EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLY 252
E+ + V+ P+V++EDIG L+EA +KIRE+VE P++HPELF+RLGI+PPKG+LLY
Sbjct: 193 EIREEPVKESSLAYPKVSWEDIGDLEEAKQKIREIVEWPMRHPELFQRLGIDPPKGILLY 252
Query: 253 GPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFID 312
GPPGTGKTLLA+A+ NE AYFI +NGPEIMSK+YGESE+R+REIFKEAEENAP+IIFID
Sbjct: 253 GPPGTGKTLLARALRNEIGAYFITVNGPEIMSKFYGESEQRIREIFKEAEENAPSIIFID 312
Query: 313 EIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFD 372
EIDAIAPKRE+V GEVEKRVV+QLLTLMDG+K RG+VIVI ATNRPDA+DPALRRPG
Sbjct: 313 EIDAIAPKREDVTGEVEKRVVAQLLTLMDGIKGRGRVIVIGATNRPDAIDPALRRPG--- 369
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKV 432
RFD+E +I
Sbjct: 370 ----------------------------------------------RFDREI--EIRPPD 381
Query: 433 SKAKSEEEIKDILR-EDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVL 491
+K + KDIL+ RN+ I T +D LD+LAE+T+G+ GADLAALA+EAA+ L
Sbjct: 382 TKGR-----KDILQVHTRNMPI---TDDVD--LDKLAEMTYGYTGADLAALAKEAAIYAL 431
Query: 492 RRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGG 551
RR + E K+N + TIP E+++ELKV+ DF ALK ++PS LREV +EVP V+W+DIGG
Sbjct: 432 RRFVDEKKLNLDQPTIPAEIIKELKVSMNDFLNALKSIQPSLLREVYVEVPKVNWNDIGG 491
Query: 552 LEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIA 611
L++VKQ+LREAVEWPL++P+ F + G+TPPKG+LL+GPPGTGKT+LAKAVATES ANFIA
Sbjct: 492 LDNVKQQLREAVEWPLRFPELFTKSGVTPPKGILLFGPPGTGKTMLAKAVATESGANFIA 551
Query: 612 IRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQ 671
+RGPE+LSKWVGESEK IREIFRKARQA+P +IF DEID+IAP RG + VT+RI+NQ
Sbjct: 552 VRGPEILSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSIAPIRGLSTDSGVTERIVNQ 611
Query: 672 LLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG 731
LL EMDG+V + VV+IAATNRPDILDPALLRPGRFDRLI VP PD+ ARFEI KVHT+
Sbjct: 612 LLAEMDGIVPLNKVVIIAATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKN 671
Query: 732 MPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVA---KLSPEELEEESEKFLK 788
+PLA+DV L+++A + EGYTGAD+ A+ REA +NA+R + K S +E + E + K
Sbjct: 672 VPLAEDVSLEDIAEKAEGYTGADLEALVREATINAMRSIYSMCDKQSRDECKGNMECYQK 731
Query: 789 ---------SLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMV 827
S V+++DFE AL VK S+T+ ++ Y +F + KR +
Sbjct: 732 HIKECMNKTSFKVSKEDFEKALNVVKASLTQADIQRYERFSKELKRAI 779
>gb|AAK40746.1| AAA family ATPase [Sulfolobus solfataricus]
Length = 769
Score = 792 bits (2022), Expect = 0.0
Identities = 438/840 (52%), Positives = 564/840 (67%), Gaps = 105/840 (12%)
Query: 4 GRSEPQKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEI---EGERITAAIV 60
G+ ++KLRV EA +RDVGR + R +G+E GD VEI G + A++
Sbjct: 20 GKMNNMSQQLKLRVVEARQRDVGRKVARITDYTISRLGIENGDYVEIIGPSGSALAQALI 79
Query: 61 ANPHPDDRGLDIIRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGD 120
+ D+ IR+DGYIR++ GV IGD VT++RA+V++A KVVLAP Q Q +
Sbjct: 80 GDGIADNE----IRVDGYIRRSIGVGIGDEVTVKRAQVQDATKVVLAPTQPISFSQSFVE 135
Query: 121 IVKNNLLGRPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIP 180
VK+ L+ +P+ +G+ I ++ G + F+VV+T P
Sbjct: 136 YVKDWLMDKPISRGETI-------------------------SVPTYVGSIDFVVVSTQP 170
Query: 181 KGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFER 240
V+IT T +E+ + V+ +P+VT+EDIG L++ EKIRE+VELP++HPE+F+
Sbjct: 171 SQSVRITGRTSLEIRQEPVK-ESAAVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQH 229
Query: 241 LGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKE 300
LGIEPPKGVLLYGPPG GKTLLA+A+ANE AYF +INGPEIMSK+YGESE+RLREIF+E
Sbjct: 230 LGIEPPKGVLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEE 289
Query: 301 AEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDA 360
AE+N+PAIIFIDEIDAIAPKREEV GEVEKRVV+QLLTLMDG+K RGKVIVI ATNRPDA
Sbjct: 290 AEKNSPAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGIKGRGKVIVIGATNRPDA 349
Query: 361 LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRF 420
+DPALRRPG RF
Sbjct: 350 VDPALRRPG-------------------------------------------------RF 360
Query: 421 DKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLA 480
D+E I + AK+ +EI + + L +V LD+++E THG+ GADLA
Sbjct: 361 DRE----IEIRPPDAKARKEILQVHTRNMPLAEDVD-------LDKISEQTHGYTGADLA 409
Query: 481 ALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIE 540
ALAREAAM LRR I E KIN E E IP +VL+ELKVT DF +A+K ++P+ LREV +E
Sbjct: 410 ALAREAAMNALRRFINERKINLEQEQIPVDVLKELKVTMQDFIDAMKFIQPTLLREVYVE 469
Query: 541 VPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKA 600
VP V W+DIGGLE+ KQ+LREAVEWPLK+P+ F++LGI PPKG+LL+GPPGTGKT+LAKA
Sbjct: 470 VPKVKWEDIGGLEEAKQQLREAVEWPLKFPEMFEKLGIRPPKGILLFGPPGTGKTMLAKA 529
Query: 601 VATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE 660
VATES ANFIA+RGPE+LSKWVGESEK +REIFR+ARQ +P +IF DEID+IAP RG
Sbjct: 530 VATESGANFIAVRGPEILSKWVGESEKAVREIFRRARQTAPCVIFFDEIDSIAPMRGFTH 589
Query: 661 GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKA 720
VT+RI+NQLL+EMDG+ + VVVIAATNRPDILDPALLRPGRFDRLI VP PDEKA
Sbjct: 590 DSGVTERIVNQLLSEMDGIQSLNRVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKA 649
Query: 721 RFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRR----AVAKLSP 776
R EI K++TR +P+ V+L+ELA++ EGYTGADI A+ RE M LR+ + K
Sbjct: 650 RIEILKIYTRTLPIDSSVNLEELAKKLEGYTGADIEALARETTMKVLRQKYYDCLNKAKK 709
Query: 777 EELEEE-SEKFLKSLI------VTRKDFEVALKKVKPSVTKY-MMEYYRQFEESRKRMVG 828
E ++E ++K +KS + +T +DF +K V PS+TK +M Y +E ++ ++G
Sbjct: 710 ECKDQECTDKTIKSCMSNLEIKITMQDFLDTMKIVTPSLTKADIMRYENMVKEIKRSVIG 769
>pir||B72479 probable transitional endoplasmic reticulum ATPase APE2474 -
Aeropyrum pernix (strain K1) >gi|5106179|dbj|BAA81490.1|
(AP000064) 699aa long hypothetical transitional
endoplasmic reticulum ATPase [Aeropyrum pernix]
Length = 699
Score = 783 bits (2001), Expect = 0.0
Identities = 432/801 (53%), Positives = 545/801 (67%), Gaps = 114/801 (14%)
Query: 40 IGVEPGDIVEIEGERITAAIVANPHPDDRGLDIIRMDGYIRKNAGVTIGDFVTIRRAEVK 99
+GVEPGD+VEIEG++ T AIV +P+D GLDIIRMDG +R+NA V IG+ V +R+ V+
Sbjct: 4 LGVEPGDVVEIEGKKKTVAIVMPAYPEDMGLDIIRMDGILRRNADVNIGEKVIVRKTSVR 63
Query: 100 EAKKVVLAPAQKGVIVQIPGD-IVKNNLLGRPVVKGDIIVASGRSEMYYSSGTPFDEIFR 158
A KV LAP + V VK L G P+ +GD++V +
Sbjct: 64 TATKVKLAPVSYTMTVDEGFKRYVKKKLQGVPITEGDVVVVPVIGQA------------- 110
Query: 159 GFFEAMSVGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLK 218
++ VV+ PKG V ++ T V+VL + V + ++P+VTYEDIGGLK
Sbjct: 111 ------------VQLQVVDARPKGAVIVSEETIVDVLEKPVA--QSRVPKVTYEDIGGLK 156
Query: 219 EAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAIN 278
E IEK+REMVELPL+HPE+F+RLGIEPPKG+LLYGPPGTGKTLLAKAVANEA+AYFI+IN
Sbjct: 157 EVIEKVREMVELPLRHPEIFKRLGIEPPKGILLYGPPGTGKTLLAKAVANEADAYFISIN 216
Query: 279 GPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLT 338
GPEIMSKYYGESE+RLREIF+EA++NAP+IIFIDEIDAIAPKR+EVVGEVE+RVV+QLL
Sbjct: 217 GPEIMSKYYGESEQRLREIFEEAKKNAPSIIFIDEIDAIAPKRDEVVGEVERRVVAQLLA 276
Query: 339 LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPI 398
LMDGL++RG VIVIAATN RP D
Sbjct: 277 LMDGLEARGNVIVIAATN----------RPNAID-------------------------- 300
Query: 399 EPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTK 458
L + RFD+E + +K + + +++ T+
Sbjct: 301 -------------PALRRPGRFDREIEVPLPDKHGRLE---------------ILQIHTR 332
Query: 459 LI----DKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEE 514
+ D L++LAE+T GF GADLAALAREAAM LRR + E I+ + E+IP EVLE+
Sbjct: 333 HMPLAEDMDLEKLAEMTKGFTGADLAALAREAAMYALRRYLPE--IDLDQESIPVEVLEK 390
Query: 515 LKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFK 574
+ VT DF +AL+ + PS LRE+ IEVP V W DIGGLEDVKQELRE VEWPLK+P+AF
Sbjct: 391 MVVTMEDFLKALREITPSGLREIQIEVPEVRWSDIGGLEDVKQELREVVEWPLKHPEAFT 450
Query: 575 RLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFR 634
R+GI PP+GVLL+GPPGTGKTLLAKAVATES ANFIA+RGPE+LSKWVGESE+ IREIF
Sbjct: 451 RMGIRPPRGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESERAIREIFA 510
Query: 635 KARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRP 694
KARQ +PA++F DEIDAIAP RGT G +VT+RI++QLLTE+DG+ + VVVIAATNRP
Sbjct: 511 KARQHAPAVVFFDEIDAIAPVRGTDVGTRVTERIVSQLLTEIDGVSDLHDVVVIAATNRP 570
Query: 695 DILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGAD 754
D++DPAL+RPGR +++I VP PD +R EI ++HTR +PLA+DVDL E+ARRTEGYTGAD
Sbjct: 571 DMVDPALMRPGRLEKMIYVPPPDFSSRLEILRIHTRKVPLAEDVDLAEIARRTEGYTGAD 630
Query: 755 IAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMME 814
I A+ REA++ ALR + + V+ + FEVALKKVKPSVT M+E
Sbjct: 631 IEALVREASLAALREDI----------------NAAEVSMRHFEVALKKVKPSVTPQMVE 674
Query: 815 YYRQFEESRKRMVGESTGREP 835
YY+++ E+ K+ E P
Sbjct: 675 YYKRWLETVKQRQEEVKREAP 695
>gb|AAK40524.1| AAA family ATPase [Sulfolobus solfataricus]
Length = 769
Score = 778 bits (1987), Expect = 0.0
Identities = 435/849 (51%), Positives = 566/849 (66%), Gaps = 108/849 (12%)
Query: 7 EPQKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPD 66
+PQ+ E+ LRV EA ++DVGRG VR D I V PGD+VEIEG R TAA+ P+
Sbjct: 10 KPQRKELILRVMEARQKDVGRGKVRIDIDLLSQIDVSPGDVVEIEGTRKTAALAWPLSPE 69
Query: 67 DRGL---DIIRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGDI-- 121
D DIIRMDG RKNAGV+IGD V +R+A VK A V LAP+ + V PG I
Sbjct: 70 DTTTGEKDIIRMDGITRKNAGVSIGDKVIVRKAIVKPASTVKLAPSNFSITVD-PGFISY 128
Query: 122 VKNNLLGRPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPK 181
VK L P+V+GD ++ + + F VV P
Sbjct: 129 VKKRLKEFPLVEGDTVLIPVLGQA-------------------------IPFTVVQVKPA 163
Query: 182 GIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERL 241
GIV + +T + + + VE + P VTYEDIGG+K IEK+RE+VELPL+HPELF+RL
Sbjct: 164 GIVLVNDDTIISISDKPVE--PSRYPRVTYEDIGGMKNIIEKVRELVELPLRHPELFKRL 221
Query: 242 GIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEA 301
GIEPPKG+LLYGPPG GKTLLAKA+ANE +AYF +INGPEIMSK+YGESE+RLREIF++A
Sbjct: 222 GIEPPKGILLYGPPGVGKTLLAKAIANETDAYFTSINGPEIMSKFYGESEQRLREIFEDA 281
Query: 302 EENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDAL 361
+++APAIIF+DEIDAIAPKR+EV+GEVE+RVV+QLLTLMDGL++RG VIVIAATNRP A+
Sbjct: 282 KKHAPAIIFVDEIDAIAPKRDEVIGEVERRVVAQLLTLMDGLENRGNVIVIAATNRPSAV 341
Query: 362 DPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFD 421
DPALRRPG RFD
Sbjct: 342 DPALRRPG-------------------------------------------------RFD 352
Query: 422 KEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAA 481
+E + +K + EI I RN+ + +K +D L++LA++THG+ GADL+A
Sbjct: 353 REIEIPLPDKQGRL----EILQI--HTRNMPL---SKDVD--LEKLADMTHGYTGADLSA 401
Query: 482 LAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEV 541
L REAAM LRR + KI+ + IP E+LE ++V DF A K + PS LRE+ IEV
Sbjct: 402 LVREAAMNSLRRYLP--KIDLNQDKIPPEILESMEVKMEDFINAFKEIVPSGLREIYIEV 459
Query: 542 PNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAV 601
P V W DIGGLE++K+EL+E VE+PLKY + ++ GI PPKG+LL+GPPGTGKT+LAKAV
Sbjct: 460 PEVKWTDIGGLEEIKEELKEVVEYPLKYSELYQNSGIEPPKGILLFGPPGTGKTMLAKAV 519
Query: 602 ATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEG 661
ATES ANFIA+RGPE+LSKWVGESEK +REIFRKAR +PA+IF DEID+IAP RG +
Sbjct: 520 ATESGANFIAVRGPEILSKWVGESEKAVREIFRKARMYAPAVIFFDEIDSIAPIRGISYD 579
Query: 662 EKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 721
VT+RI+NQLL EMDG+ + VVVIAATNRPDILDPALLRPGRF++LI VP PD++AR
Sbjct: 580 SGVTERIVNQLLAEMDGIEKLENVVVIAATNRPDILDPALLRPGRFEKLIYVPPPDKRAR 639
Query: 722 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAV---------- 771
EI KVHTR + L +D+ L+++A +TEGYTGAD+AA+ REA M A+R ++
Sbjct: 640 TEILKVHTRNIALGEDISLEDVAEKTEGYTGADLAALVREATMRAIRESMKICIDKTNEN 699
Query: 772 AKLSPEELEEESEK---FLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVG 828
K + E +++ K + + V+ + FE A++KVKPSVT+ M+++Y+ + E ++ +
Sbjct: 700 CKPTDAECRDKTMKECMKVNGVKVSLRHFEEAMRKVKPSVTQDMLQFYQNWVEKARQQLP 759
Query: 829 ESTGREPDY 837
++T + Y
Sbjct: 760 KTTVKPSTY 768
>sp|O05209|VAT_THEAC VCP-LIKE ATPASE >gi|7484232|pir||T37458 VCP-like ATPase -
Thermoplasma acidophilum >gi|1916752|gb|AAC45089.1|
(U78072) VCP-like ATPase [Thermoplasma acidophilum]
>gi|10640117|emb|CAC11969.1| (AL445065) VAT ATPase
(VCP-like ATPase) [Thermoplasma acidophilum]
Length = 745
Score = 762 bits (1946), Expect = 0.0
Identities = 422/822 (51%), Positives = 542/822 (65%), Gaps = 100/822 (12%)
Query: 13 IKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDRGLDI 72
I LRVAEA D G VR D +R++ E GD+VEIE R T V P+D I
Sbjct: 7 IILRVAEANSTDPGMSRVRLDESSRRLLDAEIGDVVEIEKVRKTVGRVYRARPEDENKGI 66
Query: 73 IRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPA----QKGVIVQIPGDIVKNNLLG 128
+R+D +R N G +IGD V +R+ + AKKV LAP Q+ + + V+ L+
Sbjct: 67 VRIDSVMRNNCGASIGDKVKVRKVRTEIAKKVTLAPIIRKDQRLKFGEGIEEYVQRALIR 126
Query: 129 RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGI-VQIT 187
RP+++ D I G + G L F VV T+P + V+I
Sbjct: 127 RPMLEQDNISVPGLT---------------------LAGQTGLLFKVVKTLPSKVPVEIG 165
Query: 188 YNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPK 247
T++E+ + E++ ++YEDIGGL E + KIREM+ELPLKHPELFERLGI PPK
Sbjct: 166 EETKIEIREEPASEVLEEVSRISYEDIGGLSEQLGKIREMIELPLKHPELFERLGITPPK 225
Query: 248 GVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPA 307
GV+LYGPPGTGKTL+A+AVANE+ A F++INGPEIMSKYYG+SE++LREIF +AEE AP+
Sbjct: 226 GVILYGPPGTGKTLIARAVANESGANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPS 285
Query: 308 IIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRR 367
IIFIDEID+IAPKREEV GEVE+RVV+QLLTLMDG+K RG VIVI ATNR DA+DPALRR
Sbjct: 286 IIFIDEIDSIAPKREEVQGEVERRVVAQLLTLMDGMKERGHVIVIGATNRIDAIDPALRR 345
Query: 368 PGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKK 427
PGR F++E E+ DR +++I
Sbjct: 346 PGR-------------------------------FDREI------EIGVPDRNGRKEILM 368
Query: 428 IIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAA 487
I RN+ + + + +K L+E+A+ T+GFVGADLAAL RE+A
Sbjct: 369 I------------------HTRNMPLGMSEEEKNKFLEEMADYTYGFVGADLAALVRESA 410
Query: 488 MVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWD 547
M LRR + E ++ + IP E+LE++ VT+ DF ALK +EPS+LREV++EVPNVHWD
Sbjct: 411 MNALRRYLPEIDLD---KPIPTEILEKMVVTEDDFKNALKSIEPSSLREVMVEVPNVHWD 467
Query: 548 DIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQA 607
DIGGLEDVK+E++E VE PL P FKRLGI P KG LLYGPPG GKTLLAKAVATES A
Sbjct: 468 DIGGLEDVKREIKETVELPLLKPDVFKRLGIRPSKGFLLYGPPGVGKTLLAKAVATESNA 527
Query: 608 NFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDR 667
NFI+I+GPEVLSKWVGESEK IREIF+KA+Q +PAI+F+DEID+IAP RGT VT+R
Sbjct: 528 NFISIKGPEVLSKWVGESEKAIREIFKKAKQVAPAIVFLDEIDSIAPRRGTTSDSGVTER 587
Query: 668 IINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKV 727
I+NQLLT +DG+ +GVVVI ATNRPDI+DPALLR GRFD+LI +P PD++AR I KV
Sbjct: 588 IVNQLLTSLDGIEVMNGVVVIGATNRPDIMDPALLRAGRFDKLIYIPPPDKEARLSILKV 647
Query: 728 HTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFL 787
HT+ MPLA DVDL ++A+RTEGY GAD+ +CREA MNA R +P+
Sbjct: 648 HTKNMPLAPDVDLNDIAQRTEGYVGADLENLCREAGMNAYRE-----NPD---------- 692
Query: 788 KSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGE 829
+ V++K+F ALK ++PSV + ++++YR E+ + V E
Sbjct: 693 -ATSVSQKNFLDALKTIRPSVDEEVIKFYRTLSETMSKSVSE 733
Score = 300 bits (759), Expect = 6e-80
Identities = 183/438 (41%), Positives = 267/438 (60%), Gaps = 43/438 (9%)
Query: 409 KALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNL-------------YIEV 455
+ L + E D + EK++K + +V +A+ E+E K I+R D + +V
Sbjct: 31 RRLLDAEIGDVVEIEKVRKTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDKVKVRKV 90
Query: 456 RTKLIDKLL-------DELAEVTHGFVGADLAALAREAAMVV-------LRRLIKEGKIN 501
RT++ K+ D+ + G AL R + L + G +
Sbjct: 91 RTEIAKKVTLAPIIRKDQRLKFGEGIEEYVQRALIRRPMLEQDNISVPGLTLAGQTGLLF 150
Query: 502 PEAETIPREVLEEL-KVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELR 560
+T+P +V E+ + TK + E EP++ EVL EV + ++DIGGL + ++R
Sbjct: 151 KVVKTLPSKVPVEIGEETKIEIRE-----EPAS--EVLEEVSRISYEDIGGLSEQLGKIR 203
Query: 561 EAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSK 620
E +E PLK+P+ F+RLGITPPKGV+LYGPPGTGKTL+A+AVA ES ANF++I GPE++SK
Sbjct: 204 EMIELPLKHPELFERLGITPPKGVILYGPPGTGKTLIARAVANESGANFLSINGPEIMSK 263
Query: 621 WVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLV 680
+ G+SE+++REIF KA + +P+IIFIDEID+IAP R +GE V R++ QLLT MDG+
Sbjct: 264 YYGQSEQKLREIFSKAEETAPSIIFIDEIDSIAPKREEVQGE-VERRVVAQLLTLMDGMK 322
Query: 681 ENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVD- 739
E V+VI ATNR D +DPAL RPGRFDR I + PD R EI +HTR MPL +
Sbjct: 323 ERGHVIVIGATNRIDAIDPALRRPGRFDREIEIGVPDRNGRKEILMIHTRNMPLGMSEEE 382
Query: 740 ----LKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRK 795
L+E+A T G+ GAD+AA+ RE+AMNALRR + ++ + + + L+ ++VT
Sbjct: 383 KNKFLEEMADYTYGFVGADLAALVRESAMNALRRYLPEIDLD--KPIPTEILEKMVVTED 440
Query: 796 DFEVALKKVKPSVTKYMM 813
DF+ ALK ++PS + +M
Sbjct: 441 DFKNALKSIEPSSLREVM 458
>gb|AAG19919.1| (AE005075) cell division cycle protein; Cdc48c [Halobacterium sp.
NRC-1]
Length = 742
Score = 702 bits (1791), Expect = 0.0
Identities = 385/821 (46%), Positives = 523/821 (62%), Gaps = 98/821 (11%)
Query: 11 DEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDRGL 70
+E++L VA+A D GRGI R D + + PGDI+EIEG TAA V D
Sbjct: 2 NEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGAETTAAKVWRADRQDWNT 61
Query: 71 DIIRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGD---IVKNNLL 127
D IR+DG+ R+NA V IG+ V IR+A+ ++A +VLAP ++ VQ D +VK +L
Sbjct: 62 DTIRIDGFTRQNAEVGIGERVKIRKADAEKADTLVLAPPEEAS-VQFGSDAAGMVKRQIL 120
Query: 128 GRPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQIT 187
RPVV DI+ S+ PF M + + V T P+G+ +T
Sbjct: 121 KRPVVARDIVPVMS------STNHPF----------MRSPGQAIPLIAVETEPEGVCLVT 164
Query: 188 YNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPK 247
+T+VE+ + + E +TYEDIGGL+ I+++REMVELP+KHP++F++LGIEPP+
Sbjct: 165 EDTDVELREEPISGFERTGGGITYEDIGGLENEIQRVREMVELPMKHPQIFQKLGIEPPQ 224
Query: 248 GVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPA 307
GVLL+GPPGTGKTLLAKAVANE +A F +I GPEI+SKYYGESE++LREIF++A++++P+
Sbjct: 225 GVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDDSPS 284
Query: 308 IIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRR 367
IIFIDE+D+IAPKRE+V GEVE+RVV+QLLT+MDGL+ RG+VIVIAATNR DA+DPALRR
Sbjct: 285 IIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLEGRGQVIVIAATNRVDAVDPALRR 344
Query: 368 PGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKK 427
PGRFDREIE+GVPD+ GR+EIL+IHTRGMP+ D T+ D
Sbjct: 345 PGRFDREIEIGVPDEIGREEILKIHTRGMPLSDDVNLSTLADDTHGFVGAD--------- 395
Query: 428 IIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAA 487
IE +SK + ++ L E ++ LID++
Sbjct: 396 -IESLSKEAAMRALRRYLPEIDLDEEDIPPSLIDRM------------------------ 430
Query: 488 MVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWD 547
+++R +G ++ + REV L+E+P + WD
Sbjct: 431 --IVKREDFKGALSEVEPSAMREV--------------------------LVELPKITWD 462
Query: 548 DIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQA 607
D+GGL + K ++E+VEWPL P+ F R+G+ PP GVLLYGPPGTGKTL+AKAVA E+ A
Sbjct: 463 DVGGLTEAKNNVKESVEWPLNQPEKFTRMGVEPPAGVLLYGPPGTGKTLMAKAVANETNA 522
Query: 608 NFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDR 667
NFI++RGP++LSKWVGESEK IR+ FRKARQ +P +IF DE+D++AP RG G V++R
Sbjct: 523 NFISVRGPQLLSKWVGESEKAIRQTFRKARQVAPTVIFFDELDSLAPGRGQTGGNNVSER 582
Query: 668 IINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKV 727
++NQLLTE+DGL E V+VIAATNRPDI+DPAL+R GRFDRL+ V P + R +I K+
Sbjct: 583 VVNQLLTELDGLEEMEEVMVIAATNRPDIIDPALIRSGRFDRLVQVGQPGIEGREQILKI 642
Query: 728 HTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFL 787
HT+ PLA DV L+ELA R +GY G+D+A + REAA+ ALR E+ ++
Sbjct: 643 HTQDTPLAADVSLRELAERADGYVGSDLANIAREAAIEALR------DDEDADD------ 690
Query: 788 KSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVG 828
V F A++ V+P++T +MEYY Q E+ K G
Sbjct: 691 ----VGMAHFRAAMENVRPTITDDLMEYYDQVEDQFKGSQG 727
>sp|P46464|CDCH_HALSA CDCH PROTEIN >gi|629399|pir||S47018 cdcH protein - Halobacterium
salinarum >gi|517390|emb|CAA56097.1| (X79560) cdcH
[Halobacterium salinarum]
Length = 742
Score = 700 bits (1788), Expect = 0.0
Identities = 384/821 (46%), Positives = 523/821 (62%), Gaps = 98/821 (11%)
Query: 11 DEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDRGL 70
+E++L VA+A D GRGI R D + + PGDI++IEG TAA V D
Sbjct: 2 NEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIDIEGAETTAAKVWRADRQDWNT 61
Query: 71 DIIRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGD---IVKNNLL 127
D IR+DG+ R+NA V IG+ V IR+A+ ++A +VLAP ++ VQ D +VK +L
Sbjct: 62 DTIRIDGFTRQNAEVGIGERVKIRKADAEKADTLVLAPPEEAS-VQFGSDAAGMVKRQIL 120
Query: 128 GRPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQIT 187
RPVV DI+ S+ PF M + + V T P+G+ +T
Sbjct: 121 KRPVVARDIVPVMS------STNHPF----------MRSPGQAIPLIAVETEPEGVCLVT 164
Query: 188 YNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPK 247
+T+VE+ + + E +TYEDIGGL+ I+++REMVELP+KHP++F++LGIEPP+
Sbjct: 165 EDTDVELREEPISGFERTGGGITYEDIGGLENEIQRVREMVELPMKHPQIFQKLGIEPPQ 224
Query: 248 GVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPA 307
GVLL+GPPGTGKTLLAKAVANE +A F +I GPEI+SKYYGESE++LREIF++A++++P+
Sbjct: 225 GVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDDSPS 284
Query: 308 IIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRR 367
IIFIDE+D+IAPKRE+V GEVE+RVV+QLLT+MDGL+ RG+VIVIAATNR DA+DPALRR
Sbjct: 285 IIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLEGRGQVIVIAATNRVDAVDPALRR 344
Query: 368 PGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKK 427
PGRFDREIE+GVPD+ GR+EIL+IHTRGMP+ D T+ D
Sbjct: 345 PGRFDREIEIGVPDEIGREEILKIHTRGMPLSDDVNLSTLADDTHGFVGAD--------- 395
Query: 428 IIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAA 487
IE +SK + ++ L E ++ LID++
Sbjct: 396 -IESLSKEAAMRALRRYLPEIDLDEEDIPPSLIDRM------------------------ 430
Query: 488 MVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWD 547
+++R +G ++ + REV L+E+P + WD
Sbjct: 431 --IVKREDFKGALSEVEPSAMREV--------------------------LVELPKITWD 462
Query: 548 DIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQA 607
D+GGL + K ++E+VEWPL P+ F R+G+ PP GVLLYGPPGTGKTL+AKAVA E+ A
Sbjct: 463 DVGGLTEAKNNVKESVEWPLNQPEKFTRMGVEPPAGVLLYGPPGTGKTLMAKAVANETNA 522
Query: 608 NFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDR 667
NFI++RGP++LSKWVGESEK IR+ FRKARQ +P +IF DE+D++AP RG G V++R
Sbjct: 523 NFISVRGPQLLSKWVGESEKAIRQTFRKARQVAPTVIFFDELDSLAPGRGQTGGNNVSER 582
Query: 668 IINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKV 727
++NQLLTE+DGL E V+VIAATNRPDI+DPAL+R GRFDRL+ V P + R +I K+
Sbjct: 583 VVNQLLTELDGLEEMEEVMVIAATNRPDIIDPALIRSGRFDRLVQVGQPGIEGREQILKI 642
Query: 728 HTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFL 787
HT+ PLA DV L+ELA R +GY G+D+A + REAA+ ALR E+ ++
Sbjct: 643 HTQDTPLAADVSLRELAERADGYVGSDLANIAREAAIEALR------DDEDADD------ 690
Query: 788 KSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVG 828
V F A++ V+P++T +MEYY Q E+ K G
Sbjct: 691 ----VGMAHFRAAMENVRPTITDDLMEYYDQVEDQFKGSQG 727
>gb|AAG19776.1| (AE005063) cell division cycle protein; Cdc48b [Halobacterium sp.
NRC-1]
Length = 759
Score = 645 bits (1646), Expect = 0.0
Identities = 369/827 (44%), Positives = 502/827 (60%), Gaps = 105/827 (12%)
Query: 13 IKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANP---HPDDRG 69
+KL V ++D GRG+ DR + +E GD V I+G+ VA +P+D G
Sbjct: 1 MKLTVKPLKQKDAGRGLAAVDRDSMDELALENGDYVVIDGQGDHGRAVARVWPGYPEDDG 60
Query: 70 LDIIRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGDI---VKNNL 126
++R+DG +RK A V I D VT+ A++K A V +A Q +++ G+I V++ L
Sbjct: 61 DGVVRIDGRLRKEADVGIDDQVTVEPADIKPAGGVTVALPQN---LRVRGNIAPMVRDRL 117
Query: 127 LGRPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQI 186
GRPV G I S GF ++ ++ + T P G V +
Sbjct: 118 NGRPVTAGQTIPISF-----------------GFGGMSTISGQQIPVKIAETEPSGTVVV 160
Query: 187 TYNTEV--------EVLPQAVEVRE--EKIPEVTYEDIGGLKEAIEKIREMVELPLKHPE 236
+ +TE+ E+ P A E E + P VTYEDIGGL +E++REM+ELP++HPE
Sbjct: 161 SNDTEIQLSERPAEEIAPGAGEAAETGDPTPNVTYEDIGGLDGELEQVREMIELPMRHPE 220
Query: 237 LFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLRE 296
LF++LGI+PPKGVLL+GPPGTGKTL+AKAVANE +A+F I+GPEIMSKYYGESEE+LRE
Sbjct: 221 LFQQLGIDPPKGVLLHGPPGTGKTLIAKAVANEIDAHFETISGPEIMSKYYGESEEKLRE 280
Query: 297 IFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATN 356
+F EAEENAPAI+F+DE+D+IAPKR E G+VE+RVV+QLL+LMDGL+ RG V VIAATN
Sbjct: 281 VFDEAEENAPAIVFVDELDSIAPKRGETQGDVERRVVAQLLSLMDGLEDRGDVTVIAATN 340
Query: 357 RPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEK 416
R DA+DPALRR GRFDREIE+GVPD+ GRKEILQ+HTRGMP+ D + + ++
Sbjct: 341 RVDAIDPALRRGGRFDREIEIGVPDQDGRKEILQVHTRGMPLVEDIDLDDYAESTHGFVG 400
Query: 417 DDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYI-EVRTKLIDKLLDELAEVTHGFV 475
D IE ++K + ++ + R D +L E+ +L++ + A+
Sbjct: 401 AD----------IESLAKEAAMNALRRV-RPDIDLESDEIDAELLESISITEADFKRALN 449
Query: 476 GADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALR 535
G + +AL REV E+
Sbjct: 450 GIEPSAL--------------------------REVFVEV-------------------- 463
Query: 536 EVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKT 595
P+ W D+GGL D K+ LRE ++WPL YP F + + KGVLLYGPPGTGKT
Sbjct: 464 ------PDTTWADVGGLTDTKERLRETIQWPLDYPDVFSEMDLQSAKGVLLYGPPGTGKT 517
Query: 596 LLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPA 655
LLAKAVA E+ +NFI+++GPE+L+K+VGESEK +RE+F KAR +P ++F DEIDAIA
Sbjct: 518 LLAKAVANEANSNFISVKGPELLNKYVGESEKGVREVFEKARSNAPTVVFFDEIDAIAGQ 577
Query: 656 RGTAEGEK-VTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVP 714
RG A + V +R+++QLLTE+DG+ VVV+A +NRPD++D ALLRPGR DR I VP
Sbjct: 578 RGRATSDSGVGERVVSQLLTELDGIEALEDVVVVATSNRPDLIDDALLRPGRLDRHIHVP 637
Query: 715 APDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKL 774
PD AR I VHTR PLADDVDL +A+R +G+ GAD+ A+ REA MNA R + +
Sbjct: 638 VPDADARRAILDVHTRDKPLADDVDLDVVAQRMDGFVGADVEALVREATMNATREFINSV 697
Query: 775 SPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEE 821
P + + + ++ VT FE AL +V SV + E Y + E+
Sbjct: 698 DPADASDS----VGNVRVTMAHFEAALGEVTASVDADVKENYEEIEQ 740
>gb|AAG20864.1| (AE005154) cell division cycle protein; Cdc48d [Halobacterium sp.
NRC-1]
Length = 737
Score = 620 bits (1582), Expect = e-176
Identities = 362/816 (44%), Positives = 498/816 (60%), Gaps = 121/816 (14%)
Query: 13 IKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGER--ITAAIVANPHPDDRGL 70
++L V + RD G G+ DR + IGV GD V IEG T A V + D G
Sbjct: 1 MRLTVKQLKNRDPGSGMAVIDRDALQEIGVSSGDFVAIEGRNGGRTVARVWPSNTSDAGR 60
Query: 71 DIIRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGDI---VKNNLL 127
IIR+DG +R+ A V+I D V + + EV+ A +V ++ Q +QI GD+ ++ +L+
Sbjct: 61 GIIRIDGQLRQAANVSIDDRVEVEKTEVEPADRVTVSLPQN---LQIRGDLGSHLREHLV 117
Query: 128 GRPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFG--------ELKFMVVNTI 179
+ V G + A +GFG + VV+T
Sbjct: 118 DQAVRAGQTV-------------------------AFPIGFGMFSGRSGRRIPLRVVDTQ 152
Query: 180 PKGIVQITYNTEVEVLPQAV--------EVREEKIPEVTYEDIGGLKEAIEKIREMVELP 231
P G V + TE+E+ Q+ E P +TYEDIGGL + +E++REM+ELP
Sbjct: 153 PSGTVVVQNTTEIEIADQSAQEVSVESGEPENTTAPALTYEDIGGLDDELEQVREMIELP 212
Query: 232 LKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESE 291
++HPELF LGIEPPKGVLL+GPPGTGKTL+AKAVANE +A+F I+GPEIMSKYYGESE
Sbjct: 213 MRHPELFGTLGIEPPKGVLLHGPPGTGKTLIAKAVANEIDAHFQTISGPEIMSKYYGESE 272
Query: 292 ERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIV 351
E+LR++F+EAEENAPAI+FIDE+D+IAPKRE+V G+VE+RVV+QLL+LMDGL
Sbjct: 273 EQLRDVFEEAEENAPAIVFIDELDSIAPKREDVSGDVERRVVAQLLSLMDGL-------- 324
Query: 352 IAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKAL 411
+++G+ ++ R ++P
Sbjct: 325 -----------------------------EERGQLTVIGTTNRVDAVDP----------- 344
Query: 412 KELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVR-TKLIDKL-LDELAE 469
L + RFD+E E + D ++ L I R L D + LD AE
Sbjct: 345 -ALRRPGRFDRE-------------IEIGVPDHDGREKILQIHTRGMPLGDGVDLDRYAE 390
Query: 470 VTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMV 529
T GFVGADL L +E+AM LRR+ + ++ + E IP ++L+ ++VT+ DF EAL+ +
Sbjct: 391 NTQGFVGADLENLVKESAMHALRRIRPD--LDLDEEEIPADILDSIEVTENDFKEALRGI 448
Query: 530 EPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGP 589
EPSALREV +EVP+V WD +GGL+D K+ L+E V+WPL++ A++++ + P KGVLLYGP
Sbjct: 449 EPSALREVFVEVPDVTWDHVGGLDDAKERLQETVQWPLEHADAYEQVALEPAKGVLLYGP 508
Query: 590 PGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEI 649
PGTGKTLLAKAVA E+ +NFI+I+GPE+ +K+VGESE+ +RE+F KAR+ +P ++F DEI
Sbjct: 509 PGTGKTLLAKAVANEANSNFISIKGPELFNKYVGESERGVREVFSKARENAPTVVFFDEI 568
Query: 650 DAIAPARGTAEGE-KVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFD 708
DAIA RG G+ V +R+++QLLTE+DGL E +VVIA TNRPD++D ALLRPGR D
Sbjct: 569 DAIASERGQGVGDSNVGERVVSQLLTELDGLEELEDIVVIATTNRPDLIDDALLRPGRLD 628
Query: 709 RLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALR 768
R + V PDE AR EIF++HT PLA+DVD+ EL RT+GY GADI AVCREAA A+R
Sbjct: 629 RHVAVDEPDEAARREIFEIHTEDKPLAEDVDVDELVERTDGYVGADIEAVCREAATVAVR 688
Query: 769 RAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKV 804
V + E E + ++ + FE AL++V
Sbjct: 689 EYVRATASAESANVDE-----IELSIEHFEQALEEV 719
Score = 271 bits (685), Expect = 3e-71
Identities = 136/269 (50%), Positives = 189/269 (69%), Gaps = 2/269 (0%)
Query: 542 PNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAV 601
P + ++DIGGL+D +++RE +E P+++P+ F LGI PPKGVLL+GPPGTGKTL+AKAV
Sbjct: 188 PALTYEDIGGLDDELEQVREMIELPMRHPELFGTLGIEPPKGVLLHGPPGTGKTLIAKAV 247
Query: 602 ATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEG 661
A E A+F I GPE++SK+ GESE+++R++F +A + +PAI+FIDE+D+IAP R G
Sbjct: 248 ANEIDAHFQTISGPEIMSKYYGESEEQLRDVFEEAEENAPAIVFIDELDSIAPKREDVSG 307
Query: 662 EKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 721
+ V R++ QLL+ MDGL E + VI TNR D +DPAL RPGRFDR I + PD R
Sbjct: 308 D-VERRVVAQLLSLMDGLEERGQLTVIGTTNRVDAVDPALRRPGRFDREIEIGVPDHDGR 366
Query: 722 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
+I ++HTRGMPL D VDL A T+G+ GAD+ + +E+AM+ALRR L +E EE
Sbjct: 367 EKILQIHTRGMPLGDGVDLDRYAENTQGFVGADLENLVKESAMHALRRIRPDLDLDE-EE 425
Query: 782 ESEKFLKSLIVTRKDFEVALKKVKPSVTK 810
L S+ VT DF+ AL+ ++PS +
Sbjct: 426 IPADILDSIEVTENDFKEALRGIEPSALR 454
>gb|AAB40928.2| (U83085) cell division cycle protein 48 [Dictyostelium discoideum]
Length = 793
Score = 615 bits (1570), Expect = e-175
Identities = 352/836 (42%), Positives = 503/836 (60%), Gaps = 112/836 (13%)
Query: 7 EPQKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGE--RITAAIVANPH 64
E +K +L V EA+ D +V + + + GD + I+G+ R T IV +
Sbjct: 17 ERKKAPNRLFVEEAINDD--NSVVTLNPETMDQLQFFRGDTLLIKGKKRRDTVCIVLSDP 74
Query: 65 PDDRGLDIIRMDGYIRKNAGVTIGDFVTIRR-AEVKEAKKVVLAPAQKGVIVQIPGDIVK 123
D IRM+ +R N V +GD +++ + ++VK K++ + P I + G++
Sbjct: 75 TIDPSK--IRMNKVVRNNLRVRLGDMISVHQCSDVKYGKRIHVLPIDD-TIEGLSGNLFD 131
Query: 124 NNLLG------RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVN 177
L RPV KGD+ + G G ++F VV
Sbjct: 132 LYLKPYFLEAYRPVRKGDLFLVRG-------------------------GMRAVEFKVVE 166
Query: 178 TIPKGIVQITYNTEVEVLPQAVEVREE-KIPEVTYEDIGGLKEAIEKIREMVELPLKHPE 236
T P + T + +AV+ +E ++ EV Y+DIGG+++ + +IRE+VELPL+HP+
Sbjct: 167 TDPGEYCIVAPETFIHCEGEAVKREDEDRLDEVGYDDIGGVRKQLGQIRELVELPLRHPQ 226
Query: 237 LFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLRE 296
LF+ +G++PPKG+LLYGPPG GKT++A+AVANE A+F INGPEIMSK GESE LR+
Sbjct: 227 LFKNIGVKPPKGILLYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 286
Query: 297 IFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATN 356
F+EAE+NAP+IIFIDEID+IAPKRE+ GEVE+R+VSQLLTLMDGLKSR VIV+ ATN
Sbjct: 287 AFEEAEKNAPSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATN 346
Query: 357 RPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEK 416
RP+++DPALRR GRFDREI++ +PD GR EI++IHT K ++
Sbjct: 347 RPNSIDPALRRFGRFDREIDITIPDATGRLEIMRIHT------------------KNMKL 388
Query: 417 DDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVG 476
D+ D L+ +A THG+VG
Sbjct: 389 DETVD------------------------------------------LEAVANETHGYVG 406
Query: 477 ADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALRE 536
ADLAAL E+A+ +R K I+ E ETI E+LE + VT+ F AL + PSALRE
Sbjct: 407 ADLAALCTESALQCIRE--KMDVIDLEDETISAEILESMSVTQDHFRTALTLSNPSALRE 464
Query: 537 VLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTL 596
++EVP W+DIGGLE VK+ELRE V++P+++P+ F++ G+ P KGVL YGPPG GKTL
Sbjct: 465 TVVEVPTTTWEDIGGLEGVKRELRETVQYPVEHPEKFRKFGMQPSKGVLFYGPPGCGKTL 524
Query: 597 LAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR 656
LAKA+A E QANFI+I+GPE+L+ W GESE +RE+F KARQA+P ++F DE+D+IA +R
Sbjct: 525 LAKAIANECQANFISIKGPELLTMWFGESEANVRELFDKARQAAPCVLFFDELDSIARSR 584
Query: 657 GTAEGEK--VTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVP 714
G+++G+ DR+INQ+LTEMDG+ V +I ATNRPDI+DPA+LRPGR D+LI +P
Sbjct: 585 GSSQGDAGGAGDRVINQILTEMDGMNAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 644
Query: 715 APDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAV--- 771
PD +R I K P+A DVDL+ L ++T+G++GAD+ +C+ A A+R ++
Sbjct: 645 LPDLPSRVAILKACLNKSPVAKDVDLEFLGQKTQGFSGADLTEICQRACKLAIRESIEKD 704
Query: 772 -----AKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEES 822
A+ + + E + +TR F+ A++ + SV+ + Y F ++
Sbjct: 705 IESTKARQESGDTKMEDDSVDPVPEITRDHFQEAMRSARRSVSDNDIRKYESFAQT 760
>pir||T46169 CDC48-like protein - Arabidopsis thaliana
>gi|6630743|emb|CAB64226.1| (AL132958) CDC48-like
protein [Arabidopsis thaliana]
Length = 815
Score = 610 bits (1557), Expect = e-173
Identities = 358/853 (41%), Positives = 513/853 (59%), Gaps = 111/853 (13%)
Query: 7 EPQKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPD 66
E +K +L V EA+ D +V + + GD + I+G++ + +
Sbjct: 23 EKKKAANRLVVDEAINDD--NSVVSLHPDTMEKLQLFRGDTILIKGKKRKDTVCIALADE 80
Query: 67 DRGLDIIRMDGYIRKNAGVTIGDFVTIRRA-EVKEAKKVVLAPAQ---KGVIVQIPGDIV 122
IRM+ +R N V +GD +++ + +VK +V + P +GV I +
Sbjct: 81 TCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHILPLDDTIEGVSGNIFDAYL 140
Query: 123 KNNLLG--RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIP 180
K L RPV KGD+ + G G ++F V+ T P
Sbjct: 141 KPYFLEAYRPVRKGDLFLVRG-------------------------GMRSIEFKVIETDP 175
Query: 181 KGIVQITYNTEVEVLPQAVEVR-EEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFE 239
+ +TE+ + ++ EE++ EV Y+D+GG+++ + +IRE+VELPL+HP+LF+
Sbjct: 176 AEYCVVAPDTEIFCEGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFK 235
Query: 240 RLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFK 299
+G++PPKG+LLYGPPG+GKTL+A+AVANE A+F INGPEIMSK GESE LR+ F+
Sbjct: 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFE 295
Query: 300 EAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPD 359
EAE+NAP+IIFIDEID+IAPKRE+ GEVE+R+VSQLLTLMDGLKSR VIV+ ATNRP+
Sbjct: 296 EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 355
Query: 360 ALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDR 419
++DPALRR GRFDREI++ G+P D
Sbjct: 356 SIDPALRRFGRFDREIDI-----------------GVP--------------------DE 378
Query: 420 FDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADL 479
+ ++ +I K K L ED +L + +++ THG+VGADL
Sbjct: 379 IGRLEVLRIHTKNMK----------LAEDVDL-------------ERVSKDTHGYVGADL 415
Query: 480 AALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLI 539
AAL EAA+ +R K I+ + E I E+L + V+ F AL PSALRE ++
Sbjct: 416 AALCTEAALQCIRE--KMDVIDLDDEEIDAEILNSMAVSNDHFQTALGNSNPSALRETVV 473
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
EVPNV W+DIGGLE+VK+EL+E V++P+++P+ F++ G++P KGVL YGPPG GKTLLAK
Sbjct: 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 533
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA 659
A+A E QANFI+I+GPE+L+ W GESE +REIF KARQ++P ++F DE+D+IA RG +
Sbjct: 534 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNS 593
Query: 660 EGEK--VTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 717
G+ DR++NQLLTEMDG+ V +I ATNRPDI+DPALLRPGR D+LI +P PD
Sbjct: 594 VGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD 653
Query: 718 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAK---- 773
E++R++IFK R P+A DVDL+ LA+ T+G++GADI +C+ + A+R + K
Sbjct: 654 EESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSGADITEICQRSCKYAIRENIEKDIEK 713
Query: 774 -----LSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVG 828
SPE +EE+ E+ + + FE ++K + SV+ + Y+ F ++ ++ G
Sbjct: 714 ERKRAESPEAMEEDEEEIAE---IKAGHFEESMKYARRSVSDADIRKYQAFAQTLQQSRG 770
Query: 829 -ESTGREPDYFTG 840
S R PD TG
Sbjct: 771 FGSEFRFPDAPTG 783
>gb|AAC02215.1| (AF044488) valosin-containing protein homolog [Trypanosoma brucei]
Length = 780
Score = 610 bits (1556), Expect = e-173
Identities = 348/828 (42%), Positives = 487/828 (58%), Gaps = 103/828 (12%)
Query: 9 QKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDR 68
++ ++ +A+ L D +V + K + + GD V+++G++ + I ++
Sbjct: 9 KQQKLNRLIADDLAED-DNSVVVLNAKRMDELSIFRGDTVKLKGKKNRSTICIAMSDENC 67
Query: 69 GLDIIRMDGYIRKNAGVTIGDFVTIR-RAEVKEAKKVVLAPAQKGVIVQIPGDIVKNNLL 127
I ++ R+N + +GD +T+ + V V + P + + GD+ + L
Sbjct: 68 PEGSIMVNKVTRRNIRILLGDLITVSSHSNVPYGNHVHVLPIDD-TVKNLTGDLFETFLK 126
Query: 128 G------RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPK 181
RPV GD+ + G ++F VV P
Sbjct: 127 PYFLEAYRPVKTGDLFICRGAMR-------------------------SVEFKVVEVDPG 161
Query: 182 GIVQITYNTEVEVLPQAVEVR-EEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFER 240
+ T V + EE++ +V Y+DIGG + + +IREMVELP++HPELF+
Sbjct: 162 DCCIVAPETVVHCEGDPIRREDEERLDDVGYDDIGGCRRQLVQIREMVELPIRHPELFKS 221
Query: 241 LGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKE 300
+GI+PP+G+L+YGPPG+GKTL+A+AVANE A+F INGPEIMSK GESE LR F E
Sbjct: 222 IGIKPPRGILMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEGNLRNAFVE 281
Query: 301 AEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDA 360
+E+NAPAIIFIDEID+IAPKRE+ GEVEKR+VSQLLTLMDGLK R +VIV+AATNRP+A
Sbjct: 282 SEKNAPAIIFIDEIDSIAPKREKAQGEVEKRIVSQLLTLMDGLKGRSQVIVMAATNRPNA 341
Query: 361 LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRF 420
+DPALRR GRFDREI++GVPD+ GR EIL+IHT K ++ D
Sbjct: 342 IDPALRRFGRFDREIDIGVPDEIGRLEILRIHT------------------KNMKLDPNV 383
Query: 421 DKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLA 480
D EKI A+ +HG+VGADLA
Sbjct: 384 DVEKI------------------------------------------AKDSHGYVGADLA 401
Query: 481 ALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIE 540
L EAAM +R K ++ + ETI EVL+ + VT F +AL + PSALRE +E
Sbjct: 402 QLCTEAAMQCVRE--KMAVVDWDDETIDAEVLDSMSVTNNHFLDALSKMNPSALRETQVE 459
Query: 541 VPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKA 600
PNV W D+GGL DVK+EL+E V++P+++P F++ GI+ PKGVL YGPPG GKTLLAKA
Sbjct: 460 TPNVTWSDVGGLLDVKRELQELVQYPVEFPWKFEKYGISAPKGVLFYGPPGCGKTLLAKA 519
Query: 601 VATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE 660
+ATE QANFI+I+GPE+L+ W GESE +R++F KAR A+P ++F DE+D++A +RG +
Sbjct: 520 IATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSVARSRGHSG 579
Query: 661 GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKA 720
+DR+INQ+LTEMDG+ V +I ATNRPD+LDPA++RPGR D+LI +P PD+ +
Sbjct: 580 DGGASDRVINQILTEMDGMNSKKNVFIIGATNRPDVLDPAVMRPGRLDQLIYIPLPDKAS 639
Query: 721 RFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAK-LSPEEL 779
R I K R PLA DVDL +LA T G++GAD+A +C+ A A+R ++AK + EE
Sbjct: 640 RVAILKASFRKSPLAPDVDLDQLAAATHGFSGADLAGICQRACKLAIRESIAKEIQLEEA 699
Query: 780 E-----EESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEES 822
E + +TR E A++ + SV+ + Y F S
Sbjct: 700 RANGVLNEDQDIDPVPQITRLHVEEAMRGARRSVSDADIRKYELFATS 747
>sp|P46462|TERA_RAT TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE) (15S
MG(2+)-ATPASE P97 SUBUNIT) (VALOSIN CONTAINING PROTEIN)
(VCP) [CONTAINS: VALOSIN] >gi|1083817|pir||A55190
transitional endoplasmic reticulum ATPase (EC 3.6.1.-)
[validated] - rat >gi|641973|gb|AAC52154.1| (U11760)
transitional endoplasmic reticulum ATPase [Rattus
norvegicus] >gi|1093322|prf||2103265A transitional
endoplasmic reticulum ATPase [Rattus norvegicus]
Length = 806
Score = 602 bits (1535), Expect = e-171
Identities = 358/842 (42%), Positives = 494/842 (58%), Gaps = 112/842 (13%)
Query: 14 KLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDRGLDII 73
+L V EA+ D +V + + + GD V ++G++ A+ D + I
Sbjct: 25 RLIVDEAINED--NSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 82
Query: 74 RMDGYIRKNAGVTIGDFVTIRRA-EVKEAKKVVLAPAQKGVIVQIPGDIVKNNLLG---- 128
RM+ +R N V +GD ++I+ +VK K++ + P + I G++ + L
Sbjct: 83 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDD-TVEGITGNLFEVYLKPYFLE 141
Query: 129 --RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQI 186
RP+ KGDI + G G ++F VV T P +
Sbjct: 142 AYRPIRKGDIFLVRG-------------------------GMRAVEFKVVETDPSPYCIV 176
Query: 187 TYNTEV--EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIE 244
+T + E P E EE + EV Y+DIGG ++ + +I+EMVELPL+HP LF+ +G++
Sbjct: 177 APDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK 236
Query: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304
PP+G+LLYGPPGTGKTL+A+AVANE A+F INGPEIMSK GESE LR+ F+EAE+N
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
APAIIFIDE+DAIAPKRE+ GEVE+R+VSQLLTLMDGLK R VIV+AATNRP+++DPA
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEK 424
LRR G RFD+E
Sbjct: 357 LRRFG-------------------------------------------------RFDRE- 366
Query: 425 IKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAR 484
+ + A EI I ++ L +V L+++A THG VGADLAAL
Sbjct: 367 ---VDIGIPDATGRLEILQIHTKNMKLADDVD-------LEQVANETHGHVGADLAALCS 416
Query: 485 EAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNV 544
EAA+ +R+ K I+ E ETI EV+ L VT DF AL PSALRE ++EVP V
Sbjct: 417 EAALQAIRK--KMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQV 474
Query: 545 HWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATE 604
W+DIGGLEDVK+EL+E V++P+++P F + G+TP KGVL YGPPG GKTLLAKA+A E
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534
Query: 605 SQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARG--TAEGE 662
QANFI+I+GPE+L+ W GESE +REIF KARQA+P ++F DE+D+IA ARG +G
Sbjct: 535 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 594
Query: 663 KVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARF 722
DR+INQ+LTEMDG+ V +I ATNRPDI+DPA+LRPGR D+LI +P PDEK+R
Sbjct: 595 GAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRV 654
Query: 723 EIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAV---------AK 773
I K + R P+A DVDL+ LA+ T G++GAD+ +C+ A A+R ++ +
Sbjct: 655 AILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQ 714
Query: 774 LSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGESTGR 833
+P +E E + + + R FE A++ + SV+ + Y F ++ ++ G + R
Sbjct: 715 TNPSAMEVEEDDPVPE--IRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFR 772
Query: 834 EP 835
P
Sbjct: 773 FP 774
>gi|6005942 valosin-containing protein [Homo sapiens]
>gi|11429568|ref|XP_005631.1| valosin-containing protein
[Homo sapiens] >gi|6094447|sp|P55072|TERA_HUMAN
TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE)
(15S MG(2+)-ATPASE P97 SUBUNIT) (VALOSIN CONTAINING
PROTEIN) (VCP) [CONTAINS: VALOSIN]
>gi|7435756|pir||T02243 probable transitional
endoplasmic reticulum ATPase - human
>gi|2984586|gb|AAC07984.1| (AC004472) TERA_HUMAN [Homo
sapiens] >gi|5410290|gb|AAD43016.1| (AF100752)
transitional endoplasmic reticulum ATPase [Homo sapiens]
Length = 806
Score = 602 bits (1535), Expect = e-171
Identities = 358/842 (42%), Positives = 494/842 (58%), Gaps = 112/842 (13%)
Query: 14 KLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDRGLDII 73
+L V EA+ D +V + + + GD V ++G++ A+ D + I
Sbjct: 25 RLIVDEAINED--NSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 82
Query: 74 RMDGYIRKNAGVTIGDFVTIRRA-EVKEAKKVVLAPAQKGVIVQIPGDIVKNNLLG---- 128
RM+ +R N V +GD ++I+ +VK K++ + P + I G++ + L
Sbjct: 83 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDD-TVEGITGNLFEVYLKPYFLE 141
Query: 129 --RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQI 186
RP+ KGDI + G G ++F VV T P +
Sbjct: 142 AYRPIRKGDIFLVRG-------------------------GMRAVEFKVVETDPSPYCIV 176
Query: 187 TYNTEV--EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIE 244
+T + E P E EE + EV Y+DIGG ++ + +I+EMVELPL+HP LF+ +G++
Sbjct: 177 APDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK 236
Query: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304
PP+G+LLYGPPGTGKTL+A+AVANE A+F INGPEIMSK GESE LR+ F+EAE+N
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
APAIIFIDE+DAIAPKRE+ GEVE+R+VSQLLTLMDGLK R VIV+AATNRP+++DPA
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEK 424
LRR G RFD+E
Sbjct: 357 LRRFG-------------------------------------------------RFDRE- 366
Query: 425 IKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAR 484
+ + A EI I ++ L +V L+++A THG VGADLAAL
Sbjct: 367 ---VDIGIPDATGRLEILQIHTKNMKLADDVD-------LEQVANETHGHVGADLAALCS 416
Query: 485 EAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNV 544
EAA+ +R+ K I+ E ETI EV+ L VT DF AL PSALRE ++EVP V
Sbjct: 417 EAALQAIRK--KMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQV 474
Query: 545 HWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATE 604
W+DIGGLEDVK+EL+E V++P+++P F + G+TP KGVL YGPPG GKTLLAKA+A E
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534
Query: 605 SQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARG--TAEGE 662
QANFI+I+GPE+L+ W GESE +REIF KARQA+P ++F DE+D+IA ARG +G
Sbjct: 535 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 594
Query: 663 KVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARF 722
DR+INQ+LTEMDG+ V +I ATNRPDI+DPA+LRPGR D+LI +P PDEK+R
Sbjct: 595 GAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRV 654
Query: 723 EIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAV---------AK 773
I K + R P+A DVDL+ LA+ T G++GAD+ +C+ A A+R ++ +
Sbjct: 655 AILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQ 714
Query: 774 LSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGESTGR 833
+P +E E + + + R FE A++ + SV+ + Y F ++ ++ G + R
Sbjct: 715 TNPSAMEVEEDDPVPE--IRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFR 772
Query: 834 EP 835
P
Sbjct: 773 FP 774
>pir||VPPG transitional endoplasmic reticulum ATPase - pig
>gi|225450|prf||1303334A valosin precursor [Sus scrofa
domestica]
Length = 806
Score = 601 bits (1534), Expect = e-171
Identities = 358/842 (42%), Positives = 494/842 (58%), Gaps = 112/842 (13%)
Query: 14 KLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDRGLDII 73
+L V EA+ D +V + + + GD V ++G++ A+ D + I
Sbjct: 25 RLIVDEAINED--NSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 82
Query: 74 RMDGYIRKNAGVTIGDFVTIRRA-EVKEAKKVVLAPAQKGVIVQIPGDIVKNNLLG---- 128
RM+ +R N V +GD ++I+ +VK K++ + P + I G++ + L
Sbjct: 83 RMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPIDD-TVEGITGNLFEVYLKPYFLE 141
Query: 129 --RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQI 186
RP+ KGDI + G G ++F VV T P +
Sbjct: 142 AYRPIRKGDIFLVRG-------------------------GMRAVEFKVVETDPSPYCIV 176
Query: 187 TYNTEV--EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIE 244
+T + E P E EE + EV Y+DIGG ++ + +I+EMVELPL+HP LF+ +G++
Sbjct: 177 APDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK 236
Query: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304
PP+G+LLYGPPGTGKTL+A+AVANE A+F INGPEIMSK GESE LR+ F+EAE+N
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
APAIIFIDE+DAIAPKRE+ GEVE+R+VSQLLTLMDGLK R VIV+AATNRP+++DPA
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEK 424
LRR G RFD+E
Sbjct: 357 LRRFG-------------------------------------------------RFDRE- 366
Query: 425 IKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAR 484
+ + A EI I ++ L +V L+++A THG VGADLAAL
Sbjct: 367 ---VDIGIPDATGRLEILQIHTKNMKLADDVD-------LEQVANETHGHVGADLAALCS 416
Query: 485 EAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNV 544
EAA+ +R+ K I+ E ETI EV+ L VT DF AL PSALRE ++EVP V
Sbjct: 417 EAALQAIRK--KMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQV 474
Query: 545 HWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATE 604
W+DIGGLEDVK+EL+E V++P+++P F + G+TP KGVL YGPPG GKTLLAKA+A E
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534
Query: 605 SQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARG--TAEGE 662
QANFI+I+GPE+L+ W GESE +REIF KARQA+P ++F DE+D+IA ARG +G
Sbjct: 535 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 594
Query: 663 KVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARF 722
DR+INQ+LTEMDG+ V +I ATNRPDI+DPA+LRPGR D+LI +P PDEK+R
Sbjct: 595 GAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRV 654
Query: 723 EIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAV---------AK 773
I K + R P+A DVDL+ LA+ T G++GAD+ +C+ A A+R ++ +
Sbjct: 655 AILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQ 714
Query: 774 LSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGESTGR 833
+P +E E + + + R FE A++ + SV+ + Y F ++ ++ G + R
Sbjct: 715 TNPSAMEVEEDDPVPE--IRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFR 772
Query: 834 EP 835
P
Sbjct: 773 FP 774
>gi|6678559 valosin containing protein; homolog of yeast cdc48 (S. cerevisiae)
[Mus musculus] >gi|400712|sp|Q01853|TERA_MOUSE
TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE)
(15S MG(2+)-ATPASE P97 SUBUNIT) (VALOSIN CONTAINING
PROTEIN) (VCP) [CONTAINS: VALOSIN]
>gi|284979|pir||S25197 transitional endoplasmic
reticulum ATPase - mouse >gi|55217|emb|CAA78412.1|
(Z14044) murine valosin-containing protein [Mus
musculus]
Length = 806
Score = 601 bits (1534), Expect = e-171
Identities = 357/842 (42%), Positives = 494/842 (58%), Gaps = 112/842 (13%)
Query: 14 KLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDRGLDII 73
+L V EA+ D +V + + + GD V ++G++ A+ D + I
Sbjct: 25 RLIVDEAINED--NSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 82
Query: 74 RMDGYIRKNAGVTIGDFVTIRRA-EVKEAKKVVLAPAQKGVIVQIPGDIVKNNLLG---- 128
RM+ +R N V +GD ++I+ +VK K++ + P + I G++ + L
Sbjct: 83 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDD-TVEGITGNLFEVYLKPYFLE 141
Query: 129 --RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQI 186
RP+ KGDI + G G ++F VV T P +
Sbjct: 142 AYRPIRKGDIFLVRG-------------------------GMRAVEFKVVETDPSPYCIV 176
Query: 187 TYNTEV--EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIE 244
+T + E P E EE + EV Y+D+GG ++ + +I+EMVELPL+HP LF+ +G++
Sbjct: 177 APDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVK 236
Query: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304
PP+G+LLYGPPGTGKTL+A+AVANE A+F INGPEIMSK GESE LR+ F+EAE+N
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
APAIIFIDE+DAIAPKRE+ GEVE+R+VSQLLTLMDGLK R VIV+AATNRP+++DPA
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEK 424
LRR G RFD+E
Sbjct: 357 LRRFG-------------------------------------------------RFDRE- 366
Query: 425 IKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAR 484
+ + A EI I ++ L +V L+++A THG VGADLAAL
Sbjct: 367 ---VDIGIPDATGRLEILQIHTKNMKLADDVD-------LEQVANETHGHVGADLAALCS 416
Query: 485 EAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNV 544
EAA+ +R+ K I+ E ETI EV+ L VT DF AL PSALRE ++EVP V
Sbjct: 417 EAALQAIRK--KMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQV 474
Query: 545 HWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATE 604
W+DIGGLEDVK+EL+E V++P+++P F + G+TP KGVL YGPPG GKTLLAKA+A E
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534
Query: 605 SQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARG--TAEGE 662
QANFI+I+GPE+L+ W GESE +REIF KARQA+P ++F DE+D+IA ARG +G
Sbjct: 535 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 594
Query: 663 KVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARF 722
DR+INQ+LTEMDG+ V +I ATNRPDI+DPA+LRPGR D+LI +P PDEK+R
Sbjct: 595 GAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRV 654
Query: 723 EIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAV---------AK 773
I K + R P+A DVDL+ LA+ T G++GAD+ +C+ A A+R ++ +
Sbjct: 655 AILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQ 714
Query: 774 LSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGESTGR 833
+P +E E + + + R FE A++ + SV+ + Y F ++ ++ G + R
Sbjct: 715 TNPSAMEVEEDDPVPE--IRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFR 772
Query: 834 EP 835
P
Sbjct: 773 FP 774
>pir||T48355 transitional endoplasmic reticulum ATPase - Arabidopsis thaliana
>gi|7378614|emb|CAB83290.1| (AL162751) transitional
endoplasmic reticulum ATPase [Arabidopsis thaliana]
Length = 843
Score = 601 bits (1532), Expect = e-170
Identities = 351/840 (41%), Positives = 503/840 (59%), Gaps = 108/840 (12%)
Query: 7 EPQKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPD 66
E +K +L V EA+ D +V + + GD + I+G++ + +
Sbjct: 55 ERKKSPNRLVVDEAINDD--NSVVSLHPTTMEKLQLFRGDTILIKGKKRKDTVCIALADE 112
Query: 67 DRGLDIIRMDGYIRKNAGVTIGDFVTIRRA-EVKEAKKVVLAPAQ---KGVIVQIPGDIV 122
IRM+ +R N V +GD +++ + +VK K+V + P +GV + +
Sbjct: 113 TCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYL 172
Query: 123 KNNLLG--RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIP 180
K L RPV KGD+ + G G ++F V+ T P
Sbjct: 173 KPYFLEAYRPVRKGDLFLVRG-------------------------GMRSVEFKVIETDP 207
Query: 181 KGIVQITYNTEVEVLPQAVEVR-EEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFE 239
+ +TE+ + V+ EE++ EV Y+D+GG+++ + +IRE+VELPL+HP+LF+
Sbjct: 208 AEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFK 267
Query: 240 RLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFK 299
+G++PPKG+LLYGPPG+GKTL+A+AVANE A+F INGPEIMSK GESE LR+ F+
Sbjct: 268 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFE 327
Query: 300 EAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPD 359
EAE+NAP+IIFIDEID+IAPKRE+ GEVE+R+VSQLLTLMDGLKSR VIV+ ATNRP+
Sbjct: 328 EAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 387
Query: 360 ALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDR 419
++DPALRR GRFDREI++ G+P D
Sbjct: 388 SIDPALRRFGRFDREIDI-----------------GVP--------------------DE 410
Query: 420 FDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADL 479
+ ++ +I K K L ED +L + +++ THG+VGADL
Sbjct: 411 IGRLEVLRIHTKNMK----------LAEDVDL-------------ERISKDTHGYVGADL 447
Query: 480 AALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLI 539
AAL EAA+ +R K I+ E ++I E+L + V+ F+ AL PSALRE ++
Sbjct: 448 AALCTEAALQCIRE--KMDVIDLEDDSIDAEILNSMAVSNEHFHTALGNSNPSALRETVV 505
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
EVPNV W+DIGGLE+VK+EL+E V++P+++P+ F++ G++P KGVL YGPPG GKTLLAK
Sbjct: 506 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 565
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA 659
A+A E QANFI+++GPE+L+ W GESE +REIF KARQ++P ++F DE+D+IA RG +
Sbjct: 566 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNS 625
Query: 660 EGEK--VTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 717
G+ DR++NQLLTEMDG+ V +I ATNRPDI+D ALLRPGR D+LI +P PD
Sbjct: 626 AGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPD 685
Query: 718 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAK---- 773
E +R IFK R P+A DVD+ LA+ T+G++GADI +C+ A A+R + K
Sbjct: 686 EDSRLNIFKACLRKSPVAKDVDVTALAKYTQGFSGADITEICQRACKYAIRENIEKDIEN 745
Query: 774 -----LSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVG 828
+PE +EE+ S I FE ++K + SV+ + Y+ F ++ ++ G
Sbjct: 746 ERRRSQNPEAMEEDMVDDEVSEI-RAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRG 804
>sp|P03974|TERA_PIG TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE) (15S
MG(2+)-ATPASE P97 SUBUNIT) (VALOSIN CONTAINING PROTEIN)
(VCP) [CONTAINS: VALOSIN (PEPTIDE VQY)]
>gi|164726|gb|AAA31142.1| (M30143) valosin-containing
protein [Sus scrofa]
Length = 806
Score = 600 bits (1531), Expect = e-170
Identities = 357/842 (42%), Positives = 494/842 (58%), Gaps = 112/842 (13%)
Query: 14 KLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDRGLDII 73
+L V EA+ D +V + + + GD V ++G++ A+ D + I
Sbjct: 25 RLIVDEAINED--NSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 82
Query: 74 RMDGYIRKNAGVTIGDFVTIRRA-EVKEAKKVVLAPAQKGVIVQIPGDIVKNNLLG---- 128
RM+ +R N V +GD ++I+ +VK K++ + P + I G++ + L
Sbjct: 83 RMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPIDD-TVEGITGNLFEVYLKPYFLE 141
Query: 129 --RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQI 186
RP+ KGDI + G G ++F VV T P +
Sbjct: 142 AYRPIRKGDIFLVRG-------------------------GMRAVEFKVVETDPSPYCIV 176
Query: 187 TYNTEV--EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIE 244
+T + E P E EE + EV Y+DIGG ++ + +I+EMVELPL+HP LF+ +G++
Sbjct: 177 APDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK 236
Query: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304
PP+G+LLYGPPGTGKTL+A+AVANE A+F INGPEIMSK GESE LR+ F+EAE+N
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
APAIIFIDE+DAIAPKRE+ GEVE+R+VSQLLTLMDGLK R VIV+AATNRP+++DPA
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEK 424
LRR G RFD+E
Sbjct: 357 LRRFG-------------------------------------------------RFDRE- 366
Query: 425 IKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAR 484
+ + A EI I ++ L +V L+++A THG VGADLAAL
Sbjct: 367 ---VDIGIPDATGRLEILQIHTKNMKLADDVD-------LEQVANETHGHVGADLAALCS 416
Query: 485 EAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNV 544
EAA+ +R+ K I+ E ETI EV+ L VT DF AL PSALRE ++EVP V
Sbjct: 417 EAALQAIRK--KMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQV 474
Query: 545 HWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATE 604
W+DIGGLEDVK+EL++ V++P+++P F + G+TP KGVL YGPPG GKTLLAKA+A E
Sbjct: 475 TWEDIGGLEDVKRELQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534
Query: 605 SQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARG--TAEGE 662
QANFI+I+GPE+L+ W GESE +REIF KARQA+P ++F DE+D+IA ARG +G
Sbjct: 535 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 594
Query: 663 KVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARF 722
DR+INQ+LTEMDG+ V +I ATNRPDI+DPA+LRPGR D+LI +P PDEK+R
Sbjct: 595 GAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRV 654
Query: 723 EIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAV---------AK 773
I K + R P+A DVDL+ LA+ T G++GAD+ +C+ A A+R ++ +
Sbjct: 655 AILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQ 714
Query: 774 LSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGESTGR 833
+P +E E + + + R FE A++ + SV+ + Y F ++ ++ G + R
Sbjct: 715 TNPSAMEVEEDDPVPE--IRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFR 772
Query: 834 EP 835
P
Sbjct: 773 FP 774
>sp|P54609|CC48_ARATH CELL DIVISION CYCLE PROTEIN 48 HOMOLOG >gi|2118115|pir||S60112
transitional endoplasmic reticulum ATPase - Arabidopsis
thaliana >gi|1019904|gb|AAC49120.1| (U37587) cell
division cycle protein [Arabidopsis thaliana]
>gi|6681343|gb|AAF23260.1|AC015985_18 (AC015985)
putative transitional endoplasmic reticulum ATPase
[Arabidopsis thaliana]
Length = 809
Score = 600 bits (1531), Expect = e-170
Identities = 349/841 (41%), Positives = 502/841 (59%), Gaps = 110/841 (13%)
Query: 7 EPQKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPD 66
E +K +L V EA+ D +V + + GD + I+G++ + +
Sbjct: 22 ERKKSPNRLVVDEAINDD--NSVVSLHPATMEKLQLFRGDTILIKGKKRKDTVCIALADE 79
Query: 67 DRGLDIIRMDGYIRKNAGVTIGDFVTIRRA-EVKEAKKVVLAPAQ---KGVIVQIPGDIV 122
IRM+ +R N V +GD +++ + +VK K+V + P +GV + +
Sbjct: 80 TCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYL 139
Query: 123 KNNLLG--RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIP 180
K L RPV KGD+ + G G ++F V+ T P
Sbjct: 140 KPYFLEAYRPVRKGDLFLVRG-------------------------GMRSVEFKVIETDP 174
Query: 181 KGIVQITYNTEVEVLPQAVEVR-EEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFE 239
+ +TE+ + V+ EE++ +V Y+D+GG+++ + +IRE+VELPL+HP+LF+
Sbjct: 175 AEYCVVAPDTEIFCEGEPVKREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFK 234
Query: 240 RLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFK 299
+G++PPKG+LLYGPPG+GKTL+A+AVANE A+F INGPEIMSK GESE LR+ F+
Sbjct: 235 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFE 294
Query: 300 EAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPD 359
EAE+NAP+IIFIDEID+IAPKRE+ GEVE+R+VSQLLTLMDGLKSR VIV+ ATNRP+
Sbjct: 295 EAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 354
Query: 360 ALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDR 419
++DPALRR GRFDREI++ G+P D
Sbjct: 355 SIDPALRRFGRFDREIDI-----------------GVP--------------------DE 377
Query: 420 FDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADL 479
+ ++ +I K K L ED +L + +++ THG+VGADL
Sbjct: 378 IGRLEVLRIHTKNMK----------LAEDVDL-------------ERISKDTHGYVGADL 414
Query: 480 AALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLI 539
AAL EAA+ +R K I+ E ++I E+L + VT F+ AL PSALRE ++
Sbjct: 415 AALCTEAALQCIRE--KMDVIDLEDDSIDAEILNSMAVTNEHFHTALGNSNPSALRETVV 472
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
EVPNV W+DIGGLE+VK+EL+E V++P+++P+ F++ G++P KGVL YGPPG GKTLLAK
Sbjct: 473 EVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 532
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARG-- 657
A+A E QANFI+++GPE+L+ W GESE +REIF KARQ++P ++F DE+D+IA RG
Sbjct: 533 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGG 592
Query: 658 -TAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAP 716
+G DR++NQLLTEMDG+ V +I ATNRPDI+D ALLRPGR D+LI +P P
Sbjct: 593 SGGDGGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLP 652
Query: 717 DEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAK--- 773
DE +R IFK R P+A DVD+ LA+ T+G++GADI +C+ A A+R + K
Sbjct: 653 DEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 712
Query: 774 ------LSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMV 827
+PE +EE+ + + FE ++K + SV+ + Y+ F ++ ++
Sbjct: 713 KEKRRSENPEAMEEDGVDEVSE--IKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSR 770
Query: 828 G 828
G
Sbjct: 771 G 771
>sp|P54774|CC48_SOYBN CELL DIVISION CYCLE PROTEIN 48 HOMOLOG (VALOSIN CONTAINING PROTEIN
HOMOLOG) (VCP) >gi|7435757|pir||T06409
valosin-containing protein - soybean
>gi|862480|gb|AAA80587.1| (U20213) valosin-containing
protein [Glycine max]
Length = 807
Score = 599 bits (1528), Expect = e-170
Identities = 354/842 (42%), Positives = 507/842 (60%), Gaps = 112/842 (13%)
Query: 7 EPQKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPD 66
E +K +L V EA+ D +V + + + GD + I+G++ I +
Sbjct: 23 ERKKSPNRLVVDEAVNDD--NSVVTMHPQTMEKLQLFRGDTILIKGKKRKDTICIALADE 80
Query: 67 DRGLDIIRMDGYIRKNAGVTIGDFVTIRRA-EVKEAKKVVLAPAQ---KGVIVQIPGDIV 122
+ IRM+ +R N V +GD V++ + +VK K+V + P +GV + +
Sbjct: 81 NCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFL 140
Query: 123 KNNLLG--RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIP 180
K L RPV KGD+ + G G ++F VV T P
Sbjct: 141 KPYFLEAYRPVRKGDLFLVRG-------------------------GMRSVEFKVVETDP 175
Query: 181 KGIVQITYNTEVEVLPQAVEVR-EEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFE 239
+ +TE+ + ++ EE++ EV Y+D+GG+++ + +IRE+VELPL+HP+LF+
Sbjct: 176 GEYCVVAPDTEIFCEGEPLKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFK 235
Query: 240 RLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFK 299
+G++PPKG+LLYGPPG+GKTL+A+AVANE A+F INGPEIMSK GESE LR+ F+
Sbjct: 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFE 295
Query: 300 EAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPD 359
EAE+NAP+IIFIDEID+IAPKRE+ GEVE+R+VSQLLTLMDGLKSR VIVI ATNRP+
Sbjct: 296 EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355
Query: 360 ALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDR 419
++DPALRR G R
Sbjct: 356 SIDPALRRFG-------------------------------------------------R 366
Query: 420 FDKEKIKKIIEKVSKAKSEEEIKDILR-EDRNLYIEVRTKLIDKL-LDELAEVTHGFVGA 477
FD+E + ++V + ++LR +N+ KL D + L+ +A+ THG+VGA
Sbjct: 367 FDREIDIGVPDEVGRL-------EVLRIHTKNM------KLSDDVDLERIAKDTHGYVGA 413
Query: 478 DLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREV 537
DLAAL EAA+ +R K I+ E ETI EVL + VT F AL PSALRE
Sbjct: 414 DLAALCTEAALQCIRE--KMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRET 471
Query: 538 LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLL 597
++EVPNV W+DIGGLE+VK+EL+E V++P+++P+ F++ G++P KGVL YGPPG GKTLL
Sbjct: 472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 531
Query: 598 AKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARG 657
AKA+A E QANFI+++GPE+L+ W GESE +REIF KARQ++P ++F DE+D+IA RG
Sbjct: 532 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 591
Query: 658 TAEGEK--VTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPA 715
++ G+ DR++NQLLTEMDG+ V +I ATNRPDI+DPALLRPGR D+LI +P
Sbjct: 592 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 651
Query: 716 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAK-- 773
PDE +R +IFK R P+A +VDL+ LAR T+G++GADI +C+ A A+R + K
Sbjct: 652 PDEDSRHQIFKACLRKSPIAKNVDLRALARHTQGFSGADITEICQRACKYAIRENIEKDI 711
Query: 774 -------LSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRM 826
+PE ++E++ + + FE ++K + SV+ + Y+ F ++ ++
Sbjct: 712 ERERKSRENPEAMDEDTVDD-EVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQS 770
Query: 827 VG 828
G
Sbjct: 771 RG 772
>sp|Q96372|CC48_CAPAN CELL DIVISION CYCLE PROTEIN 48 HOMOLOG >gi|1669660|emb|CAA70565.1|
(Y09396) protein of AAA family [Capsicum annuum]
Length = 805
Score = 593 bits (1512), Expect = e-168
Identities = 346/844 (40%), Positives = 502/844 (58%), Gaps = 112/844 (13%)
Query: 7 EPQKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPD 66
E +K +L V EA+ D +V + + GD + I+G++ +V +
Sbjct: 23 ERKKAANRLVVDEAVNDD--NSVVALHPATMEKLQLFRGDTILIKGKKRKDTVVIALADE 80
Query: 67 DRGLDIIRMDGYIRKNAGVTIGDFVTIRRA-EVKEAKKVVLAPAQKGVIVQIPGDIVKNN 125
IRM+ +R N V +GD V++ + +VK K+V + P I + GD+
Sbjct: 81 TCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDD-TIEGLTGDLFDAF 139
Query: 126 LLG------RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTI 179
L RP+ KGD + G G ++F V+ T
Sbjct: 140 LKPYFLEAYRPLRKGDNFLVRG-------------------------GMRSVEFKVIETD 174
Query: 180 PKGIVQITYNTEVEVLPQAVEVR-EEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELF 238
P + +TE+ + V+ EE++ EV Y+D+GG+++ + +IRE+VELPL+HP+LF
Sbjct: 175 PGEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLF 234
Query: 239 ERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIF 298
+ +G++PPKG+LLYGPPG+GKTL+A+AVANE A+F INGPEIMSK GESE LR+ F
Sbjct: 235 KSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAF 294
Query: 299 KEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRP 358
+EAE+NAP+IIFIDEID+IAPKRE+ GEVE+R+VSQLLTLMDGLKSR VIV+ ATNRP
Sbjct: 295 EEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRP 354
Query: 359 DALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDD 418
+++DPALRR G
Sbjct: 355 NSIDPALRRFG------------------------------------------------- 365
Query: 419 RFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGAD 478
RFD+E + ++V + E+ I ++ L EV L+ +++ THG+VGAD
Sbjct: 366 RFDREIDIGVPDEVGRL----EVLGIHTKNMKLAEEVD-------LERISKDTHGYVGAD 414
Query: 479 LAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVL 538
LAAL EAA+ +R K ++ E +TI EVL + VT F AL PSALRE +
Sbjct: 415 LAALCTEAALQCIRE--KMDVLDLEDDTIDAEVLNSMAVTNEHFQTALGTSNPSALRETV 472
Query: 539 IEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLA 598
+EVPNV W+DIGGLE+VK+EL+E V++P++ P+ F++ G++P KGVL YGPPG GKTLLA
Sbjct: 473 VEVPNVSWEDIGGLENVKRELQETVQYPVEPPEKFEKFGMSPSKGVLFYGPPGCGKTLLA 532
Query: 599 KAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGT 658
KA+A E QANFI+++GPE+L+ W GESE +REIF KARQ++P ++F DE+D+IA RG+
Sbjct: 533 KAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 592
Query: 659 AEGEK--VTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAP 716
+ G+ DR++NQLLTEMDG+ V +I ATNRPDI+DPALLRPGR D+LI +P P
Sbjct: 593 SSGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 652
Query: 717 DEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAK--- 773
DE +R +IFK R PL+ D+DL+ LA+ T+G++GAD+ +C+ A A+R + K
Sbjct: 653 DEDSRHQIFKACLRKSPLSKDIDLRALAKHTQGFSGADVTEICQRACKYAIRENIEKDIE 712
Query: 774 ------LSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMV 827
+P+ ++E+ ++ + + FE ++K + SV+ + Y+ F ++ ++
Sbjct: 713 REKRRQENPDSMDEDVDEVPE---IKPAHFEESMKYARRSVSDADIRKYQAFAQTLQQSR 769
Query: 828 GEST 831
G T
Sbjct: 770 GFGT 773
>sp|P23787|TERA_XENLA TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE) (15S
MG(2+)-ATPASE P97 SUBUNIT) >gi|104084|pir||S19738
transitional endoplasmic reticulum ATPase (EC 3.6.1.-)
97K chain - African clawed frog
>gi|64966|emb|CAA38146.1| (X54240) p97 subunit of 15S
Mg(2+)- ATPase [Xenopus laevis]
Length = 805
Score = 591 bits (1508), Expect = e-168
Identities = 353/842 (41%), Positives = 490/842 (57%), Gaps = 112/842 (13%)
Query: 14 KLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDRGLDII 73
+L V E++ D +V + + + GD V ++G++ A+ D + I
Sbjct: 25 RLIVDESINED--NSVVSLSQAKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 82
Query: 74 RMDGYIRKNAGVTIGDFVTIRRA-EVKEAKKVVLAPAQKGVIVQIPGDIVKNNLLG---- 128
RM+ +R N V +GD ++I+ +VK K+V + P + I G++ + L
Sbjct: 83 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRVHVLPIDD-TVEGITGNLFEVYLKPYFLE 141
Query: 129 --RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQI 186
RP+ KGDI + G G ++F VV T P +
Sbjct: 142 AYRPIRKGDIFLVRG-------------------------GMRAVEFKVVETDPSPYCIV 176
Query: 187 TYNTEV--EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIE 244
+T + E P E EE + EV Y+DIGG ++ + +I+EMVELPL+HP LF+ +G++
Sbjct: 177 APDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK 236
Query: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304
PP+G+LLYGPPGTGKTL+A+AVANE A+F INGPEIMSK GESE LR+ F+EAE+N
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
APAIIFIDE+DAIAPKRE+ GEVE+R+VSQLLTLMDGLK R VIV+AATNRP+++DPA
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEK 424
L + RFD+E
Sbjct: 357 -------------------------------------------------LRRFGRFDREV 367
Query: 425 IKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAR 484
I + + EI I ++ L +V L+++A THG VGADLAAL
Sbjct: 368 DIGIPDSTGRL----EILQIHTKNMKLSDDVD-------LEQVANETHGHVGADLAALCS 416
Query: 485 EAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNV 544
EAA+ +R+ K I+ E ETI EV+ L VT DF L PSALRE ++EVP V
Sbjct: 417 EAALQAIRK--KMDLIDLEDETIDAEVMNSLAVTMDDFRWGLSQSNPSALRETVVEVPQV 474
Query: 545 HWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATE 604
W+DIGGLEDVK+EL+E V++P+++P F + G+TP KGVL YGPPG GKTLLAKA+A E
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534
Query: 605 SQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARG--TAEGE 662
QANFI+I+GPE+L+ W GESE +REIF KARQA+P ++F DE+D+IA ARG +G
Sbjct: 535 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 594
Query: 663 KVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARF 722
DR+INQ+LTEMDG+ V +I ATNRPDI+DPA+LRPGR D+LI +P PDEK+R
Sbjct: 595 GAADRVINQILTEMDGMSIKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRM 654
Query: 723 EIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAV---------AK 773
I K + R P+A DVD+ LA+ T G++GAD+ +C+ A A+R ++ +
Sbjct: 655 AILKANLRKSPVAKDVDVDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERDRQ 714
Query: 774 LSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGESTGR 833
+P +E E + + + R FE A++ + SV+ + Y F ++ ++ G + R
Sbjct: 715 TNPSAMEVEEDDPVPE--IRRDHFEEAMRLARRSVSDNDIRKYEMFAQTLQQSRGFGSFR 772
Query: 834 EP 835
P
Sbjct: 773 FP 774
>gb|AAF74998.1| (AF199367) cdc48-like protein [Entamoeba histolytica]
Length = 772
Score = 571 bits (1455), Expect = e-161
Identities = 337/846 (39%), Positives = 490/846 (57%), Gaps = 109/846 (12%)
Query: 3 LGRSEPQKDEIKLR--VAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIV 60
+ EP+K +K + E K D IV + + + GD + I+G+R + +
Sbjct: 11 MNEEEPKKIIVKKHRLIVEESKED-DMSIVYMNPQRMEELNFFEGDSILIKGKRRKSTVC 69
Query: 61 ANPHPDDRGLDIIRMDGYIRKNAGVTIGDFVTIRRAE-VKEAKKVVLAPAQKGVIVQIPG 119
+ ++IR+ R N V +GD V + + V A K+ + P + I G
Sbjct: 70 IVMAEEGLTENMIRLHRMTRYNLRVKLGDVVGVETPQNVPYAIKIHVLPIDD-TVEGITG 128
Query: 120 DIVKNNL------LGRPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKF 173
D+ + + + RP+ K D + G G ++F
Sbjct: 129 DLFETYIRPYFSDVFRPIKKDDHFLCHG-------------------------GMRTVEF 163
Query: 174 MVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPE-VTYEDIGGLKEAIEKIREMVELPL 232
VV+ P + +T + + ++ +E+ P+ + Y+DIGG + + +IREMVELPL
Sbjct: 164 KVVDIDPSPYALVVNDTIIHCEGEPIKREDEERPDDLGYDDIGGCRRQLGQIREMVELPL 223
Query: 233 KHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEE 292
+HP+LF+ +GI+PPKGVLLYGPPG GKT++A+AVANE + I INGPEIMSK GESE
Sbjct: 224 RHPQLFQAIGIKPPKGVLLYGPPGCGKTMIARAVANETGVFLILINGPEIMSKMAGESEG 283
Query: 293 RLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVI 352
LRE F EAE+NAPA+IFIDEID+IAPKR++ GEVE+RVV+QLLTLMDG+KSR VIV+
Sbjct: 284 NLREAFAEAEKNAPALIFIDEIDSIAPKRDKAQGEVERRVVAQLLTLMDGMKSRSNVIVM 343
Query: 353 AATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALK 412
AATNRP+A+D ALR RF R F++E
Sbjct: 344 AATNRPNAIDSALR---RFGR----------------------------FDREI------ 366
Query: 413 ELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTH 472
++ D + +I I K K + ++ I +E TH
Sbjct: 367 DIGVPDETGRLEILNIHTKKMKIADDVDLLQIAKE-----------------------TH 403
Query: 473 GFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPS 532
G+VGADLA L EAAM+ +R + ++ EA++IP EVL +KVT F +K PS
Sbjct: 404 GYVGADLAQLCTEAAMLCIRENMAH--VDVEADSIPVEVLNGMKVTMEHFRNVMKTCTPS 461
Query: 533 ALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGT 592
ALRE ++E+PNV W+DIGGLEDVK+EL+E V++P+++P F + G+ P KGVL +GPPG
Sbjct: 462 ALRETVVEIPNVKWEDIGGLEDVKRELKEVVQYPVEFPDKFTKFGMEPSKGVLFFGPPGC 521
Query: 593 GKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAI 652
GKTLLAKAVA++ +ANFI+I+GPE+L+ W GESE +R++F KARQA+P ++F DE+D+I
Sbjct: 522 GKTLLAKAVASQCKANFISIKGPELLTMWYGESEANVRDVFDKARQAAPCVLFFDELDSI 581
Query: 653 APARGTAEGEK--VTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRL 710
ARG G+ DRI+NQLLTEMDG+ + V +I ATNRPDILDPALLRPGR D+L
Sbjct: 582 GRARGGGAGDAGGSADRILNQLLTEMDGVGKKKQVFIIGATNRPDILDPALLRPGRLDQL 641
Query: 711 ILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRA 770
+ +P PD+ +R I + R P+A DVDL +A TE ++GAD+A + + A A+R
Sbjct: 642 LFIPLPDKASRISILQAKLRNSPVAPDVDLDWIAEHTENFSGADLAEIVQRACKEAIRDT 701
Query: 771 VAKLSPEELEEESEKFLKSL------IVTRKDFEVALKKVKPSVTKYMMEYYRQFEES-- 822
+ +L+ E E+ ++ + + ++ K F AL+ + SV+ ++ Y + E+
Sbjct: 702 INELAVAEAEKAAQPEDQKMEIEVKPMIKVKHFNAALRDARRSVSDIEIQRYNMYAETLL 761
Query: 823 RKRMVG 828
++R +G
Sbjct: 762 QRRSIG 767
>sp|P54812|TER2_CAEEL TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 2 (P97/CDC48
HOMOLOG 2) >gi|7497271|pir||T19879 hypothetical protein
C41C4.8 - Caenorhabditis elegans
>gi|3874892|emb|CAA88105.1| (Z48045) contains similarity
to Pfam domain: PF00004 (ATPases associated with various
cellular activities (AAA)), Score=656.9,
E-value=3.5e-194, N=2~cDNA EST EMBL:M89239 comes from
this gene; cDNA EST yk9e6.3 comes from this gene~cDNA
EST yk9e6.5 comes> >gi|3875715|emb|CAA88314.1| (Z48334)
contains similarity to Pfam domain: PF00004 (ATPases
associated with various cellular activities (AAA)),
Score=656.9, E-value=3.5e-194, N=2~cDNA EST EMBL:M89239
comes from this gene; cDNA EST yk9e6.3 comes from this
gene~cDNA EST yk9e6.5 comes>
Length = 810
Score = 568 bits (1447), Expect = e-160
Identities = 338/812 (41%), Positives = 480/812 (58%), Gaps = 113/812 (13%)
Query: 40 IGVEPGDIVEIEGE--RITAAIVANPHPDDRGLDIIRMDGYIRKNAGVTIGDFVTIRRAE 97
+G+ GD V ++G+ R T +IV N D+ D I+M+ +R N +GD V+I A+
Sbjct: 55 LGLFRGDSVILKGKKRRETVSIVLNA--DNCPNDKIKMNKVVRNNLRSRLGDVVSISSAQ 112
Query: 98 VKEAKKVVLAPAQKGVIVQIPGDIVKNNLLG------RPVVKGDIIVASGRSEMYYSSGT 151
++ K+V + P I + G++ L RPV KGDI
Sbjct: 113 LEYGKRVHVLPIDD-TIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFT------------- 158
Query: 152 PFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQITYNTEV--EVLPQAVEVREEKIPEV 209
+ ++F VV T P + +T + E P E EE + EV
Sbjct: 159 ------------VQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEV 206
Query: 210 TYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 269
Y+D+GG+++ + +I+EMVELPL+HP+LF+ +G++PP+G+LL+GPPGTGKTL+A+AVANE
Sbjct: 207 GYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLFGPPGTGKTLIARAVANE 266
Query: 270 ANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVE 329
A+F INGPEIMSK GESE LR+ F E E+N+PAI+FIDEIDAIAPKRE+ GEVE
Sbjct: 267 TGAFFFLINGPEIMSKMSGESESNLRKAFAECEKNSPAILFIDEIDAIAPKREKAHGEVE 326
Query: 330 KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEIL 389
KR+VSQLLTLMDGLK+R V+VIAATNRP+++D A
Sbjct: 327 KRIVSQLLTLMDGLKTRAHVVVIAATNRPNSIDGA------------------------- 361
Query: 390 QIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDR 449
L + RFD+E I + V + EI I ++
Sbjct: 362 ------------------------LRRFGRFDREIDIGIPDAVGRL----EILRIHTKNM 393
Query: 450 NLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPR 509
L +V L+++A HGFVGADLA+L EAA+ +R K I+ E +TI
Sbjct: 394 KLGEDVD-------LEQVANECHGFVGADLASLCSEAAIQQIRE--KMELIDLEDDTIDA 444
Query: 510 EVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKY 569
EVL L VT +F A+ PSALRE ++E PN W DIGGL++VK+EL+E V++P+++
Sbjct: 445 EVLNSLAVTMENFRFAMGKSSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEH 504
Query: 570 PKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRI 629
P+ + + G+ P +GVL YGPPG GKTLLAKA+A E QANFI+I+GPE+L+ W GESE +
Sbjct: 505 PEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANV 564
Query: 630 REIFRKARQASPAIIFIDEIDAIAPARGTAEGEK--VTDRIINQLLTEMDGLVENSGVVV 687
R++F KAR A+P ++F DE+D+IA ARG + G+ DR+INQ+LTEMDG+ V +
Sbjct: 565 RDVFDKARAAAPCVLFFDELDSIAKARGGSVGDAGGAADRVINQVLTEMDGMNAKKNVFI 624
Query: 688 IAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRT 747
I ATNRPDI+DPA+LRPGR D+LI +P PDE +R +IFK R PL+ D+DL LA+ T
Sbjct: 625 IGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNT 684
Query: 748 EGYTGADIAAVCREAAMNALRRAVAKLSPEELEEE-----SEKFLKSLI------VTRKD 796
G++GAD+ +C+ A A+R ++ + +E E + E+ ++ + +TR
Sbjct: 685 VGFSGADLTEICQRACKLAIRESIEREIRQEKERQDRSARGEELMEDELADPVPEITRAH 744
Query: 797 FEVALKKVKPSVTKYMMEYYRQFEESRKRMVG 828
FE A+K + SVT + Y F ++ ++ G
Sbjct: 745 FEEAMKFARRSVTDNDIRKYEMFAQTLQQSRG 776
>gi|10946660 spermatogenesis associated factor [Mus musculus]
>gi|4105619|gb|AAD02481.1| (AF049099) SPAF [Mus
musculus]
Length = 892
Score = 557 bits (1419), Expect = e-157
Identities = 295/618 (47%), Positives = 403/618 (64%), Gaps = 84/618 (13%)
Query: 208 EVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVA 267
+VTY+ IGGL ++ IRE++ELPLK PELF+ GI P+G+LLYGPPGTGKT++A+AVA
Sbjct: 348 KVTYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVA 407
Query: 268 NEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGE 327
NE AY INGPEI+SK+YGE+E RLR+IF EA P+IIFIDE+DA+ PKRE E
Sbjct: 408 NEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSE 467
Query: 328 VEKRVVSQLLTLMDGLKSRG---KVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQG 384
VEKRVV+ LLTLMDG+ S G +V+V+ ATNRP ALD ALRRPGRFD+EIE+G+P+ Q
Sbjct: 468 VEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIGIPNAQ- 526
Query: 385 RKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDI 444
DR D ++K++ +V ++ E+
Sbjct: 527 ---------------------------------DRLDI--LQKLLRRVPHLLTKAELL-- 549
Query: 445 LREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEA 504
LA HG+VGADL AL EA + LRR++++ P++
Sbjct: 550 ---------------------RLANNAHGYVGADLKALCNEAGLHALRRVLRKQPNLPDS 588
Query: 505 ETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVE 564
+ V +K+T DF + + + PSA+REV I+VPNV W DIGGLE++K +L++AVE
Sbjct: 589 K-----VAGMVKITLNDFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVE 643
Query: 565 WPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGE 624
WPLK+PK+F R+GI PPKGVLLYGPPG KT++AKA+A ES NF+AI+GPE+++K+VGE
Sbjct: 644 WPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGE 703
Query: 625 SEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGE-KVTDRIINQLLTEMDGLVENS 683
SE+ +REIFRKAR +P+IIF DE+DA+A RG++ G V DR++ QLLTEMDG+ +
Sbjct: 704 SERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAGNVADRVLAQLLTEMDGIEQLK 763
Query: 684 GVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKEL 743
V V+AATNRPD +D AL+RPGR DR+I VP PD R EI + MP++++VDL EL
Sbjct: 764 NVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPISNEVDLDEL 823
Query: 744 ARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKK 803
+T+ Y+GA+I AVC+EAA+ AL E+ +K+ + ++ F AL
Sbjct: 824 VLQTDTYSGAEIIAVCKEAALLAL----------------EENIKADCIMKRHFTEALSI 867
Query: 804 VKPSVTKYMMEYYRQFEE 821
V P + + + +Y ++E
Sbjct: 868 VTPRIPESLRRFYEDYQE 885
Score = 226 bits (570), Expect = 8e-58
Identities = 121/267 (45%), Positives = 172/267 (64%), Gaps = 12/267 (4%)
Query: 182 GIVQITYNTEVE----VLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPEL 237
G+V+IT N ++ + P A+ +P V++ DIGGL+ K+++ VE PLKHP+
Sbjct: 592 GMVKITLNDFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPKS 651
Query: 238 FERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREI 297
F R+GI+PPKGVLLYGPPG KT++AKA+ANE+ F+AI GPE+M+KY GESE +REI
Sbjct: 652 FNRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREI 711
Query: 298 FKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAAT 355
F++A AP+IIF DE+DA+A +R G V RV++QLLT MDG++ V V+AAT
Sbjct: 712 FRKARAVAPSIIFFDELDALAVERGSSSGAGNVADRVLAQLLTEMDGIEQLKNVTVLAAT 771
Query: 356 NRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELE 415
NRPD +D AL RPGR DR I V +PD R+EIL + MPI + + + ++
Sbjct: 772 NRPDRIDKALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPISNEVDLDELVL------ 825
Query: 416 KDDRFDKEKIKKIIEKVSKAKSEEEIK 442
+ D + +I + ++ + EE IK
Sbjct: 826 QTDTYSGAEIIAVCKEAALLALEENIK 852
>gb|AAD27852.1|AF132553_1 (AF132553) BcDNA.GM02885 [Drosophila melanogaster]
>gi|7303816|gb|AAF58863.1| (AE003831) TER94 gene product
[alt 2] [Drosophila melanogaster]
Length = 801
Score = 556 bits (1417), Expect = e-157
Identities = 338/842 (40%), Positives = 487/842 (57%), Gaps = 114/842 (13%)
Query: 9 QKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERI--TAAIVANPH-- 64
+KD + E + D +V + + + GD V ++G+R T IV +
Sbjct: 16 RKDRPNRLIVEEAQND-DNSVVSLSQAKMDELQLFRGDTVILKGKRRKETVCIVLSDDTC 74
Query: 65 PDDRGLDIIRMDGYIRKNAGVTIGDFVTIRRA-EVKEAKKVVLAP---AQKGVIVQIPGD 120
PD++ IRM+ +R N V + D V+++ +VK K+V + P + +GV +
Sbjct: 75 PDEK----IRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRILPIDESTEGVTGNLFEI 130
Query: 121 IVKNNLLG--RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNT 178
+K L RP+ GD + + ++F VV T
Sbjct: 131 YLKPYFLEAYRPIHMGDNFI-------------------------VRAAMRPIEFKVVLT 165
Query: 179 IPKGIVQITYNTEV--EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPE 236
P+ + T + + P E EE + V Y+DIGG ++ + +I+EMVELPL+HP
Sbjct: 166 DPEPYCIVAPETVIFCDGDPIKREEEEESLNAVGYDDIGGCRKQLAQIKEMVELPLRHPS 225
Query: 237 LFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLRE 296
LF+ +G++PP+G+L+YGPPGTGKTL+A+AVANE A+F INGPEIMSK GESE LR+
Sbjct: 226 LFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 285
Query: 297 IFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATN 356
F+EAE+N+PAIIFIDEIDAIAPKR++ GEVE+R+VSQLLTLMDG+K +IV+AATN
Sbjct: 286 AFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATN 345
Query: 357 RPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEK 416
RP+++DPALRR G
Sbjct: 346 RPNSIDPALRRFG----------------------------------------------- 358
Query: 417 DDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVG 476
RFD+E I + A E+ I ++ L+ +V L+++A +HG VG
Sbjct: 359 --RFDRE----IDIGIPDATGRLEVLRIHTKNMKLHDDVD-------LEQIAAESHGHVG 405
Query: 477 ADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALRE 536
ADLA+L EAA+ +R K I+ E + I EVL L VT +F A+ PSALRE
Sbjct: 406 ADLASLCSEAALQQIRE--KMDLIDLEDDKIDAEVLASLAVTMENFRYAMTKSSPSALRE 463
Query: 537 VLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTL 596
++EVPN W DIGGLE VK+EL+E V++P+++P F + G+ P +GVL YGPPG GKTL
Sbjct: 464 TVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTL 523
Query: 597 LAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR 656
LAKA+A E QANFI+++GPE+L+ W GESE +R+IF KAR A+P ++F DE+D+IA AR
Sbjct: 524 LAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCVLFFDELDSIAKAR 583
Query: 657 GTAEGEK--VTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVP 714
G G+ DR+INQ+LTEMDG+ V +I ATNRPDI+DPA+LRPGR D+LI +P
Sbjct: 584 GGNVGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 643
Query: 715 APDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAV-AK 773
PD+K+R I K + R PLA +VDL +A+ T+G++GAD+ +C+ A A+R+A+ A+
Sbjct: 644 LPDDKSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAE 703
Query: 774 LSPEELEEESEKFLKSL-------IVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRM 826
+ E+ E++ + +T FE A+K + SV+ + Y F ++ ++
Sbjct: 704 IRREKERAENQNSAMDMDEDDPVPEITSAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQS 763
Query: 827 VG 828
G
Sbjct: 764 RG 765
>gi|6320077 microsomal ATPase; Cdc48p [Saccharomyces cerevisiae]
>gi|1705679|sp|P25694|CC48_YEAST CELL DIVISION CONTROL
PROTEIN 48 >gi|2118116|pir||S67669 transitional
endoplasmic reticulum ATPase [validated] - yeast
(Saccharomyces cerevisiae) >gi|1431189|emb|CAA98694.1|
(Z74174) ORF YDL126c [Saccharomyces cerevisiae]
>gi|1449400|emb|CAA40276.1| (X56956) CDC48p
[Saccharomyces cerevisiae]
Length = 835
Score = 552 bits (1407), Expect = e-156
Identities = 339/853 (39%), Positives = 487/853 (56%), Gaps = 124/853 (14%)
Query: 9 QKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDR 68
+K + L V +A+ D ++ + + + GD V ++G++ ++ D+
Sbjct: 30 KKKDNMLLVDDAINDD--NSVIAINSNTMDKLELFRGDTVLVKGKKRKDTVLIVLIDDEL 87
Query: 69 GLDIIRMDGYIRKNAGVTIGDFVTIRRA-EVKEAKKVVLAPAQKGVIVQIPGDIVKNNLL 127
R++ +R N + +GD VTI ++K A ++ + P I I G++ L
Sbjct: 88 EDGACRINRVVRNNLRIRLGDLVTIHPCPDIKYATRISVLPIAD-TIEGITGNLFDVFLK 146
Query: 128 G------RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPK 181
RPV KGD V G G +++F VV+ P+
Sbjct: 147 PYFVEAYRPVRKGDHFVVRG-------------------------GMRQVEFKVVDVEPE 181
Query: 182 GIVQITYNTEV--EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFE 239
+ +T + E P E E + EV Y+DIGG ++ + +IREMVELPL+HP+LF+
Sbjct: 182 EYAVVAQDTIIHWEGEPINREDEENNMNEVGYDDIGGCRKQMAQIREMVELPLRHPQLFK 241
Query: 240 RLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFK 299
+GI+PP+GVL+YGPPGTGKTL+A+AVANE A+F INGPE+MSK GESE LR+ F+
Sbjct: 242 AIGIKPPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFE 301
Query: 300 EAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPD 359
EAE+NAPAIIFIDEID+IAPKR++ GEVE+RVVSQLLTLMDG+K+R V+VIAATNRP+
Sbjct: 302 EAEKNAPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPN 361
Query: 360 ALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDR 419
+ I+P L + R
Sbjct: 362 S-------------------------------------IDP------------ALRRFGR 372
Query: 420 FDKEKIKKIIEKVSKAKSEEEIKDILR-EDRNLYIEVRTKLIDKL-LDELAEVTHGFVGA 477
FD+E I + + ++LR +N+ KL D + L+ LA THG+VGA
Sbjct: 373 FDREVDIGIPDATGRL-------EVLRIHTKNM------KLADDVDLEALAAETHGYVGA 419
Query: 478 DLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREV 537
D+A+L EAAM +R K I+ + + I EVL+ L VT +F AL PSALRE
Sbjct: 420 DIASLCSEAAMQQIRE--KMDLIDLDEDEIDAEVLDSLGVTMDNFRFALGNSNPSALRET 477
Query: 538 LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLL 597
++E NV WDD+GGL+++K+EL+E VE+P+ +P + + G++P KGVL YGPPGTGKTLL
Sbjct: 478 VVESVNVTWDDVGGLDEIKEELKETVEYPVLHPDQYTKFGLSPSKGVLFYGPPGTGKTLL 537
Query: 598 AKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARG 657
AKAVATE ANFI+++GPE+LS W GESE IR+IF KAR A+P ++F+DE+D+IA ARG
Sbjct: 538 AKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARG 597
Query: 658 TAEGEK--VTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPA 715
+ G+ +DR++NQLLTEMDG+ V VI ATNRPD +DPA+LRPGR D+LI VP
Sbjct: 598 GSLGDAGGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPAILRPGRLDQLIYVPL 657
Query: 716 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAV---- 771
PDE AR I R PL ++L +A+ T+G++GAD+ + + AA A++ ++
Sbjct: 658 PDENARLSILNAQLRKTPLEPGLELTAIAKATQGFSGADLLYIVQRAAKYAIKDSIEAHR 717
Query: 772 -------AKLSPEELE--------EESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYY 816
K+ E++E E+ + +T++ F A+K K SV+ + Y
Sbjct: 718 QHEAEKEVKVEGEDVEMTDEGAKAEQEPEVDPVPYITKEHFAEAMKTAKRSVSDAELRRY 777
Query: 817 RQFEESRKRMVGE 829
+ + K G+
Sbjct: 778 EAYSQQMKASRGQ 790
>gb|AAC27447.1| (AF047037) transitional endoplasmic reticulum ATPase TER94
[Drosophila melanogaster]
Length = 801
Score = 552 bits (1406), Expect = e-156
Identities = 336/842 (39%), Positives = 486/842 (56%), Gaps = 114/842 (13%)
Query: 9 QKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERI--TAAIVANPH-- 64
+KD + E + D +V + + + GD V ++G+R T IV +
Sbjct: 16 RKDRPNRLIVEEAQND-DNSVVSLSQAKMDELQLFRGDTVILKGKRRKETVCIVLSDDTC 74
Query: 65 PDDRGLDIIRMDGYIRKNAGVTIGDFVTIRRA-EVKEAKKVVLAP---AQKGVIVQIPGD 120
PD++ IRM+ +R N V + D V+++ +VK K+V + P + +GV +
Sbjct: 75 PDEK----IRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRILPIDESTEGVTGNLFEI 130
Query: 121 IVKNNLLG--RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNT 178
+K L RP+ GD + + ++F VV T
Sbjct: 131 YLKPYFLEAYRPIHMGDNFI-------------------------VRAAMRPIEFKVVLT 165
Query: 179 IPKGIVQITYNTEV--EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPE 236
P+ + T + + P E EE + V Y+DIGG ++ + +I+EMVELPL+HP
Sbjct: 166 DPEPYCIVAPETVIFCDGDPIKREEEEESLNAVGYDDIGGCRKQLAQIKEMVELPLRHPS 225
Query: 237 LFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLRE 296
LF+ +G++PP+G+L+YGPPGTGKTL+A+AVANE A+F INGPEIMSK GESE LR+
Sbjct: 226 LFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 285
Query: 297 IFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATN 356
F+EAE+N+PAIIFIDEIDAIAPKR++ GEVE+R+VSQLLTLMDG+K +IV+AATN
Sbjct: 286 AFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATN 345
Query: 357 RPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEK 416
RP+++DPALRR G
Sbjct: 346 RPNSIDPALRRFG----------------------------------------------- 358
Query: 417 DDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVG 476
RFD+E I + A E+ I ++ L+ +V L+++A +HG VG
Sbjct: 359 --RFDRE----IDIGIPDATGRLEVLRIHTKNMKLHDDVD-------LEQIAAESHGHVG 405
Query: 477 ADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALRE 536
ADLA+L EAA+ +R K I+ E + I EVL L VT +F A+ PSALRE
Sbjct: 406 ADLASLCSEAALQQIRE--KMDLIDLEDDKIDAEVLASLAVTMENFRYAMTKSSPSALRE 463
Query: 537 VLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTL 596
++EVPN W DIGGLE VK+EL+E V++P+++P F + G+ P +GVL YGPPG GKTL
Sbjct: 464 TVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTL 523
Query: 597 LAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR 656
LAKA+A E QANFI+++GPE+L+ W GESE +R+IF KAR A+P ++F DE+D+IA AR
Sbjct: 524 LAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCVLFFDELDSIAKAR 583
Query: 657 GTAEGEK--VTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVP 714
G G+ DR+INQ+LTEMDG+ V +I ATNRPDI+DPA+LRPGR D+LI +P
Sbjct: 584 GGNVGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 643
Query: 715 APDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAV-AK 773
PD+K+R I K + R LA +VDL +A+ T+G++GAD+ +C+ A A+R+A+ A+
Sbjct: 644 LPDDKSREAILKANLRKSALAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAE 703
Query: 774 LSPEELEEESEKFLKSL-------IVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRM 826
+ E+ E++ + +T F+ A+K + SV+ + Y F ++ ++
Sbjct: 704 IRREKERAENQNSAMDMDEDDPVPEITSAHFQEAMKFARRSVSDNDIRKYEMFAQTLQQS 763
Query: 827 VG 828
G
Sbjct: 764 RG 765
>sp|P54811|TER1_CAEEL TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 1 (P97/CDC48
HOMOLOG 1) >gi|7495467|pir||T18970 hypothetical protein
C06A1.1 - Caenorhabditis elegans
>gi|3874005|emb|CAA90050.1| (Z49886) contains similarity
to Pfam domain: PF00004 (ATPases associated with various
cellular activities (AAA)), Score=658.1,
E-value=1.5e-194, N=2~cDNA EST yk76f10.5 comes from this
gene; cDNA EST yk3h5.5 comes from this gene~cDNA EST
yk6d7.5 comes f>
Length = 809
Score = 550 bits (1403), Expect = e-155
Identities = 325/813 (39%), Positives = 473/813 (57%), Gaps = 113/813 (13%)
Query: 40 IGVEPGDIVEIEGERITAAIVANPHPDDRGLDIIRMDGYIRKNAGVTIGDFVTIRRA-EV 98
+G+ GD V ++G++ ++ + + +RM+ +R N + +GD V+I A +
Sbjct: 55 LGLFRGDAVILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNL 114
Query: 99 KEAKKVVLAPAQ---KGVIVQIPGDIVKNNLLG--RPVVKGDIIVASGRSEMYYSSGTPF 153
++ + P +G+ + +K L RP+ KGDI
Sbjct: 115 SYGTRIHVLPIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIFT--------------- 159
Query: 154 DEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQITYNTEV--EVLPQAVEVREEKIPEVTY 211
+ ++F VV T P ++ +T + E P E EE + ++ Y
Sbjct: 160 ----------VQAAMRTVEFKVVETEPAPACIVSPDTMIHYEGDPIKREEEEESMNDIGY 209
Query: 212 EDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEAN 271
+D+GG+++ + +I+EMVELPL+HP+LF+ +GI+PP+G+LL+GPPGTGKTL+A+AVANE
Sbjct: 210 DDLGGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLFGPPGTGKTLIARAVANETG 269
Query: 272 AYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEKR 331
++F INGPE+MSK GESE LR+ F+E E+N PAI+FIDEIDAIAPKRE+ GEVE+R
Sbjct: 270 SFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAILFIDEIDAIAPKREKTNGEVERR 329
Query: 332 VVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQI 391
+VSQLLTLMDG+K R ++VIAATNRP+++D ALRR G
Sbjct: 330 IVSQLLTLMDGVKGRSNLVVIAATNRPNSIDGALRRFG---------------------- 367
Query: 392 HTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILR-EDRN 450
RFD+E I + V + +ILR +N
Sbjct: 368 ---------------------------RFDREIDIGIPDAVGRL-------EILRIHTKN 393
Query: 451 LYIEVRTKLIDKL-LDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPR 509
+ KL D + L+++A HGFVGADLA+L EAA+ +R K I+ E + I
Sbjct: 394 M------KLADDVDLEQIANECHGFVGADLASLCSEAALQQIRE--KMELIDLEDDQIDA 445
Query: 510 EVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKY 569
EVL L VT +F A PSALRE ++E PN W DIGGL++VK+EL+E V++P+++
Sbjct: 446 EVLNSLAVTMENFRFAQGKSSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEH 505
Query: 570 PKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRI 629
P+ + + G+ P +GVL YGPPG GKTLLAKA+A E QANFI+I+GPE+L+ W GESE +
Sbjct: 506 PEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANV 565
Query: 630 REIFRKARQASPAIIFIDEIDAIAPARG---TAEGEKVTDRIINQLLTEMDGLVENSGVV 686
R++F KAR A+P ++F DE+D+IA ARG +G +DR+INQ+LTEMDG+ V
Sbjct: 566 RDVFDKARAAAPCVLFFDELDSIAKARGGGAGGDGGGASDRVINQVLTEMDGMNAKKNVF 625
Query: 687 VIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARR 746
+I ATNRPDI+DPA+LRPGR D+LI +P PDE +R +I K R PL+ D+DL LA+
Sbjct: 626 IIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASLRKTPLSKDLDLTFLAKN 685
Query: 747 TEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLI-----------VTRK 795
T G++GAD+ +C+ A A+R ++ K E E + + + +TR
Sbjct: 686 TVGFSGADLTEICQRACKLAIRESIEKEIRIEKERQDRQARGEELMEDDAVDPVPEITRA 745
Query: 796 DFEVALKKVKPSVTKYMMEYYRQFEESRKRMVG 828
FE A+K + SVT + Y F ++ ++ G
Sbjct: 746 HFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRG 778
>gb|AAF17568.1|AF202034_1 (AF202034) endoplasmic reticulum membrane fusion protein
[Drosophila melanogaster]
Length = 799
Score = 540 bits (1375), Expect = e-152
Identities = 336/837 (40%), Positives = 478/837 (56%), Gaps = 112/837 (13%)
Query: 9 QKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERI--TAAIVANPH-- 64
+KD + E + D +V + + + GD V ++G+R T IV +
Sbjct: 16 RKDRPNRLIVEEAQND-DNSVVSLSQAKMDELQLFRGDTVILKGKRRKETVCIVLSDDTC 74
Query: 65 PDDRGLDIIRMDGYIRKNAGVTIGDFVTIRRA-EVKEAKKVVLAPAQKGVIVQIPGDIVK 123
PD++ IRM+ +R N V + D V+++ +VK K+V + P + + V
Sbjct: 75 PDEK----IRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRILPIDEST------EGVT 124
Query: 124 NNLLGRPVVKGDIIVASGRSEMYYSSGTP--FDEIFRGFFEAMSVGFGELKFMVVNTIPK 181
NL E+Y P I G + ++F VV T P+
Sbjct: 125 GNLF----------------EIYLKPYFPRGLSAIHMGDNFIVRAAMRPIEFKVVLTDPE 168
Query: 182 GIVQITYNTEV--EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFE 239
+ T + + P E EE + V Y+DIGG ++ + +I+EMVELPL+HP LF+
Sbjct: 169 PYCIVAPETVIFCDGDPIKREEEEESLNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 228
Query: 240 RLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFK 299
+G++PP+G+L+YGPPGTGKTL+A+AVANE A+F INGPEIMSK GESE LR+ F+
Sbjct: 229 AIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFE 288
Query: 300 EAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPD 359
EAE+N+PAIIFIDEIDAIAPKR++ GEVE+R+VSQLLTLMDG+K +IV+AATNRP+
Sbjct: 289 EAEKNSPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPN 348
Query: 360 ALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDR 419
++DPALRR G R
Sbjct: 349 SIDPALRRFG-------------------------------------------------R 359
Query: 420 FDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADL 479
FD+E I + A E+ I ++ L+ +V L+++A +HG VGADL
Sbjct: 360 FDRE----IDIGIPDATGRLEVLRIHTKNMKLHDDVD-------LEQIAAESHGHVGADL 408
Query: 480 AALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLI 539
A+L EAA+ +R K I+ E + I EVL L VT +F A+ PSALRE ++
Sbjct: 409 ASLCSEAALQQIRE--KMDLIDLEDDKIDAEVLASLAVTMENFRYAMTKSSPSALRETVV 466
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
EVPN W DIGGLE VK+EL+E V++P+++P F + G+ P +GVL YGPPG GKTL AK
Sbjct: 467 EVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLPAK 526
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR-GT 658
A+A E QANFI+++GPE+L+ W GESE +R+IF K A+P ++F DE+D+IA +R G
Sbjct: 527 AIANECQANFISVKGPELLTMWFGESEANVRDIFDKGPSAAPCVLFFDELDSIAKSRCGN 586
Query: 659 AEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDE 718
DR+INQ+LTEMDG+ V +I ATNRPDI+DPA+LRPGR D+LI +P PD+
Sbjct: 587 VGDCGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 646
Query: 719 KARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAV-AKLSPE 777
K+R I K + R LA +VDL +A+ T+G++GAD+ +C+ A A+R+A+ A++ E
Sbjct: 647 KSREAILKANLRKFALAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRRE 706
Query: 778 ELEEESEKFLKS------LIVTRKDFEVALKKVKPSVT-----KYMMEYYRQFEESR 823
+ E++ +T FE A+K + SV+ KY M + FE+SR
Sbjct: 707 KERAENQNSAMDDEDDPVPEITSAHFEEAMKFARRSVSDNDIRKYEM-FAPDFEQSR 762
>pir||T40537 AAA family ATPase - fission yeast (Schizosaccharomyces pombe)
>gi|3116137|emb|CAA18886.1| (AL023288) AAA family ATPase
[Schizosaccharomyces pombe]
Length = 809
Score = 517 bits (1318), Expect = e-145
Identities = 279/614 (45%), Positives = 393/614 (63%), Gaps = 85/614 (13%)
Query: 209 VTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVAN 268
VT+ IGGL+ I +IR++VELP ++PELF+ I PP+GVLLYGPPGTGKT++ +AVA
Sbjct: 276 VTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVAA 335
Query: 269 EANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEV 328
EANA I+GP ++ KY GE+E RLR+IF++A + P+IIFIDEIDA+APKR E V E
Sbjct: 336 EANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAHQPSIIFIDEIDALAPKRTEDVSEA 395
Query: 329 EKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEI 388
E R V+ LLTL+DG+ + GKV+VIAATNRP+++D ALRRPGR ++EIE+
Sbjct: 396 ESRAVATLLTLLDGMANAGKVVVIAATNRPNSIDEALRRPGRLEKEIEI----------- 444
Query: 389 LQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILRED 448
G+P +K R D K+
Sbjct: 445 ------GIP-----------------DKSARLDIIKL----------------------- 458
Query: 449 RNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIP 508
L V ++ D L++LA TH +VGADLAA+ REAA+ ++R I K +T
Sbjct: 459 --LLSGVPNEINDAQLEDLASRTHAYVGADLAAVVREAALRAIKRTISLQK-----DTSG 511
Query: 509 REVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLK 568
++ +++ +F AL V SA+RE ++E PNVHW DIGG E+VKQ+L+E+VEWPL
Sbjct: 512 LDIFGAVQMDDLEF--ALSSVRQSAMREFMMESPNVHWSDIGGQEEVKQKLKESVEWPLT 569
Query: 569 YPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKR 628
+ + F RLG+ PPKGVLLYGPPG KT+ AKA+ATE+ NFIA++GPE+ K+VGESE+
Sbjct: 570 HGETFSRLGVRPPKGVLLYGPPGCSKTITAKAIATETGLNFIAVKGPELFDKFVGESERA 629
Query: 629 IREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVI 688
+R++F+KARQASP++IF DEIDA+ RG + +DR++ LL E+DG+ V+V+
Sbjct: 630 VRQVFQKARQASPSVIFFDEIDALTANRGE---DNSSDRVVAALLNELDGIEALRNVLVL 686
Query: 689 AATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTE 748
AATNRPD++DPAL+RPGR DRL+ V P+ +AR +I K+ M A+DVDL +A +TE
Sbjct: 687 AATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIAEKTE 746
Query: 749 GYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSV 808
G +GA++ A+C+EA + A+ E+LE + + + F+ AL ++ ++
Sbjct: 747 GCSGAEVVALCQEAGLIAMH--------EDLEAKE--------ICQAHFKTALLALRKAI 790
Query: 809 TKYMMEYYRQFEES 822
T+ M+EYY F ES
Sbjct: 791 TRDMLEYYASFSES 804
Score = 201 bits (506), Expect = 3e-50
Identities = 97/201 (48%), Positives = 135/201 (66%), Gaps = 2/201 (0%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAV 266
P V + DIGG +E +K++E VE PL H E F RLG+ PPKGVLLYGPPG KT+ AKA+
Sbjct: 543 PNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAKAI 602
Query: 267 ANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVG 326
A E FIA+ GPE+ K+ GESE +R++F++A + +P++IF DEIDA+ R E
Sbjct: 603 ATETGLNFIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIFFDEIDALTANRGE--D 660
Query: 327 EVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRK 386
RVV+ LL +DG+++ V+V+AATNRPD +DPAL RPGR DR + VG P+ + RK
Sbjct: 661 NSSDRVVAALLNELDGIEALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARK 720
Query: 387 EILQIHTRGMPIEPDFEKETV 407
+I++I M D + + +
Sbjct: 721 QIVKIQAEKMKFAEDVDLDLI 741
>gi|6323429 homology to the CDC48 gene product; Afg2p [Saccharomyces
cerevisiae] >gi|416590|sp|P32794|AFG2_YEAST AFG2 PROTEIN
>gi|481664|pir||S39110 valosin-containing protein
homolog AFG2 - yeast (Saccharomyces cerevisiae)
>gi|295573|gb|AAC37367.1| (L14615) AFG2 [Saccharomyces
cerevisiae] >gi|625113|gb|AAB82355.1| (U19729) Afg2p
[Saccharomyces cerevisiae]
Length = 780
Score = 505 bits (1287), Expect = e-142
Identities = 281/643 (43%), Positives = 391/643 (60%), Gaps = 93/643 (14%)
Query: 181 KGIVQITYNTEVEVLPQAVEVREEKIPE-VTYEDIGGLKEAIEKIREMVELPLKHPELFE 239
KG IT++ E + R+ +PE ++Y +GGL + IE ++ +E+PL P LF
Sbjct: 219 KGSTHITFSKETQAN------RKYNLPEPLSYAAVGGLDKEIESLKSAIEIPLHQPTLFS 272
Query: 240 RLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFK 299
G+ PP+G+LL+GPPGTGKT+L + VAN +NA+ + INGP I+SKY GE+E LR+IF
Sbjct: 273 SFGVSPPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFN 332
Query: 300 EAEENAPAIIFIDEIDAIAPKR-EEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRP 358
EA + P+IIFIDEID+IAP R + GEVE RVV+ LLTLMDG+ + GKV+VIAATNRP
Sbjct: 333 EARKYQPSIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGMGAAGKVVVIAATNRP 392
Query: 359 DALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDD 418
+++DPALRRPGRFD+E+E+G+PD R +I
Sbjct: 393 NSVDPALRRPGRFDQEVEIGIPDVDARFDI------------------------------ 422
Query: 419 RFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGAD 478
+ ++ S+ S+ + D + + +A THG+VGAD
Sbjct: 423 ---------LTKQFSRMSSDRHVLD-----------------SEAIKYIASKTHGYVGAD 456
Query: 479 LAALAREAAMVVLRR-LIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREV 537
L AL RE+ M ++R L + I+ + LKVT D A+ + PSA+RE+
Sbjct: 457 LTALCRESVMKTIQRGLGTDANIDKFS----------LKVTLKDVESAMVDIRPSAMREI 506
Query: 538 LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLL 597
+E+P V+W DIGG E++K +++E ++ PL+ + F RLGI+ PKGVLLYGPPG KTL
Sbjct: 507 FLEMPKVYWSDIGGQEELKTKMKEMIQLPLEASETFARLGISAPKGVLLYGPPGCSKTLT 566
Query: 598 AKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARG 657
AKA+ATES NF+A++GPE+ +K+VGESE+ IREIFRKAR A+P+IIF DEIDA++P R
Sbjct: 567 AKALATESGINFLAVKGPEIFNKYVGESERAIREIFRKARSAAPSIIFFDEIDALSPDR- 625
Query: 658 TAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 717
+ ++ LL E+DG+ E GVV++AATNRPD +D ALLRPGR DR I V PD
Sbjct: 626 DGSSTSAANHVLTSLLNEIDGVEELKGVVIVAATNRPDEIDAALLRPGRLDRHIYVGPPD 685
Query: 718 EKARFEIFKVHTRGMPLADD-VDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSP 776
AR EI K T+ + VDL ELA RTEGY+GA++ +C+EA + A+
Sbjct: 686 VNARLEILKKCTKKFNTEESGVDLHELADRTEGYSGAEVVLLCQEAGLAAIM-------- 737
Query: 777 EELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQF 819
E+L+ V + FE A K + +T M+ YY +F
Sbjct: 738 EDLDVAK--------VELRHFEKAFKGIARGITPEMLSYYEEF 772
>pir||T39584 hypothetical protein SPBC16E9.10c - fission yeast
(Schizosaccharomyces pombe) >gi|2467272|emb|CAB16902.1|
(Z99759) AAA ATPase [Schizosaccharomyces pombe]
Length = 779
Score = 504 bits (1283), Expect = e-141
Identities = 280/629 (44%), Positives = 403/629 (63%), Gaps = 29/629 (4%)
Query: 197 QAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPG 256
Q E E +++ DIGGL + I ++ E+V +P+KHPE+++ GI PP+GVLL+GPPG
Sbjct: 159 QKAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPG 218
Query: 257 TGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDA 316
GKT+LA A+ANE FI+I+ P I+S GESE+++RE+F+EA+ AP ++FIDEIDA
Sbjct: 219 CGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREVFEEAKSLAPCLMFIDEIDA 278
Query: 317 IAPKREEVVGEVEKRVVSQLLTLMDGL---KSRGK-VIVIAATNRPDALDPALRRPGRFD 372
+ PKRE E+E+R+V+Q LT MD L K+ GK V+VI ATNRPD+LD ALRR GRFD
Sbjct: 279 VTPKRESAQREMERRIVAQFLTCMDELSFEKTDGKPVLVIGATNRPDSLDSALRRAGRFD 338
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKV 432
REI + VP + R++IL+ +G+ + DF+ + K D ++ +
Sbjct: 339 REICLTVPSQDAREKILRTMAKGLKLSGDFDFRQLAKQTPGYVGAD----------LKAL 388
Query: 433 SKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLR 492
+ A IK I E L LD ++ + +D+A + ++ +
Sbjct: 389 TAAAGIIAIKRIFNEISPL----------NKLDLNSDPRFNELDSDMALDSNDSLPLDHS 438
Query: 493 RLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGL 552
+I+ +N + + E LE L + DF EAL V+PS+ RE VP V W++IG L
Sbjct: 439 SIIQR-YLNAHPDPLSPEELEPLAICPQDFIEALAKVQPSSKREGFATVPGVSWNNIGAL 497
Query: 553 EDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAI 612
+ ++ EL+ A+ P+K P+ ++ +GI+ P GVLL+GPPG GKTLLAKAVA ES+ANFI+I
Sbjct: 498 KSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKAVANESKANFISI 557
Query: 613 RGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQL 672
RGPE+L+K+VGESE+ +R++F +AR +SP +IF DE+DA+ P R + E + R++N L
Sbjct: 558 RGPELLNKYVGESERAVRQVFLRARASSPCVIFFDELDAMVPRRDDSLSE-ASSRVVNTL 616
Query: 673 LTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGM 732
LTE+DGL + SGV VIAATNRPDI+DPA+LRPGR D+ +LV PD R EI K T+
Sbjct: 617 LTELDGLSDRSGVYVIAATNRPDIIDPAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQT 676
Query: 733 PLADDVDLKELAR--RTEGYTGADIAAVCREAAMNALRRAV-AKLSPEELEEESEKFLKS 789
PL ++V+L L R R ++GAD+AA+ REAA+ ALR AV A ++ E E L+
Sbjct: 677 PLHEEVNLDVLGRDERCSNFSGADLAALVREAAVTALRSAVFADIASNEPEITQHSALEP 736
Query: 790 LIVTRKDFEVALKKVKPSVTKYMMEYYRQ 818
+ VT DFE+A K +KPSV+ + Y++
Sbjct: 737 IRVTNADFELAFKNIKPSVSDRDRQKYQR 765
>pir||T51257 calmodulin-binding protein - Arabidopsis thaliana
>gi|9662988|emb|CAC00732.1| (AL390921)
calmodulin-binding protein [Arabidopsis thaliana]
Length = 1022
Score = 471 bits (1198), Expect = e-131
Identities = 267/642 (41%), Positives = 381/642 (58%), Gaps = 53/642 (8%)
Query: 214 IGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAY 273
+GGL + +R++++ L LG+ P KGVL++GPPGTGKT LA+ A +
Sbjct: 387 LGGLSKEYAILRDIIDSSSIKNSL-SSLGLRPTKGVLIHGPPGTGKTSLARTFARHSGVN 445
Query: 274 FIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVV 333
F ++NGPEI+S+Y GESE+ L E+F+ A PA++FID++DAIAP R+E E+ +R+V
Sbjct: 446 FFSVNGPEIISQYLGESEKALDEVFRSASNATPAVVFIDDLDAIAPARKEGGEELSQRMV 505
Query: 334 SQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHT 393
+ LL LMDG+ V+VIAATNRPD+++PALRRPGR DREIE+GVP R +IL I
Sbjct: 506 ATLLNLMDGISRTDGVVVIAATNRPDSIEPALRRPGRLDREIEIGVPSSTQRSDILHIIL 565
Query: 394 RGMP------------------IEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKA 435
RGM + D A L + +E+ A
Sbjct: 566 RGMRHSLSNIQVEQLAMATHGFVGADLSALCCEAAFVCLRRHLDQSSSSSNLPLEEAPIA 625
Query: 436 KSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLI 495
+S + DI + + T ++ GA + E +V +
Sbjct: 626 ESSSNMSDISSDSSDSASSCIT------------ISATTSGAQRSFSLDETVSLVADDIQ 673
Query: 496 KEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDV 555
G E + + ++ L V DF A + PSA+REV++EVP V+W+D+GG +V
Sbjct: 674 NNGNSCSE-QMLRKQGEHTLSVGFEDFENAKTKIRPSAMREVILEVPKVNWEDVGGQNEV 732
Query: 556 KQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGP 615
K +L EAVEWP K+ AFKR+G PP G+L++GPPG KTL+A+AVA+E++ NF+A++GP
Sbjct: 733 KNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLMARAVASEAKLNFLAVKGP 792
Query: 616 EVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA-EGEKVTDRIINQLLT 674
E+ SKWVGESEK +R +F KAR +P+IIF DEID++A RG +G V+DR+++QLL
Sbjct: 793 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDSLASIRGKENDGVSVSDRVMSQLLV 852
Query: 675 EMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPL 734
E+DGL + GV VIAATNRPD +D ALLRPGRFDRL+ V P+E R I K+H R +P
Sbjct: 853 ELDGLHQRVGVTVIAATNRPDKIDSALLRPGRFDRLLYVGPPNETDREAILKIHLRKIPC 912
Query: 735 ADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTR 794
+ D+ LKELA T+GYTGADI+ +CREAA+ AL ++ E+EE S + LK+
Sbjct: 913 SSDICLKELASITKGYTGADISLICREAAIAALEESL------EMEEISMRHLKA----- 961
Query: 795 KDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGESTGREPD 836
A+ +++P+ + Y+ E +R+V RE +
Sbjct: 962 -----AISQIEPT----EILSYKALSEKFQRLVHTDPQREEE 994
Score = 208 bits (525), Expect = 2e-52
Identities = 113/256 (44%), Positives = 160/256 (62%), Gaps = 8/256 (3%)
Query: 189 NTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKG 248
N + ++ P A+ ++P+V +ED+GG E ++ E VE P KH + F+R+G PP G
Sbjct: 701 NAKTKIRPSAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSG 760
Query: 249 VLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAI 308
+L++GPPG KTL+A+AVA+EA F+A+ GPE+ SK+ GESE+ +R +F +A NAP+I
Sbjct: 761 ILMFGPPGCSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSI 820
Query: 309 IFIDEIDAIAPKR--EEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALR 366
IF DEID++A R E V RV+SQLL +DGL R V VIAATNRPD +D AL
Sbjct: 821 IFFDEIDSLASIRGKENDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDSALL 880
Query: 367 RPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIK 426
RPGRFDR + VG P++ R+ IL+IH R +P D +K L + K + I
Sbjct: 881 RPGRFDRLLYVGPPNETDREAILKIHLRKIPCSSDI----CLKELASITKG--YTGADIS 934
Query: 427 KIIEKVSKAKSEEEIK 442
I + + A EE ++
Sbjct: 935 LICREAAIAALEESLE 950
>pir||T50928 calmodulin-binding protein [imported] - Arabidopsis thaliana
>gi|6760428|gb|AAF28347.1| (AF217546) calmodulin-binding
protein [Arabidopsis thaliana]
>gi|6760430|gb|AAF28348.1| (AF217547) calmodulin-binding
protein [Arabidopsis thaliana]
Length = 1022
Score = 458 bits (1166), Expect = e-127
Identities = 265/645 (41%), Positives = 380/645 (58%), Gaps = 59/645 (9%)
Query: 214 IGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAY 273
+GGL + +R++++ L LG+ P KGVL++GPPGTGKT LA+ A +
Sbjct: 387 LGGLSKEYAILRDIIDSSSIKNSL-SGLGLRPTKGVLIHGPPGTGKTSLARTFARHSGVN 445
Query: 274 FIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVV 333
F ++NGPEI+S+Y GESE+ L E+F+ A PA +FID++DAIAP R+E E+ +R+V
Sbjct: 446 FFSVNGPEIISQYLGESEKALDEVFRSASNATPAAVFIDDLDAIAPARKEGGEELSQRMV 505
Query: 334 SQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEI----- 388
+ LL LMDG+ V+VIAATNRPD+++PALRRPGR DREIE+G P R +I
Sbjct: 506 ATLLNLMDGISRTDGVVVIAATNRPDSIEPALRRPGRLDREIEIGAPSSTQRSDILHVIL 565
Query: 389 --------------LQIHTRGMPIEPDFEKETVIKALKELEK--DDRFDKEKIKKIIEKV 432
L + T G + D A L + D + + +E+
Sbjct: 566 CGMRHSLSNIQVEQLAMATHGF-VGADLSALCCEAAFVCLRRHLDQSYSSSNLP--LEEA 622
Query: 433 SKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLR 492
A+S + DI + + T ++ GA + E +V
Sbjct: 623 PIAESSSSMSDISSDSSDSASSCIT------------ISATTSGAQRSFSLDETVSLVAD 670
Query: 493 RLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGL 552
G E + + ++ L V DF A + PSA+REV++EVP V+W+D+GG
Sbjct: 671 DNQNNGNSCSE-QMLRKQGEHTLSVGFEDFENAKTKIRPSAMREVILEVPKVNWEDVGGQ 729
Query: 553 EDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAI 612
+VK +L EAVEWP K+ AFKR+G PP G+L++GPPG KTL+A+AVA+E++ NF+A+
Sbjct: 730 NEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLMARAVASEAKLNFLAV 789
Query: 613 RGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA-EGEKVTDRIINQ 671
+GPE+ SKWVGESEK +R +F KAR +P+IIF DEID++A RG +G V+DR+++Q
Sbjct: 790 KGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDSLASIRGKENDGVSVSDRVMSQ 849
Query: 672 LLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG 731
LL E+DGL + GV VIAATNRPD +D ALLRPGRFDRL+ V P+E R I K+H R
Sbjct: 850 LLVELDGLHQRVGVTVIAATNRPDKIDSALLRPGRFDRLLYVGPPNETDREAILKIHLRK 909
Query: 732 MPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLI 791
+P + D+ LKELA T+GYTGADI+ +CREAA+ AL ++ E+EE S + LK+
Sbjct: 910 IPCSSDICLKELASITKGYTGADISLICREAAIAALEESL------EMEEISMRHLKA-- 961
Query: 792 VTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGESTGREPD 836
A+ +++P+ + Y+ E +R+V RE +
Sbjct: 962 --------AISQIEPT----EILSYKALSEKFQRLVHTDPQREEE 994
Score = 208 bits (525), Expect = 2e-52
Identities = 113/256 (44%), Positives = 160/256 (62%), Gaps = 8/256 (3%)
Query: 189 NTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKG 248
N + ++ P A+ ++P+V +ED+GG E ++ E VE P KH + F+R+G PP G
Sbjct: 701 NAKTKIRPSAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSG 760
Query: 249 VLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAI 308
+L++GPPG KTL+A+AVA+EA F+A+ GPE+ SK+ GESE+ +R +F +A NAP+I
Sbjct: 761 ILMFGPPGCSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSI 820
Query: 309 IFIDEIDAIAPKR--EEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALR 366
IF DEID++A R E V RV+SQLL +DGL R V VIAATNRPD +D AL
Sbjct: 821 IFFDEIDSLASIRGKENDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDSALL 880
Query: 367 RPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIK 426
RPGRFDR + VG P++ R+ IL+IH R +P D +K L + K + I
Sbjct: 881 RPGRFDRLLYVGPPNETDREAILKIHLRKIPCSSDI----CLKELASITKG--YTGADIS 934
Query: 427 KIIEKVSKAKSEEEIK 442
I + + A EE ++
Sbjct: 935 LICREAAIAALEESLE 950
>gi|6322994 Yll034cp [Saccharomyces cerevisiae]
>gi|2492526|sp|Q07844|YL34_YEAST HYPOTHETICAL 93.1 KD
PROTEIN YLL034C >gi|2131732|pir||S64785 hypothetical
protein YLL034c - yeast (Saccharomyces cerevisiae)
>gi|1360222|emb|CAA97483.1| (Z73139) ORF YLL034c
[Saccharomyces cerevisiae]
Length = 837
Score = 450 bits (1146), Expect = e-125
Identities = 265/651 (40%), Positives = 401/651 (60%), Gaps = 57/651 (8%)
Query: 200 EVREEKIP-EVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTG 258
+++E++ P + + +GG+ + + ++ E++ LP+ HPE+F G+EPP+GVLL+GPPG G
Sbjct: 192 KIKEDRSPPNSSLKSLGGMDDVVAQLMELIGLPILHPEIFLSTGVEPPRGVLLHGPPGCG 251
Query: 259 KTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIA 318
KT +A A+A E FI+I+ P ++S GESE+++R++F EA AP ++F DEIDAI
Sbjct: 252 KTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEARSLAPCLVFFDEIDAIT 311
Query: 319 PKREE-VVGEVEKRVVSQLLTLMDGL---KSRGK-VIVIAATNRPDALDPALRRPGRFDR 373
PKR+ E+E+R+V+QLLT MD L K+ GK VI+I ATNRPD+LD ALRR GRFDR
Sbjct: 312 PKRDGGAQREMERRIVAQLLTSMDELTMEKTNGKPVIIIGATNRPDSLDAALRRAGRFDR 371
Query: 374 EIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKI----- 428
EI + VP++ R IL+ K L+ D D K+ K+
Sbjct: 372 EICLNVPNEVSRLHILK------------------KMSDNLKIDGAIDFAKLAKLTPGFV 413
Query: 429 ---IEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLD--ELAEVTHGFVGADLAALA 483
++ + A IK I + N+ T D D E+ E +G D ++L
Sbjct: 414 GADLKALVTAAGTCAIKRIFQTYANIK-STPTTATDSSEDNMEIDETANG----DESSLK 468
Query: 484 REAAMV-VLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVP 542
A M+ L + + I E + E L L + DF +AL ++P+A RE VP
Sbjct: 469 NTANMIDPLPLSVVQQFIRNYPEPLSGEQLSLLSIKYEDFLKALPTIQPTAKREGFATVP 528
Query: 543 NVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVA 602
+V W ++G L+ V+ EL A+ P+K P+ ++++GI+ P GVLL+GPPG GKTLLAKAVA
Sbjct: 529 DVTWANVGALQRVRLELNMAIVQPIKRPELYEKVGISAPGGVLLWGPPGCGKTLLAKAVA 588
Query: 603 TESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGE 662
ES+ANFI+I+GPE+L+K+VGESE+ IR++F +AR + P +IF DE+DA+ P R T+ E
Sbjct: 589 NESRANFISIKGPELLNKYVGESERSIRQVFTRARASVPCVIFFDELDALVPRRDTSLSE 648
Query: 663 KVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARF 722
+ R++N LLTE+DGL + G+ VI ATNRPD++DPA+LRPGR D+ + + P+ + +
Sbjct: 649 S-SSRVVNTLLTELDGLNDRRGIFVIGATNRPDMIDPAMLRPGRLDKSLFIELPNTEEKL 707
Query: 723 EIFKVHTR--GMPLADDVDLKELAR--RTEGYTGADIAAVCREAAMNALRR------AVA 772
+I K T+ G PL+ DVD +E+ R + ++GAD+AA+ RE+++ AL+R +
Sbjct: 708 DIIKTLTKSHGTPLSSDVDFEEIIRNEKCNNFSGADLAALVRESSVLALKRKFFQSEEIQ 767
Query: 773 KLSPEELEEESEKFL-----KSLIVTRKDFEVALKKVKPSVT-KYMMEYYR 817
+ +L++E E + +IVT DF AL+K+KPSV+ K ++Y R
Sbjct: 768 SVLDNDLDKEFEDLSVGVSGEEIIVTMSDFRSALRKIKPSVSDKDRLKYDR 818
Score = 210 bits (529), Expect = 5e-53
Identities = 129/394 (32%), Positives = 208/394 (52%), Gaps = 71/394 (18%)
Query: 183 IVQITYNTEVEVLP--QAVEVRE--EKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELF 238
++ I Y ++ LP Q RE +P+VT+ ++G L+ ++ + P+K PEL+
Sbjct: 500 LLSIKYEDFLKALPTIQPTAKREGFATVPDVTWANVGALQRVRLELNMAIVQPIKRPELY 559
Query: 239 ERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIF 298
E++GI P GVLL+GPPG GKTLLAKAVANE+ A FI+I GPE+++KY GESE +R++F
Sbjct: 560 EKVGISAPGGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVF 619
Query: 299 KEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRP 358
A + P +IF DE+DA+ P+R+ + E RVV+ LLT +DGL R + VI ATNRP
Sbjct: 620 TRARASVPCVIFFDELDALVPRRDTSLSESSSRVVNTLLTELDGLNDRRGIFVIGATNRP 679
Query: 359 DALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTR--GMPIEPDFEKETVIKALKELEK 416
D +DPA+ RPGR D+ + + +P+ + + +I++ T+ G P+ D + E +I+ EK
Sbjct: 680 DMIDPAMLRPGRLDKSLFIELPNTEEKLDIIKTLTKSHGTPLSSDVDFEEIIRN----EK 735
Query: 417 DDRFDKEKIKKIIEKVS------KAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEV 470
+ F + ++ + S K EEI+ +L D +DK ++L+
Sbjct: 736 CNNFSGADLAALVRESSVLALKRKFFQSEEIQSVLDND-----------LDKEFEDLSVG 784
Query: 471 THGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVE 530
G EE+ VT +DF AL+ ++
Sbjct: 785 VSG---------------------------------------EEIIVTMSDFRSALRKIK 805
Query: 531 PSALREVLIEVPNVHWDDIGGLEDVKQELREAVE 564
PS + + + +D + + +E+++A E
Sbjct: 806 PS-----VSDKDRLKYDRLNKKMGLTEEMKDAEE 834
>gb|AAB70457.1| (U68140) nuclear VCP-like protein NVLp.2 [Homo sapiens]
Length = 856
Score = 448 bits (1139), Expect = e-124
Identities = 281/688 (40%), Positives = 392/688 (56%), Gaps = 125/688 (18%)
Query: 191 EVE-VLPQAVEVR--EEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPK 247
E+E VL + + R E +I V +ED+GG ++++ +M+ + ++HPE++ LG+ PP+
Sbjct: 241 EIEAVLQKKAKARGLEFQISNVKFEDVGGNDMTLKEVCKML-IHMRHPEVYHHLGVVPPR 299
Query: 248 GVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPA 307
GVLL+GPPG GKTLLA A+A E + + + PEI+S GESE++LRE+F++A NAP
Sbjct: 300 GVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPC 359
Query: 308 IIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKS---RGKVIVIAATNRPDALDPA 364
IIFIDEIDAI PKRE ++E+R+V+QLLT MD L + +V+VI ATNRPD+LDPA
Sbjct: 360 IIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPA 419
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEK 424
LRR G RFD+E
Sbjct: 420 LRRAG-------------------------------------------------RFDREI 430
Query: 425 IKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLD--ELAEVTHGFVGADLAAL 482
I ++ S+ +R L R + + D LA +T GFVGADL AL
Sbjct: 431 CLGIPDEASR-------------ERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMAL 477
Query: 483 AREAAMV----VLRRLIKEGKINPEAETIPREVLEE------------------------ 514
REAAM VL +L ++ K NPE E +P + ++E
Sbjct: 478 CREAAMCAVNRVLMKLQEQQKKNPEMEDLPSKGVQEERLGTEPTSETQDELQRLLGLLRD 537
Query: 515 -----------LKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAV 563
L + DF AL V+PSA RE + VPNV W DIG LED+++EL A+
Sbjct: 538 QDPLSEEQMQGLCIELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAI 597
Query: 564 EWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVG 623
P++ P FK LG+ P GVLL GPPG GKTLLAKAVA ES NFI+++GPE+L+ +VG
Sbjct: 598 LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVG 657
Query: 624 ESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE-GEKVTDRIINQLLTEMDGLVEN 682
ESE+ +R++F++A+ ++P +IF DE+DA+ P R E G V R++NQLLTEMDGL
Sbjct: 658 ESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASV--RVVNQLLTEMDGLEAR 715
Query: 683 SGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG---MPLADDVD 739
V ++AATNRPDI+DPA+LRPGR D+ + V P R I K T+ PL DV+
Sbjct: 716 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVN 775
Query: 740 LKELA--RRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDF 797
L+ +A R + YTGAD++A+ REA++ ALR+ +A+ ++S L V+ K F
Sbjct: 776 LEAIAGDLRCDCYTGADLSALVREASICALRQEMAR-------QKSGNEKGELKVSHKHF 828
Query: 798 EVALKKVKPSVTKYMMEYYRQFEESRKR 825
E A KKV+ S++K Y + +ES R
Sbjct: 829 EEAFKKVRSSISKKDQIMYERLQESLSR 856
Score = 199 bits (502), Expect = 8e-50
Identities = 131/358 (36%), Positives = 194/358 (53%), Gaps = 50/358 (13%)
Query: 496 KEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDV 555
++GK+ + +E L+E+ EA+ + A R + ++ NV ++D+GG +
Sbjct: 219 RKGKLKNKGSKRKKEDLQEVDGE----IEAVLQKKAKA-RGLEFQISNVKFEDVGGNDMT 273
Query: 556 KQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGP 615
+E+ + + +++P+ + LG+ PP+GVLL+GPPG GKTLLA A+A E + + P
Sbjct: 274 LKEVCKMLIH-MRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAP 332
Query: 616 EVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTE 675
E++S GESE+++RE+F +A +P IIFIDEIDAI P R A + + RI+ QLLT
Sbjct: 333 EIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVA-SKDMERRIVAQLLTC 391
Query: 676 MDGL---VENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGM 732
MD L + V+VI ATNRPD LDPAL R GRFDR I + PDE +R I + R +
Sbjct: 392 MDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEASRERILQTLCRKL 451
Query: 733 PLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEE-------------L 779
L D LA T G+ GAD+ A+CREAAM A+ R + KL ++ +
Sbjct: 452 RLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMKLQEQQKKNPEMEDLPSKGV 511
Query: 780 EEE---------------------------SEKFLKSLIVTRKDFEVALKKVKPSVTK 810
+EE SE+ ++ L + DF VAL V+PS +
Sbjct: 512 QEERLGTEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCIELNDFIVALSSVQPSAKR 569
>gi|4505483 nuclear VCP-like; Nuclear valosin-containing protein-like [Homo
sapiens] >gi|11448052|ref|XP_001975.1| nuclear VCP-like
[Homo sapiens] >gi|2406580|gb|AAB70460.1| (U78772)
nuclear VCP-like protein NVLp.1 [Homo sapiens]
Length = 750
Score = 448 bits (1139), Expect = e-124
Identities = 281/688 (40%), Positives = 392/688 (56%), Gaps = 125/688 (18%)
Query: 191 EVE-VLPQAVEVR--EEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPK 247
E+E VL + + R E +I V +ED+GG ++++ +M+ + ++HPE++ LG+ PP+
Sbjct: 135 EIEAVLQKKAKARGLEFQISNVKFEDVGGNDMTLKEVCKML-IHMRHPEVYHHLGVVPPR 193
Query: 248 GVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPA 307
GVLL+GPPG GKTLLA A+A E + + + PEI+S GESE++LRE+F++A NAP
Sbjct: 194 GVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPC 253
Query: 308 IIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKS---RGKVIVIAATNRPDALDPA 364
IIFIDEIDAI PKRE ++E+R+V+QLLT MD L + +V+VI ATNRPD+LDPA
Sbjct: 254 IIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPA 313
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEK 424
LRR G RFD+E
Sbjct: 314 LRRAG-------------------------------------------------RFDREI 324
Query: 425 IKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLD--ELAEVTHGFVGADLAAL 482
I ++ S+ +R L R + + D LA +T GFVGADL AL
Sbjct: 325 CLGIPDEASR-------------ERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMAL 371
Query: 483 AREAAMV----VLRRLIKEGKINPEAETIPREVLEE------------------------ 514
REAAM VL +L ++ K NPE E +P + ++E
Sbjct: 372 CREAAMCAVNRVLMKLQEQQKKNPEMEDLPSKGVQEERLGTEPTSETQDELQRLLGLLRD 431
Query: 515 -----------LKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAV 563
L + DF AL V+PSA RE + VPNV W DIG LED+++EL A+
Sbjct: 432 QDPLSEEQMQGLCIELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAI 491
Query: 564 EWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVG 623
P++ P FK LG+ P GVLL GPPG GKTLLAKAVA ES NFI+++GPE+L+ +VG
Sbjct: 492 LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVG 551
Query: 624 ESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE-GEKVTDRIINQLLTEMDGLVEN 682
ESE+ +R++F++A+ ++P +IF DE+DA+ P R E G V R++NQLLTEMDGL
Sbjct: 552 ESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASV--RVVNQLLTEMDGLEAR 609
Query: 683 SGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG---MPLADDVD 739
V ++AATNRPDI+DPA+LRPGR D+ + V P R I K T+ PL DV+
Sbjct: 610 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVN 669
Query: 740 LKELA--RRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDF 797
L+ +A R + YTGAD++A+ REA++ ALR+ +A+ ++S L V+ K F
Sbjct: 670 LEAIAGDLRCDCYTGADLSALVREASICALRQEMAR-------QKSGNEKGELKVSHKHF 722
Query: 798 EVALKKVKPSVTKYMMEYYRQFEESRKR 825
E A KKV+ S++K Y + +ES R
Sbjct: 723 EEAFKKVRSSISKKDQIMYERLQESLSR 750
Score = 199 bits (502), Expect = 8e-50
Identities = 131/358 (36%), Positives = 194/358 (53%), Gaps = 50/358 (13%)
Query: 496 KEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDV 555
++GK+ + +E L+E+ EA+ + A R + ++ NV ++D+GG +
Sbjct: 113 RKGKLKNKGSKRKKEDLQEVDGE----IEAVLQKKAKA-RGLEFQISNVKFEDVGGNDMT 167
Query: 556 KQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGP 615
+E+ + + +++P+ + LG+ PP+GVLL+GPPG GKTLLA A+A E + + P
Sbjct: 168 LKEVCKMLIH-MRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAP 226
Query: 616 EVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTE 675
E++S GESE+++RE+F +A +P IIFIDEIDAI P R A + + RI+ QLLT
Sbjct: 227 EIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVA-SKDMERRIVAQLLTC 285
Query: 676 MDGL---VENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGM 732
MD L + V+VI ATNRPD LDPAL R GRFDR I + PDE +R I + R +
Sbjct: 286 MDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEASRERILQTLCRKL 345
Query: 733 PLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEE-------------L 779
L D LA T G+ GAD+ A+CREAAM A+ R + KL ++ +
Sbjct: 346 RLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMKLQEQQKKNPEMEDLPSKGV 405
Query: 780 EEE---------------------------SEKFLKSLIVTRKDFEVALKKVKPSVTK 810
+EE SE+ ++ L + DF VAL V+PS +
Sbjct: 406 QEERLGTEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCIELNDFIVALSSVQPSAKR 463
>gb|AAF01545.1|AC009325_15 (AC009325) putative cell division control protein [Arabidopsis
thaliana]
Length = 703
Score = 439 bits (1117), Expect = e-122
Identities = 259/654 (39%), Positives = 364/654 (55%), Gaps = 88/654 (13%)
Query: 199 VEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTG 258
+EV K P T++D GG+K+ ++++ V P+ +PE F+++G++PP G+L +GPPG G
Sbjct: 105 LEVEGTKGP--TFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCG 162
Query: 259 KTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIA 318
KT LA A+ANEA F I+ E++S G SEE +RE+F +A AP+I+FIDEIDAI
Sbjct: 163 KTKLANAIANEAGVPFYKISATEVISGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIG 222
Query: 319 PKREEVVGEVEKRVVSQLLTLMDGLKSRGK----------VIVIAATNRPDALDPALRRP 368
KRE E+EKR+V+QLLT MDG ++G V+VI ATNRPDALDPALRR
Sbjct: 223 SKRENQQREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRS 282
Query: 369 GRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKI 428
GRF+ EI + PD+ R EIL + ++L + FDK++I
Sbjct: 283 GRFETEIALTAPDEDARAEILSV------------------VAQKLRLEGPFDKKRI--- 321
Query: 429 IEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAM 488
A +T GFVGADL ++A A
Sbjct: 322 ---------------------------------------ARLTPGFVGADLESVAYLAGR 342
Query: 489 VVLRRLIKEGKINPEAE----------TIPREVLEELKVTKADFYEALKMVEPSALREVL 538
++R++ K + P E LE+L V +DF EA+ +V+ S RE
Sbjct: 343 KAIKRILDSRKSEQSGDGEDDKSWLRMPWPEEELEKLFVKMSDFEEAVNLVQASLTREGF 402
Query: 539 IEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLA 598
VP+V WDD+GGL+ ++ + + P+K P +K G+ G LLYGPPG GKTL+A
Sbjct: 403 SIVPDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIA 462
Query: 599 KAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGT 658
KA A E+ ANF+ I+G E+L+K+VGESE IR +F++AR +P +IF DE+DA+ +RG
Sbjct: 463 KAAANEAGANFMHIKGAELLNKYVGESELAIRTLFQRARTCAPCVIFFDEVDALTTSRG- 521
Query: 659 AEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDE 718
EG V +R++NQ L E+DG E V VI ATNRPD++DPA LRPGRF L+ VP P+
Sbjct: 522 KEGAWVVERLLNQFLVELDG-GERRNVYVIGATNRPDVVDPAFLRPGRFGNLLYVPLPNA 580
Query: 719 KARFEIFKVHTRGMPLADDVDLKELARRT-EGYTGADIAAVCREAAMNALRRAVAKLSPE 777
R I K R P+ VDL +A+ EG++GAD+A + ++A A+ + S E
Sbjct: 581 DERASILKAIARKKPIDPSVDLDGIAKNNCEGFSGADLAHLVQKATFQAVEEMIG--SSE 638
Query: 778 ELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGEST 831
E++ + I TR FE AL V PSV K +Y + VG +T
Sbjct: 639 SSEDDVTDITQCTIKTR-HFEQALSLVSPSVNKQQRRHYDALSTKLQESVGRNT 691
Score = 173 bits (434), Expect = 7e-42
Identities = 101/278 (36%), Positives = 153/278 (54%), Gaps = 18/278 (6%)
Query: 179 IPKGIVQITYNTEVEVLPQAVEVRE--EKIPEVTYEDIGGLKEAIEKIREMVELPLKHPE 236
+ K V+++ E L QA RE +P+V ++D+GGL + + P+K P+
Sbjct: 376 LEKLFVKMSDFEEAVNLVQASLTREGFSIVPDVKWDDVGGLDHLRLQFNRYIVRPIKKPD 435
Query: 237 LFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLRE 296
+++ G++ G LLYGPPG GKTL+AKA ANEA A F+ I G E+++KY GESE +R
Sbjct: 436 IYKAFGVDLETGFLLYGPPGCGKTLIAKAAANEAGANFMHIKGAELLNKYVGESELAIRT 495
Query: 297 IFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATN 356
+F+ A AP +IF DE+DA+ R + V +R+++Q L +DG R V VI ATN
Sbjct: 496 LFQRARTCAPCVIFFDEVDALTTSRGKEGAWVVERLLNQFLVELDG-GERRNVYVIGATN 554
Query: 357 RPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEK 416
RPD +DPA RPGRF + V +P+ R IL+ R PI+P + + + K
Sbjct: 555 RPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAK-----NN 609
Query: 417 DDRFDKEKIKKIIEKV----------SKAKSEEEIKDI 444
+ F + +++K S SE+++ DI
Sbjct: 610 CEGFSGADLAHLVQKATFQAVEEMIGSSESSEDDVTDI 647
>gb|AAF53216.1| (AE003637) CG5776 gene product [Drosophila melanogaster]
Length = 799
Score = 400 bits (1018), Expect = e-110
Identities = 237/660 (35%), Positives = 362/660 (53%), Gaps = 121/660 (18%)
Query: 180 PKGIVQITYNTEVEVLPQAVEVREEKIP---EVTYEDIGGLKEAIEKIREMVELPLKHPE 236
P +Q+T T++ ++ +EE+ +T IGGL ++ + E +E L
Sbjct: 237 PLQFIQVTNVTKLHLITDDANQQEEEQKISHRITKCQIGGLDRQLQLVEESMEYALGFRT 296
Query: 237 LFERLGIEPPKGVLLYGPPGTGKTLLAKAVA------NEANAYFIAINGPEIMSKYYGES 290
L G+ +G+LLYG G GK+++ +A+ ++ + I IN E+ SK+ GE+
Sbjct: 297 L--PAGLRVSRGLLLYGATGCGKSMVLEAMCAVAEERSQGHVQLIRINSGEVYSKFLGET 354
Query: 291 EERLREIFKEAEENAP--AIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRG- 347
E++L IF+ A + P ++ I+++ + PK+E ++ KRV L+L+D L S
Sbjct: 355 EQKLGAIFERAYNHYPHPTLLLIEDVHNLCPKQEN--SDLVKRVSLAFLSLLDQLSSPSQ 412
Query: 348 ----KVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFE 403
K V+A +++ D L P++RR GR D E+E+G P Q R EI
Sbjct: 413 LKGSKTFVLATSSQIDTLHPSIRRAGRLDNEVELGAPSSQARLEI--------------- 457
Query: 404 KETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKL 463
++ +I+ V S+EE+
Sbjct: 458 ---------------------VRCLIKSVEHQLSDEEV---------------------- 474
Query: 464 LDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFY 523
+ +A +THG+VGADLA L A + + + NP +
Sbjct: 475 -EHVASITHGYVGADLANLVYAAML--------QAQPNP--------------LQMPHLQ 511
Query: 524 EALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKG 583
AL ++PSA+REVLIE PNV W DIGG +++ +++A+EWPL + F+RLGI PP+G
Sbjct: 512 AALTRIKPSAMREVLIECPNVQWSDIGGQSELRLAMQQAIEWPLLHADKFQRLGIKPPRG 571
Query: 584 VLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAI 643
+L++GPPG KT++AKA+ATES+ NF++I+GPE+ S WVGESE+ +RE+FRKARQ +PAI
Sbjct: 572 ILMFGPPGCSKTMIAKALATESKLNFLSIKGPELFSMWVGESERAVREVFRKARQVAPAI 631
Query: 644 IFIDEIDAIAPAR----GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDP 699
+F DEIDAI R G++ G V +R++ QLLTE+DG+ V ++AATNRPD++D
Sbjct: 632 VFFDEIDAIGGERSEGDGSSSGSSVKERVLTQLLTELDGVEALQNVTIVAATNRPDMIDK 691
Query: 700 ALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVC 759
ALLRPGR DR++ V P +AR EI K+ R MP+++DVD+++L + TEGY+GA+I AVC
Sbjct: 692 ALLRPGRIDRILYVGLPQCEARREILKIKLRAMPISNDVDMEKLVQLTEGYSGAEIQAVC 751
Query: 760 REAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQF 819
EAA+ AL + E E K+ DFE ALK V P + +++ Y +
Sbjct: 752 HEAALRALE--------QSFEAEDVKW--------TDFEHALKAVPPRTSPELLKLYEDY 795
Score = 206 bits (518), Expect = 1e-51
Identities = 101/221 (45%), Positives = 151/221 (67%), Gaps = 5/221 (2%)
Query: 194 VLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYG 253
+ P A+ + P V + DIGG E +++ +E PL H + F+RLGI+PP+G+L++G
Sbjct: 517 IKPSAMREVLIECPNVQWSDIGGQSELRLAMQQAIEWPLLHADKFQRLGIKPPRGILMFG 576
Query: 254 PPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDE 313
PPG KT++AKA+A E+ F++I GPE+ S + GESE +RE+F++A + APAI+F DE
Sbjct: 577 PPGCSKTMIAKALATESKLNFLSIKGPELFSMWVGESERAVREVFRKARQVAPAIVFFDE 636
Query: 314 IDAIAPKREEVVG-----EVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRP 368
IDAI +R E G V++RV++QLLT +DG+++ V ++AATNRPD +D AL RP
Sbjct: 637 IDAIGGERSEGDGSSSGSSVKERVLTQLLTELDGVEALQNVTIVAATNRPDMIDKALLRP 696
Query: 369 GRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIK 409
GR DR + VG+P + R+EIL+I R MPI D + E +++
Sbjct: 697 GRIDRILYVGLPQCEARREILKIKLRAMPISNDVDMEKLVQ 737
>gb|AAK42565.1| AAA family ATPase [Sulfolobus solfataricus]
Length = 607
Score = 400 bits (1016), Expect = e-110
Identities = 247/634 (38%), Positives = 352/634 (54%), Gaps = 114/634 (17%)
Query: 199 VEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTG 258
VE+ ++KI T++DIGG ++A ++IRE +ELPLK+ ++ + G++PPKG+LL+GPPG G
Sbjct: 51 VEIEDKKI---TWDDIGGYEDAKKEIREYIELPLKNKDVATKYGLKPPKGMLLFGPPGCG 107
Query: 259 KTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIA 318
KT++ +A+ANE+ F+ +N +IMSK+YGESE RLRE+F A +NAP I+F DEID I
Sbjct: 108 KTMMMRALANESKLNFLYVNISDIMSKWYGESEARLRELFNNARKNAPCILFFDEIDTIG 167
Query: 319 PKREEVVGE-VEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEV 377
KRE G+ V R++S +L+ +DGL S VIV+ +TN P LD AL R GRFD+ I +
Sbjct: 168 VKRESHTGDSVTPRLLSLMLSEIDGLHSEDGVIVVGSTNVPQMLDKALLRAGRFDKLIYI 227
Query: 378 GVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKS 437
G P+K+ RK+ILQIH RG P+ D D +K+ +I E+ S
Sbjct: 228 GPPNKEARKQILQIHCRGKPLAED------------------VDFDKLAEITERYS---- 265
Query: 438 EEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKE 497
GADLA L +EAA V I++
Sbjct: 266 --------------------------------------GADLANLCQEAARKVASEAIEK 287
Query: 498 GKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWD---------- 547
G + K+T ADF E +K +PS +++ + D
Sbjct: 288 G--------------ADRKITMADFIELIKKYKPSITLQMIEDYEKFRLDFERRVRKGEE 333
Query: 548 -----------DIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTL 596
DIGG ++K EL+E +E L + K ++L + P +G+LLYGPPG GKT+
Sbjct: 334 ENELEEKLTLNDIGGYNEIKTELKELLELQLYHYKLLEQLRVPPIRGILLYGPPGVGKTM 393
Query: 597 LAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR 656
+AKA+A IA+ G E++ K + I+E+F +AR+ PAII +DE+DAIA R
Sbjct: 394 MAKALAKTLNVKLIALSGAEIMYKGYEGAIAAIKEVFNRARENKPAIILLDELDAIASKR 453
Query: 657 GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAP 716
+ + + +I+NQLLTEMDG+ VVVI TNR +DPALLRPGRFD++I +P P
Sbjct: 454 -SYKSYGDSSKIVNQLLTEMDGIRSLKEVVVIGTTNRLKAIDPALLRPGRFDKIIHMPLP 512
Query: 717 DEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSP 776
+ + R +I + G + VD LA +TEGY+GAD+AA+ REA M L+
Sbjct: 513 NREERLDILMKYI-GKEECEKVDCGILADQTEGYSGADLAALAREAKMKVLKSI------ 565
Query: 777 EELEEESEKFLKSLIVTRKDFEVALKKVKPSVTK 810
L ES + L TR+D AL K+ PSV K
Sbjct: 566 --LRGESNRTL-----TREDLIDALNKIHPSVKK 592
Score = 269 bits (681), Expect = 8e-71
Identities = 135/304 (44%), Positives = 202/304 (66%), Gaps = 13/304 (4%)
Query: 524 EALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKG 583
+AL++ S ++V IE + WDDIGG ED K+E+RE +E PLK + G+ PPKG
Sbjct: 38 KALQLQNKSQKKKVEIEDKKITWDDIGGYEDAKKEIREYIELPLKNKDVATKYGLKPPKG 97
Query: 584 VLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAI 643
+LL+GPPG GKT++ +A+A ES+ NF+ + +++SKW GESE R+RE+F AR+ +P I
Sbjct: 98 MLLFGPPGCGKTMMMRALANESKLNFLYVNISDIMSKWYGESEARLRELFNNARKNAPCI 157
Query: 644 IFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLR 703
+F DEID I R + G+ VT R+++ +L+E+DGL GV+V+ +TN P +LD ALLR
Sbjct: 158 LFFDEIDTIGVKRESHTGDSVTPRLLSLMLSEIDGLHSEDGVIVVGSTNVPQMLDKALLR 217
Query: 704 PGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAA 763
GRFD+LI + P+++AR +I ++H RG PLA+DVD +LA TE Y+GAD+A +C+EAA
Sbjct: 218 AGRFDKLIYIGPPNKEARKQILQIHCRGKPLAEDVDFDKLAEITERYSGADLANLCQEAA 277
Query: 764 MNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESR 823
K++ E +E+ +++ +T DF +KK KPS+T M+E Y +F
Sbjct: 278 --------RKVASEAIEKGADR-----KITMADFIELIKKYKPSITLQMIEDYEKFRLDF 324
Query: 824 KRMV 827
+R V
Sbjct: 325 ERRV 328
>gb|AAD20084.1| (AC006836) putative AAA-type ATPase [Arabidopsis thaliana]
Length = 603
Score = 395 bits (1003), Expect = e-108
Identities = 234/623 (37%), Positives = 348/623 (55%), Gaps = 104/623 (16%)
Query: 213 DIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANA 272
+IGG + A++ +RE++ P ++P LG++ P+G+LLYGPPGTGKT L +AV E +A
Sbjct: 23 EIGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECDA 82
Query: 273 YFIAINGPEIMSKYYGESEERLREIFKEAEENA----PAIIFIDEIDAIAPKREEVVGEV 328
+ I ++ + + GESE+ LRE F EA +A P++IFIDEID + P+R+ E
Sbjct: 83 HLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSVIFIDEIDVLCPRRD-ARREQ 141
Query: 329 EKRVVSQLLTLMDGLK---SRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGR 385
+ R+ SQL TLMD K S +V+V+A+TNR DA
Sbjct: 142 DVRIASQLFTLMDSNKPSSSAPRVVVVASTNRVDA------------------------- 176
Query: 386 KEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDIL 445
I+P + AL E+ + D+ KI ++ K K + +
Sbjct: 177 ------------IDPALRRAGRFDALVEVSTPNEEDRLKILQLYTK--KVNLDPSVD--- 219
Query: 446 REDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAE 505
L +A +G+VGADL AL REA + +R
Sbjct: 220 ------------------LQAIAISCNGYVGADLEALCREATISASKRSS---------- 251
Query: 506 TIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEW 565
+ L +T DF A +V PS R + +E+P V WDD+GGL+D+K++L++AVEW
Sbjct: 252 -------DSLILTSQDFKIAKSVVGPSINRGITVEIPKVTWDDVGGLKDLKKKLQQAVEW 304
Query: 566 PLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGES 625
P+K+ AF ++GI+P +G+LL+GPPG KT LAKA A +QA+F ++ E+ S +VGE
Sbjct: 305 PIKHSAAFVKMGISPMRGILLHGPPGCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEG 364
Query: 626 EKRIREIFRKARQASPAIIFIDEIDAIAPARG---TAEGEKVTDRIINQLLTEMDGLVEN 682
E +R F++AR ASP+IIF DE D +A RG ++ V +R+++ LLTEMDGL E
Sbjct: 365 EALLRNTFQRARLASPSIIFFDEADVVACKRGDESSSNSSTVGERLLSTLLTEMDGLEEA 424
Query: 683 SGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKE 742
G++V+AATNRP +D AL+RPGRFD ++ VP PD +ARFEI +VHTR M L DDVDL++
Sbjct: 425 KGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRNMTLGDDVDLRK 484
Query: 743 LARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALK 802
+A T+ +TGA++ +CRE+ +LR +A + V + F+ A
Sbjct: 485 IAEETDLFTGAELEGLCRESGTVSLRENIA----------------ATAVFNRHFQTAKS 528
Query: 803 KVKPSVTKYMMEYYRQFEESRKR 825
+KP++T +E Y F ++ KR
Sbjct: 529 SLKPALTIEEVETYSSFRKAAKR 551
Score = 189 bits (476), Expect = 9e-47
Identities = 103/241 (42%), Positives = 147/241 (60%), Gaps = 10/241 (4%)
Query: 205 KIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAK 264
+IP+VT++D+GGLK+ +K+++ VE P+KH F ++GI P +G+LL+GPPG KT LAK
Sbjct: 279 EIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTLAK 338
Query: 265 AVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEV 324
A AN A A F +++ E+ S Y GE E LR F+ A +P+IIF DE D +A KR +
Sbjct: 339 AAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADVVACKRGDE 398
Query: 325 VGE----VEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVP 380
V +R++S LLT MDGL+ ++V+AATNRP A+D AL RPGRFD + V P
Sbjct: 399 SSSNSSTVGERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPP 458
Query: 381 DKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEE 440
D + R EILQ+HTR M + D + K E+ D F +++ + + E
Sbjct: 459 DLEARFEILQVHTRNMTLGDD------VDLRKIAEETDLFTGAELEGLCRESGTVSLREN 512
Query: 441 I 441
I
Sbjct: 513 I 513
>dbj|BAA85441.1| (AP000616) EST D15969(C1695) corresponds to a region of the
predicted gene.; similar to valosin-containing protein
(U20213) [Oryza sativa]
Length = 781
Score = 387 bits (983), Expect = e-106
Identities = 247/638 (38%), Positives = 339/638 (52%), Gaps = 125/638 (19%)
Query: 210 TYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 269
T+ D+GG++ IE++ V +PL HPE+ LG++P G+LL+GPPG GKT LA A+ANE
Sbjct: 189 TFSDLGGMESVIEQLMMEVVVPLCHPEVPRWLGVKPVAGLLLHGPPGCGKTTLAHAIANE 248
Query: 270 ANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVE 329
F I+ PE++S G SEE +R +FK+A AP+I+FIDEIDAIA KRE + E+E
Sbjct: 249 TGVPFYKISAPEVVSGVSGASEENIRSLFKKAYRTAPSIVFIDEIDAIASKRENLQREME 308
Query: 330 KRVVSQLLTLMDGL-----------------KSRGKVIVIAATNRPDALDPALRRPGRFD 372
+R+V+QL+T MD K G VIVI ATNRPDA+D ALRRPGRFD
Sbjct: 309 RRIVTQLMTCMDEYHQQIGSGSGDVGSESAEKKPGYVIVIGATNRPDAVDQALRRPGRFD 368
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKV 432
REI + G+P D + ++KI ++
Sbjct: 369 REISL-----------------GVP--------------------DEYARKKILMMLT-- 389
Query: 433 SKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLR 492
RNL +E + L+ ++A T FVGADL AL +A + ++
Sbjct: 390 ----------------RNLRLEGQLDLL-----KIARATSSFVGADLKALVDKAGNLAMK 428
Query: 493 RLI------------KEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIE 540
R+I + K + + +E L +T DF EA KMV+PS RE
Sbjct: 429 RIIDRRRAQFCQEHDENSKHDWWRQPWDANEIEGLSITMDDFEEATKMVQPSLRREGFSS 488
Query: 541 VPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKA 600
+P+V WDD+GGL+ +++E + +K P+ +K G+ G LL+GPPG GKTL+AKA
Sbjct: 489 IPDVTWDDVGGLDSLRKEFDRYIIRCIKQPEEYKTFGLNMQAGFLLFGPPGCGKTLIAKA 548
Query: 601 VATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE 660
VA E+ ANFI I+GPE+L+K+VGESE +R+IF +A+ +P I+F DE
Sbjct: 549 VAHEAGANFIHIKGPELLNKYVGESESEVRKIFIRAQTNTPCILFFDE------------ 596
Query: 661 GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKA 720
LL E+DG E GV VI ATNR D++D A LRPGRF + VP P
Sbjct: 597 -----------LLIELDGAGERKGVFVIGATNRIDVIDDAALRPGRFGKKHYVPLPGADE 645
Query: 721 RFEIFKVHTRGMPLADDVDLKELARRTE--GYTGADIAAV------CREAAMNALRRAVA 772
R I + R P++ VDL LARR E TGAD+A++ EAAM AL +
Sbjct: 646 RVSILRALARNKPISSSVDLGALARREECKNLTGADLASMEPMGHFVNEAAMAALEERL- 704
Query: 773 KLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTK 810
E LE S + FE AL K++PSV++
Sbjct: 705 ----EFLENGESSMSSSSAIELPHFERALAKMQPSVSE 738
Score = 148 bits (369), Expect = 3e-34
Identities = 88/239 (36%), Positives = 124/239 (51%), Gaps = 24/239 (10%)
Query: 206 IPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKA 265
IP+VT++D+GGL ++ + +K PE ++ G+ G LL+GPPG GKTL+AKA
Sbjct: 489 IPDVTWDDVGGLDSLRKEFDRYIIRCIKQPEEYKTFGLNMQAGFLLFGPPGCGKTLIAKA 548
Query: 266 VANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVV 325
VA+EA A FI I GPE+++KY GESE +R+IF A+ N P I+F DE
Sbjct: 549 VAHEAGANFIHIKGPELLNKYVGESESEVRKIFIRAQTNTPCILFFDE------------ 596
Query: 326 GEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGR 385
LL +DG R V VI ATNR D +D A RPGRF ++ V +P R
Sbjct: 597 ----------LLIELDGAGERKGVFVIGATNRIDVIDDAALRPGRFGKKHYVPLPGADER 646
Query: 386 KEILQIHTRGMPIEPDFEKETVIK--ALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIK 442
IL+ R PI + + + K L D E + + + + A EE ++
Sbjct: 647 VSILRALARNKPISSSVDLGALARREECKNLTGADLASMEPMGHFVNEAAMAALEERLE 705
>emb|CAB60418.1| (AL117203) contains similarity to Pfam domain: PF00004 (ATPases
associated with various cellular activities (AAA)),
Score=524.3, E-value=2.9e-154, N=2~cDNA EST yk185f2.3
comes from this gene~cDNA EST yk185f2.5 comes from this
gene~cDNA EST yk269c8.3 co>
Length = 757
Score = 382 bits (971), Expect = e-105
Identities = 239/673 (35%), Positives = 361/673 (53%), Gaps = 134/673 (19%)
Query: 209 VTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVAN 268
V +E IGG ++ + + LK P+ F LG++PP+G +++GPPG GKT+ A+AVA
Sbjct: 147 VKFEHIGGADRQFLEVCRLA-MHLKRPKTFATLGVDPPRGFIVHGPPGCGKTMFAQAVAG 205
Query: 269 EANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEV 328
E + + E++S GE+EE++R +F A++N+P I+ +D+IDAIAP+RE E+
Sbjct: 206 ELAIPMLQLAATELVSGVSGETEEKIRRLFDTAKQNSPCILILDDIDAIAPRRETAQREM 265
Query: 329 EKRVVSQLLTLMDGL-----------------------------KSRGKVIVIAATNRPD 359
E+RVVSQL + +D L + V+VI T+RPD
Sbjct: 266 ERRVVSQLCSSLDELVLPPREKPLKDQLTFGDDGSVAIIGDSPTAAGAGVLVIGTTSRPD 325
Query: 360 ALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDR 419
A+D LRR GRF+ EI +G+PD+ R+
Sbjct: 326 AVDGGLRRAGRFENEISLGIPDETARE--------------------------------- 352
Query: 420 FDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADL 479
KI+EK+ K ++ L ++A++T G+VGADL
Sbjct: 353 -------KILEKICKVNLAGDVT---------------------LKQIAKLTPGYVGADL 384
Query: 480 AALAREAAMVVLRRLI------KEGKINPEAETIPREV---------------LEEL--- 515
AL REAA V + R+ EG N E I E+ L EL
Sbjct: 385 QALIREAAKVAIDRVFDTIVVKNEGHKNLTVEQIKEELDRVLAWLQGDDDPSALSELNGG 444
Query: 516 -KVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFK 574
+++ DF AL ++P+A RE VP+V WDDIG L +V+++L ++ +P+K F
Sbjct: 445 LQISFEDFERALSTIQPAAKREGFATVPDVSWDDIGALVEVRKQLEWSILYPIKRADDFA 504
Query: 575 RLGIT-PPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIF 633
LGI P+G+LL GPPG GKTLLAKAVA E+ NFI+++GPE+L+ +VGESE+ +R +F
Sbjct: 505 ALGIDCRPQGILLCGPPGCGKTLLAKAVANETGMNFISVKGPELLNMYVGESERAVRTVF 564
Query: 634 RKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNR 693
++AR + P +IF DEIDA+ P R E R++NQLLTEMDG+ V +I ATNR
Sbjct: 565 QRARDSQPCVIFFDEIDALVPKRSHGESSGGA-RLVNQLLTEMDGVEGRQKVFLIGATNR 623
Query: 694 PDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG---MPLADDVDLKELARRTE-- 748
PDI+D A+LRPGR D+++ V P + R +I + T+ L +D+D E+A+ E
Sbjct: 624 PDIVDAAILRPGRLDKILFVDFPSVEDRVDILRKSTKNGTRPMLGEDIDFHEIAQLPELA 683
Query: 749 GYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSV 808
G+TGAD+AA+ E+++ AL+ V E+++ +K V + F A +++PSV
Sbjct: 684 GFTGADLAALIHESSLLALQARVL---------ENDESVKG--VGMRHFREAASRIRPSV 732
Query: 809 TKYMMEYYRQFEE 821
T+ + Y ++
Sbjct: 733 TEADRKKYEHMKK 745
Score = 179 bits (449), Expect = 1e-43
Identities = 89/190 (46%), Positives = 128/190 (66%), Gaps = 1/190 (0%)
Query: 206 IPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIE-PPKGVLLYGPPGTGKTLLAK 264
+P+V+++DIG L E +++ + P+K + F LGI+ P+G+LL GPPG GKTLLAK
Sbjct: 471 VPDVSWDDIGALVEVRKQLEWSILYPIKRADDFAALGIDCRPQGILLCGPPGCGKTLLAK 530
Query: 265 AVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEV 324
AVANE FI++ GPE+++ Y GESE +R +F+ A ++ P +IF DEIDA+ PKR
Sbjct: 531 AVANETGMNFISVKGPELLNMYVGESERAVRTVFQRARDSQPCVIFFDEIDALVPKRSHG 590
Query: 325 VGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQG 384
R+V+QLLT MDG++ R KV +I ATNRPD +D A+ RPGR D+ + V P +
Sbjct: 591 ESSGGARLVNQLLTEMDGVEGRQKVFLIGATNRPDIVDAAILRPGRLDKILFVDFPSVED 650
Query: 385 RKEILQIHTR 394
R +IL+ T+
Sbjct: 651 RVDILRKSTK 660
Score = 164 bits (410), Expect = 5e-39
Identities = 110/323 (34%), Positives = 171/323 (52%), Gaps = 58/323 (17%)
Query: 543 NVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVA 602
+V ++ IGG + E+ + LK PK F LG+ PP+G +++GPPG GKT+ A+AVA
Sbjct: 146 HVKFEHIGGADRQFLEVCR-LAMHLKRPKTFATLGVDPPRGFIVHGPPGCGKTMFAQAVA 204
Query: 603 TESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGE 662
E + + E++S GE+E++IR +F A+Q SP I+ +D+IDAIAP R TA+ E
Sbjct: 205 GELAIPMLQLAATELVSGVSGETEEKIRRLFDTAKQNSPCILILDDIDAIAPRRETAQRE 264
Query: 663 KVTDRIINQLLTEMDGLV-----------------------------ENSGVVVIAATNR 693
+ R+++QL + +D LV +GV+VI T+R
Sbjct: 265 -MERRVVSQLCSSLDELVLPPREKPLKDQLTFGDDGSVAIIGDSPTAAGAGVLVIGTTSR 323
Query: 694 PDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGA 753
PD +D L R GRF+ I + PDE AR +I + + + LA DV LK++A+ T GY GA
Sbjct: 324 PDAVDGGLRRAGRFENEISLGIPDETAREKILEKICK-VNLAGDVTLKQIAKLTPGYVGA 382
Query: 754 DIAAVCREAAMNALRRAV----------AKLSPEELEEESEKFLK--------------- 788
D+ A+ REAA A+ R L+ E+++EE ++ L
Sbjct: 383 DLQALIREAAKVAIDRVFDTIVVKNEGHKNLTVEQIKEELDRVLAWLQGDDDPSALSELN 442
Query: 789 -SLIVTRKDFEVALKKVKPSVTK 810
L ++ +DFE AL ++P+ +
Sbjct: 443 GGLQISFEDFERALSTIQPAAKR 465
>pir||T31590 hypothetical protein Y48C3A.h - Caenorhabditis elegans
Length = 856
Score = 382 bits (971), Expect = e-105
Identities = 239/673 (35%), Positives = 361/673 (53%), Gaps = 134/673 (19%)
Query: 209 VTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVAN 268
V +E IGG ++ + + LK P+ F LG++PP+G +++GPPG GKT+ A+AVA
Sbjct: 246 VKFEHIGGADRQFLEVCRLA-MHLKRPKTFATLGVDPPRGFIVHGPPGCGKTMFAQAVAG 304
Query: 269 EANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEV 328
E + + E++S GE+EE++R +F A++N+P I+ +D+IDAIAP+RE E+
Sbjct: 305 ELAIPMLQLAATELVSGVSGETEEKIRRLFDTAKQNSPCILILDDIDAIAPRRETAQREM 364
Query: 329 EKRVVSQLLTLMDGL-----------------------------KSRGKVIVIAATNRPD 359
E+RVVSQL + +D L + V+VI T+RPD
Sbjct: 365 ERRVVSQLCSSLDELVLPPREKPLKDQLTFGDDGSVAIIGDSPTAAGAGVLVIGTTSRPD 424
Query: 360 ALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDR 419
A+D LRR GRF+ EI +G+PD+ R+
Sbjct: 425 AVDGGLRRAGRFENEISLGIPDETARE--------------------------------- 451
Query: 420 FDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADL 479
KI+EK+ K ++ L ++A++T G+VGADL
Sbjct: 452 -------KILEKICKVNLAGDVT---------------------LKQIAKLTPGYVGADL 483
Query: 480 AALAREAAMVVLRRLI------KEGKINPEAETIPREV---------------LEEL--- 515
AL REAA V + R+ EG N E I E+ L EL
Sbjct: 484 QALIREAAKVAIDRVFDTIVVKNEGHKNLTVEQIKEELDRVLAWLQGDDDPSALSELNGG 543
Query: 516 -KVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFK 574
+++ DF AL ++P+A RE VP+V WDDIG L +V+++L ++ +P+K F
Sbjct: 544 LQISFEDFERALSTIQPAAKREGFATVPDVSWDDIGALVEVRKQLEWSILYPIKRADDFA 603
Query: 575 RLGIT-PPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIF 633
LGI P+G+LL GPPG GKTLLAKAVA E+ NFI+++GPE+L+ +VGESE+ +R +F
Sbjct: 604 ALGIDCRPQGILLCGPPGCGKTLLAKAVANETGMNFISVKGPELLNMYVGESERAVRTVF 663
Query: 634 RKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNR 693
++AR + P +IF DEIDA+ P R E R++NQLLTEMDG+ V +I ATNR
Sbjct: 664 QRARDSQPCVIFFDEIDALVPKRSHGESSGGA-RLVNQLLTEMDGVEGRQKVFLIGATNR 722
Query: 694 PDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG---MPLADDVDLKELARRTE-- 748
PDI+D A+LRPGR D+++ V P + R +I + T+ L +D+D E+A+ E
Sbjct: 723 PDIVDAAILRPGRLDKILFVDFPSVEDRVDILRKSTKNGTRPMLGEDIDFHEIAQLPELA 782
Query: 749 GYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSV 808
G+TGAD+AA+ E+++ AL+ V E+++ +K V + F A +++PSV
Sbjct: 783 GFTGADLAALIHESSLLALQARVL---------ENDESVKG--VGMRHFREAASRIRPSV 831
Query: 809 TKYMMEYYRQFEE 821
T+ + Y ++
Sbjct: 832 TEADRKKYEHMKK 844
Score = 179 bits (449), Expect = 1e-43
Identities = 89/190 (46%), Positives = 128/190 (66%), Gaps = 1/190 (0%)
Query: 206 IPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIE-PPKGVLLYGPPGTGKTLLAK 264
+P+V+++DIG L E +++ + P+K + F LGI+ P+G+LL GPPG GKTLLAK
Sbjct: 570 VPDVSWDDIGALVEVRKQLEWSILYPIKRADDFAALGIDCRPQGILLCGPPGCGKTLLAK 629
Query: 265 AVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEV 324
AVANE FI++ GPE+++ Y GESE +R +F+ A ++ P +IF DEIDA+ PKR
Sbjct: 630 AVANETGMNFISVKGPELLNMYVGESERAVRTVFQRARDSQPCVIFFDEIDALVPKRSHG 689
Query: 325 VGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQG 384
R+V+QLLT MDG++ R KV +I ATNRPD +D A+ RPGR D+ + V P +
Sbjct: 690 ESSGGARLVNQLLTEMDGVEGRQKVFLIGATNRPDIVDAAILRPGRLDKILFVDFPSVED 749
Query: 385 RKEILQIHTR 394
R +IL+ T+
Sbjct: 750 RVDILRKSTK 759
Score = 164 bits (410), Expect = 5e-39
Identities = 110/323 (34%), Positives = 171/323 (52%), Gaps = 58/323 (17%)
Query: 543 NVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVA 602
+V ++ IGG + E+ + LK PK F LG+ PP+G +++GPPG GKT+ A+AVA
Sbjct: 245 HVKFEHIGGADRQFLEVCR-LAMHLKRPKTFATLGVDPPRGFIVHGPPGCGKTMFAQAVA 303
Query: 603 TESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGE 662
E + + E++S GE+E++IR +F A+Q SP I+ +D+IDAIAP R TA+ E
Sbjct: 304 GELAIPMLQLAATELVSGVSGETEEKIRRLFDTAKQNSPCILILDDIDAIAPRRETAQRE 363
Query: 663 KVTDRIINQLLTEMDGLV-----------------------------ENSGVVVIAATNR 693
+ R+++QL + +D LV +GV+VI T+R
Sbjct: 364 -MERRVVSQLCSSLDELVLPPREKPLKDQLTFGDDGSVAIIGDSPTAAGAGVLVIGTTSR 422
Query: 694 PDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGA 753
PD +D L R GRF+ I + PDE AR +I + + + LA DV LK++A+ T GY GA
Sbjct: 423 PDAVDGGLRRAGRFENEISLGIPDETAREKILEKICK-VNLAGDVTLKQIAKLTPGYVGA 481
Query: 754 DIAAVCREAAMNALRRAV----------AKLSPEELEEESEKFLK--------------- 788
D+ A+ REAA A+ R L+ E+++EE ++ L
Sbjct: 482 DLQALIREAAKVAIDRVFDTIVVKNEGHKNLTVEQIKEELDRVLAWLQGDDDPSALSELN 541
Query: 789 -SLIVTRKDFEVALKKVKPSVTK 810
L ++ +DFE AL ++P+ +
Sbjct: 542 GGLQISFEDFERALSTIQPAAKR 564
>gb|AAF05624.1| (AF059715) cell survival CED-4-interacting protein MAC-1
[Caenorhabditis elegans]
Length = 813
Score = 376 bits (956), Expect = e-103
Identities = 237/673 (35%), Positives = 356/673 (52%), Gaps = 134/673 (19%)
Query: 209 VTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVAN 268
V +E IGG ++ + + LK P+ F LG++PP+G +++GPPG GKT+ A+AVA
Sbjct: 203 VKFEHIGGADRQFLEVCRLA-MHLKRPKTFATLGVDPPRGFIVHGPPGCGKTMFAQAVAG 261
Query: 269 EANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEV 328
E + + E++S GE+EE++R +F A++N+P I+ +D+IDAIAP+RE E+
Sbjct: 262 ELAIPMLQLAATELVSGVSGETEEKIRRLFDTAKQNSPCILILDDIDAIAPRRETAQREM 321
Query: 329 EKRVVSQLLTLMDGL-----------------------------KSRGKVIVIAATNRPD 359
E+RVVSQL + +D L + V+VI T+RPD
Sbjct: 322 ERRVVSQLCSSLDELVLPPREKPLKDQLTFGDDGSVAIIGDSPTAAGAGVLVIGTTSRPD 381
Query: 360 ALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDR 419
A+D LRR GRF EI +G+PD+ R+
Sbjct: 382 AVDGRLRRTGRFQNEISLGIPDETARE--------------------------------- 408
Query: 420 FDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADL 479
KI+EK+ K ++ L ++A++T G+VGADL
Sbjct: 409 -------KILEKICKVNLAGDVT---------------------LKQIAKLTPGYVGADL 440
Query: 480 AALAREAAMVVLRRLI------KEGKINPEAETIPREV---------------LEEL--- 515
AL REAA V + R+ EG N E I E+ L EL
Sbjct: 441 QALIREAAKVAIDRVFDTIVVKNEGHKNLTVEQIKEELDRVLAWLQGDDDPSALSELNGG 500
Query: 516 -KVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFK 574
+++ DF AL ++P+A RE VP+V WDDIG L +V+++L ++ +P+K F
Sbjct: 501 LQISFEDFERALSTIQPAAKREGFATVPDVSWDDIGALVEVRKQLEWSILYPIKRADDFA 560
Query: 575 RLGIT-PPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIF 633
LGI P+G+LL GPPG GKTLLAKAVA E+ NF +++GPE+L+ +VGESE+ +R +F
Sbjct: 561 ALGIDCRPQGILLCGPPGCGKTLLAKAVANETGMNFFSVKGPELLNMYVGESERAVRTVF 620
Query: 634 RKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNR 693
++AR + P +IF DEIDA+ P R E R++NQLLTEMDG+ V +I ATNR
Sbjct: 621 QRARDSQPCVIFFDEIDALVPKRSHGESSGGA-RLVNQLLTEMDGVEGRQKVFLIGATNR 679
Query: 694 PDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG---MPLADDVDLKELARRTE-- 748
PDI+D A+LRPGR D+++ V P + R +I + T+ L +D+D E+A+ E
Sbjct: 680 PDIVDAAILRPGRLDKILFVDFPSVEDRVDILRKSTKNGTRPMLGEDIDFHEIAQLPELA 739
Query: 749 GYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSV 808
G+TGAD+A E ++ AL+ V E+++ +K V + F A +++PSV
Sbjct: 740 GFTGADLAVFIHELSLLALQARVL---------ENDESVKG--VGMRHFREAASRIRPSV 788
Query: 809 TKYMMEYYRQFEE 821
T+ + Y ++
Sbjct: 789 TEADRKKYEHMKK 801
Score = 177 bits (445), Expect = 4e-43
Identities = 88/190 (46%), Positives = 127/190 (66%), Gaps = 1/190 (0%)
Query: 206 IPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIE-PPKGVLLYGPPGTGKTLLAK 264
+P+V+++DIG L E +++ + P+K + F LGI+ P+G+LL GPPG GKTLLAK
Sbjct: 527 VPDVSWDDIGALVEVRKQLEWSILYPIKRADDFAALGIDCRPQGILLCGPPGCGKTLLAK 586
Query: 265 AVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEV 324
AVANE F ++ GPE+++ Y GESE +R +F+ A ++ P +IF DEIDA+ PKR
Sbjct: 587 AVANETGMNFFSVKGPELLNMYVGESERAVRTVFQRARDSQPCVIFFDEIDALVPKRSHG 646
Query: 325 VGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQG 384
R+V+QLLT MDG++ R KV +I ATNRPD +D A+ RPGR D+ + V P +
Sbjct: 647 ESSGGARLVNQLLTEMDGVEGRQKVFLIGATNRPDIVDAAILRPGRLDKILFVDFPSVED 706
Query: 385 RKEILQIHTR 394
R +IL+ T+
Sbjct: 707 RVDILRKSTK 716
Score = 162 bits (407), Expect = 1e-38
Identities = 110/323 (34%), Positives = 170/323 (52%), Gaps = 58/323 (17%)
Query: 543 NVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVA 602
+V ++ IGG + E+ + LK PK F LG+ PP+G +++GPPG GKT+ A+AVA
Sbjct: 202 HVKFEHIGGADRQFLEVCR-LAMHLKRPKTFATLGVDPPRGFIVHGPPGCGKTMFAQAVA 260
Query: 603 TESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGE 662
E + + E++S GE+E++IR +F A+Q SP I+ +D+IDAIAP R TA+ E
Sbjct: 261 GELAIPMLQLAATELVSGVSGETEEKIRRLFDTAKQNSPCILILDDIDAIAPRRETAQRE 320
Query: 663 KVTDRIINQLLTEMDGLV-----------------------------ENSGVVVIAATNR 693
+ R+++QL + +D LV +GV+VI T+R
Sbjct: 321 -MERRVVSQLCSSLDELVLPPREKPLKDQLTFGDDGSVAIIGDSPTAAGAGVLVIGTTSR 379
Query: 694 PDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGA 753
PD +D L R GRF I + PDE AR +I + + + LA DV LK++A+ T GY GA
Sbjct: 380 PDAVDGRLRRTGRFQNEISLGIPDETAREKILEKICK-VNLAGDVTLKQIAKLTPGYVGA 438
Query: 754 DIAAVCREAAMNALRRAV----------AKLSPEELEEESEKFLK--------------- 788
D+ A+ REAA A+ R L+ E+++EE ++ L
Sbjct: 439 DLQALIREAAKVAIDRVFDTIVVKNEGHKNLTVEQIKEELDRVLAWLQGDDDPSALSELN 498
Query: 789 -SLIVTRKDFEVALKKVKPSVTK 810
L ++ +DFE AL ++P+ +
Sbjct: 499 GGLQISFEDFERALSTIQPAAKR 521
>pir||A70632 hypothetical protein Rv0435c - Mycobacterium tuberculosis (strain
H37RV) >gi|1817701|emb|CAB06575.1| (Z84724) hypothetical
protein Rv0435c [Mycobacterium tuberculosis]
Length = 728
Score = 360 bits (915), Expect = 3e-98
Identities = 254/780 (32%), Positives = 386/780 (48%), Gaps = 105/780 (13%)
Query: 24 DVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDRGLDIIRMDGYIRKNA 83
D RG+VR +G+ D V + G R TAA VA D + + +D NA
Sbjct: 22 DSRRGVVRLHPNAIAALGIREWDAVSLTGSRTTAA-VAGLAAADTAVGTVLLDDVTLSNA 80
Query: 84 GVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGDIVKNNLLGRPVVKGDIIVASGRS 143
G+ G V + V A+ V L+ + +P ++ LLG+ + GD + R
Sbjct: 81 GLREGTEVIVSPVTVYGARSVTLSGSTLAT-QSVPPVTLRQALLGKVMTVGDAVSLLPRD 139
Query: 144 EMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQITYNTEVEV---LPQAVE 200
GT R A+ + + V P G V + N+ V +P A+
Sbjct: 140 ---LGPGTSTSAASRALAAAVGISWTSELLTVTGVDPDGPVSVQPNSLVTWGAGVPAAMG 196
Query: 201 VREE-----KIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPP 255
PE+ E++ G + K+ E ++L L P L + LG GVL+ GP
Sbjct: 197 TSTAGQVSISSPEIQIEELKGAQPQAAKLTEWLKLALDEPHLLQTLGAGTNLGVLVSGPA 256
Query: 256 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEID 315
G GK L +AV + + ++GPEI + G+ + + +A + ++ I + D
Sbjct: 257 GVGKATLVRAVCDGRR--LVTLDGPEIGALAAGDRVKAVASAV-QAVRHEGGVLLITDAD 313
Query: 316 AIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREI 375
A+ P E V + ++S+L T + + V++IA + RPD LD LR P DRE+
Sbjct: 314 ALLPAAAEPVASL---ILSELRTAV----ATAGVVLIATSARPDQLDARLRSPELCDREL 366
Query: 376 EVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKA 435
G+P+ ++++++AL
Sbjct: 367 -------------------GLPLPDAATRKSLLEAL------------------------ 383
Query: 436 KSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLI 495
+ + D NL DE+A T GFV ADLAAL REAA+ R
Sbjct: 384 -----LNPVPTGDLNL-------------DEIASRTPGFVVADLAALVREAALRAASRAS 425
Query: 496 KEGKINPEAETIPREVLEELKVTKADFYEALKMVEP---SALREVLIEVPNVHWDDIGGL 552
+G+ P + ++ D AL ++ P SA EV V +V DD+G +
Sbjct: 426 ADGR--------PPMLHQD------DLLGALTVIRPLSRSASDEVT--VGDVTLDDVGDM 469
Query: 553 EDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAI 612
KQ L EAV WPL++P F RLG+ PP+GVLLYGPPG GKT + +A+A+ Q + A+
Sbjct: 470 AAAKQALTEAVLWPLQHPDTFARLGVEPPRGVLLYGPPGCGKTFVVRALASTGQLSVHAV 529
Query: 613 RGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQL 672
+G E++ KWVG SEK +RE+FR+AR ++P+++F+DE+DA+AP RG + V+DR++ L
Sbjct: 530 KGSELMDKWVGSSEKAVRELFRRARDSAPSLVFLDELDALAPRRGQSFDSGVSDRVVAAL 589
Query: 673 LTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGM 732
LTE+DG+ VV++ ATNRPD++DPALLRPGR +RL+ V PD AR EI + + +
Sbjct: 590 LTELDGIDPLRDVVMLGATNRPDLIDPALLRPGRLERLVFVEPPDAAARREILRTAGKSI 649
Query: 733 PLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAV--AKLSPEELEEESEKFLKSL 790
PL+ DVDL E+A +GY+ AD A+ REAA+ A+RR++ A ++ +L E SL
Sbjct: 650 PLSSDVDLDEVAAGLDGYSAADCVALLREAALTAMRRSIDAANVTAADLATARETVRASL 709
Score = 111 bits (276), Expect = 2e-23
Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 14/263 (5%)
Query: 532 SALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPG 591
S +V I P + +++ G + +L E ++ L P + LG GVL+ GP G
Sbjct: 198 STAGQVSISSPEIQIEELKGAQPQAAKLTEWLKLALDEPHLLQTLGAGTNLGVLVSGPAG 257
Query: 592 TGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDA 651
GK L +AV + + + GPE+ + G+ K + + R ++ I + DA
Sbjct: 258 VGKATLVRAVCDGRR--LVTLDGPEIGALAAGDRVKAVASAVQAVRHEG-GVLLITDADA 314
Query: 652 IAPARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLI 711
+ PA + + + +L+E+ V +GVV+IA + RPD LD L P DR +
Sbjct: 315 LLPA--------AAEPVASLILSELRTAVATAGVVLIATSARPDQLDARLRSPELCDREL 366
Query: 712 LVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAV 771
+P PD R + + +P D++L E+A RT G+ AD+AA+ REAA+ A RA
Sbjct: 367 GLPLPDAATRKSLLEALLNPVP-TGDLNLDEIASRTPGFVVADLAALVREAALRAASRAS 425
Query: 772 AKLSPEELEEESEKFLKSLIVTR 794
A P L ++ L +L V R
Sbjct: 426 ADGRPPMLHQDD--LLGALTVIR 446
>pir||T46437 hypothetical protein DKFZp434K0126.1 - human (fragment)
>gi|6807907|emb|CAB70717.1| (AL137377) hypothetical
protein [Homo sapiens]
Length = 431
Score = 360 bits (913), Expect = 5e-98
Identities = 190/390 (48%), Positives = 260/390 (65%), Gaps = 16/390 (4%)
Query: 458 KLIDKL-LDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELK 516
KL D + L+++A THG VGADLAAL EAA+ +R+ K I+ E ETI EV+ L
Sbjct: 14 KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK--KMDLIDLEDETIDAEVMNSLA 71
Query: 517 VTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRL 576
VT DF AL PSALRE ++EVP V W+DIGGLEDVK+EL+E V++P+++P F +
Sbjct: 72 VTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF 131
Query: 577 GITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA 636
G+TP KGVL YGPPG GKTLLAKA+A E QANFI+I+GPE+L+ W GESE +REIF KA
Sbjct: 132 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 191
Query: 637 RQASPAIIFIDEIDAIAPARG--TAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRP 694
RQA+P ++F DE+D+IA ARG +G DR+INQ+LTEMDG+ V +I ATNRP
Sbjct: 192 RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 251
Query: 695 DILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGAD 754
DI+DPA+LRPGR D+LI +P PDEK+R I K + R P+A DVDL+ LA+ T G++GAD
Sbjct: 252 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGAD 311
Query: 755 IAAVCREAAMNALRRAV---------AKLSPEELEEESEKFLKSLIVTRKDFEVALKKVK 805
+ +C+ A A+R ++ + +P +E E + + + R FE A++ +
Sbjct: 312 LTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPE--IRRDHFEEAMRFAR 369
Query: 806 PSVTKYMMEYYRQFEESRKRMVGESTGREP 835
SV+ + Y F ++ ++ G + R P
Sbjct: 370 RSVSDNDIRKYEMFAQTLQQSRGFGSFRFP 399
Score = 219 bits (551), Expect = 1e-55
Identities = 107/257 (41%), Positives = 167/257 (64%), Gaps = 9/257 (3%)
Query: 196 PQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPP 255
P A+ ++P+VT+EDIGGL++ +++E+V+ P++HP+ F + G+ P KGVL YGPP
Sbjct: 86 PSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPP 145
Query: 256 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEID 315
G GKTLLAKA+ANE A FI+I GPE+++ ++GESE +REIF +A + AP ++F DE+D
Sbjct: 146 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 205
Query: 316 AIAPKREEVVGE---VEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFD 372
+IA R +G+ RV++Q+LT MDG+ ++ V +I ATNRPD +DPA+ RPGR D
Sbjct: 206 SIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLD 265
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKV 432
+ I + +PD++ R IL+ + R P+ D + E + K + F + +I ++
Sbjct: 266 QLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK------MTNGFSGADLTEICQRA 319
Query: 433 SKAKSEEEIKDILREDR 449
K E I+ +R +R
Sbjct: 320 CKLAIRESIESEIRRER 336
Score = 78.8 bits (191), Expect = 2e-13
Identities = 41/92 (44%), Positives = 61/92 (65%), Gaps = 5/92 (5%)
Query: 721 RFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELE 780
R EI ++HT+ M LADDVDL+++A T G+ GAD+AA+C EAA+ A+R+ K+ +LE
Sbjct: 2 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK---KMDLIDLE 58
Query: 781 EES--EKFLKSLIVTRKDFEVALKKVKPSVTK 810
+E+ + + SL VT DF AL + PS +
Sbjct: 59 DETIDAEVMNSLAVTMDDFRWALSQSNPSALR 90
>pir||T11652 probable transitional endoplasmic reticulum ATPase - fission yeast
(Schizosaccharomyces pombe) (fragment)
>gi|2330848|emb|CAB11085.1| (Z98533) transitional
endoplasmic reticulum atpase [Schizosaccharomyces pombe]
Length = 432
Score = 341 bits (865), Expect = 2e-92
Identities = 173/329 (52%), Positives = 236/329 (71%), Gaps = 8/329 (2%)
Query: 458 KLIDKL-LDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELK 516
KL D + L+++A THG+VG+DLA+L EAAM +R K I+ + + I EVL+ L
Sbjct: 26 KLADDVDLEQIAAETHGYVGSDLASLCSEAAMQQIRE--KMDMIDLDEDEIDAEVLDSLG 83
Query: 517 VTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRL 576
VT +F AL PSALRE ++EVPNV W+DIGGLE+VK+ELRE V+ P+ Y + F R
Sbjct: 84 VTMDNFRFALGSSNPSALRETVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRF 143
Query: 577 GITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA 636
G+TP KGVL +GPPGTGKTLLAKA+A E ANFI+++GPE+LS W GESE +R+IF KA
Sbjct: 144 GVTPSKGVLFFGPPGTGKTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKA 203
Query: 637 RQASPAIIFIDEIDAIAPARGTAEGEK-VTDRIINQLLTEMDGLVENSGVVVIAATNRPD 695
R A+P ++F+DE+D+IA ARG + G+ DR++NQLLTEMDG+ V VI ATNRPD
Sbjct: 204 RAAAPCVVFLDELDSIAKARGASAGDSGGGDRVVNQLLTEMDGVNSKKNVFVIGATNRPD 263
Query: 696 ILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADI 755
+DPAL+RPGR D+LI VP PDE+ARF I + R P+A+DVDL+ +A+ T G++GAD+
Sbjct: 264 QIDPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKATHGFSGADL 323
Query: 756 AAVCREAAMNALRRAVAKLSPEELEEESE 784
V + A A++ ++ E+++ E+E
Sbjct: 324 EFVVQRAVKLAIKDSI----EEDIKRENE 348
Score = 220 bits (555), Expect = 5e-56
Identities = 125/308 (40%), Positives = 184/308 (59%), Gaps = 19/308 (6%)
Query: 196 PQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPP 255
P A+ ++P V +EDIGGL+E ++RE V++P+ + E F R G+ P KGVL +GPP
Sbjct: 98 PSALRETVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPP 157
Query: 256 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEID 315
GTGKTLLAKA+ANE +A FI++ GPE++S ++GESE +R+IF +A AP ++F+DE+D
Sbjct: 158 GTGKTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDELD 217
Query: 316 AIAPKREEVVGEV--EKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDR 373
+IA R G+ RVV+QLLT MDG+ S+ V VI ATNRPD +DPAL RPGR D+
Sbjct: 218 SIAKARGASAGDSGGGDRVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQ 277
Query: 374 EIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVS 433
I V +PD++ R ILQ R P+ D + V KA F ++ ++++
Sbjct: 278 LIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKA------THGFSGADLEFVVQRAV 331
Query: 434 KAKSEEEI-KDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLR 492
K ++ I +DI RE+ D ++DE A V + + E AM + R
Sbjct: 332 KLAIKDSIEEDIKRENET----GEAPADDVVMDEDASV------SQVQRHHVEEAMKMAR 381
Query: 493 RLIKEGKI 500
R + + ++
Sbjct: 382 RSVSDAEV 389
Score = 83.1 bits (202), Expect = 1e-14
Identities = 44/103 (42%), Positives = 63/103 (60%), Gaps = 1/103 (0%)
Query: 708 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNAL 767
DR + V PD R EI ++HT+ M LADDVDL+++A T GY G+D+A++C EAAM +
Sbjct: 1 DREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGYVGSDLASLCSEAAMQQI 60
Query: 768 RRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTK 810
R + + +E E ++E L SL VT +F AL PS +
Sbjct: 61 REKMDMIDLDEDEIDAE-VLDSLGVTMDNFRFALGSSNPSALR 102
>gb|AAG19767.1| (AE005062) cell division cycle protein; Cdc48a [Halobacterium sp.
NRC-1]
Length = 691
Score = 321 bits (814), Expect = 2e-86
Identities = 252/796 (31%), Positives = 376/796 (46%), Gaps = 141/796 (17%)
Query: 25 VGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDR---------GLDIIRM 75
VG G + F + ++ IGV GD V + G T A V PD G D++R
Sbjct: 21 VGPGQLSFTAETRQQIGVAEGDAVTVTGSEDTVATVG---PDTTAIAASSGLAGADVLR- 76
Query: 76 DGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGDIVKNNLLGRPVVKGD 135
N G T D VT+ A+ A ++ +APA + + D + L GR +V D
Sbjct: 77 ------NVGPT--DTVTVAPADPSPAAELTVAPATSSTL-EGDADALARALAGRHLVADD 127
Query: 136 IIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQITYNTEVEVL 195
I SGT + V +T P G V +T +T + +
Sbjct: 128 RIAVP------LFSGTVV-----------------VTLDVEDTTPGGPVTVTADTAITLT 164
Query: 196 PQAVEVREEKIPEVTYED--IGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYG 253
A + T D +GGL + +R +V PL + + +G+ PP GVL++G
Sbjct: 165 GHAADSGHADAEHATPADTRVGGLDDERGALRRLVVAPLV-ADSYAAIGVRPPAGVLVHG 223
Query: 254 PPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPA-IIFID 312
P GTGKT L +AVA A+ +A+ E ++ + L + A + P ++F++
Sbjct: 224 PAGTGKTTLVRAVAAAAD---LAV---ESVAPEDAGDRDALAAVLDAARDAEPGCVVFVE 277
Query: 313 EIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFD 372
+ A AP DG RG P AL L R D
Sbjct: 278 SLAAAAPD-----------------PTADGASGRGS---------PSALGWLLDRVRGHD 311
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKV 432
+ VG +PD V AL+ + RFD E + V
Sbjct: 312 TVVVVGETT-----------------DPD----AVDPALR---RGGRFDAE----VRVGV 343
Query: 433 SKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLR 492
+ I D+ + L V LD +A+ THG+ GADL A+ +AA
Sbjct: 344 PDPAARRAILDVHTDGVRLADAVS-------LDAVADRTHGYTGADLTAVLVDAAT---- 392
Query: 493 RLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGL 552
+ A P + + D AL V PS LR+ ++ P + DIGGL
Sbjct: 393 ------RAAGSAAGPP-------VIRQRDLEAALDAVGPSTLRDASVQTPTTTYQDIGGL 439
Query: 553 EDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAI 612
+ K+E+ VEWP +YP F+RL P GVLL+GPPGTGKT+LAKAVA + ANF+++
Sbjct: 440 DRAKREVVRTVEWPQRYPALFERLDAAAPTGVLLHGPPGTGKTMLAKAVAASTDANFLSV 499
Query: 613 RGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQL 672
GPE+++++VGESE+ +R++F +AR+ +PA++F+DE+D++APAR + ++R+++QL
Sbjct: 500 DGPELMNRYVGESERGVRDLFERARRLAPAVVFLDEVDSLAPARHDTD-TGASERVVSQL 558
Query: 673 LTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGM 732
LTE+DGL V V+AATNR + +DPALLRPGR + + VP PD+ AR IF+V G+
Sbjct: 559 LTELDGLSPRGSVAVLAATNRRESVDPALLRPGRIETQVAVPIPDQDARAAIFEVQLDGV 618
Query: 733 PLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIV 792
+D LA T GYTG+DIA V RE A+ A+ + + + + L+V
Sbjct: 619 -ATGRIDTTALAAATTGYTGSDIAGVVREGALLAMEDHLRETEFDATD------ASGLVV 671
Query: 793 TRKDFEVALKKVKPSV 808
T++ A++ PSV
Sbjct: 672 TQRHLRRAIETTAPSV 687
Score = 131 bits (327), Expect = 3e-29
Identities = 95/265 (35%), Positives = 136/265 (50%), Gaps = 30/265 (11%)
Query: 549 IGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQAN 608
+GGL+D + LR V PL ++ +G+ PP GVL++GP GTGKT L +AVA +
Sbjct: 185 VGGLDDERGALRRLVVAPL-VADSYAAIGVRPPAGVLVHGPAGTGKTTLVRAVAAAAD-- 241
Query: 609 FIAIRGPEVLSKWVGESEKRIREIFRKARQASPA-IIFIDEIDAIAPARGTAEGE--KVT 665
+A+ V + G+ + + + AR A P ++F++ + A AP TA+G + +
Sbjct: 242 -LAVES--VAPEDAGDRDA-LAAVLDAARDAEPGCVVFVESLAAAAPDP-TADGASGRGS 296
Query: 666 DRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIF 725
+ LL + G + VVV+ T PD +DPAL R GRFD + V PD AR I
Sbjct: 297 PSALGWLLDRVRG---HDTVVVVGETTDPDAVDPALRRGGRFDAEVRVGVPDPAARRAIL 353
Query: 726 KVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEK 785
VHT G+ LAD V L +A RT GYTGAD+ AV +AA A A
Sbjct: 354 DVHTDGVRLADAVSLDAVADRTHGYTGADLTAVLVDAATRAAGSAAG------------- 400
Query: 786 FLKSLIVTRKDFEVALKKVKPSVTK 810
++ ++D E AL V PS +
Sbjct: 401 ---PPVIRQRDLEAALDAVGPSTLR 422
>gb|AAG29874.1| (AF313486) valosin-containing protein [Homo sapiens]
Length = 305
Score = 313 bits (793), Expect = 6e-84
Identities = 159/280 (56%), Positives = 203/280 (71%), Gaps = 5/280 (1%)
Query: 458 KLIDKL-LDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELK 516
KL D + L+++A THG VGADLAAL EAA+ +R+ K I+ E ETI EV+ L
Sbjct: 17 KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK--KMDLIDLEDETIDAEVMNSLA 74
Query: 517 VTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRL 576
T DF AL PSALRE ++EVP V W+DIGGLEDVK+EL+E V++P+++P F +
Sbjct: 75 ATMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF 134
Query: 577 GITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA 636
G+TP KGVL YGPPG GKTLLAKA+A E QANFI+I+GPE+L+ W GESE +REIF KA
Sbjct: 135 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 194
Query: 637 RQASPAIIFIDEIDAIAPARG--TAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRP 694
RQA+P ++F DE+D+IA ARG +G DR+INQ+LTEMDG+ V +I ATNRP
Sbjct: 195 RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 254
Query: 695 DILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPL 734
DI+DPA+LRPGR D+LI +P PDEK+R I K + R P+
Sbjct: 255 DIIDPAILRPGRPDQLIYIPLPDEKSRVAILKANLRKSPV 294
Score = 208 bits (524), Expect = 2e-52
Identities = 97/206 (47%), Positives = 147/206 (71%), Gaps = 3/206 (1%)
Query: 196 PQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPP 255
P A+ ++P+VT+EDIGGL++ +++E+V+ P++HP+ F + G+ P KGVL YGPP
Sbjct: 89 PSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPP 148
Query: 256 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEID 315
G GKTLLAKA+ANE A FI+I GPE+++ ++GESE +REIF +A + AP ++F DE+D
Sbjct: 149 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 208
Query: 316 AIAPKREEVVGE---VEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFD 372
+IA R +G+ RV++Q+LT MDG+ ++ V +I ATNRPD +DPA+ RPGR D
Sbjct: 209 SIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRPD 268
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPI 398
+ I + +PD++ R IL+ + R P+
Sbjct: 269 QLIYIPLPDEKSRVAILKANLRKSPV 294
Score = 78.8 bits (191), Expect = 2e-13
Identities = 41/96 (42%), Positives = 61/96 (62%), Gaps = 5/96 (5%)
Query: 717 DEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSP 776
D R EI ++HT+ M LADDVDL+++A T G+ GAD+AA+C EAA+ A+R+ K+
Sbjct: 1 DATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK---KMDL 57
Query: 777 EELEEES--EKFLKSLIVTRKDFEVALKKVKPSVTK 810
+LE+E+ + + SL T DF AL + PS +
Sbjct: 58 IDLEDETIDAEVMNSLAATMDDFRWALSQSNPSALR 93
>emb|CAB99275.1| (AL390274) yeast cdc48 homologue; transitional endoplasmic
reticulum atpase [Schizosaccharomyces pombe]
Length = 418
Score = 305 bits (773), Expect = 1e-81
Identities = 167/370 (45%), Positives = 236/370 (63%), Gaps = 35/370 (9%)
Query: 45 GDIVEIEGERITAAIVANPHPDDRGLDIIRMDGYIRKNAGVTIGDFVTIRRA-EVKEAKK 103
GD V ++G+R ++ ++ + R++ +R N V +GD VTI ++K A++
Sbjct: 74 GDTVVVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAER 133
Query: 104 VVLAPAQKGVIVQIPGDIVKNNLLG------RPVVKGDIIVASGRSEMYYSSGTPFDEIF 157
+ + P + + G + L RP+ KGD+ V G
Sbjct: 134 ISVLPLAD-TVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGSMR------------- 179
Query: 158 RGFFEAMSVGFGELKFMVVNTIPKGIVQITYNTEV--EVLPQAVEVREEKIPEVTYEDIG 215
+++F VV+ P ++ +T + E P E E + EV Y+DIG
Sbjct: 180 ------------QVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSLAEVGYDDIG 227
Query: 216 GLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFI 275
G + + +IRE+VELPL+HP+LF+ +GI+PP+G+L+YGPPGTGKTL+A+AVANE A+F
Sbjct: 228 GCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANETGAFFF 287
Query: 276 AINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQ 335
INGPEIMSK GESE LR+ F+EAE+N+PAIIFIDEID+IAPKRE+ GEVE+RVVSQ
Sbjct: 288 LINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVERRVVSQ 347
Query: 336 LLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRG 395
LLTLMDG+K+R V+V+AATNRP+++DPALRR GRFDRE++VG+PD GR EIL+IHT+
Sbjct: 348 LLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKN 407
Query: 396 MPIEPDFEKE 405
M + D + E
Sbjct: 408 MKLADDVDLE 417
Score = 228 bits (574), Expect = 3e-58
Identities = 115/213 (53%), Positives = 150/213 (69%), Gaps = 1/213 (0%)
Query: 530 EPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGP 589
EP + + V +DDIGG ++RE VE PL++P+ FK +GI PP+G+L+YGP
Sbjct: 207 EPINREDEESSLAEVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGP 266
Query: 590 PGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEI 649
PGTGKTL+A+AVA E+ A F I GPE++SK GESE +R+ F +A + SPAIIFIDEI
Sbjct: 267 PGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEI 326
Query: 650 DAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDR 709
D+IAP R GE V R+++QLLT MDG+ S VVV+AATNRP+ +DPAL R GRFDR
Sbjct: 327 DSIAPKREKTNGE-VERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDR 385
Query: 710 LILVPAPDEKARFEIFKVHTRGMPLADDVDLKE 742
+ V PD R EI ++HT+ M LADDVDL++
Sbjct: 386 EVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQ 418
>gb|AAK42941.1| AAA family ATPase [Sulfolobus solfataricus]
Length = 585
Score = 300 bits (761), Expect = 3e-80
Identities = 207/620 (33%), Positives = 320/620 (51%), Gaps = 97/620 (15%)
Query: 206 IPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKA 265
IP + ++++ LK+ ++ E+ ++ + GV+L+GPPGTGKT +AKA
Sbjct: 62 IPNIRWDEVYDLKDVKMRLEEIAKIVQEGRAY----------GVILFGPPGTGKTTIAKA 111
Query: 266 VANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVV 325
+AN+ + + +I+SK+YGESE L F + E N PA++FIDE+D++A R+ +
Sbjct: 112 LANKLGWAYFELRPSKILSKWYGESELLLDSFFDQVEINTPAVVFIDELDSLAMSRQSDL 171
Query: 326 GEVEKRVVSQLLTLMDGLKSRG-KVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQG 384
EV R+V+ +L + L + +VI+I ATN P +D A RPGRFD I V +PD++
Sbjct: 172 HEVTHRLVNIMLMRLQDLHDKNLRVIIIGATNVPQEIDEAFLRPGRFDEVIYVALPDEKS 231
Query: 385 RKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDI 444
R+EI +G D + + K K +RF IK + +K +
Sbjct: 232 REEIW----KGYIKREDIDYSLLAK------KSERFSPADIKNVADK------------V 269
Query: 445 LREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEA 504
+ ++ +L E D L E+ + L+ + +
Sbjct: 270 ISKNNSLKTE----------DFLREIENYKPSIQLSTIIK-------------------F 300
Query: 505 ETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVE 564
E I R+ YE K++ + +PN+ W+D+G LE+VK+ +RE++
Sbjct: 301 ENIARK------------YERSKLIIKT------YGIPNISWNDLGDLEEVKRIIRESIV 342
Query: 565 WPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGE 624
P+ + ++LGI P KG+LLYGPPGTGKT +AKA+A + + NFI + G EV +
Sbjct: 343 LPITNKEFAEKLGIYPVKGILLYGPPGTGKTSIAKALANDLRFNFIELSGEEVSGAGPLD 402
Query: 625 SEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSG 684
+ K I E F A +PAIIFIDEID IA R T E + +LL +MDGL E
Sbjct: 403 APKIIAEKFYIALDNAPAIIFIDEIDMIARNRMTNEWRNA----LTELLRQMDGLREIHN 458
Query: 685 VVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELA 744
V+V+ ATNRP LDPA+LR GRFD++I VP PD+ R +I +V + + + ++ + ++A
Sbjct: 459 VIVVGATNRPWDLDPAILRAGRFDKIIYVPPPDKDGREKILQVLIKDLIINRNI-ISKVA 517
Query: 745 RRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKV 804
TE YT AD+ V E N L+ A +S E V +DF LK+V
Sbjct: 518 ELTENYTPADLKLVVEEVKRNLLKE--ASISGNLRTE----------VKLEDFMDVLKRV 565
Query: 805 KPSVTKYMMEYYRQFEESRK 824
K S+ + + Y +F R+
Sbjct: 566 KASLDRQTLIMYEKFGFERR 585
Score = 157 bits (393), Expect = 5e-37
Identities = 100/278 (35%), Positives = 159/278 (56%), Gaps = 28/278 (10%)
Query: 535 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGK 594
R+ I +PN+ WD++ L+DVK L E + ++ +A+ GV+L+GPPGTGK
Sbjct: 56 RKPKIHIPNIRWDEVYDLKDVKMRLEEIAKI-VQEGRAY---------GVILFGPPGTGK 105
Query: 595 TLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAP 654
T +AKA+A + + +R ++LSKW GESE + F + +PA++FIDE+D++A
Sbjct: 106 TTIAKALANKLGWAYFELRPSKILSKWYGESELLLDSFFDQVEINTPAVVFIDELDSLAM 165
Query: 655 ARGTAEGEKVTDRIINQLLTEMDGLVE-NSGVVVIAATNRPDILDPALLRPGRFDRLILV 713
+R ++ +VT R++N +L + L + N V++I ATN P +D A LRPGRFD +I V
Sbjct: 166 SR-QSDLHEVTHRLVNIMLMRLQDLHDKNLRVIIIGATNVPQEIDEAFLRPGRFDEVIYV 224
Query: 714 PAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAK 773
PDEK+R EI+K G +D+D LA+++E ++ ADI N + ++K
Sbjct: 225 ALPDEKSREEIWK----GYIKREDIDYSLLAKKSERFSPADI--------KNVADKVISK 272
Query: 774 ---LSPEELEEESEKFLKSL-IVTRKDFEVALKKVKPS 807
L E+ E E + S+ + T FE +K + S
Sbjct: 273 NNSLKTEDFLREIENYKPSIQLSTIIKFENIARKYERS 310
>pir||T23322 hypothetical protein K04G2.3 - Caenorhabditis elegans
>gi|3878262|emb|CAB00040.1| (Z75712) contains similarity
to Pfam domain: PF00004 (ATPases associated with various
cellular activities (AAA)), Score=305.8,
E-value=1.6e-88, N=1~cDNA EST yk353e8.5 comes from this
gene [Caenorhabditis elegans]
Length = 724
Score = 300 bits (759), Expect = 6e-80
Identities = 170/422 (40%), Positives = 252/422 (59%), Gaps = 48/422 (11%)
Query: 403 EKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDK 462
EK+ VI ++ E D +++ IE +++E DIL + N+Y +
Sbjct: 346 EKKCVILCVRSSETLDI--GFRVRFPIEAEITVPTQDERLDILSKIGNIY-----NFPLE 398
Query: 463 LLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADF 522
L ++A THGF G DL +L + A R ++ ++N
Sbjct: 399 LHLDVARHTHGFTGGDLCSLLKAAKFARGRTHLE--RVN--------------------- 435
Query: 523 YEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPK 582
+A K + P+ +R+ ++EVPNV W+DIGG E++K E+++AV WP K+P+AF+R GI PP
Sbjct: 436 -DARKRIRPTGIRQFILEVPNVSWNDIGGNEELKLEIQQAVIWPQKHPEAFERFGIDPPA 494
Query: 583 GVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPA 642
G+LLYGPPG KTL+A+A+A+E++ NF+A++GPE+ SKWVG+SEK IR++F +ARQ +P
Sbjct: 495 GILLYGPPGCSKTLIARALASEAKMNFLAVKGPELFSKWVGDSEKAIRDLFSRARQVAPT 554
Query: 643 IIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALL 702
I+F DEIDA+ +RG+ + V+DR++ QLLTE+DGL ++S V+++AATNRPD LD ALL
Sbjct: 555 IVFFDEIDAVGSSRGSEKSSGVSDRVLAQLLTELDGLEKSSRVILLAATNRPDQLDSALL 614
Query: 703 RPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDV-DLKELARRTEGYTGADIAAVCRE 761
RPGR DR I V P E R I ++ T+ M D V + +L +T GY+GA++ AVCR
Sbjct: 615 RPGRLDRAIYVGLPCEVTRRAILEMRTKKMKFDDTVRTIDKLVEKTSGYSGAELVAVCRT 674
Query: 762 AAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEE 821
AAM A+R ++ + IV FE AL V Y++E Y F+
Sbjct: 675 AAMFAMRESI----------------DATIVQWTHFEQALAAVVSRTEAYLLEIYDDFKA 718
Query: 822 SR 823
R
Sbjct: 719 GR 720
Score = 203 bits (512), Expect = 5e-51
Identities = 106/238 (44%), Positives = 153/238 (63%), Gaps = 6/238 (2%)
Query: 205 KIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAK 264
++P V++ DIGG +E +I++ V P KHPE FER GI+PP G+LLYGPPG KTL+A+
Sbjct: 452 EVPNVSWNDIGGNEELKLEIQQAVIWPQKHPEAFERFGIDPPAGILLYGPPGCSKTLIAR 511
Query: 265 AVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR-EE 323
A+A+EA F+A+ GPE+ SK+ G+SE+ +R++F A + AP I+F DEIDA+ R E
Sbjct: 512 ALASEAKMNFLAVKGPELFSKWVGDSEKAIRDLFSRARQVAPTIVFFDEIDAVGSSRGSE 571
Query: 324 VVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQ 383
V RV++QLLT +DGL+ +VI++AATNRPD LD AL RPGR DR I VG+P +
Sbjct: 572 KSSGVSDRVLAQLLTELDGLEKSSRVILLAATNRPDQLDSALLRPGRLDRAIYVGLPCEV 631
Query: 384 GRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEI 441
R+ IL++ T+ M + +TV K +EK + ++ + + E I
Sbjct: 632 TRRAILEMRTKKMKFD-----DTVRTIDKLVEKTSGYSGAELVAVCRTAAMFAMRESI 684
>sp|Q58576|PRS1_METJA PROTEASOME-ACTIVATING NUCLEOTIDASE (PAN) (26S PROTEASE REGULATORY
SUBUNIT HOMOLOG) >gi|2127779|pir||G64446 ATP-dependent
26S proteosome regulatory subunit 4 homolog -
Methanococcus jannaschii >gi|1591803|gb|AAB99179.1|
(U67559) proteasome regulatory AAA-ATPase [Methanococcus
jannaschii]
Length = 430
Score = 289 bits (731), Expect = 1e-76
Identities = 168/392 (42%), Positives = 245/392 (61%), Gaps = 15/392 (3%)
Query: 413 ELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTH 472
+L K++ +K +I ++ ++ K + E+ K++ RE NL + +++ + LD + V
Sbjct: 37 DLLKEELQEKARIAELESRILKLELEK--KELERE--NLQLMKENEILRRELDRM-RVPP 91
Query: 473 GFVGADLAALAREAAMVVLRR----LIKEGK-INPEAETIPREV-LEELKVTKADFYEAL 526
VG + + +V L+ +NP+ + V L + +T D
Sbjct: 92 LIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPEN 151
Query: 527 KMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLL 586
K A+ + E PNV ++DIGGLE QE+RE VE PLK+P+ F+++GI PPKG+LL
Sbjct: 152 KDYRAKAME--VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILL 209
Query: 587 YGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFI 646
YGPPGTGKTLLAKAVATE+ A FI + G E++ K++GE +++IF+ A++ +P+IIFI
Sbjct: 210 YGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFI 269
Query: 647 DEIDAIAPARGTA--EGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRP 704
DEIDAIA R A G++ R + QLL EMDG V +I ATNRPDILDPA+LRP
Sbjct: 270 DEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRP 329
Query: 705 GRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAM 764
GRFDR+I VPAPDEK R EI K+HTR M LA+DV+L+E+A+ TEG GA++ A+C EA M
Sbjct: 330 GRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGM 389
Query: 765 NALRRAVAKLSPEELEEESEKFLKSLIVTRKD 796
NA+R ++ ++ + EK ++ V K+
Sbjct: 390 NAIRELRDYVTMDDFRKAVEKIMEKKKVKVKE 421
Score = 255 bits (645), Expect = 1e-66
Identities = 141/275 (51%), Positives = 184/275 (66%), Gaps = 30/275 (10%)
Query: 190 TEVEVLPQAVEVREEKI-----PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIE 244
T V+VLP+ + R + + P V YEDIGGL++ +++IRE+VELPLKHPELFE++GIE
Sbjct: 143 TVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIE 202
Query: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304
PPKG+LLYGPPGTGKTLLAKAVA E NA FI + G E++ K+ GE +++IFK A+E
Sbjct: 203 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEK 262
Query: 305 APAIIFIDEIDAIAPKREEVV--GEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDAL 361
AP+IIFIDEIDAIA KR + + G+ E +R + QLL MDG +RG V +I ATNRPD L
Sbjct: 263 APSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 322
Query: 362 DPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIK------------ 409
DPA+ RPGRFDR IEV PD++GR EIL+IHTR M + D E + K
Sbjct: 323 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKA 382
Query: 410 --------ALKELEKDDRFDKEKIKKIIEKVSKAK 436
A++EL D + +K +EK+ + K
Sbjct: 383 ICTEAGMNAIRELR--DYVTMDDFRKAVEKIMEKK 415
>emb|CAA67594.1| (X99207) smallminded [Drosophila melanogaster]
Length = 943
Score = 289 bits (731), Expect = 1e-76
Identities = 145/304 (47%), Positives = 210/304 (68%), Gaps = 13/304 (4%)
Query: 517 VTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRL 576
+T DF +A+K+++PSA RE I VP+ WDDIG LE +++EL+ AV P+KYP+ +RL
Sbjct: 631 LTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERL 690
Query: 577 GITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA 636
G+T P GVLL GPPG GKTLLAKA+A E+ NFI+++GPE+++ +VGESE+ +R F++A
Sbjct: 691 GLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRA 750
Query: 637 RQASPAIIFIDEIDAIAPARGT-AEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPD 695
R ++P +IF DE D++ P R +G RI+NQLLTEMDG+ E GV ++AATNRPD
Sbjct: 751 RNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPD 810
Query: 696 ILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG---MPLADDVDLKELARRTEGYTG 752
I+DPA+LRPGR D ++ V P++ R EI K T+ LADDVDL E+A +TEGYTG
Sbjct: 811 IIDPAILRPGRLDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIAAQTEGYTG 870
Query: 753 ADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYM 812
AD+A + ++A+M +LR+++ + L L V + F+ AL++++PSV +
Sbjct: 871 ADLAGLVKQASMFSLRQSL---------NNGDTNLDDLCVRSQHFQEALQQLRPSVNEQD 921
Query: 813 MEYY 816
+ Y
Sbjct: 922 RKIY 925
Score = 213 bits (537), Expect = 6e-54
Identities = 125/329 (37%), Positives = 178/329 (53%), Gaps = 69/329 (20%)
Query: 206 IPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKA 265
+P+ T++DIG L++ E+++ V P+K+PE+ ERLG+ P GVLL GPPG GKTLLAKA
Sbjct: 655 VPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTAPSGVLLCGPPGCGKTLLAKA 714
Query: 266 VANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREE-- 323
+ANEA FI++ GPE+M+ Y GESE +R F+ A +AP +IF DE D++ PKR +
Sbjct: 715 IANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGG 774
Query: 324 VVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQ 383
R+V+QLLT MDG++ R V ++AATNRPD +DPA+ RPGR D + VG P++
Sbjct: 775 DGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQS 834
Query: 384 GRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKD 443
R EIL KA ++ +
Sbjct: 835 ERTEIL--------------------------------------------KATTKNGKRP 850
Query: 444 ILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPE 503
+L +D +L DE+A T G+ GADLA L ++A+M LR+ + G N
Sbjct: 851 VLADDVDL-------------DEIAAQTEGYTGADLAGLVKQASMFSLRQSLNNGDTN-- 895
Query: 504 AETIPREVLEELKVTKADFYEALKMVEPS 532
L++L V F EAL+ + PS
Sbjct: 896 --------LDDLCVRSQHFQEALQQLRPS 916
Score = 177 bits (445), Expect = 4e-43
Identities = 87/208 (41%), Positives = 138/208 (65%), Gaps = 4/208 (1%)
Query: 203 EEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLL 262
E + P ++ DIGG+ ++++ EM+ + +K PE + +LG+ P +G+LL+GPPG GKT L
Sbjct: 241 EVQHPTESFRDIGGMDSTLKELCEML-IHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFL 299
Query: 263 AKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKRE 322
A+A++ + + I E++ GESEER+RE+F +A +P ++FIDEIDAI R+
Sbjct: 300 ARAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQ 359
Query: 323 EVVGEVEKRVVSQLLTLMDGLKSR---GKVIVIAATNRPDALDPALRRPGRFDREIEVGV 379
++E+R+VSQL++ +D LK+ V+VIAAT RPD LDP LRR GRFD EI + +
Sbjct: 360 WASKDMERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHI 419
Query: 380 PDKQGRKEILQIHTRGMPIEPDFEKETV 407
P ++ R+EIL+I G+ ++P + +
Sbjct: 420 PSRKERREILRIQCEGLSVDPKLNYDKI 447
Score = 173 bits (435), Expect = 5e-42
Identities = 102/254 (40%), Positives = 153/254 (60%), Gaps = 6/254 (2%)
Query: 535 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGK 594
R++ ++ P + DIGG++ +EL E + +K P+ + +LG+ P +G+LL+GPPG GK
Sbjct: 238 RDLEVQHPTESFRDIGGMDSTLKELCEMLIH-IKSPEFYFQLGLLPSRGLLLHGPPGCGK 296
Query: 595 TLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAP 654
T LA+A++ + + + I E++ GESE+RIRE+F +A SP ++FIDEIDAI
Sbjct: 297 TFLARAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGG 356
Query: 655 ARGTAEGEKVTDRIINQLLTEMDGLVEN---SGVVVIAATNRPDILDPALLRPGRFDRLI 711
R A + + RI++QL++ +D L N VVVIAAT RPD+LDP L R GRFD I
Sbjct: 357 NRQWA-SKDMERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEI 415
Query: 712 LVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAV 771
+ P K R EI ++ G+ + ++ ++A T GY GAD+ A+ AA A++R
Sbjct: 416 AIHIPSRKERREILRIQCEGLSVDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRS 475
Query: 772 AKLSPEELEEESEK 785
K EL SEK
Sbjct: 476 MK-KFRELHAASEK 488
>gb|AAF50566.1| (AE003559) smid gene product [Drosophila melanogaster]
Length = 944
Score = 289 bits (731), Expect = 1e-76
Identities = 145/304 (47%), Positives = 210/304 (68%), Gaps = 13/304 (4%)
Query: 517 VTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRL 576
+T DF +A+K+++PSA RE I VP+ WDDIG LE +++EL+ AV P+KYP+ +RL
Sbjct: 632 LTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERL 691
Query: 577 GITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA 636
G+T P GVLL GPPG GKTLLAKA+A E+ NFI+++GPE+++ +VGESE+ +R F++A
Sbjct: 692 GLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRA 751
Query: 637 RQASPAIIFIDEIDAIAPARGT-AEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPD 695
R ++P +IF DE D++ P R +G RI+NQLLTEMDG+ E GV ++AATNRPD
Sbjct: 752 RNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPD 811
Query: 696 ILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG---MPLADDVDLKELARRTEGYTG 752
I+DPA+LRPGR D ++ V P++ R EI K T+ LADDVDL E+A +TEGYTG
Sbjct: 812 IIDPAILRPGRLDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIAAQTEGYTG 871
Query: 753 ADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYM 812
AD+A + ++A+M +LR+++ + L L V + F+ AL++++PSV +
Sbjct: 872 ADLAGLVKQASMFSLRQSL---------NNGDTNLDDLCVRSQHFQEALQQLRPSVNEQD 922
Query: 813 MEYY 816
+ Y
Sbjct: 923 RKIY 926
Score = 213 bits (537), Expect = 6e-54
Identities = 125/329 (37%), Positives = 178/329 (53%), Gaps = 69/329 (20%)
Query: 206 IPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKA 265
+P+ T++DIG L++ E+++ V P+K+PE+ ERLG+ P GVLL GPPG GKTLLAKA
Sbjct: 656 VPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTAPSGVLLCGPPGCGKTLLAKA 715
Query: 266 VANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREE-- 323
+ANEA FI++ GPE+M+ Y GESE +R F+ A +AP +IF DE D++ PKR +
Sbjct: 716 IANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGG 775
Query: 324 VVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQ 383
R+V+QLLT MDG++ R V ++AATNRPD +DPA+ RPGR D + VG P++
Sbjct: 776 DGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQS 835
Query: 384 GRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKD 443
R EIL KA ++ +
Sbjct: 836 ERTEIL--------------------------------------------KATTKNGKRP 851
Query: 444 ILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPE 503
+L +D +L DE+A T G+ GADLA L ++A+M LR+ + G N
Sbjct: 852 VLADDVDL-------------DEIAAQTEGYTGADLAGLVKQASMFSLRQSLNNGDTN-- 896
Query: 504 AETIPREVLEELKVTKADFYEALKMVEPS 532
L++L V F EAL+ + PS
Sbjct: 897 --------LDDLCVRSQHFQEALQQLRPS 917
Score = 177 bits (445), Expect = 4e-43
Identities = 87/208 (41%), Positives = 138/208 (65%), Gaps = 4/208 (1%)
Query: 203 EEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLL 262
E + P ++ DIGG+ ++++ EM+ + +K PE + +LG+ P +G+LL+GPPG GKT L
Sbjct: 242 EVQHPTESFRDIGGMDSTLKELCEML-IHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFL 300
Query: 263 AKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKRE 322
A+A++ + + I E++ GESEER+RE+F +A +P ++FIDEIDAI R+
Sbjct: 301 ARAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQ 360
Query: 323 EVVGEVEKRVVSQLLTLMDGLKSR---GKVIVIAATNRPDALDPALRRPGRFDREIEVGV 379
++E+R+VSQL++ +D LK+ V+VIAAT RPD LDP LRR GRFD EI + +
Sbjct: 361 WASKDMERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHI 420
Query: 380 PDKQGRKEILQIHTRGMPIEPDFEKETV 407
P ++ R+EIL+I G+ ++P + +
Sbjct: 421 PSRKERREILRIQCEGLSVDPKLNYDKI 448
Score = 173 bits (435), Expect = 5e-42
Identities = 102/254 (40%), Positives = 153/254 (60%), Gaps = 6/254 (2%)
Query: 535 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGK 594
R++ ++ P + DIGG++ +EL E + +K P+ + +LG+ P +G+LL+GPPG GK
Sbjct: 239 RDLEVQHPTESFRDIGGMDSTLKELCEMLIH-IKSPEFYFQLGLLPSRGLLLHGPPGCGK 297
Query: 595 TLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAP 654
T LA+A++ + + + I E++ GESE+RIRE+F +A SP ++FIDEIDAI
Sbjct: 298 TFLARAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGG 357
Query: 655 ARGTAEGEKVTDRIINQLLTEMDGLVEN---SGVVVIAATNRPDILDPALLRPGRFDRLI 711
R A + + RI++QL++ +D L N VVVIAAT RPD+LDP L R GRFD I
Sbjct: 358 NRQWA-SKDMERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEI 416
Query: 712 LVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAV 771
+ P K R EI ++ G+ + ++ ++A T GY GAD+ A+ AA A++R
Sbjct: 417 AIHIPSRKERREILRIQCEGLSVDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRS 476
Query: 772 AKLSPEELEEESEK 785
K EL SEK
Sbjct: 477 MK-KFRELHAASEK 489
>gi|4505725 peroxisome biogenesis factor 1 [Homo sapiens]
>gi|8134613|sp|O43933|PEX1_HUMAN PEROXISOME BIOGENESIS
FACTOR 1 (PEROXIN-1) (PEROXISOME BIOGENESIS DISORDER
PROTEIN 1) >gi|2655141|gb|AAB87880.1| (AF026086)
peroxisome biogenesis disorder protein 1 [Homo sapiens]
>gi|2827156|gb|AAB99758.1| (AF030356) peroxisome
biogenesis gene 1 [Homo sapiens]
>gi|6015438|dbj|BAA85162.1| (AB008112) PEX1 [Homo
sapiens]
Length = 1283
Score = 282 bits (713), Expect = 1e-74
Identities = 198/600 (33%), Positives = 312/600 (52%), Gaps = 88/600 (14%)
Query: 190 TEVEVL--PQAVEVREEKI----PEVTYEDIGGLKE-AIEKIREMVELPLKHP---ELFE 239
T ++VL P E E+I P + +GG+ + + + L P +L
Sbjct: 526 TTIQVLLDPMVKEENSEEIDFILPFLKLSSLGGVNSLGVSSLEHITHSLLGRPLSRQLMS 585
Query: 240 RLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----NAYFIAINGPEIMSKYYGESEERLR 295
+ +LL G G+GK+ LAKA+ EA +A+ ++ + K ++ L
Sbjct: 586 LVAGLRNGALLLTGGKGSGKSTLAKAICKEAFDKLDAHVERVDCKALRGKRLENIQKTLE 645
Query: 296 EIFKEAEENAPAIIFIDEIDAIA-----PKREEVVGEVE-KRVVSQLLTLMDGLKSRGKV 349
F EA P+++ +D++D IA P+ E V+ +R+ L ++ S G +
Sbjct: 646 VAFSEAVWMQPSVVLLDDLDLIAGLPAVPEHEHSPDAVQSQRLAHALNDMIKEFISMGSL 705
Query: 350 IVIAATNRPD-ALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVI 408
+ + AT++ +L P L + +G+ I
Sbjct: 706 VALIATSQSQQSLHPLL-------------------------VSAQGVHI---------F 731
Query: 409 KALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELA 468
+ ++ ++ ++ E+ +I+ V K K + +I K D L +A
Sbjct: 732 QCVQHIQPPNQ---EQRCEILCNVIKNKLDCDIN---------------KFTDLDLQHVA 773
Query: 469 EVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKM 528
+ T GFV D L A L R ++I E+L +T DF +AL+
Sbjct: 774 KETGGFVARDFTVLVDRAIHSRLSR-----------QSISTR--EKLVLTTLDFQKALRG 820
Query: 529 VEPSALREVLIEVP-NVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLY 587
P++LR V + P ++ WD IGGL +V+Q L + ++ P KYP+ F L I G+LLY
Sbjct: 821 FLPASLRSVNLHKPRDLGWDKIGGLHEVRQILMDTIQLPAKYPELFANLPIRQRTGILLY 880
Query: 588 GPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFID 647
GPPGTGKTLLA +A ES+ NFI+++GPE+LSK++G SE+ +R+IF +A+ A P I+F D
Sbjct: 881 GPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRDIFIRAQAAKPCILFFD 940
Query: 648 EIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRF 707
E ++IAP RG + VTDR++NQLLT++DG+ GV V+AAT+RPD++DPALLRPGR
Sbjct: 941 EFESIAPRRG-HDNTGVTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRL 999
Query: 708 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNAL 767
D+ + P PD+ +R EI V + +PLADDVDL+ +A T+ +TGAD+ A+ A + AL
Sbjct: 1000 DKCVYCPPPDQVSRLEILNVLSDSLPLADDVDLQHVASVTDSFTGADLKALLYNAQLEAL 1059
>gi|11419443 peroxisome biogenesis factor 1 [Homo sapiens]
Length = 1303
Score = 282 bits (713), Expect = 1e-74
Identities = 198/600 (33%), Positives = 312/600 (52%), Gaps = 88/600 (14%)
Query: 190 TEVEVL--PQAVEVREEKI----PEVTYEDIGGLKE-AIEKIREMVELPLKHP---ELFE 239
T ++VL P E E+I P + +GG+ + + + L P +L
Sbjct: 546 TTIQVLLDPMVKEENSEEIDFILPFLKLSSLGGVNSLGVSSLEHITHSLLGRPLSRQLMS 605
Query: 240 RLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----NAYFIAINGPEIMSKYYGESEERLR 295
+ +LL G G+GK+ LAKA+ EA +A+ ++ + K ++ L
Sbjct: 606 LVAGLRNGALLLTGGKGSGKSTLAKAICKEAFDKLDAHVERVDCKALRGKRLENIQKTLE 665
Query: 296 EIFKEAEENAPAIIFIDEIDAIA-----PKREEVVGEVE-KRVVSQLLTLMDGLKSRGKV 349
F EA P+++ +D++D IA P+ E V+ +R+ L ++ S G +
Sbjct: 666 VAFSEAVWMQPSVVLLDDLDLIAGLPAVPEHEHSPDAVQSQRLAHALNDMIKEFISMGSL 725
Query: 350 IVIAATNRPD-ALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVI 408
+ + AT++ +L P L + +G+ I
Sbjct: 726 VALIATSQSQQSLHPLL-------------------------VSAQGVHI---------F 751
Query: 409 KALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELA 468
+ ++ ++ ++ E+ +I+ V K K + +I K D L +A
Sbjct: 752 QCVQHIQPPNQ---EQRCEILCNVIKNKLDCDIN---------------KFTDLDLQHVA 793
Query: 469 EVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKM 528
+ T GFV D L A L R ++I E+L +T DF +AL+
Sbjct: 794 KETGGFVARDFTVLVDRAIHSRLSR-----------QSISTR--EKLVLTTLDFQKALRG 840
Query: 529 VEPSALREVLIEVP-NVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLY 587
P++LR V + P ++ WD IGGL +V+Q L + ++ P KYP+ F L I G+LLY
Sbjct: 841 FLPASLRSVNLHKPRDLGWDKIGGLHEVRQILMDTIQLPAKYPELFANLPIRQRTGILLY 900
Query: 588 GPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFID 647
GPPGTGKTLLA +A ES+ NFI+++GPE+LSK++G SE+ +R+IF +A+ A P I+F D
Sbjct: 901 GPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRDIFIRAQAAKPCILFFD 960
Query: 648 EIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRF 707
E ++IAP RG + VTDR++NQLLT++DG+ GV V+AAT+RPD++DPALLRPGR
Sbjct: 961 EFESIAPRRG-HDNTGVTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRL 1019
Query: 708 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNAL 767
D+ + P PD+ +R EI V + +PLADDVDL+ +A T+ +TGAD+ A+ A + AL
Sbjct: 1020 DKCVYCPPPDQVSRLEILNVLSDSLPLADDVDLQHVASVTDSFTGADLKALLYNAQLEAL 1079
>gb|AAG29873.1| (AF313486) valosin-containing protein [Homo sapiens]
Length = 307
Score = 278 bits (703), Expect = 2e-73
Identities = 154/314 (49%), Positives = 206/314 (65%), Gaps = 35/314 (11%)
Query: 73 IRMDGYIRKNAGVTIGDFVTIRRA-EVKEAKKVVLAPAQKGVIVQIPGDIVKNNLLG--- 128
IRM+ +R N V +GD ++I+ +VK K++ + P + I G++ + L
Sbjct: 20 IRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDD-TVEGITGNLFEVYLKPYFL 78
Query: 129 ---RPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQ 185
RP+ KGDI + G G ++F VV T P
Sbjct: 79 EAYRPIRKGDIFLVRG-------------------------GMRAVEFKVVETDPSPYCI 113
Query: 186 ITYNTEV--EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGI 243
+ +T + E P E EE + EV Y+DIGG ++ + +I+EMVELPL+HP LF+ +G+
Sbjct: 114 VAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV 173
Query: 244 EPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEE 303
+PP+G+LLYGPPGTGKTL+A+AVANE A+F INGPEIMSK GESE LR+ F+EAE+
Sbjct: 174 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 233
Query: 304 NAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDP 363
NAPAIIFIDE+DAIAPKRE+ GEVE+R+VSQLLTLMDGLK R VIV+AATNRP+++DP
Sbjct: 234 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 293
Query: 364 ALRRPGRFDREIEV 377
ALRR GRFDRE+++
Sbjct: 294 ALRRFGRFDREVDI 307
Score = 192 bits (483), Expect = 1e-47
Identities = 95/166 (57%), Positives = 124/166 (74%), Gaps = 1/166 (0%)
Query: 544 VHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
V +DDIGG +++E VE PL++P FK +G+ PP+G+LLYGPPGTGKTL+A+AVA
Sbjct: 139 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 198
Query: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEK 663
E+ A F I GPE++SK GESE +R+ F +A + +PAIIFIDE+DAIAP R GE
Sbjct: 199 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE- 257
Query: 664 VTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDR 709
V RI++QLLT MDGL + + V+V+AATNRP+ +DPAL R GRFDR
Sbjct: 258 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDR 303
>sp|P36966|PEX6_YARLI PEROXISOME BIOSYNTHESIS PROTEIN PAY4 (PEROXIN-6)
>gi|1078611|pir||A53121 peroxisome assembly protein PAY4
- yeast (Yarrowia lipolytica) >gi|393291|gb|AAA16622.1|
(L23858) ATPase [Yarrowia lipolytica]
Length = 1025
Score = 273 bits (692), Expect = 4e-72
Identities = 207/671 (30%), Positives = 330/671 (48%), Gaps = 100/671 (14%)
Query: 190 TEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELP---LKHPELFERLGIEPP 246
T V+P +V RE + T G +KIR +V++ L H +L
Sbjct: 419 TSSAVIPTSVPWREY-LGLDTLPKFGSEFAYADKIRNLVQISTSALSHAKL--------N 469
Query: 247 KGVLLYGPP-GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENA 305
VLL+ G GK+ + ++VA + I+ ++ ++ LR A +
Sbjct: 470 TSVLLHSAKRGVGKSTVLRSVAAQCGISVFEISCFGLIGDNEAQTLGTLRAKLDRAYGCS 529
Query: 306 PAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPAL 365
P ++ + +++IA K ++ ++ +VS+L+ ++ G V++ A +N PD + A+
Sbjct: 530 PCVVVLQHLESIAKKSDQ--DGKDEGIVSKLVDVLADYSGHG-VLLAATSNDPDKISEAI 586
Query: 366 RRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKI 425
R RF EIE+GVP + R++I T+ P
Sbjct: 587 R--SRFQFEIEIGVPSEPQRRQIFSHLTKSGPGGDSI----------------------- 621
Query: 426 KKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALARE 485
RN I +R+ D ++ LA + G DL A+ +
Sbjct: 622 -----------------------RNAPISLRS---DVSVENLALQSAGLTPPDLTAIVQT 655
Query: 486 AAMVVLRRLIKEGKINPEAETIPREVLEE--LKVTKADFYEALKMVEPSALREV-LIEVP 542
+ + RL K K P A L L++T +DF +A+ + +P
Sbjct: 656 TRLRAIDRLNKLTKERPIATLDDLLTLSHGTLQLTPSDFDDAIADARQKYSDSIGAPRIP 715
Query: 543 NVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVA 602
NV WDD+GG+E VK+++ + +E PLKYP F G+ G+L YGPPGTGKTLLAKA+A
Sbjct: 716 NVGWDDVGGMEGVKKDILDTIETPLKYPHWFSD-GVKKRSGILFYGPPGTGKTLLAKAIA 774
Query: 603 TESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAP-ARGTAEG 661
T NF +++GPE+L+ ++GESE +R +F+KAR A P ++F DE+D++AP R +
Sbjct: 775 TTFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVVFFDELDSVAPQRRNQGDS 834
Query: 662 EKVTDRIINQLLTEMDGL--VENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEK 719
V DRI++QLL E+DG+ GV V+ ATNRPD+LD ALLRPGRFD+++ + D
Sbjct: 835 GGVMDRIVSQLLAELDGMSTAGGEGVFVVGATNRPDLLDEALLRPGRFDKMLYLGISDTH 894
Query: 720 ARFE-IFKVHTRGMPLADDVDLKELARRTE-GYTGADIAAVCREAAMNALRR------AV 771
+ + I + TR LA DV L+ +++R +TGAD A+C +A +NA+ R A
Sbjct: 895 EKQQTIMEALTRKFRLAADVSLEAISKRCPFTFTGADFYALCSDAMLNAMTRTANEVDAK 954
Query: 772 AKLSPEELEEESEKFLK--------------SLIVTRKDFEVALKKVKPSVTKYMMEYY- 816
KL + EE E+ + + V ++DFE A ++ PSV+ +++Y
Sbjct: 955 IKLLNKNREEAGEEPVSIRWWFDHEATKSDIEVEVAQQDFEKAKDELSPSVSAEELQHYL 1014
Query: 817 ---RQFEESRK 824
+QFE +K
Sbjct: 1015 KLRQQFEGGKK 1025
Score = 176 bits (442), Expect = 8e-43
Identities = 93/242 (38%), Positives = 148/242 (60%), Gaps = 11/242 (4%)
Query: 178 TIPKGIVQITYNTEVEVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPL 232
T+ G +Q+T + + + A + + +IP V ++D+GG++ + I + +E PL
Sbjct: 681 TLSHGTLQLTPSDFDDAIADARQKYSDSIGAPRIPNVGWDDVGGMEGVKKDILDTIETPL 740
Query: 233 KHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEE 292
K+P F G++ G+L YGPPGTGKTLLAKA+A + F ++ GPE+++ Y GESE
Sbjct: 741 KYPHWFSD-GVKKRSGILFYGPPGTGKTLLAKAIATTFSLNFFSVKGPELLNMYIGESEA 799
Query: 293 RLREIFKEAEENAPAIIFIDEIDAIAPKREEV--VGEVEKRVVSQLLTLMDGLKSRG--K 348
+R +F++A + P ++F DE+D++AP+R G V R+VSQLL +DG+ + G
Sbjct: 800 NVRRVFQKARDAKPCVVFFDELDSVAPQRRNQGDSGGVMDRIVSQLLAELDGMSTAGGEG 859
Query: 349 VIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKE-ILQIHTRGMPIEPDFEKETV 407
V V+ ATNRPD LD AL RPGRFD+ + +G+ D +++ I++ TR + D E +
Sbjct: 860 VFVVGATNRPDLLDEALLRPGRFDKMLYLGISDTHEKQQTIMEALTRKFRLAADVSLEAI 919
Query: 408 IK 409
K
Sbjct: 920 SK 921
>gb|AAD25809.1|AC006550_17 (AC006550) Belongs to PF|00004 ATPases associated with various
cellular activities. [Arabidopsis thaliana]
Length = 983
Score = 272 bits (688), Expect = 1e-71
Identities = 218/708 (30%), Positives = 348/708 (48%), Gaps = 95/708 (13%)
Query: 160 FFEAMSVGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKE 219
+F+ +++ +F+ VN +V T LP + V K+P E E
Sbjct: 335 YFKVIAMEPSNERFLRVNHSQTALV--LGGTVSSGLPPDLLVYRSKVPMPLQE------E 386
Query: 220 AIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAING 279
+ + ++ PL L +L + VLL+G PG GK + K VA + + +
Sbjct: 387 TVNILASVLSPPLCPSALASKLRV----AVLLHGIPGCGKRTVVKYVARRLGLHVVEFSC 442
Query: 280 PEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAP--KREEVVGE---VEKRVVS 334
+++ ++ L + F A +P I+ + D ++ +G+ V + S
Sbjct: 443 HSLLASSERKTSTALAQTFNMARRYSPTILLLRHFDVFKNLGSQDGSLGDRVGVSFEIAS 502
Query: 335 QLLTLMDGL---------------------KSRG-KVIVIAATNRPDALDPALRRPGRFD 372
+ L + + K RG +V++IA+ + + P +RR F
Sbjct: 503 VIRELTEPVSNGDSSMEEKSNSNFSENEVGKFRGHQVLLIASAESTEGISPTIRRC--FS 560
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKV 432
EI +G + + R E+L +G+ F A K D F +K ++ +
Sbjct: 561 HEIRMGSLNDEQRSEMLSQSLQGVS---QFLNVCEYNAPKLQISSDEF----MKGLVGQT 613
Query: 433 SKAKSEEEIKDILREDRNLYI--EVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVV 490
S + + NLYI E TK I+ L D+L G D+
Sbjct: 614 SGFLPRDLQALVADAGANLYISQESETKKINSLSDDLH-------GVDIH---------- 656
Query: 491 LRRLIKEGKINPEAETIPREVLEELKVTKADFYEAL---KMVEPSALREVLIEVPNVHWD 547
+ +I+ E + K DF +AL K SAL +VPNV WD
Sbjct: 657 -----QASQIDNSTEKL---------TAKEDFTKALDRSKKRNASALGAP--KVPNVKWD 700
Query: 548 DIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQA 607
D+GGLEDVK + + V+ PL + F G+ GVLLYGPPGTGKTLLAKAVATE
Sbjct: 701 DVGGLEDVKTSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSL 759
Query: 608 NFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARG-TAEGEKVTD 666
NF++++GPE+++ ++GESEK +R+IF KAR A P +IF DE+D++APARG + + V D
Sbjct: 760 NFLSVKGPELINMYIGESEKNVRDIFEKARSARPCVIFFDELDSLAPARGASGDSGGVMD 819
Query: 667 RIINQLLTEMDGLVENS-GVVVIAATNRPDILDPALLRPGRFDRLILVPA-PDEKARFEI 724
R+++Q+L E+DGL ++S + +I A+NRPD++DPALLRPGRFD+L+ V D R +
Sbjct: 820 RVVSQMLAEIDGLSDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNADASYRERV 879
Query: 725 FKVHTRGMPLADDVDLKELARRTEG-YTGADIAAVCREAAMNALRRAVAKLSPEELEEES 783
K TR L++DV L +A++ +TGAD+ A+C +A A +R V+K ++ E
Sbjct: 880 LKALTRKFKLSEDVSLYSVAKKCPSTFTGADMYALCADAWFQAAKRKVSKSDSGDMPTE- 938
Query: 784 EKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGEST 831
E S++V DF A+ ++ PS++ + +++E R + G S+
Sbjct: 939 EDDPDSVVVEYVDFIKAMDQLSPSLS---ITELKKYEMLRDQFQGRSS 983
>gi|11499558 26S protease regulatory subunit 4 [Archaeoglobus fulgidus]
>gi|3122632|sp|O28303|PRS1_ARCFU PUTATIVE 26S PROTEASE
REGULATORY SUBUNIT HOMOLOG AF1976
>gi|7435736|pir||G69496 ATP-dependent 26S proteinase
regulatory subunit 4 homolog - Archaeoglobus fulgidus
>gi|2648566|gb|AAB89280.1| (AE000967) 26S protease
regulatory subunit 4 [Archaeoglobus fulgidus]
Length = 398
Score = 272 bits (687), Expect = 2e-71
Identities = 167/398 (41%), Positives = 235/398 (58%), Gaps = 26/398 (6%)
Query: 401 DFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVR---- 456
D E + +++ LK+LE +D + ++ + +E K E I+ RE R L EV
Sbjct: 3 DSEIQYLLEKLKKLE-EDYYKLRELYRRLEDEKKFIESERIR-YEREVRRLRSEVERLRS 60
Query: 457 ----TKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVL 512
++ +L++ V G +V + I E ++ P A R L
Sbjct: 61 PPLLVGVVSDILEDGRVVVKSSTGPKF--------VVNTSQYINEEELKPGA----RVAL 108
Query: 513 EELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKA 572
+ + + K +P + E P V ++DIGGL+ +E+REAVE PL P+
Sbjct: 109 NQQTLAIVNVLPTSK--DPMVYGFEVEEKPEVSYEDIGGLDVQIEEIREAVELPLLKPEL 166
Query: 573 FKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREI 632
F +GI PPKGVLLYGPPGTGKTLLAKAVA +++A FI + G E + K++GE + +RE+
Sbjct: 167 FAEVGIEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREV 226
Query: 633 FRKARQASPAIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLTEMDGLVENSGVVVIAA 690
F+ A++ +P+IIFIDE+DAIA R ++ G++ R + QLL E+DG V VI A
Sbjct: 227 FQLAKEKAPSIIFIDELDAIAARRTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIGA 286
Query: 691 TNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGY 750
TNR DILDPA+LRPGRFDR+I VP P + R +IFK+HTR M LA+DVD KELAR TEG
Sbjct: 287 TNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDVDFKELARITEGA 346
Query: 751 TGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLK 788
+GADI A+C EA M A+R AK++ + + EK LK
Sbjct: 347 SGADIKAICTEAGMFAIREERAKVTMLDFTKAIEKVLK 384
Score = 231 bits (584), Expect = 2e-59
Identities = 130/241 (53%), Positives = 159/241 (65%), Gaps = 14/241 (5%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
V + +VN +P + Y EVE EK PEV+YEDIGGL IE+IR
Sbjct: 106 VALNQQTLAIVNVLPTSKDPMVYGFEVE----------EK-PEVSYEDIGGLDVQIEEIR 154
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E VELPL PELF +GIEPPKGVLLYGPPGTGKTLLAKAVAN+ A FI + G E + K
Sbjct: 155 EAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQK 214
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
Y GE +RE+F+ A+E AP+IIFIDE+DAIA +R + G+ E +R + QLL +DG
Sbjct: 215 YIGEGARLVREVFQLAKEKAPSIIFIDELDAIAARRTNSDTSGDREVQRTMMQLLAELDG 274
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
RG V VI ATNR D LDPA+ RPGRFDR IEV +P +GR +I +IHTR M + D
Sbjct: 275 FDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDV 334
Query: 403 E 403
+
Sbjct: 335 D 335
>sp|P33289|PEX6_PICPA PEROXISOME BIOSYNTHESIS PROTEIN PAS5 (PEROXIN-6)
>gi|396147|emb|CAA80278.1| (Z22556) PAS5 [Pichia
pastoris]
Length = 1165
Score = 269 bits (681), Expect = 8e-71
Identities = 190/618 (30%), Positives = 314/618 (50%), Gaps = 88/618 (14%)
Query: 258 GKTLLAKAVANEANAYFIAINGPEIM-----SKYYGESEERLREIFKEAEENAPAIIFID 312
GK+LL ++A E + + I+G E++ SK G +L + E P I+FI
Sbjct: 575 GKSLLVHSLALECGVHLVEIDGYEVLNPSSESKTIGTIRGKLDRV---VEGCTPLIVFIK 631
Query: 313 EIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFD 372
I+A+ K E+ + + + ++ L+D ++ V+ +A+TN D L LR +F
Sbjct: 632 HIEALTKKSEQ---QQKDSLAVKINELIDEYTAKPGVLFVASTNDSDNLSDELR--AKFK 686
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKV 432
EI +GVP +Q E+ + K L + FD++ K+ E
Sbjct: 687 FEIVLGVPSEQ-------------------ERTLIFKYLID------FDQKTTPKVTEGT 721
Query: 433 SKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLR 492
+++ RN D L L+ + G DL ++ A + +
Sbjct: 722 ---------RELSFAPRN----------DLSLSSLSLQSAGLTPRDLISIVENAKTLAVD 762
Query: 493 RLIKEGKI-NPEAETIPREVLEELKVTKADFYEALKMVEPSALREV-LIEVPNVHWDDIG 550
R+ K N E + +K T D +++ + +PNV W+D+G
Sbjct: 763 RVESLAKHHNVSFENMVYSSGGYIKFTPEDVEKSINTARNKFSDSIGAPRIPNVKWEDVG 822
Query: 551 GLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFI 610
GL+ VK E+ + ++ P+K+P+ F GI G+L YGPPGTGKTLLAKA+AT NF
Sbjct: 823 GLDVVKDEILDTIDMPMKHPELFSN-GIKKRSGILFYGPPGTGKTLLAKAIATNFALNFF 881
Query: 611 AIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGT-AEGEKVTDRII 669
+++GPE+L+ ++GESE +R++F++AR A P ++F DE+D++AP RG + E V DRI+
Sbjct: 882 SVKGPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKRGNQGDSEGVMDRIV 941
Query: 670 NQLLTEMDGLV---ENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD-EKARFEIF 725
+QLL E+DG+ GV V+ ATNRPD+LD ALLRPGRFD+++ + D + + +I
Sbjct: 942 SQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSDTHEKQSKIM 1001
Query: 726 KVHTRGMPLADDVDLKELARRTE-GYTGADIAAVCREAAMNALRRAV------AKLSPEE 778
+ +R L VDL ++A +TGAD A+C +A +NA+ R K EE
Sbjct: 1002 EALSRKFHLHPSVDLDKVAESCPFTFTGADFYALCSDAMLNAMTRIANTVDEKIKRYNEE 1061
Query: 779 LEEESEKFLK------------SLIVTRKDFEVALKKVKPSVTKYMMEYY----RQFEES 822
L E+S+ + ++VT +DF+ + K++ PSV+ +++Y + FE
Sbjct: 1062 LPEKSQVSTRWWFDNVATKEDIDVLVTLEDFDKSRKELVPSVSAEELDHYLRVRQNFEGG 1121
Query: 823 RKRMVGESTGREPDYFTG 840
+++ V + G+ + G
Sbjct: 1122 KEKKVVQENGQTEHFSNG 1139
Score = 177 bits (444), Expect = 5e-43
Identities = 90/212 (42%), Positives = 136/212 (63%), Gaps = 7/212 (3%)
Query: 205 KIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAK 264
+IP V +ED+GGL ++I + +++P+KHPELF GI+ G+L YGPPGTGKTLLAK
Sbjct: 812 RIPNVKWEDVGGLDVVKDEILDTIDMPMKHPELFSN-GIKKRSGILFYGPPGTGKTLLAK 870
Query: 265 AVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEV 324
A+A F ++ GPE+++ Y GESE +R++F+ A + P ++F DE+D++APKR
Sbjct: 871 AIATNFALNFFSVKGPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKRGNQ 930
Query: 325 VGE--VEKRVVSQLLTLMDGLK---SRGKVIVIAATNRPDALDPALRRPGRFDREIEVGV 379
V R+VSQLL +DG+ V V+ ATNRPD LD AL RPGRFD+ + +GV
Sbjct: 931 GDSEGVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGV 990
Query: 380 PD-KQGRKEILQIHTRGMPIEPDFEKETVIKA 410
D + + +I++ +R + P + + V ++
Sbjct: 991 SDTHEKQSKIMEALSRKFHLHPSVDLDKVAES 1022
>sp|P46468|CDAT_PLAFA PUTATIVE CELL DIVISION CYCLE ATPASE >gi|552189|gb|AAA29520.1|
(M96757) cell division cycle ATPase [Plasmodium
falciparum]
Length = 709
Score = 269 bits (681), Expect = 8e-71
Identities = 130/207 (62%), Positives = 165/207 (78%)
Query: 203 EEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLL 262
EE ++TYED+GG+K+ + KIRE++ELPLK+PE+F +GI PKGVL++G PGTGKT +
Sbjct: 140 EENNDDITYEDLGGMKKQLNKIRELIELPLKYPEIFMSIGISAPKGVLMHGIPGTGKTSI 199
Query: 263 AKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKRE 322
AKA+ANE+NAY INGPEIMSK+ GESE++LR+IFK+A E P IIFIDEID+IA KR
Sbjct: 200 AKAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASEKTPCIIFIDEIDSIANKRS 259
Query: 323 EVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDK 382
+ E+EKRVVSQLLTLMDGLK V+V+AATNRP+++DPALRR GRFDREIE+ VPD+
Sbjct: 260 KSNNELEKRVVSQLLTLMDGLKKNNNVLVLAATNRPNSIDPALRRFGRFDREIEIPVPDE 319
Query: 383 QGRKEILQIHTRGMPIEPDFEKETVIK 409
QGR EIL T+ M ++PD + K
Sbjct: 320 QGRYEILLTKTKKMKLDPDVNLRKIAK 346
Score = 241 bits (608), Expect = 3e-62
Identities = 119/246 (48%), Positives = 177/246 (71%), Gaps = 3/246 (1%)
Query: 543 NVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVA 602
++ ++D+GG++ ++RE +E PLKYP+ F +GI+ PKGVL++G PGTGKT +AKA+A
Sbjct: 145 DITYEDLGGMKKQLNKIRELIELPLKYPEIFMSIGISAPKGVLMHGIPGTGKTSIAKAIA 204
Query: 603 TESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGE 662
ES A I GPE++SK +GESE+++R+IF+KA + +P IIFIDEID+IA R + E
Sbjct: 205 NESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASEKTPCIIFIDEIDSIANKRSKSNNE 264
Query: 663 KVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARF 722
+ R+++QLLT MDGL +N+ V+V+AATNRP+ +DPAL R GRFDR I +P PDE+ R+
Sbjct: 265 -LEKRVVSQLLTLMDGLKKNNNVLVLAATNRPNSIDPALRRFGRFDREIEIPVPDEQGRY 323
Query: 723 EIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEE 782
EI T+ M L DV+L+++A+ GY GAD+A +C EAA+ ++ + L + EE+
Sbjct: 324 EILLTKTKKMKLDPDVNLRKIAKECHGYVGADLAQLCFEAAIQCIKEHIHFLDLD--EED 381
Query: 783 SEKFLK 788
+F+K
Sbjct: 382 FIEFMK 387
Score = 215 bits (543), Expect = 1e-54
Identities = 99/202 (49%), Positives = 141/202 (69%)
Query: 499 KINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQE 558
K++ IP +L +L + F AL + PS+LRE +++P V W+DIGG+ +VK++
Sbjct: 508 KLDKNERRIPAYILNKLTIKAKHFQHALNICNPSSLRERQVQIPTVTWNDIGGMNEVKEQ 567
Query: 559 LREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVL 618
L+E + +PL+Y + + KG+LLYGPPG GKTLLAKA+A E +ANFI+++GPE+L
Sbjct: 568 LKETILYPLEYKHLYNKFNSNYNKGILLYGPPGCGKTLLAKAIANECKANFISVKGPELL 627
Query: 619 SKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDG 678
+ W GESE +R++F KAR ASP IIF DEID++A R + +DR+INQ+LTE+DG
Sbjct: 628 TMWFGESEANVRDLFDKARAASPCIIFFDEIDSLAKERNSNTNNDASDRVINQILTEIDG 687
Query: 679 LVENSGVVVIAATNRPDILDPA 700
+ E + +IAATNRPDILD A
Sbjct: 688 INEKKTIFIIAATNRPDILDKA 709
Score = 166 bits (416), Expect = 9e-40
Identities = 77/170 (45%), Positives = 117/170 (68%), Gaps = 1/170 (0%)
Query: 196 PQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPP 255
P ++ R+ +IP VT+ DIGG+ E E+++E + PL++ L+ + KG+LLYGPP
Sbjct: 540 PSSLRERQVQIPTVTWNDIGGMNEVKEQLKETILYPLEYKHLYNKFNSNYNKGILLYGPP 599
Query: 256 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEID 315
G GKTLLAKA+ANE A FI++ GPE+++ ++GESE +R++F +A +P IIF DEID
Sbjct: 600 GCGKTLLAKAIANECKANFISVKGPELLTMWFGESEANVRDLFDKARAASPCIIFFDEID 659
Query: 316 AIAPKR-EEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
++A +R + RV++Q+LT +DG+ + + +IAATNRPD LD A
Sbjct: 660 SLAKERNSNTNNDASDRVINQILTEIDGINEKKTIFIIAATNRPDILDKA 709
>sp|O26824|PRS1_METTH PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HOMOLOG MTH728
>gi|7435737|pir||C69197 ATP-dependent 26S proteinase
regulatory subunit 4 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621817|gb|AAB85233.1| (AE000852) ATP-dependent 26S
protease regulatory subunit 4 [Methanobacterium
thermoautotrophicum]
Length = 410
Score = 267 bits (675), Expect = 4e-70
Identities = 169/403 (41%), Positives = 235/403 (57%), Gaps = 33/403 (8%)
Query: 405 ETVIKALKELEKDDRFDKEKIKKI-------IEKVSKAKS--EEEIKDILREDRNLYIEV 455
+ V+K +++L+K+ R KE+ K I K+ K K E E + RE ++L E+
Sbjct: 6 QNVLKKIEDLKKEVRMLKEENSKTKRNLMWKIRKLEKDKLLIENERTRLDREVKSLRGEI 65
Query: 456 RTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLR--RLIKEGKINPEAETIPREVLE 513
L+ +A VT +A + V+ R I ++ P A R L
Sbjct: 66 ERFRTPPLV--IATVTEVLDDHRVAVKSTTGPHFVINYSRFIDRKQLEPGA----RVALN 119
Query: 514 ELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAF 573
+ + D + K +P + E P+V ++ IGGLE+ +E++E VE PLK P+ F
Sbjct: 120 QQTFSIVDVLPSEK--DPVVTGMEVEEKPDVSYEQIGGLEEQVREVKETVELPLKKPELF 177
Query: 574 KRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIF 633
+++GI PPKGVLLYGPPGTGKTLLAKAVA E+ A FI I E + K++GE + +R +F
Sbjct: 178 EKIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRKYIGEGARLVRGVF 237
Query: 634 RKARQASPAIIFIDEIDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAAT 691
A++ SP+IIFIDEIDA+A R + G++ R + QLL E+DG V ++AAT
Sbjct: 238 ELAKEKSPSIIFIDEIDAVAAKRLKSSTSGDREVQRTLMQLLAELDGFESRGNVGIVAAT 297
Query: 692 NRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYT 751
NRPDILDPALLRPGRFDR I VP P+E R EI K+HT GM LA++VD++ LAR T+G +
Sbjct: 298 NRPDILDPALLRPGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEVDIELLARITDGAS 357
Query: 752 GADIAAVCREAAMNALR------------RAVAKLSPEELEEE 782
GAD+ A+C EA M A+R AV K+ E EEE
Sbjct: 358 GADLKAICTEAGMFAIRDERDEVTMADFMDAVDKIMGVEKEEE 400
Score = 243 bits (615), Expect = 4e-63
Identities = 129/247 (52%), Positives = 173/247 (69%), Gaps = 14/247 (5%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
V + F +V+ +P +E + + +EV E+ P+V+YE IGGL+E + +++
Sbjct: 116 VALNQQTFSIVDVLP---------SEKDPVVTGMEVEEK--PDVSYEQIGGLEEQVREVK 164
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E VELPLK PELFE++GIEPPKGVLLYGPPGTGKTLLAKAVA+E NA FI I E + K
Sbjct: 165 ETVELPLKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRK 224
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
Y GE +R +F+ A+E +P+IIFIDEIDA+A KR G+ E +R + QLL +DG
Sbjct: 225 YIGEGARLVRGVFELAKEKSPSIIFIDEIDAVAAKRLKSSTSGDREVQRTLMQLLAELDG 284
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
+SRG V ++AATNRPD LDPAL RPGRFDR IEV +P++ GR+EIL+IHT GM + +
Sbjct: 285 FESRGNVGIVAATNRPDILDPALLRPGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEV 344
Query: 403 EKETVIK 409
+ E + +
Sbjct: 345 DIELLAR 351
>pir||A48667 peroxisomal assembly protein 5 - yeast (Pichia pastoris)
Length = 1165
Score = 266 bits (674), Expect = 5e-70
Identities = 189/618 (30%), Positives = 313/618 (50%), Gaps = 88/618 (14%)
Query: 258 GKTLLAKAVANEANAYFIAINGPEIM-----SKYYGESEERLREIFKEAEENAPAIIFID 312
GK+LL ++A E + + I+G E++ SK G +L + E P I+FI
Sbjct: 575 GKSLLVHSLALECGVHLVEIDGYEVLNPSSESKTIGTIRGKLDRV---VEGCTPLIVFIK 631
Query: 313 EIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFD 372
I+A+ K E+ + + + ++ L+D ++ V+ +A+TN D L LR +F
Sbjct: 632 HIEALTKKSEQ---QQKDSLAVKINELIDEYTAKPGVLFVASTNDSDNLSDELR--AKFK 686
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKV 432
EI +GVP +Q E+ + K L + FD++ K+ E
Sbjct: 687 FEIVLGVPSEQ-------------------ERTLIFKYLID------FDQKTTPKVTEGT 721
Query: 433 SKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLR 492
+++ RN D L L+ + G DL ++ A + +
Sbjct: 722 ---------RELSFAPRN----------DLSLSSLSLQSAGLTPRDLISIVENAKTLAVD 762
Query: 493 RLIKEGKI-NPEAETIPREVLEELKVTKADFYEALKMVEPSALREV-LIEVPNVHWDDIG 550
R+ K N E + +K T D +++ + +PNV W+D+G
Sbjct: 763 RVESLAKHHNVSFENMVYSSGGYIKFTPEDVEKSINTARNKFSDSIGAPRIPNVKWEDVG 822
Query: 551 GLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFI 610
GL+ VK E+ + ++ P+K+P+ F GI G+L YGPPGTGKTLLAKA+AT NF
Sbjct: 823 GLDVVKDEILDTIDMPMKHPELFSN-GIKKRSGILFYGPPGTGKTLLAKAIATNFALNFF 881
Query: 611 AIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGT-AEGEKVTDRII 669
+++GPE+L+ ++GESE +R++F++AR A P ++F DE+D++AP RG + V DRI+
Sbjct: 882 SVKGPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKRGNQGDSGGVMDRIV 941
Query: 670 NQLLTEMDGLV---ENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD-EKARFEIF 725
+QLL E+DG+ GV V+ ATNRPD+LD ALLRPGRFD+++ + D + + +I
Sbjct: 942 SQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSDTHEKQSKIM 1001
Query: 726 KVHTRGMPLADDVDLKELARRTE-GYTGADIAAVCREAAMNALRRAV------AKLSPEE 778
+ +R L VDL ++A +TGAD A+C +A +NA+ R K EE
Sbjct: 1002 EALSRKFHLHPSVDLDKVAESCPFTFTGADFYALCSDAMLNAMTRIANTVDEKIKRYNEE 1061
Query: 779 LEEESEKFLK------------SLIVTRKDFEVALKKVKPSVTKYMMEYY----RQFEES 822
L E+S+ + ++VT +DF+ + K++ PSV+ +++Y + FE
Sbjct: 1062 LPEKSQVSTRWWFDNVATKEDIDVLVTLEDFDKSRKELVPSVSAEELDHYLRVRQNFEGG 1121
Query: 823 RKRMVGESTGREPDYFTG 840
+++ V + G+ + G
Sbjct: 1122 KEKKVVQENGQTEHFSNG 1139
Score = 180 bits (451), Expect = 7e-44
Identities = 91/212 (42%), Positives = 138/212 (64%), Gaps = 7/212 (3%)
Query: 205 KIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAK 264
+IP V +ED+GGL ++I + +++P+KHPELF GI+ G+L YGPPGTGKTLLAK
Sbjct: 812 RIPNVKWEDVGGLDVVKDEILDTIDMPMKHPELFSN-GIKKRSGILFYGPPGTGKTLLAK 870
Query: 265 AVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--E 322
A+A F ++ GPE+++ Y GESE +R++F+ A + P ++F DE+D++APKR +
Sbjct: 871 AIATNFALNFFSVKGPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKRGNQ 930
Query: 323 EVVGEVEKRVVSQLLTLMDGLK---SRGKVIVIAATNRPDALDPALRRPGRFDREIEVGV 379
G V R+VSQLL +DG+ V V+ ATNRPD LD AL RPGRFD+ + +GV
Sbjct: 931 GDSGGVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGV 990
Query: 380 PD-KQGRKEILQIHTRGMPIEPDFEKETVIKA 410
D + + +I++ +R + P + + V ++
Sbjct: 991 SDTHEKQSKIMEALSRKFHLHPSVDLDKVAES 1022
>sp|O13764|PEX6_SCHPO PROBABLE PEROXIN-6 >gi|7492793|pir||T37816 probable peroxin-6, AAA
family atpase - fission yeast (Schizosaccharomyces
pombe) >gi|2370473|emb|CAB11501.1| (Z98849) putative
peroxin-6, AAA family atpase [Schizosaccharomyces pombe]
Length = 948
Score = 265 bits (669), Expect = 2e-69
Identities = 189/585 (32%), Positives = 298/585 (50%), Gaps = 88/585 (15%)
Query: 250 LLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAII 309
LL+G P TGKT + VA+ +A I+ E E +L + ++ AII
Sbjct: 426 LLHGNPFTGKTKAVEEVASLFSAPVFTISSYEFADATADHLEAKLDMFVQNVVKSPCAII 485
Query: 310 FIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKS-RGKVIVIAATNRPDALDPALRRP 368
F+ ++D ++ +E + + LL+ +D +KS +G+ IVI + + +
Sbjct: 486 FVKDLDVLSISSDEGNIVPGSKSIQILLSKIDLVKSPQGRYIVIGTCHSIEKIP------ 539
Query: 369 GRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKI 428
EIL E FE + ELE D+R + KI
Sbjct: 540 -----------------YEILS--------ESFFELK-----FSELEMDERLELLKIYA- 568
Query: 429 IEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAM 488
N+ I+ R L D L T+ +L L
Sbjct: 569 --------------------NNVIIDKRISLKDVALK-----TNSMSFGELECLPDHMTK 603
Query: 489 VVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDD 548
+ R+ + G N +L +T+ D ++ + + VP V+WDD
Sbjct: 604 AAVDRIKRTGYDNDSI------ILSGPIITEQDVDVSINRIRKEK-SNTIFTVPKVNWDD 656
Query: 549 IGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQAN 608
IGGLE+ K LR+ ++ PL++P+ F + G+ P GVLLYGPPGTGKTLLAKAVATE
Sbjct: 657 IGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKAVATELSLE 715
Query: 609 FIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARG-TAEGEKVTDR 667
F++I+GPE+L+ +VGESE +R +F KAR +SP +IF DE+D+IAP RG +++ V DR
Sbjct: 716 FVSIKGPELLNMYVGESEANVRNVFEKARNSSPCVIFFDELDSIAPHRGNSSDSGNVMDR 775
Query: 668 IINQLLTEMDGLVE--NSGVVVIAATNRPDILDPALLRPGRFDRLILVPA-PDEKARFEI 724
+++QLL E+D + + N V VI ATNRPD+LDP+LLRPGRFD+L+ + E+++ +
Sbjct: 776 VVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLVYLGINKSEESKASM 835
Query: 725 FKVHTRGMPLADDVDLKELARRTE-GYTGADIAAVCREAAMNALRRAV-----------A 772
+ T+ L + +DL E+A+ +TGAD+ A+C +A ++A++R
Sbjct: 836 LRALTKTFKLDETIDLNEIAKNCHPNFTGADMYALCSDAVLSAIKRKTNEIDLLIQASGT 895
Query: 773 KLSPEELEEESE-KFLKSLIVTRKDFEVALKKVKPSVTKYMMEYY 816
LS EE + +E + L +T++DF +LKK++PS+++ + Y
Sbjct: 896 DLSTEEFFKRNENQDSLELRITKEDFLTSLKKLRPSISEQELHRY 940
Score = 190 bits (478), Expect = 5e-47
Identities = 104/231 (45%), Positives = 152/231 (65%), Gaps = 12/231 (5%)
Query: 190 TEVEVLPQAVEVREEK------IPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGI 243
TE +V +R+EK +P+V ++DIGGL+EA +R+ ++LPL+ PELF + G+
Sbjct: 627 TEQDVDVSINRIRKEKSNTIFTVPKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GL 685
Query: 244 EPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEE 303
+P GVLLYGPPGTGKTLLAKAVA E + F++I GPE+++ Y GESE +R +F++A
Sbjct: 686 KPRSGVLLYGPPGTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARN 745
Query: 304 NAPAIIFIDEIDAIAPKR--EEVVGEVEKRVVSQLLTLMDGL-KSRGK-VIVIAATNRPD 359
++P +IF DE+D+IAP R G V RVVSQLL +D + K K V VI ATNRPD
Sbjct: 746 SSPCVIFFDELDSIAPHRGNSSDSGNVMDRVVSQLLAELDSISKDNNKYVFVIGATNRPD 805
Query: 360 ALDPALRRPGRFDREIEVGV-PDKQGRKEILQIHTRGMPIEPDFEKETVIK 409
LDP+L RPGRFD+ + +G+ ++ + +L+ T+ ++ + + K
Sbjct: 806 LLDPSLLRPGRFDKLVYLGINKSEESKASMLRALTKTFKLDETIDLNEIAK 856
>gb|AAF58736.1| (AE003828) CG11919 gene product [Drosophila melanogaster]
Length = 897
Score = 264 bits (667), Expect = 3e-69
Identities = 184/585 (31%), Positives = 309/585 (52%), Gaps = 67/585 (11%)
Query: 250 LLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAII 309
LL G G+GK+ L AVA E + + EI+S+ +E +L+ +F +++ P +I
Sbjct: 365 LLQGERGSGKSKLVSAVAQELGMHIYGADCAEIVSQVPSHTEMKLKAVFAKSQVCEPLMI 424
Query: 310 FIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKV--IVIAATNRPDALDPALRR 367
+ E G + R++S + L +R + IV+ A L P ++
Sbjct: 425 CFHNFEIFGIDNE---GNEDLRLLSAFHVQVQELFNRDRKHPIVVVALTSDRHLKPMIQ- 480
Query: 368 PGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKK 427
G F I + +P K+ R EIL R M + F +I K +E+ F +E +
Sbjct: 481 -GLFLEIINIDMPSKEERFEIL----RWMHVRETFND--IIYNQKAIEQLPLFSRENQSQ 533
Query: 428 IIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAA 487
+ ++S + RE N+ L ++A + GF+ DL L A
Sbjct: 534 FMPRISPS---------WRETLNV------------LQDVAAKSQGFLLGDLQLLYDNAV 572
Query: 488 MVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWD 547
+ +R + G+ + + L +++ + AD A K VP V+W
Sbjct: 573 RMKIRNRL--GRTTLDMSHFAKN-LTDMQSSFADSLGAPK-------------VPKVYWS 616
Query: 548 DIGGLEDVKQELREAVEWPLKYP----KAFKRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
DIGGL +K E++ ++ PLK+ K +R G+LLYGPPGTGKTL+AKAVAT
Sbjct: 617 DIGGLAKLKDEIQSSIGLPLKHVHLMGKNLRR------SGILLYGPPGTGKTLVAKAVAT 670
Query: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA-EGE 662
E +F++++GPE+L+ +VG+SE+ +RE+F +AR A+P ++F+DE+D++AP RG A +
Sbjct: 671 ECNLSFLSVQGPELLNMYVGQSEQNVREVFSRARSAAPCVLFLDELDSLAPNRGVAGDSG 730
Query: 663 KVTDRIINQLLTEMDGLVE---NSGVVVIAATNRPDILDPALLRPGRFDRLILV-PAPDE 718
V DR+++QLL EMDG+ + + + ++AATNRPD++DPALLRPGRFD+L V P
Sbjct: 731 GVMDRVVSQLLAEMDGMSDGDTSKPIFILAATNRPDLIDPALLRPGRFDKLFYVGPCSTA 790
Query: 719 KARFEIFKVHTRGMPLADDVDLKELARRTEG-YTGADIAAVCREAAMNALRRAVAKLSPE 777
+ + + + T+ L VD++++A R + +GAD+ ++C A ++A+RR +
Sbjct: 791 EDKAAVLRAQTQRFALDAGVDMEQIAERLKSEMSGADLYSICSNAWLSAVRRTIDGHLSG 850
Query: 778 ELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEES 822
+ E+ E +++IV +DF + K PS++ +EY+ + S
Sbjct: 851 TISEK-ELVPENVIVQEEDFTKSFNKFVPSISAKDLEYFNNLKAS 894
Score = 175 bits (439), Expect = 2e-42
Identities = 92/214 (42%), Positives = 136/214 (62%), Gaps = 8/214 (3%)
Query: 205 KIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAK 264
K+P+V + DIGGL + ++I+ + LPLKH L + G+LLYGPPGTGKTL+AK
Sbjct: 609 KVPKVYWSDIGGLAKLKDEIQSSIGLPLKHVHLMGKNLRR--SGILLYGPPGTGKTLVAK 666
Query: 265 AVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEV 324
AVA E N F+++ GPE+++ Y G+SE+ +RE+F A AP ++F+DE+D++AP R
Sbjct: 667 AVATECNLSFLSVQGPELLNMYVGQSEQNVREVFSRARSAAPCVLFLDELDSLAPNRGVA 726
Query: 325 --VGEVEKRVVSQLLTLMDGLK---SRGKVIVIAATNRPDALDPALRRPGRFDREIEVG- 378
G V RVVSQLL MDG+ + + ++AATNRPD +DPAL RPGRFD+ VG
Sbjct: 727 GDSGGVMDRVVSQLLAEMDGMSDGDTSKPIFILAATNRPDLIDPALLRPGRFDKLFYVGP 786
Query: 379 VPDKQGRKEILQIHTRGMPIEPDFEKETVIKALK 412
+ + +L+ T+ ++ + E + + LK
Sbjct: 787 CSTAEDKAAVLRAQTQRFALDAGVDMEQIAERLK 820
>pir||G71242 probable 26S proteinase regulatory subunit - Pyrococcus horikoshii
>gi|3256587|dbj|BAA29270.1| (AP000001) 399aa long
hypothetical 26S protease regulatory subunit [Pyrococcus
horikoshii]
Length = 399
Score = 263 bits (664), Expect = 8e-69
Identities = 140/260 (53%), Positives = 179/260 (68%), Gaps = 3/260 (1%)
Query: 530 EPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGP 589
+P+ L +IE PNV ++DIGGL+ QELREA+E PLK+P+ F+ +GI PPKGVLLYGP
Sbjct: 123 DPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGP 182
Query: 590 PGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEI 649
PG GKTL+AKA+A E A FI + G E++ K++GE + + E+F A++ +P IIFIDEI
Sbjct: 183 PGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEI 242
Query: 650 DAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRF 707
DAI R T GE+ +R + QLL EMDG V VIAATNRPDILDPALLRPGRF
Sbjct: 243 DAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRF 302
Query: 708 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNAL 767
DRLI VP PD + R EI KVHTR M L VDL+ +A TEG +GAD+ A+ EA M A+
Sbjct: 303 DRLIEVPLPDFEGRLEILKVHTRRMKL-KGVDLRAIAEMTEGASGADLKAIATEAGMFAI 361
Query: 768 RRAVAKLSPEELEEESEKFL 787
R ++ E+ + +K L
Sbjct: 362 RERRTYVTQEDFLKAVDKVL 381
Score = 241 bits (608), Expect = 3e-62
Identities = 130/218 (59%), Positives = 157/218 (71%), Gaps = 12/218 (5%)
Query: 192 VEVLPQA-------VEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIE 244
VE+LP + EV E P VTY DIGGLK+ ++++RE +ELPLKHPELFE +GI+
Sbjct: 115 VEILPTSKDPTVLGFEVIER--PNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGID 172
Query: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304
PPKGVLLYGPPG GKTL+AKA+A+E NA FI + G E++ KY GE + E+F+ A+E
Sbjct: 173 PPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEK 232
Query: 305 APAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDAL 361
AP IIFIDEIDAI KR E GE E R + QLL MDG RG V VIAATNRPD L
Sbjct: 233 APTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDIL 292
Query: 362 DPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIE 399
DPAL RPGRFDR IEV +PD +GR EIL++HTR M ++
Sbjct: 293 DPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKLK 330
>pir||H75207 26s proteinase regulatory chain 4 PAB2233 - Pyrococcus abyssi
(strain Orsay) >gi|5457620|emb|CAB49111.1| (AJ248283)
26S protease regulatory subunit 4 [Pyrococcus abyssi]
Length = 399
Score = 263 bits (664), Expect = 8e-69
Identities = 147/295 (49%), Positives = 194/295 (64%), Gaps = 9/295 (3%)
Query: 495 IKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLED 554
I+ K+ P A R L++ + + + K +P+ L +IE PNV ++DIGGL+
Sbjct: 94 IERDKLRPGA----RVALDQRTMAIIELLPSSK--DPTVLGFEVIERPNVTYNDIGGLKK 147
Query: 555 VKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRG 614
QELREA+E PLK+P+ F+ +GI PPKGVLLYGPPG GKTL+AKA+A E A FI + G
Sbjct: 148 QLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVG 207
Query: 615 PEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR--GTAEGEKVTDRIINQL 672
E++ K++GE + + E+F A++ +P IIFIDEIDAI R T GE+ +R + QL
Sbjct: 208 SELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQL 267
Query: 673 LTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGM 732
L EMDG V VIAATNRPDILDPALLRPGRFDRLI VP PD + R EI KVHTR M
Sbjct: 268 LAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRM 327
Query: 733 PLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFL 787
L +VDL+ +A TEG +GAD+ A+ EA M A+R ++ E+ + +K L
Sbjct: 328 KL-KNVDLRVIAEITEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKAVDKVL 381
Score = 240 bits (606), Expect = 5e-62
Identities = 123/196 (62%), Positives = 148/196 (74%), Gaps = 3/196 (1%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAV 266
P VTY DIGGLK+ ++++RE +ELPLKHPELFE +GI+PPKGVLLYGPPG GKTL+AKA+
Sbjct: 135 PNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAL 194
Query: 267 ANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEV 324
A+E NA FI + G E++ KY GE + E+F+ A+E AP IIFIDEIDAI KR E
Sbjct: 195 AHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETT 254
Query: 325 VGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQ 383
GE E R + QLL MDG RG V VIAATNRPD LDPAL RPGRFDR IEV +PD +
Sbjct: 255 GGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFE 314
Query: 384 GRKEILQIHTRGMPIE 399
GR EIL++HTR M ++
Sbjct: 315 GRLEILKVHTRRMKLK 330
>gb|AAF20144.1|AF208231_1 (AF208231) peroxisome assembly protein Pex1p [Yarrowia lipolytica]
Length = 1023
Score = 262 bits (662), Expect = 1e-68
Identities = 190/600 (31%), Positives = 294/600 (48%), Gaps = 84/600 (14%)
Query: 248 GVLLYGPPGTGKTLLAKAVANE---ANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304
G L YG G+GK+ + + E ++ + ++I I E L + F EA
Sbjct: 430 GCLDYGSRGSGKSAVLNHIKKECKVSHTHTVSIACGLIAQDRVQAVREILTKAFLEASWF 489
Query: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLT--LMDGLKSRGKVIVIAATNRPDALD 362
+P+++F+D+IDA+ P E R ++QL + +KSR V V+A+ ++L
Sbjct: 490 SPSVLFLDDIDALMPAEVEHADSSRTRQLTQLFLELALPIMKSR-HVSVVASAQAKESLH 548
Query: 363 PALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDK 422
L F+ + PDK+ R IL
Sbjct: 549 MNLVTGHVFEELFHLKSPDKEARLAILS-------------------------------- 576
Query: 423 EKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAAL 482
E +K + + VS +++ D+L E+A G++ DL L
Sbjct: 577 EAVKLMDQNVSFSQN-----DVL--------------------EIASQVDGYLPGDLWTL 611
Query: 483 AREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVP 542
+ A + R I+ G NP + ADF +AL+ PS+LR V ++
Sbjct: 612 SERAQHEMALRQIEIGLENPSIQL-------------ADFMKALEDFVPSSLRGVKLQKS 658
Query: 543 NVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVA 602
NV W+DIGGL++ K L E +EWP KY F + G+LLYG PG GKT LA AVA
Sbjct: 659 NVKWNDIGGLKETKAVLLETLEWPTKYAPIFASCPLRLRSGLLLYGYPGCGKTYLASAVA 718
Query: 603 TESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGE 662
+ NFI+I+GPE+L+K++G SE+ +RE+F A+ A P I+F DE D+IAP RG +
Sbjct: 719 AQCGLNFISIKGPEILNKYIGASEQSVRELF-GAQAAKPCILFFDEFDSIAPKRG-HDST 776
Query: 663 KVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARF 722
VTDR++NQ+LT+MDG GV V+AAT+RPD++DPALLRPGR D++++ P + R
Sbjct: 777 GVTDRVVNQMLTQMDGAEGLDGVYVLAATSRPDLIDPALLRPGRLDKMLICDLPSYEDRL 836
Query: 723 EIFKVHTRG-MPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAV-----AKLSP 776
+I + G M L +V+L+ +A RT+G++GAD+ AV A + A+ V
Sbjct: 837 DILRAIVDGKMHLDGEVELEYVASRTDGFSGADLQAVMFNAYLEAIHEVVDVADDTAADT 896
Query: 777 EELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGESTGREPD 836
LE++ +F ++ + K A++ + + E R + G S G + D
Sbjct: 897 PALEDKRLEFFQTTLGDAKKDPAAVQNEVMNARAAVAEKARVTAKLEALFKGMSVGVDND 956
Score = 160 bits (401), Expect = 5e-38
Identities = 91/200 (45%), Positives = 123/200 (61%), Gaps = 2/200 (1%)
Query: 209 VTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVAN 268
V + DIGGLKE + E +E P K+ +F + G+LLYG PG GKT LA AVA
Sbjct: 660 VKWNDIGGLKETKAVLLETLEWPTKYAPIFASCPLRLRSGLLLYGYPGCGKTYLASAVAA 719
Query: 269 EANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEV 328
+ FI+I GPEI++KY G SE+ +RE+F A+ P I+F DE D+IAPKR V
Sbjct: 720 QCGLNFISIKGPEILNKYIGASEQSVRELF-GAQAAKPCILFFDEFDSIAPKRGHDSTGV 778
Query: 329 EKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEI 388
RVV+Q+LT MDG + V V+AAT+RPD +DPAL RPGR D+ + +P + R +I
Sbjct: 779 TDRVVNQMLTQMDGAEGLDGVYVLAATSRPDLIDPALLRPGRLDKMLICDLPSYEDRLDI 838
Query: 389 LQIHTRG-MPIEPDFEKETV 407
L+ G M ++ + E E V
Sbjct: 839 LRAIVDGKMHLDGEVELEYV 858
>dbj|BAB09996.1| (AB006697) contains similarity to ATPase; peroxisome biosynthesis
protein~gene_id:MAH20.3 [Arabidopsis thaliana]
Length = 1125
Score = 256 bits (646), Expect = 1e-66
Identities = 192/609 (31%), Positives = 300/609 (48%), Gaps = 98/609 (16%)
Query: 238 FERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREI 297
F + I P +L+YGPPG+GKT+LA+A A KY+ E ++ L
Sbjct: 585 FSKFKIPSPGHILIYGPPGSGKTILARAAA-----------------KYFEEQKDLL--- 624
Query: 298 FKEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNR 357
A + + +A ++ + + V V+++ GL+ VI++
Sbjct: 625 ---------AHVILVSCSTLALEKVQHIHHVLSSVIAE------GLEHAPSVIIL----- 664
Query: 358 PDALDPALRRPGRFD-REIEVGVP----------DKQGRKEILQIHTRGMPIEPDFEKET 406
D LD + + + VGV D G E P+ ++
Sbjct: 665 -DDLDSIISSSSDTEGTQASVGVTMLTKFLTDVIDDYG--EYRNSSCGIGPLAFVASVQS 721
Query: 407 VIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLID---KL 463
+ + + L RFD ++ + A SE IL+ E++ +L+D +
Sbjct: 722 LEQIPQTLSSSGRFDFH-----VQLAAPATSERGA--ILKH------EIQKRLLDCSEDI 768
Query: 464 LDELAEVTHGFVGADLAALAREAAMVVL-RRLIKEGKINPEAETIPREVLEELKVTKADF 522
L LA G+ DL L A + R L E I+ + + K DF
Sbjct: 769 LLNLAAKCEGYDAYDLEILVDRAVHAAIGRHLPLESNIS------------KYNLVKEDF 816
Query: 523 YEALKMVEPSALREVL---IEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGIT 579
A+ P A+R++ E + W+D+GG+ D+K ++E +E P K+PK F + +
Sbjct: 817 TRAMHDFVPVAMRDITKSASEGGRLGWEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLR 876
Query: 580 PPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQA 639
VLLYGPPG GKT + A A FI+++GPE+L+K++G SE+ +R+IF KA A
Sbjct: 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAA 936
Query: 640 SPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDP 699
+P I+F DE D+IAP RG + VTDR++NQ LTE+DG+ +GV V AAT+RPD+LDP
Sbjct: 937 APCILFFDEFDSIAPKRG-HDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDP 995
Query: 700 ALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVC 759
ALLRPGR DRL+L P R EI V +R + +ADD+DL+ +A TEG++GAD+ A+
Sbjct: 996 ALLRPGRLDRLLLCDFPSPPERLEILTVLSRKLLMADDIDLEPIALMTEGFSGADLQALL 1055
Query: 760 REAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVT----KYMMEY 815
+A + A+ + + E+ + + I+T + K KPSV+ + + +
Sbjct: 1056 SDAQLAAVHEYLNR-------EDKPETGTTPIITDPLLKSIASKTKPSVSETEKQKLYDI 1108
Query: 816 YRQFEESRK 824
Y QF +SRK
Sbjct: 1109 YSQFLDSRK 1117
Score = 169 bits (425), Expect = 8e-41
Identities = 88/197 (44%), Positives = 123/197 (61%)
Query: 211 YEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 270
+ED+GG+ + I+EM+ELP K P++F + + VLLYGPPG GKT + A A
Sbjct: 843 WEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902
Query: 271 NAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEK 330
+ FI++ GPE+++KY G SE+ +R+IF +A AP I+F DE D+IAPKR V
Sbjct: 903 SLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCILFFDEFDSIAPKRGHDNTGVTD 962
Query: 331 RVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQ 390
RVV+Q LT +DG++ V V AAT+RPD LDPAL RPGR DR + P R EIL
Sbjct: 963 RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDPALLRPGRLDRLLLCDFPSPPERLEILT 1022
Query: 391 IHTRGMPIEPDFEKETV 407
+ +R + + D + E +
Sbjct: 1023 VLSRKLLMADDIDLEPI 1039
>gb|AAK40609.1| AAA family ATPase [Sulfolobus solfataricus]
Length = 393
Score = 256 bits (646), Expect = 1e-66
Identities = 164/380 (43%), Positives = 227/380 (59%), Gaps = 35/380 (9%)
Query: 421 DKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLA 480
D+ ++ +++E+ K KS + + LR++ N Y K++ L E + V D
Sbjct: 15 DEVQLVRLLEE--KIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLD---VLPDGR 69
Query: 481 ALAREA---------AMVVLRRLIKEG---KINPEAETIPREVLEELKVTKADFYEALKM 528
L R + A + ++LIK G +N TI EVL + +
Sbjct: 70 VLVRSSSGPNLVVNIASHIDQKLIKPGISVALNQRGSTI-LEVLPQKE------------ 116
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
+P +IE PNV + +IGGLE+ +ELRE VE PLK P+ F+ +G+ PPKGVLLYG
Sbjct: 117 -DPIVKTMEIIERPNVTYSEIGGLEEQIRELREVVELPLKNPEIFREIGVEPPKGVLLYG 175
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PPGTGKT+LAKAVATES A FI + E K+VGE + +RE+F A++ +P+IIFIDE
Sbjct: 176 PPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDE 235
Query: 649 IDAIAPAR---GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPG 705
IDAI R GT+ GE+ R + QLL E+DG V +IAATNR DILDPALLRPG
Sbjct: 236 IDAIGAKRIDIGTS-GEREIQRTLMQLLAELDGFDPLDNVKIIAATNRIDILDPALLRPG 294
Query: 706 RFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMN 765
RFDR+I VP PD K R EIF ++ + M + D+++L+ L++ TEG++GADI VC EAA
Sbjct: 295 RFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEAAYM 354
Query: 766 ALRRAVAKLSPEELEEESEK 785
A+R K++ +L E K
Sbjct: 355 AIRDGRNKVTMNDLVEAINK 374
Score = 225 bits (567), Expect = 2e-57
Identities = 132/288 (45%), Positives = 179/288 (61%), Gaps = 25/288 (8%)
Query: 189 NTEVEVLPQAVE--VREEKI---PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGI 243
+T +EVLPQ + V+ +I P VTY +IGGL+E I ++RE+VELPLK+PE+F +G+
Sbjct: 106 STILEVLPQKEDPIVKTMEIIERPNVTYSEIGGLEEQIRELREVVELPLKNPEIFREIGV 165
Query: 244 EPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEE 303
EPPKGVLLYGPPGTGKT+LAKAVA E+NA FI + E K+ GE +RE+F+ A+
Sbjct: 166 EPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKR 225
Query: 304 NAPAIIFIDEIDAIAPKREEV--VGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDA 360
AP+IIFIDEIDAI KR ++ GE E +R + QLL +DG V +IAATNR D
Sbjct: 226 KAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFDPLDNVKIIAATNRIDI 285
Query: 361 LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFE----------------K 404
LDPAL RPGRFDR IEV +PD +GR EI I+ + M IE + K
Sbjct: 286 LDPALLRPGRFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIK 345
Query: 405 ETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLY 452
++A +D R +K + ++E ++K + + ++E R Y
Sbjct: 346 NVCVEAAYMAIRDGR-NKVTMNDLVEAINKINVKRNKMESMKERREKY 392
>sp|O67077|FTSH_AQUAE CELL DIVISION PROTEIN FTSH HOMOLOG >gi|7446574|pir||B70381 cell
division protein FtsH - Aquifex aeolicus
>gi|2983448|gb|AAC07029.1| (AE000714) cell division
protein FtsH [Aquifex aeolicus]
Length = 634
Score = 254 bits (642), Expect = 3e-66
Identities = 131/267 (49%), Positives = 181/267 (67%), Gaps = 6/267 (2%)
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
E P V + D+ G+E+VK+E++E +E+ LK P F++LG PPKGVLLYG PG GKTLLAK
Sbjct: 148 EKPKVTFKDVAGIEEVKEEVKEIIEY-LKDPVKFQKLGGRPPKGVLLYGEPGVGKTLLAK 206
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA 659
A+A E+ FI++ G + + +VG R+R++F A++ +P IIFIDEIDA+ ARG
Sbjct: 207 AIAGEAHVPFISVSGSDFVEMFVGVGAARVRDLFETAKKHAPCIIFIDEIDAVGRARGAI 266
Query: 660 E---GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAP 716
G ++ +NQLL EMDG + G++VIAATNRPDILDPALLRPGRFDR I +P P
Sbjct: 267 PVGGGHDEREQTLNQLLVEMDGFDTSDGIIVIAATNRPDILDPALLRPGRFDRQIFIPKP 326
Query: 717 DEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSP 776
D + R+EI KVH R LA DVDL+ +AR T G+TGAD+ + EAA+ A R+ +++
Sbjct: 327 DVRGRYEILKVHARNKKLAKDVDLEFVARATPGFTGADLENLLNEAALLAARKGKEEITM 386
Query: 777 EELEEESEKFLKSLIVTRKDFEVALKK 803
EE+EE ++ L RK ++ K+
Sbjct: 387 EEIEEALDRITMGL--ERKGMTISPKE 411
Score = 199 bits (502), Expect = 8e-50
Identities = 102/211 (48%), Positives = 148/211 (69%), Gaps = 5/211 (2%)
Query: 204 EKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLA 263
E+ P+VT++D+ G++E E+++E++E LK P F++LG PPKGVLLYG PG GKTLLA
Sbjct: 147 EEKPKVTFKDVAGIEEVKEEVKEIIEY-LKDPVKFQKLGGRPPKGVLLYGEPGVGKTLLA 205
Query: 264 KAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREE 323
KA+A EA+ FI+++G + + + G R+R++F+ A+++AP IIFIDEIDA+ R
Sbjct: 206 KAIAGEAHVPFISVSGSDFVEMFVGVGAARVRDLFETAKKHAPCIIFIDEIDAVGRARGA 265
Query: 324 V-VG---EVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGV 379
+ VG + ++ ++QLL MDG + +IVIAATNRPD LDPAL RPGRFDR+I +
Sbjct: 266 IPVGGGHDEREQTLNQLLVEMDGFDTSDGIIVIAATNRPDILDPALLRPGRFDRQIFIPK 325
Query: 380 PDKQGRKEILQIHTRGMPIEPDFEKETVIKA 410
PD +GR EIL++H R + D + E V +A
Sbjct: 326 PDVRGRYEILKVHARNKKLAKDVDLEFVARA 356
>pir||F72504 probable 26S proteinase regulatory subunit APE2012 - Aeropyrum
pernix (strain K1) >gi|5105710|dbj|BAA81022.1|
(AP000063) 409aa long hypothetical 26S protease
regulatory subunit [Aeropyrum pernix]
Length = 409
Score = 254 bits (642), Expect = 3e-66
Identities = 162/386 (41%), Positives = 231/386 (58%), Gaps = 29/386 (7%)
Query: 413 ELEKDDRFDKEKIKKII-EKVSKAKSEEEIK-DILREDRNLYIEVRTKLIDKLLDELAEV 470
E + + R K+K++ + EK+S K E K +I + YIE ++ +++D+ V
Sbjct: 20 ERDVEIRILKDKVRSLTKEKISLQKELEYYKNEITKLLSPPYIEA---VVLEVIDDNRVV 76
Query: 471 THGFVGADLAALAREAAMVVLRRLIKEGKI---NPEAETIPREVLEELKVTKADFYEALK 527
G +L A V R +K G I N TI + V + +K
Sbjct: 77 VKSSTGPNLIV---NVAAGVDARSLKPGAIVALNNRGSTI-------VDVLPGRYDPLVK 126
Query: 528 MVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLY 587
+E E P V + D+GGLE+ +E+ EAV P+K P F+ LGI PPKGVLL+
Sbjct: 127 AMEVE-------ERPKVFFKDVGGLEEQIREIYEAVVLPIKNPHLFRELGIDPPKGVLLH 179
Query: 588 GPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFID 647
GPPGTGKTLLAKAVA E++A FI + G E+++K++GE + +REIFR AR+ +P+I+FID
Sbjct: 180 GPPGTGKTLLAKAVAGETEATFIRVVGSELVNKFIGEGARLVREIFRLAREKAPSILFID 239
Query: 648 EIDAIAPAR---GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRP 704
EIDAIA R GT+ G++ R + QLL E+DG V VIAATNR D++DPA+LRP
Sbjct: 240 EIDAIASKRVDIGTS-GDREVQRTMLQLLAELDGFDPLDNVKVIAATNRLDLIDPAVLRP 298
Query: 705 GRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAM 764
GRFDR+I VP P + R EI +HTR +A DVDL+ +A+ TEG++GAD+ AV EA
Sbjct: 299 GRFDRIIEVPLPSLRGRLEILGIHTRKAKMAPDVDLEAIAKLTEGFSGADLKAVVVEAGY 358
Query: 765 NALRRAVAKLSPEELEEESEKFLKSL 790
NA+RR ++ +++ + EK +L
Sbjct: 359 NAIRRGSRVITMDDMIKAVEKVKAAL 384
Score = 222 bits (561), Expect = 9e-57
Identities = 124/231 (53%), Positives = 160/231 (68%), Gaps = 12/231 (5%)
Query: 189 NTEVEVLP-------QAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERL 241
+T V+VLP +A+EV E P+V ++D+GGL+E I +I E V LP+K+P LF L
Sbjct: 111 STIVDVLPGRYDPLVKAMEVEER--PKVFFKDVGGLEEQIREIYEAVVLPIKNPHLFREL 168
Query: 242 GIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEA 301
GI+PPKGVLL+GPPGTGKTLLAKAVA E A FI + G E+++K+ GE +REIF+ A
Sbjct: 169 GIDPPKGVLLHGPPGTGKTLLAKAVAGETEATFIRVVGSELVNKFIGEGARLVREIFRLA 228
Query: 302 EENAPAIIFIDEIDAIAPKREEV--VGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRP 358
E AP+I+FIDEIDAIA KR ++ G+ E +R + QLL +DG V VIAATNR
Sbjct: 229 REKAPSILFIDEIDAIASKRVDIGTSGDREVQRTMLQLLAELDGFDPLDNVKVIAATNRL 288
Query: 359 DALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIK 409
D +DPA+ RPGRFDR IEV +P +GR EIL IHTR + PD + E + K
Sbjct: 289 DLIDPAVLRPGRFDRIIEVPLPSLRGRLEILGIHTRKAKMAPDVDLEAIAK 339
>gb|AAD52811.1|AF129873_1 (AF129873) peroxin-1 [Pichia angusta]
Length = 1074
Score = 253 bits (640), Expect = 5e-66
Identities = 198/699 (28%), Positives = 325/699 (46%), Gaps = 141/699 (20%)
Query: 193 EVLPQA--VEVRE--------EKIPEVTYEDIGGLKEA-IEKIREMVELPLK-HPELFER 240
++LPQ +E+R+ EK+P D E+ +E+ E +LP+ H EL R
Sbjct: 430 DLLPQGGFLELRDGCQWALLGEKLPNFELGDERLKPESFVERQYEQKDLPIVGHKELIAR 489
Query: 241 L--GIEPPKGVLLYGPPGTGKTLLAKAVANEA----NAYFIAINGPEIMSKYYGESEERL 294
+ + +L G G+GKT L VA+ Y IN I + + + L
Sbjct: 490 MVRSVRHGHNCVLSGASGSGKTTLINEVAHRLVTLHGYYSKNINCETISNDNFHAIKTLL 549
Query: 295 REIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVI-VIA 353
E KE ++P+++ ++ +D++ P+ E R VS+ L + +R + I ++
Sbjct: 550 EEAVKEVNWHSPSVLVLENLDSLIPQEMEHGDSGLSRQVSEFLVNSLKVLTRERAISLLC 609
Query: 354 ATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKE 413
++ +AL+ + Q H I+ +F +LK
Sbjct: 610 SSKSKEALNAT-----------------------VFQTHL----IQQEF-------SLKA 635
Query: 414 LEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHG 473
+K+ R KE ++ I + +EEI L+++ T G
Sbjct: 636 PDKELR--KELLRSFINDYNMDLEKEEI----------------------LNDITVETEG 671
Query: 474 FVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSA 533
++ +DL LA + I + ++ + ++F AL+ PS+
Sbjct: 672 YLPSDLKVLADRTFHDYISSKIDK---------------DDFHLRASNFERALQGFVPSS 716
Query: 534 LREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTG 593
LR V ++ V W DIGGL+D K+ L E +EWP KY F + G+LLYG PG G
Sbjct: 717 LRGVKLQKSGVAWSDIGGLKDAKRVLLETLEWPTKYAPIFANCPLRLRSGILLYGYPGCG 776
Query: 594 KTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIA 653
KTLLA AV ++ NFI+I+GPE+L+K++G SE+ IRE+F +A+ A P ++F DE D+IA
Sbjct: 777 KTLLASAVVSQCGLNFISIKGPEILNKYIGASEQSIRELFDRAQSAKPCVLFFDEFDSIA 836
Query: 654 PARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILV 713
P RG + VTDR++NQLLT+MDG GV V+AAT+RPD++D ALLRPGR D+ IL
Sbjct: 837 PKRG-HDSTGVTDRVVNQLLTQMDGAEGLDGVYVLAATSRPDLIDSALLRPGRLDKSILC 895
Query: 714 PAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAK 773
PD + R +I + ++++ L AR+ EGY+GAD+ A A + A+ + +
Sbjct: 896 DLPDYENRLDILQTVASKFHVSEECRLDHFARKLEGYSGADLQAFVYNAYLKAVHDNLDQ 955
Query: 774 L--------------------------------------------SPEELEEESEKFLKS 789
L S ++ E++S++
Sbjct: 956 LTHANEGTTERKIEFFSMLKNLQPSGNIAGKIDTICKNLHVTDLSSWDDAEQDSDRKPNQ 1015
Query: 790 LIVTRKDFEVALKKVKPSVT----KYMMEYYRQFEESRK 824
+++ FE AL++ K S++ + Y QF + ++
Sbjct: 1016 IVICNSHFETALEETKKSISNKELRNFARIYSQFVDGKR 1054
>gb|AAB46346.1| (AC000064) ATPase; strong similarity to peroxisome biosynthesis
protein PAS1 (PID:g1172019); coded for by human cDNA
C04279 (NID:g1467530) [Homo sapiens]
Length = 541
Score = 250 bits (633), Expect = 3e-65
Identities = 146/353 (41%), Positives = 208/353 (58%), Gaps = 40/353 (11%)
Query: 458 KLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKV 517
K D L +A+ T GFV D L A L R ++I E+L +
Sbjct: 69 KFTDLDLQHVAKETGGFVARDFTVLVDRAIHSRLSR-----------QSISTR--EKLVL 115
Query: 518 TKADFYEALKMVEPSALREVLIEVP-NVHWDDIGGLEDVKQELREAVEWPLK-------Y 569
T DF +AL+ P++LR V + P ++ WD IGGL +V+Q L + ++ P K Y
Sbjct: 116 TTLDFQKALRGFLPASLRSVNLHKPRDLGWDKIGGLHEVRQILMDTIQLPAKVCLKKEKY 175
Query: 570 PKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRI 629
P+ F L I G+LLYGPPGTGKTLLA +A ES+ NFI+++GPE+LSK++G SE+ +
Sbjct: 176 PELFANLPIRQRTGILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAV 235
Query: 630 REIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIA 689
R+IF +A+ A P I+F DE ++IAP RG + VTDR++NQLLT++DG+ GV V+A
Sbjct: 236 RDIFIRAQAAKPCILFFDEFESIAPRRG-HDNTGVTDRVVNQLLTQLDGVEGLQGVYVLA 294
Query: 690 ATNRPDILDPALLRPGRFDRLILVPAPDE------------------KARFEIFKVHTRG 731
AT+RPD++DPALLRPGR D+ + P PD+ +R EI V +
Sbjct: 295 ATSRPDLIDPALLRPGRLDKCVYCPPPDQVTISYLESKTQQMLHSFLVSRLEILNVLSDS 354
Query: 732 MPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESE 784
+PLADDVDL+ +A T+ +TGAD+ A+ A + AL + E L +ES+
Sbjct: 355 LPLADDVDLQHVASVTDSFTGADLKALLYNAQLEALHGMLLSKMSEILPDESK 407
Score = 165 bits (414), Expect = 2e-39
Identities = 112/317 (35%), Positives = 164/317 (51%), Gaps = 53/317 (16%)
Query: 201 VREEKIPEVTYEDIGGLKEAIEKIREMVELPLK-------HPELFERLGIEPPKGVLLYG 253
V K ++ ++ IGGL E + + + ++LP K +PELF L I G+LLYG
Sbjct: 135 VNLHKPRDLGWDKIGGLHEVRQILMDTIQLPAKVCLKKEKYPELFANLPIRQRTGILLYG 194
Query: 254 PPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDE 313
PPGTGKTLLA +A E+ FI++ GPE++SKY G SE+ +R+IF A+ P I+F DE
Sbjct: 195 PPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRDIFIRAQAAKPCILFFDE 254
Query: 314 IDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDR 373
++IAP+R V RVV+QLLT +DG++ V V+AAT+RPD +DPAL RPGR D+
Sbjct: 255 FESIAPRRGHDNTGVTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDK 314
Query: 374 EIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVS 433
+ PD + I L + K ++++ S
Sbjct: 315 CVYCPPPD-----------------------QVTISYL----------ESKTQQMLH--S 339
Query: 434 KAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRR 493
S EI ++L + L +V L +A VT F GADL AL A + L
Sbjct: 340 FLVSRLEILNVLSDSLPLADDVD-------LQHVASVTDSFTGADLKALLYNAQLEALHG 392
Query: 494 LIKEGKINPEAETIPRE 510
++ ++ +E +P E
Sbjct: 393 ML----LSKMSEILPDE 405
>sp|P54777|PEX6_RAT PEROXISOME ASSEMBLY FACTOR-2 (PAF-2) (PEROXISOMAL-TYPE ATPASE 1)
(PEROXIN-6) >gi|1127034|dbj|BAA09824.1| (D63673)
peroxisome assembly factor-2 [Rattus norvegicus]
>gi|1586820|prf||2204387A peroxisome assembly factor 2
[Rattus norvegicus]
Length = 978
Score = 249 bits (629), Expect = 1e-64
Identities = 146/361 (40%), Positives = 221/361 (60%), Gaps = 12/361 (3%)
Query: 464 LDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFY 523
L +LA GFV DL AL A+ R IK + E + DF
Sbjct: 620 LSQLARRCAGFVVGDLYALLTHASRAACTR-IKAAGLAMSEEDEGELCAAGFPLLAEDFG 678
Query: 524 EALKMVEPSALREV-LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPK 582
+AL ++ + + V ++P+V W D+GGL+DVK+E+ E ++ PL++P+ LG+
Sbjct: 679 QALDQLQTAHSQAVGAPKIPSVSWHDVGGLQDVKKEILETIQLPLEHPELLS-LGLRR-S 736
Query: 583 GVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPA 642
G+LL+GPPGTGKTLLAKAVATE F++++GPE+++ +VG+SE+ +RE+F +AR A+P
Sbjct: 737 GLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPC 796
Query: 643 IIFIDEIDAIAPARG-TAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPAL 701
IIF DE+D++AP+RG + + V DR+++QLL E+DGL V VI ATNRPD+LDPAL
Sbjct: 797 IIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPAL 856
Query: 702 LRPGRFDRLILVPAPDEKA-RFEIFKVHTRGMPLADDVDLKE-LARRTEGYTGADIAAVC 759
LRPGRFD+L+ V A +++A + + TR L V L L TGAD+ ++C
Sbjct: 857 LRPGRFDKLVFVGASEDRASQLRVLSAITRKFKLEASVSLMNVLDCCPPQLTGADLYSLC 916
Query: 760 REAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQF 819
+A M AL+R V +LEE E +L++T +D A +++PSV++ + Y++
Sbjct: 917 SDAMMTALKRRV-----RDLEEGLEPRSSALLLTMEDLLQAAARLQPSVSEQELLRYKRI 971
Query: 820 E 820
+
Sbjct: 972 Q 972
Score = 190 bits (478), Expect = 5e-47
Identities = 102/198 (51%), Positives = 135/198 (67%), Gaps = 5/198 (2%)
Query: 205 KIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAK 264
KIP V++ D+GGL++ ++I E ++LPL+HPEL LG+ G+LL+GPPGTGKTLLAK
Sbjct: 696 KIPSVSWHDVGGLQDVKKEILETIQLPLEHPELLS-LGLRR-SGLLLHGPPGTGKTLLAK 753
Query: 265 AVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEV 324
AVA E + F+++ GPE+++ Y G+SEE +RE+F A AP IIF DE+D++AP R
Sbjct: 754 AVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRS 813
Query: 325 --VGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGV-PD 381
G V RVVSQLL +DGL S V VI ATNRPD LDPAL RPGRFD+ + VG D
Sbjct: 814 GDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASED 873
Query: 382 KQGRKEILQIHTRGMPIE 399
+ + +L TR +E
Sbjct: 874 RASQLRVLSAITRKFKLE 891
Score = 79.6 bits (193), Expect = 1e-13
Identities = 70/263 (26%), Positives = 118/263 (44%), Gaps = 10/263 (3%)
Query: 546 WDDIG--GLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
WD + GLE + EL ++ L+ +T VLL GPPG+GKT A +
Sbjct: 430 WDSLSPPGLEALVNELCAVLKPHLQPGGTL----LTGTSCVLLQGPPGSGKTTAVTAACS 485
Query: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR-GTAEGE 662
+ + + + + E +++ F +AR+ P ++ + +D + R G E
Sbjct: 486 RLGLHLLKVPCSSLCADSSRTVETKLQTTFSRARRCRPVVLLLTALDLLGRDRDGLGEDA 545
Query: 663 KVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARF 722
+V + + LL E D L ++V+A T+R L P +R F + VP E R
Sbjct: 546 RVVATLRHLLLDE-DPLSRCPPLMVVATTSRVQDL-PTDVRTA-FPHELEVPVLSESQRL 602
Query: 723 EIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEE 782
+ + T +PL +V+L +LARR G+ D+ A+ A+ A R A E+E
Sbjct: 603 SVLQALTAHLPLGQEVNLSQLARRCAGFVVGDLYALLTHASRAACTRIKAAGLAMSEEDE 662
Query: 783 SEKFLKSLIVTRKDFEVALKKVK 805
E + +DF AL +++
Sbjct: 663 GELCAAGFPLLAEDFGQALDQLQ 685
>dbj|BAA24931.1| (D89660) peroxisome assembly factor-2 [Rattus norvegicus]
Length = 978
Score = 249 bits (629), Expect = 1e-64
Identities = 146/361 (40%), Positives = 221/361 (60%), Gaps = 12/361 (3%)
Query: 464 LDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFY 523
L +LA GFV DL AL A+ R IK + E + DF
Sbjct: 620 LSQLARRCAGFVVGDLYALLTHASRAACTR-IKAAGLAMSEEDEGELCAAGFPLLAEDFG 678
Query: 524 EALKMVEPSALREV-LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPK 582
+AL ++ + + V ++P+V W D+GGL+DVK+E+ E ++ PL++P+ LG+
Sbjct: 679 QALDQLQTAHSQAVGAPKIPSVSWHDVGGLQDVKKEILETIQLPLEHPELLS-LGLRR-S 736
Query: 583 GVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPA 642
G+LL+GPPGTGKTLLAKAVATE F++++GPE+++ +VG+SE+ +RE+F +AR A+P
Sbjct: 737 GLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPC 796
Query: 643 IIFIDEIDAIAPARG-TAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPAL 701
IIF DE+D++AP+RG + + V DR+++QLL E+DGL V VI ATNRPD+LDPAL
Sbjct: 797 IIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPAL 856
Query: 702 LRPGRFDRLILVPAPDEKA-RFEIFKVHTRGMPLADDVDLKE-LARRTEGYTGADIAAVC 759
LRPGRFD+L+ V A +++A + + TR L V L L TGAD+ ++C
Sbjct: 857 LRPGRFDKLVFVGASEDRASQLRVLSAITRKFKLEASVSLMNVLDCCPPQLTGADLYSLC 916
Query: 760 REAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQF 819
+A M AL+R V +LEE E +L++T +D A +++PSV++ + Y++
Sbjct: 917 SDAMMTALKRRV-----RDLEEGLEPRSSALLLTMEDLLQAAARLQPSVSEQELLRYKRI 971
Query: 820 E 820
+
Sbjct: 972 Q 972
Score = 190 bits (478), Expect = 5e-47
Identities = 102/198 (51%), Positives = 135/198 (67%), Gaps = 5/198 (2%)
Query: 205 KIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAK 264
KIP V++ D+GGL++ ++I E ++LPL+HPEL LG+ G+LL+GPPGTGKTLLAK
Sbjct: 696 KIPSVSWHDVGGLQDVKKEILETIQLPLEHPELLS-LGLRR-SGLLLHGPPGTGKTLLAK 753
Query: 265 AVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEV 324
AVA E + F+++ GPE+++ Y G+SEE +RE+F A AP IIF DE+D++AP R
Sbjct: 754 AVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRS 813
Query: 325 --VGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGV-PD 381
G V RVVSQLL +DGL S V VI ATNRPD LDPAL RPGRFD+ + VG D
Sbjct: 814 GDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASED 873
Query: 382 KQGRKEILQIHTRGMPIE 399
+ + +L TR +E
Sbjct: 874 RASQLRVLSAITRKFKLE 891
Score = 79.2 bits (192), Expect = 2e-13
Identities = 66/262 (25%), Positives = 114/262 (43%), Gaps = 8/262 (3%)
Query: 546 WDDIG--GLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
WD + GLE + EL ++ L+ +T VLL GPPG+GKT A +
Sbjct: 430 WDSLSPPGLEALVNELCAVLKPHLQPGGTL----LTGTSCVLLQGPPGSGKTTAVTAACS 485
Query: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEK 663
+ + + + + E +++ F +AR+ P ++ + +D + R +
Sbjct: 486 RLGLHLLKVPCSSLCADSSRTVETKLQTTFSRARRCRPVVLLLTALDLLGRDRDGLGEDA 545
Query: 664 VTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFE 723
+ LL + D L ++V+A T+R L P +R F + VP E R
Sbjct: 546 CVVATLRHLLLDEDPLSRCPPLMVVATTSRVQDL-PTDVRTA-FPHELEVPVLSESQRLS 603
Query: 724 IFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEES 783
+ + T +PL +V+L +LARR G+ D+ A+ A+ A R A E+E
Sbjct: 604 VLQALTAHLPLGQEVNLSQLARRCAGFVVGDLYALLTHASRAACTRIKAAGLAMSEEDEG 663
Query: 784 EKFLKSLIVTRKDFEVALKKVK 805
E + +DF AL +++
Sbjct: 664 ELCAAGFPLLAEDFGQALDQLQ 685
>gb|AAG19042.1| (AE005003) ATP-dependent 26S proteinase regulatory subunit 4
homolog; PrrIV2 [Halobacterium sp. NRC-1]
Length = 368
Score = 248 bits (626), Expect = 2e-64
Identities = 140/306 (45%), Positives = 199/306 (64%), Gaps = 17/306 (5%)
Query: 494 LIKEGKINPEAETIPREVLEELKVT-----KADFYEALKMV----EPSALREVLIEV--- 541
+IK+ N EA T EV +EL+ T + +L +V + + +R ++EV
Sbjct: 48 VIKQHGNNQEALT---EVTDELRATLEPGSRVAVNNSLSVVRQLDDEADVRARVMEVDDS 104
Query: 542 PNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAV 601
P+V ++DIGGL+D +E+RE VE P+K P F+ +GI PP GVLL+GPPGTGKTL+AKAV
Sbjct: 105 PDVGYEDIGGLDDQLREVRETVELPMKDPGLFETVGINPPSGVLLHGPPGTGKTLMAKAV 164
Query: 602 ATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR--GTA 659
A+++ A+FI + G E++ K++GE K +R++F+ AR PA++FIDEIDAIA R
Sbjct: 165 ASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARDHEPAVVFIDEIDAIASKRTDSKT 224
Query: 660 EGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEK 719
G+ R + QLL+EMDG E + +IAATNR D+LD A+LRPGRFDRLI VP P+
Sbjct: 225 SGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPHPNVG 284
Query: 720 ARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEEL 779
R +IF++HTR M +AD VD ELA T +GAD+ A+C EA M A+R ++ ++
Sbjct: 285 GREKIFRIHTRAMNVADSVDFGELAADTGDLSGADVKAICTEAGMFAIRDDRTEVRMQDF 344
Query: 780 EEESEK 785
+ EK
Sbjct: 345 QSAREK 350
Score = 212 bits (535), Expect = 1e-53
Identities = 110/211 (52%), Positives = 152/211 (71%), Gaps = 5/211 (2%)
Query: 191 EVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVL 250
E +V + +EV + P+V YEDIGGL + + ++RE VELP+K P LFE +GI PP GVL
Sbjct: 91 EADVRARVMEVDDS--PDVGYEDIGGLDDQLREVRETVELPMKDPGLFETVGINPPSGVL 148
Query: 251 LYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIF 310
L+GPPGTGKTL+AKAVA++ +A FI + G E++ K+ GE + +R++F+ A ++ PA++F
Sbjct: 149 LHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARDHEPAVVF 208
Query: 311 IDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRR 367
IDEIDAIA KR + G+ E +R + QLL+ MDG RG + +IAATNR D LD A+ R
Sbjct: 209 IDEIDAIASKRTDSKTSGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDRAILR 268
Query: 368 PGRFDREIEVGVPDKQGRKEILQIHTRGMPI 398
PGRFDR IEV P+ GR++I +IHTR M +
Sbjct: 269 PGRFDRLIEVPHPNVGGREKIFRIHTRAMNV 299
>gi|6324000 Member of the AAA-protein family that includes NSFp and PEX1p; Pex6p
[Saccharomyces cerevisiae]
>gi|464348|sp|P33760|PEX6_YEAST PEROXISOME BIOSYNTHESIS
PROTEIN PAS8 (PEROXIN-6) >gi|539317|pir||S43211 probable
ATP-binding protein PAS8 - yeast (Saccharomyces
cerevisiae) >gi|393287|gb|AAA16574.1| (L20789) PAS8
[Saccharomyces cerevisiae] >gi|633657|emb|CAA86369.1|
(Z46259) PAS8 gene [Saccharomyces cerevisiae]
>gi|1302449|emb|CAA96261.1| (Z71605) ORF YNL329c
[Saccharomyces cerevisiae]
Length = 1030
Score = 247 bits (625), Expect = 3e-64
Identities = 144/392 (36%), Positives = 229/392 (57%), Gaps = 32/392 (8%)
Query: 448 DRNLYIEVRTKLIDKL-LDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAET 506
+R++ +V +D + L+ + G D+ ++ A M R +E K +
Sbjct: 638 NRDVQQKVPVSYMDNISFSSLSSYSAGLTPLDIKSIVETARMTATARFYQESK---KCGW 694
Query: 507 IPREVLEELKVTKADFYEALKMVEPSALREV-LIEVPNVHWDDIGGLEDVKQELREAVEW 565
+P+ +L +T+ D +A + ++PNV WDDIGG++ VK E+ + ++
Sbjct: 695 LPQSIL----ITQEDLSKATSKARNEFSVSIGAPQIPNVTWDDIGGIDFVKGEILDTIDM 750
Query: 566 PLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGES 625
PLK+P+ F G+ G+L YGPPGTGKTL+AKA+AT NF +++GPE+L+ ++GES
Sbjct: 751 PLKHPELFTS-GMKKRSGILFYGPPGTGKTLMAKAIATNFSLNFFSVKGPELLNMYIGES 809
Query: 626 EKRIREIFRKARQASPAIIFIDEIDAIAPARGT-AEGEKVTDRIINQLLTEMDGL-VENS 683
E +R +F+KAR+A P +IF DEID++AP RG + V DRI++QLL E+DG+ +
Sbjct: 810 EANVRRVFQKAREAKPCVIFFDEIDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSTDAD 869
Query: 684 GVVVIAATNRPDILDPALLRPGRFDRLILVPAPD-EKARFEIFKVHTRGMPLADDVDLKE 742
GV VI ATNRPD+LD ALLRPGRFD+L+ + PD + + I + TR L +DV L E
Sbjct: 870 GVFVIGATNRPDLLDEALLRPGRFDKLLYLGIPDTDTKQLNILEALTRKFVLDNDVKLIE 929
Query: 743 LARRTE-GYTGADIAAVCREAAMNALRRAVAKLSPEELEEESE----------------- 784
LA+ YTGAD A+C +A +NA+ R +A++ +++ + +E
Sbjct: 930 LAKLCPFNYTGADFYALCSDAMLNAMSR-IARMVEKKVSQHNELTGENISTRRWFDKIAT 988
Query: 785 KFLKSLIVTRKDFEVALKKVKPSVTKYMMEYY 816
K ++V +DF A +++ PSV++ + +Y
Sbjct: 989 KEDTKVVVKMEDFLKAQEQLTPSVSRAELNHY 1020
Score = 185 bits (466), Expect = 1e-45
Identities = 96/208 (46%), Positives = 139/208 (66%), Gaps = 5/208 (2%)
Query: 198 AVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGT 257
+V + +IP VT++DIGG+ +I + +++PLKHPELF G++ G+L YGPPGT
Sbjct: 718 SVSIGAPQIPNVTWDDIGGIDFVKGEILDTIDMPLKHPELFTS-GMKKRSGILFYGPPGT 776
Query: 258 GKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAI 317
GKTL+AKA+A + F ++ GPE+++ Y GESE +R +F++A E P +IF DEID++
Sbjct: 777 GKTLMAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKAREAKPCVIFFDEIDSV 836
Query: 318 APKR--EEVVGEVEKRVVSQLLTLMDGLKSRGK-VIVIAATNRPDALDPALRRPGRFDRE 374
APKR + G V R+VSQLL +DG+ + V VI ATNRPD LD AL RPGRFD+
Sbjct: 837 APKRGNQGDSGGVMDRIVSQLLAELDGMSTDADGVFVIGATNRPDLLDEALLRPGRFDKL 896
Query: 375 IEVGVPDKQGRK-EILQIHTRGMPIEPD 401
+ +G+PD ++ IL+ TR ++ D
Sbjct: 897 LYLGIPDTDTKQLNILEALTRKFVLDND 924
>emb|CAA58229.1| (X83226) peroxisome biogenesis invlved proteind [Saccharomyces
cerevisiae]
Length = 889
Score = 247 bits (625), Expect = 3e-64
Identities = 144/392 (36%), Positives = 229/392 (57%), Gaps = 32/392 (8%)
Query: 448 DRNLYIEVRTKLIDKL-LDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAET 506
+R++ +V +D + L+ + G D+ ++ A M R +E K +
Sbjct: 497 NRDVQQKVPVSYMDNISFSSLSSYSAGLTPLDIKSIVETARMTATARFYQESK---KCGW 553
Query: 507 IPREVLEELKVTKADFYEALKMVEPSALREV-LIEVPNVHWDDIGGLEDVKQELREAVEW 565
+P+ +L +T+ D +A + ++PNV WDDIGG++ VK E+ + ++
Sbjct: 554 LPQSIL----ITQEDLSKATSKARNEFSVSIGAPQIPNVTWDDIGGIDFVKGEILDTIDM 609
Query: 566 PLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGES 625
PLK+P+ F G+ G+L YGPPGTGKTL+AKA+AT NF +++GPE+L+ ++GES
Sbjct: 610 PLKHPELFTS-GMKKRSGILFYGPPGTGKTLMAKAIATNFSLNFFSVKGPELLNMYIGES 668
Query: 626 EKRIREIFRKARQASPAIIFIDEIDAIAPARGT-AEGEKVTDRIINQLLTEMDGL-VENS 683
E +R +F+KAR+A P +IF DEID++AP RG + V DRI++QLL E+DG+ +
Sbjct: 669 EANVRRVFQKAREAKPCVIFFDEIDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSTDAD 728
Query: 684 GVVVIAATNRPDILDPALLRPGRFDRLILVPAPD-EKARFEIFKVHTRGMPLADDVDLKE 742
GV VI ATNRPD+LD ALLRPGRFD+L+ + PD + + I + TR L +DV L E
Sbjct: 729 GVFVIGATNRPDLLDEALLRPGRFDKLLYLGIPDTDTKQLNILEALTRKFVLDNDVKLIE 788
Query: 743 LARRTE-GYTGADIAAVCREAAMNALRRAVAKLSPEELEEESE----------------- 784
LA+ YTGAD A+C +A +NA+ R +A++ +++ + +E
Sbjct: 789 LAKLCPFNYTGADFYALCSDAMLNAMSR-IARMVEKKVSQHNELTGENISTRRWFDKIAT 847
Query: 785 KFLKSLIVTRKDFEVALKKVKPSVTKYMMEYY 816
K ++V +DF A +++ PSV++ + +Y
Sbjct: 848 KEDTKVVVKMEDFLKAQEQLTPSVSRAELNHY 879
Score = 185 bits (466), Expect = 1e-45
Identities = 96/208 (46%), Positives = 139/208 (66%), Gaps = 5/208 (2%)
Query: 198 AVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGT 257
+V + +IP VT++DIGG+ +I + +++PLKHPELF G++ G+L YGPPGT
Sbjct: 577 SVSIGAPQIPNVTWDDIGGIDFVKGEILDTIDMPLKHPELFTS-GMKKRSGILFYGPPGT 635
Query: 258 GKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAI 317
GKTL+AKA+A + F ++ GPE+++ Y GESE +R +F++A E P +IF DEID++
Sbjct: 636 GKTLMAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKAREAKPCVIFFDEIDSV 695
Query: 318 APKR--EEVVGEVEKRVVSQLLTLMDGLKSRGK-VIVIAATNRPDALDPALRRPGRFDRE 374
APKR + G V R+VSQLL +DG+ + V VI ATNRPD LD AL RPGRFD+
Sbjct: 696 APKRGNQGDSGGVMDRIVSQLLAELDGMSTDADGVFVIGATNRPDLLDEALLRPGRFDKL 755
Query: 375 IEVGVPDKQGRK-EILQIHTRGMPIEPD 401
+ +G+PD ++ IL+ TR ++ D
Sbjct: 756 LYLGIPDTDTKQLNILEALTRKFVLDND 783
>gb|AAD52812.1|AF129874_1 (AF129874) peroxin-6 [Pichia angusta]
Length = 1135
Score = 247 bits (623), Expect = 5e-64
Identities = 184/603 (30%), Positives = 295/603 (48%), Gaps = 105/603 (17%)
Query: 258 GKTLLAKAVANEANAYFIAINGPEIM-----SKYYGESEERLREIFKEAEENAPAIIFID 312
GK L + +A E A + ++ +++ SK G + + + I++I
Sbjct: 576 GKATLVRRIATEFGANLLELDAYDLLNQASVSKTIGTIRGKSDRV---VDSCCSVILYIR 632
Query: 313 EIDAIAPKREEVVGEVEKRVVS-QLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRF 371
I+A+A K + + +K +S +L L+D S+G I I +TN DA+ +R +F
Sbjct: 633 HIEALAKKPDP--NQQQKDSMSLRLAELIDEYTSKG-AIFIGSTNDADAISELIRSKFKF 689
Query: 372 DREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEK 431
D I + VP + RK IL +
Sbjct: 690 D--ISINVPTEPERKLILT---------------------------------------DL 708
Query: 432 VSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVV- 490
+ K++++ +LR D +L D LA + G DL ++ +
Sbjct: 709 LDDMKTKDKTPVVLRPDVSL-------------DTLALQSAGLTANDLVSIVDNTITIAI 755
Query: 491 --LRRLIKEGKINPEAETIPREVLE----ELKVTKADFYEALKMVEPSALREV-LIEVPN 543
L RL +E K+N + ++L +K+T DF ++ + +P+
Sbjct: 756 ERLERLSEEQKVNWD------QLLSFNGGRIKLTPEDFETSINDARNKFSDMIGAPRIPD 809
Query: 544 VHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
V W+D+GGL+ VK E+ + +E PLK+P+ F + G+ G+L YGPPGTGKTLLAKA+AT
Sbjct: 810 VKWEDVGGLDVVKDEILDTIEMPLKHPELFSK-GMKKRSGILFYGPPGTGKTLLAKAIAT 868
Query: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGT-AEGE 662
NF +++GPE+L+ ++GESE +R +F+KAR A P +IF DE+D++AP RG +
Sbjct: 869 NFALNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSG 928
Query: 663 KVTDRIINQLLTEMDGL---VENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD-E 718
V DRI++QLL E+DG+ GV V+ ATNRPD+LD ALLRPGRFD+++ + D
Sbjct: 929 GVMDRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIADTH 988
Query: 719 KARFEIFKVHTRGMPLADDVDLKELARRTE-GYTGADIAAVCREAAMNALRRAVAKLSPE 777
+ + +I + TR L VDL +A YTGAD A+C +A +NA+ R + +
Sbjct: 989 EKQAKIIQALTRKFQLDPSVDLGRIAETCPFTYTGADFYALCSDAMLNAMTRTAGAVEKK 1048
Query: 778 ELE-----EESEKFL-------------KSLIVTRKDFEVALKKVKPSVTKYMMEYYRQF 819
E EE +K ++V +DF A ++ PSV+ +++Y
Sbjct: 1049 INEYNCNREEGDKISTRFWFDNIAKPEDTQVLVKSEDFAKARDELVPSVSAEELQHYLSV 1108
Query: 820 EES 822
E+
Sbjct: 1109 REN 1111
Score = 185 bits (464), Expect = 2e-45
Identities = 93/205 (45%), Positives = 138/205 (66%), Gaps = 7/205 (3%)
Query: 205 KIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAK 264
+IP+V +ED+GGL ++I + +E+PLKHPELF + G++ G+L YGPPGTGKTLLAK
Sbjct: 806 RIPDVKWEDVGGLDVVKDEILDTIEMPLKHPELFSK-GMKKRSGILFYGPPGTGKTLLAK 864
Query: 265 AVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--E 322
A+A F ++ GPE+++ Y GESE +R +F++A + P +IF DE+D++APKR +
Sbjct: 865 AIATNFALNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQ 924
Query: 323 EVVGEVEKRVVSQLLTLMDGL---KSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGV 379
G V R+VSQLL +DG+ + V V+ ATNRPD LD AL RPGRFD+ + +G+
Sbjct: 925 GDSGGVMDRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGI 984
Query: 380 PDKQGRK-EILQIHTRGMPIEPDFE 403
D ++ +I+Q TR ++P +
Sbjct: 985 ADTHEKQAKIIQALTRKFQLDPSVD 1009
>dbj|BAA96090.1| (AB032368) FtsH [Thermus thermophilus]
Length = 624
Score = 247 bits (623), Expect = 5e-64
Identities = 129/267 (48%), Positives = 180/267 (67%), Gaps = 8/267 (2%)
Query: 537 VLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTL 596
VL E P V + D+ G E+ K+EL+E VE+ LK P F +G PKGVLL GPPG GKT
Sbjct: 146 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 204
Query: 597 LAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR 656
LA+AVA E++ FI G + + +VG R+R++F A++ +P I+FIDEIDA+ R
Sbjct: 205 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 264
Query: 657 GTAEGEKVTDR--IINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVP 714
G+ G +R +NQLL EMDG +++ +VV+AATNRPDILDPALLRPGRFDR I +
Sbjct: 265 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 324
Query: 715 APDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKL 774
APD K R +I ++H RG PLA+DVDL LA+RT G+ GAD+ + EAA+ A R K+
Sbjct: 325 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKI 384
Query: 775 SPEELEEESEKFL-----KSLIVTRKD 796
+ ++LEE +++ + KSL+++ +D
Sbjct: 385 TMKDLEEAADRVMMGPAKKSLVLSPRD 411
Score = 197 bits (495), Expect = 5e-49
Identities = 98/206 (47%), Positives = 140/206 (67%), Gaps = 4/206 (1%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAV 266
P+VT++D+ G +EA E+++E+VE LK+P F +G PKGVLL GPPG GKT LA+AV
Sbjct: 151 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 209
Query: 267 ANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVG 326
A EA FI +G + + + G R+R++F+ A+ +AP I+FIDEIDA+ KR VG
Sbjct: 210 AGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG 269
Query: 327 ---EVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQ 383
+ ++ ++QLL MDG + ++V+AATNRPD LDPAL RPGRFDR+I + PD +
Sbjct: 270 GGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 329
Query: 384 GRKEILQIHTRGMPIEPDFEKETVIK 409
GR++IL+IH RG P+ D + + K
Sbjct: 330 GREQILRIHARGKPLAEDVDLALLAK 355
>sp|Q13608|PEX6_HUMAN PEROXISOME ASSEMBLY FACTOR-2 (PAF-2) (PEROXISOMAL-TYPE ATPASE 1)
(PEROXIN-6) >gi|2135899|pir||S71090 peroxisome
biogenesis disorder group 4 protein PXAAA1 - human
>gi|1354753|gb|AAC50655.1| (U56602) Pxaaa1p [Homo
sapiens]
Length = 980
Score = 244 bits (616), Expect = 3e-63
Identities = 143/362 (39%), Positives = 222/362 (60%), Gaps = 12/362 (3%)
Query: 464 LDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEE-LKVTKADF 522
L +LA GFV DL AL ++ R+ G E E+ + DF
Sbjct: 620 LAQLARRCAGFVVGDLYALLTHSSRAACTRIKNSGLAGGLTEEDEGELCAAGFPLLAEDF 679
Query: 523 YEALKMVEPSALREV-LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPP 581
+AL+ ++ + + V ++P+V W D+GGL++VK+E+ E ++ PL++P+ LG+
Sbjct: 680 GQALEQLQTAHSQAVGAPKIPSVSWHDVGGLQEVKKEILETIQLPLEHPELLS-LGLRR- 737
Query: 582 KGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASP 641
G+LL+GPPGTGKTLLAKAVATE F++++GPE+++ +VG+SE+ +RE+F +AR A+P
Sbjct: 738 SGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAP 797
Query: 642 AIIFIDEIDAIAPARG-TAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPA 700
IIF DE+D++AP+RG + + V DR+++QLL E+DGL V VI ATNRPD+LDPA
Sbjct: 798 CIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPA 857
Query: 701 LLRPGRFDRLILVPAPDEKA-RFEIFKVHTRGMPLADDVDL-KELARRTEGYTGADIAAV 758
LLRPGRFD+L+ V A +++A + + TR L V L L TGAD+ ++
Sbjct: 858 LLRPGRFDKLVFVGANEDRASQLRVLSAITRKFKLEPSVSLVNVLDCCPPQLTGADLYSL 917
Query: 759 CREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQ 818
C +A AL+R V +LEE E +L++T +D A +++PSV++ + Y++
Sbjct: 918 CSDAMTAALKRRV-----HDLEEGLEPGSSALMLTMEDLLQAAARLQPSVSEQELLRYKR 972
Query: 819 FE 820
+
Sbjct: 973 IQ 974
Score = 194 bits (489), Expect = 3e-48
Identities = 105/207 (50%), Positives = 138/207 (65%), Gaps = 5/207 (2%)
Query: 205 KIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAK 264
KIP V++ D+GGL+E ++I E ++LPL+HPEL LG+ G+LL+GPPGTGKTLLAK
Sbjct: 698 KIPSVSWHDVGGLQEVKKEILETIQLPLEHPELLS-LGLRR-SGLLLHGPPGTGKTLLAK 755
Query: 265 AVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEV 324
AVA E + F+++ GPE+++ Y G+SEE +RE+F A AP IIF DE+D++AP R
Sbjct: 756 AVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRS 815
Query: 325 --VGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGV-PD 381
G V RVVSQLL +DGL S V VI ATNRPD LDPAL RPGRFD+ + VG D
Sbjct: 816 GDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGANED 875
Query: 382 KQGRKEILQIHTRGMPIEPDFEKETVI 408
+ + +L TR +EP V+
Sbjct: 876 RASQLRVLSAITRKFKLEPSVSLVNVL 902
Score = 83.9 bits (204), Expect = 7e-15
Identities = 66/231 (28%), Positives = 111/231 (47%), Gaps = 6/231 (2%)
Query: 578 ITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKAR 637
+T VLL GPPG GKT + A + + + + + ++ G E +++ IF +AR
Sbjct: 460 LTGTSSVLLRGPPGCGKTTVVAAACSHLGLHLLKVPCSSLCAESSGAVETKLQAIFSRAR 519
Query: 638 QASPAIIFIDEIDAIAPAR-GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDI 696
+ PA++ + +D + R G E +V ++ LL D L ++V+A T+R
Sbjct: 520 RCRPAVLLLTAVDLLGRDRDGLGEDARVM-AVLRHLLLNEDPLNSCPPLMVVATTSRAQD 578
Query: 697 LDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIA 756
L PA ++ F + VPA E R I + T +PL +V+L +LARR G+ D+
Sbjct: 579 L-PADVQTA-FPHELEVPALSEGQRLSILRALTAHLPLGQEVNLAQLARRCAGFVVGDLY 636
Query: 757 AVCREAAMNALRRAVAKLSPEELEEESEKFL--KSLIVTRKDFEVALKKVK 805
A+ ++ A R L EE E L + +DF AL++++
Sbjct: 637 ALLTHSSRAACTRIKNSGLAGGLTEEDEGELCAAGFPLLAEDFGQALEQLQ 687
>gi|4505729 peroxisomal biogenesis factor 6; Peroxisomal biogenesis factor 6
(peroxisomal AAA-type ATPase 1); peroxisome biogenesis
factor 6 [Homo sapiens] >gi|1747316|dbj|BAA12069.1|
(D83703) peroxisome assembly factor-2 [Homo sapiens]
>gi|7453117|gb|AAF62564.1| (AF108098) peroxisome
assembly factor-2 [Homo sapiens]
Length = 980
Score = 244 bits (616), Expect = 3e-63
Identities = 143/362 (39%), Positives = 222/362 (60%), Gaps = 12/362 (3%)
Query: 464 LDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEE-LKVTKADF 522
L +LA GFV DL AL ++ R+ G E E+ + DF
Sbjct: 620 LAQLARRCAGFVVGDLYALLTHSSRAACTRIKNSGLAGGLTEEDEGELCAAGFPLLAEDF 679
Query: 523 YEALKMVEPSALREV-LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPP 581
+AL+ ++ + + V ++P+V W D+GGL++VK+E+ E ++ PL++P+ LG+
Sbjct: 680 GQALEQLQTAHSQAVGAPKIPSVSWHDVGGLQEVKKEILETIQLPLEHPELLS-LGLRR- 737
Query: 582 KGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASP 641
G+LL+GPPGTGKTLLAKAVATE F++++GPE+++ +VG+SE+ +RE+F +AR A+P
Sbjct: 738 SGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAP 797
Query: 642 AIIFIDEIDAIAPARG-TAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPA 700
IIF DE+D++AP+RG + + V DR+++QLL E+DGL V VI ATNRPD+LDPA
Sbjct: 798 CIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPA 857
Query: 701 LLRPGRFDRLILVPAPDEKA-RFEIFKVHTRGMPLADDVDL-KELARRTEGYTGADIAAV 758
LLRPGRFD+L+ V A +++A + + TR L V L L TGAD+ ++
Sbjct: 858 LLRPGRFDKLVFVGANEDRASQLRVLSAITRKFKLEPSVSLVNVLDCCPPQLTGADLYSL 917
Query: 759 CREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQ 818
C +A AL+R V +LEE E +L++T +D A +++PSV++ + Y++
Sbjct: 918 CSDAMTAALKRRV-----HDLEEGLEPGSSALMLTMEDLLQAAARLQPSVSEQELLRYKR 972
Query: 819 FE 820
+
Sbjct: 973 IQ 974
Score = 194 bits (489), Expect = 3e-48
Identities = 105/207 (50%), Positives = 138/207 (65%), Gaps = 5/207 (2%)
Query: 205 KIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAK 264
KIP V++ D+GGL+E ++I E ++LPL+HPEL LG+ G+LL+GPPGTGKTLLAK
Sbjct: 698 KIPSVSWHDVGGLQEVKKEILETIQLPLEHPELLS-LGLRR-SGLLLHGPPGTGKTLLAK 755
Query: 265 AVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEV 324
AVA E + F+++ GPE+++ Y G+SEE +RE+F A AP IIF DE+D++AP R
Sbjct: 756 AVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRS 815
Query: 325 --VGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGV-PD 381
G V RVVSQLL +DGL S V VI ATNRPD LDPAL RPGRFD+ + VG D
Sbjct: 816 GDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGANED 875
Query: 382 KQGRKEILQIHTRGMPIEPDFEKETVI 408
+ + +L TR +EP V+
Sbjct: 876 RASQLRVLSAITRKFKLEPSVSLVNVL 902
Score = 83.9 bits (204), Expect = 7e-15
Identities = 66/231 (28%), Positives = 111/231 (47%), Gaps = 6/231 (2%)
Query: 578 ITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKAR 637
+T VLL GPPG GKT + A + + + + + ++ G E +++ IF +AR
Sbjct: 460 LTGTSSVLLRGPPGCGKTTVVAAACSHLGLHLLKVPCSSLCAESSGAVETKLQAIFSRAR 519
Query: 638 QASPAIIFIDEIDAIAPAR-GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDI 696
+ PA++ + +D + R G E +V ++ LL D L ++V+A T+R
Sbjct: 520 RCRPAVLLLTAVDLLGRDRDGLGEDARVM-AVLRHLLLNEDPLNSCPPLMVVATTSRAQD 578
Query: 697 LDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIA 756
L PA ++ F + VPA E R I + T +PL +V+L +LARR G+ D+
Sbjct: 579 L-PADVQTA-FPHELEVPALSEGQRLSILRALTAHLPLGQEVNLAQLARRCAGFVVGDLY 636
Query: 757 AVCREAAMNALRRAVAKLSPEELEEESEKFL--KSLIVTRKDFEVALKKVK 805
A+ ++ A R L EE E L + +DF AL++++
Sbjct: 637 ALLTHSSRAACTRIKNSGLAGGLTEEDEGELCAAGFPLLAEDFGQALEQLQ 687
>gi|11417640 peroxisomal biogenesis factor 6 [Homo sapiens]
Length = 600
Score = 244 bits (616), Expect = 3e-63
Identities = 143/362 (39%), Positives = 222/362 (60%), Gaps = 12/362 (3%)
Query: 464 LDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEE-LKVTKADF 522
L +LA GFV DL AL ++ R+ G E E+ + DF
Sbjct: 240 LAQLARRCAGFVVGDLYALLTHSSRAACTRIKNSGLAGGLTEEDEGELCAAGFPLLAEDF 299
Query: 523 YEALKMVEPSALREV-LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPP 581
+AL+ ++ + + V ++P+V W D+GGL++VK+E+ E ++ PL++P+ LG+
Sbjct: 300 GQALEQLQTAHSQAVGAPKIPSVSWHDVGGLQEVKKEILETIQLPLEHPELLS-LGLRR- 357
Query: 582 KGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASP 641
G+LL+GPPGTGKTLLAKAVATE F++++GPE+++ +VG+SE+ +RE+F +AR A+P
Sbjct: 358 SGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAP 417
Query: 642 AIIFIDEIDAIAPARG-TAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPA 700
IIF DE+D++AP+RG + + V DR+++QLL E+DGL V VI ATNRPD+LDPA
Sbjct: 418 CIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPA 477
Query: 701 LLRPGRFDRLILVPAPDEKA-RFEIFKVHTRGMPLADDVDL-KELARRTEGYTGADIAAV 758
LLRPGRFD+L+ V A +++A + + TR L V L L TGAD+ ++
Sbjct: 478 LLRPGRFDKLVFVGANEDRASQLRVLSAITRKFKLEPSVSLVNVLDCCPPQLTGADLYSL 537
Query: 759 CREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQ 818
C +A AL+R V +LEE E +L++T +D A +++PSV++ + Y++
Sbjct: 538 CSDAMTAALKRRV-----HDLEEGLEPGSSALMLTMEDLLQAAARLQPSVSEQELLRYKR 592
Query: 819 FE 820
+
Sbjct: 593 IQ 594
Score = 194 bits (489), Expect = 3e-48
Identities = 105/207 (50%), Positives = 138/207 (65%), Gaps = 5/207 (2%)
Query: 205 KIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAK 264
KIP V++ D+GGL+E ++I E ++LPL+HPEL LG+ G+LL+GPPGTGKTLLAK
Sbjct: 318 KIPSVSWHDVGGLQEVKKEILETIQLPLEHPELLS-LGLRR-SGLLLHGPPGTGKTLLAK 375
Query: 265 AVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEV 324
AVA E + F+++ GPE+++ Y G+SEE +RE+F A AP IIF DE+D++AP R
Sbjct: 376 AVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRS 435
Query: 325 --VGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGV-PD 381
G V RVVSQLL +DGL S V VI ATNRPD LDPAL RPGRFD+ + VG D
Sbjct: 436 GDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGANED 495
Query: 382 KQGRKEILQIHTRGMPIEPDFEKETVI 408
+ + +L TR +EP V+
Sbjct: 496 RASQLRVLSAITRKFKLEPSVSLVNVL 522
Score = 83.9 bits (204), Expect = 7e-15
Identities = 66/231 (28%), Positives = 111/231 (47%), Gaps = 6/231 (2%)
Query: 578 ITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKAR 637
+T VLL GPPG GKT + A + + + + + ++ G E +++ IF +AR
Sbjct: 80 LTGTSSVLLRGPPGCGKTTVVAAACSHLGLHLLKVPCSSLCAESSGAVETKLQAIFSRAR 139
Query: 638 QASPAIIFIDEIDAIAPAR-GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDI 696
+ PA++ + +D + R G E +V ++ LL D L ++V+A T+R
Sbjct: 140 RCRPAVLLLTAVDLLGRDRDGLGEDARVM-AVLRHLLLNEDPLNSCPPLMVVATTSRAQD 198
Query: 697 LDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIA 756
L PA ++ F + VPA E R I + T +PL +V+L +LARR G+ D+
Sbjct: 199 L-PADVQTA-FPHELEVPALSEGQRLSILRALTAHLPLGQEVNLAQLARRCAGFVVGDLY 256
Query: 757 AVCREAAMNALRRAVAKLSPEELEEESEKFL--KSLIVTRKDFEVALKKVK 805
A+ ++ A R L EE E L + +DF AL++++
Sbjct: 257 ALLTHSSRAACTRIKNSGLAGGLTEEDEGELCAAGFPLLAEDFGQALEQLQ 307
>gb|AAF49760.1| (AE003536) l(3)70Da gene product [Drosophila melanogaster]
Length = 1006
Score = 243 bits (613), Expect = 7e-63
Identities = 173/579 (29%), Positives = 275/579 (46%), Gaps = 81/579 (13%)
Query: 249 VLLYGPPGTGKTLLAKAVANEAN-----AYFIAINGPEIMSKYYGESEERLREIFKEAEE 303
VLL G GTGKT+L + + ++ + +F +G + ++ LR IF +
Sbjct: 480 VLLAGASGTGKTVLVERILDQLSRKPDYCHFEFFHGSRSKGRKTESIQKDLRNIFTSCLQ 539
Query: 304 NAPAIIFIDEIDAIAPKREEVV---GEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDA 360
+APAI+ ++ +D +A E GE R+ + L+ + + VIA N
Sbjct: 540 HAPAIVVLENLDVLAHAAGEQSSQDGEYYNRMADTVYQLIVQYTTNNAIAVIATVNELQT 599
Query: 361 LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRF 420
L+ L P +GR V + + L +R
Sbjct: 600 LNKRLSSP--------------RGRH--------------------VFQTVARLPNLERA 625
Query: 421 DKEKI-KKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADL 479
D+E I +++ ++ AK + +K + +T G+ DL
Sbjct: 626 DREIILRELCSHINVAKDLDLVK------------------------FSNLTEGYRKCDL 661
Query: 480 AALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLI 539
A R + + + +++E L+ T + L+ ++ +
Sbjct: 662 VQFVERAIFYAYRISKTQPLLTND------QLIESLEHTNS---YCLQGIQSNQRTGNDA 712
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
+ + +++ GLE V L E + WP +YP F + GVLLYGPPGTGKT L
Sbjct: 713 DANEMRVEELPGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYLVS 772
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA 659
+AT I+++GPE+L+K++G+SE+ +R +F +AR A P ++F DE D++AP RG
Sbjct: 773 QLATSWNLRIISVKGPELLAKYIGQSEENVRNLFNRARSARPCVLFFDEFDSLAPKRG-H 831
Query: 660 EGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEK 719
+ VTDR++NQLLTE+DG+ GV VIAAT+RP++LDPALLR GR DRL+ P PD
Sbjct: 832 DSTGVTDRVVNQLLTELDGVEGLQGVTVIAATSRPELLDPALLRSGRIDRLVECPLPDAP 891
Query: 720 ARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEEL 779
AR IF+ + + L + VD A +T YTGADI ++ A M A++ A+A+ E+L
Sbjct: 892 ARVRIFEALSSTLSLDECVDFDWFAGKTANYTGADIQSILTSANMAAVKEALAQFGHEKL 951
Query: 780 EEESEKFLKSLIVTRKDFEVALKKVKPS-VTKYMMEYYR 817
++ K LI + F+ + S V KY Y R
Sbjct: 952 AKKISLKQKHLI---ESFQTTRPSLSASDVAKYHRTYAR 987
Score = 159 bits (399), Expect = 9e-38
Identities = 79/183 (43%), Positives = 113/183 (61%)
Query: 208 EVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVA 267
E+ E++ GL+ + + E++ P ++P +F + GVLLYGPPGTGKT L +A
Sbjct: 716 EMRVEELPGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYLVSQLA 775
Query: 268 NEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGE 327
N I++ GPE+++KY G+SEE +R +F A P ++F DE D++APKR
Sbjct: 776 TSWNLRIISVKGPELLAKYIGQSEENVRNLFNRARSARPCVLFFDEFDSLAPKRGHDSTG 835
Query: 328 VEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKE 387
V RVV+QLLT +DG++ V VIAAT+RP+ LDPAL R GR DR +E +PD R
Sbjct: 836 VTDRVVNQLLTELDGVEGLQGVTVIAATSRPELLDPALLRSGRIDRLVECPLPDAPARVR 895
Query: 388 ILQ 390
I +
Sbjct: 896 IFE 898
>emb|CAB51031.1| (AJ243811) l(3)70Da [Drosophila melanogaster]
Length = 1006
Score = 243 bits (613), Expect = 7e-63
Identities = 173/579 (29%), Positives = 275/579 (46%), Gaps = 81/579 (13%)
Query: 249 VLLYGPPGTGKTLLAKAVANEAN-----AYFIAINGPEIMSKYYGESEERLREIFKEAEE 303
VLL G GTGKT+L + + ++ + +F +G + ++ LR IF +
Sbjct: 480 VLLAGASGTGKTVLVERILDQLSRKPDYCHFEFFHGSRSKGRKTESIQKDLRNIFTSCLQ 539
Query: 304 NAPAIIFIDEIDAIAPKREEVV---GEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDA 360
+APAI+ ++ +D +A E GE R+ + L+ + + VIA N
Sbjct: 540 HAPAIVVLENLDVLAHAAGEQSSQDGEYYNRMADTVYQLIVQYTTNNAIAVIATVNELQT 599
Query: 361 LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRF 420
L+ L P +GR V + + L +R
Sbjct: 600 LNKRLSSP--------------RGRH--------------------VFQTVARLPNLERA 625
Query: 421 DKEKI-KKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADL 479
D+E I +++ ++ AK + +K + +T G+ DL
Sbjct: 626 DREIILRELCSHINVAKDLDLVK------------------------FSNLTEGYRKCDL 661
Query: 480 AALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLI 539
A R + + + +++E L+ T + L+ ++ +
Sbjct: 662 VQFVERAIFYAYRISKTQPLLTND------QLIESLEHTNS---YCLQGIQSNQRTGNDA 712
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
+ + +++ GLE V L E + WP +YP F + GVLLYGPPGTGKT L
Sbjct: 713 DANEMRVEELPGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYLVS 772
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA 659
+AT I+++GPE+L+K++G+SE+ +R +F +AR A P ++F DE D++AP RG
Sbjct: 773 QLATSWNLRIISVKGPELLAKYIGQSEENVRNLFNRARSARPCVLFFDEFDSLAPKRG-H 831
Query: 660 EGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEK 719
+ VTDR++NQLLTE+DG+ GV VIAAT+RP++LDPALLR GR DRL+ P PD
Sbjct: 832 DSTGVTDRVVNQLLTELDGVEGLQGVTVIAATSRPELLDPALLRSGRIDRLVECPLPDAP 891
Query: 720 ARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEEL 779
AR IF+ + + L + VD A +T YTGADI ++ A M A++ A+A+ E+L
Sbjct: 892 ARVRIFEALSSTLSLDECVDFDWFAGKTANYTGADIQSILTSANMAAVKEALAQFGHEKL 951
Query: 780 EEESEKFLKSLIVTRKDFEVALKKVKPS-VTKYMMEYYR 817
++ K LI + F+ + S V KY Y R
Sbjct: 952 AKKISLKQKHLI---ESFQTTRPSLSASDVAKYHRTYAR 987
Score = 159 bits (399), Expect = 9e-38
Identities = 79/183 (43%), Positives = 113/183 (61%)
Query: 208 EVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVA 267
E+ E++ GL+ + + E++ P ++P +F + GVLLYGPPGTGKT L +A
Sbjct: 716 EMRVEELPGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYLVSQLA 775
Query: 268 NEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGE 327
N I++ GPE+++KY G+SEE +R +F A P ++F DE D++APKR
Sbjct: 776 TSWNLRIISVKGPELLAKYIGQSEENVRNLFNRARSARPCVLFFDEFDSLAPKRGHDSTG 835
Query: 328 VEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKE 387
V RVV+QLLT +DG++ V VIAAT+RP+ LDPAL R GR DR +E +PD R
Sbjct: 836 VTDRVVNQLLTELDGVEGLQGVTVIAATSRPELLDPALLRSGRIDRLVECPLPDAPARVR 895
Query: 388 ILQ 390
I +
Sbjct: 896 IFE 898
>sp|Q90732|PRS4_CHICK 26S PROTEASE REGULATORY SUBUNIT 4 (P26S4) >gi|7435735|pir||S74197
ATP-dependent 26S proteinase regulatory subunit 4 -
chicken >gi|1399943|gb|AAC60013.1| (U60187) 26S ATPase
complex subunit 4 [Gallus gallus]
Length = 440
Score = 242 bits (611), Expect = 1e-62
Identities = 122/252 (48%), Positives = 169/252 (66%), Gaps = 2/252 (0%)
Query: 538 LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLL 597
L + P + DIGGL++ QE++E+VE PL +P+ ++ +GI PPKGV+LYGPPGTGKTLL
Sbjct: 176 LEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLL 235
Query: 598 AKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR- 656
AKAVA ++ A F+ + G E++ K++G+ K +RE+FR A + P+I+FIDEIDAI R
Sbjct: 236 AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRY 295
Query: 657 -GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPA 715
+ GE+ R + +LL ++DG V VI ATNR + LDPAL+RPGR DR I P
Sbjct: 296 DSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 355
Query: 716 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLS 775
PDEK + IF++HT M LADDV L EL + +GADI A+C EA + ALR K++
Sbjct: 356 PDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVT 415
Query: 776 PEELEEESEKFL 787
E+ ++ E FL
Sbjct: 416 NEDFKKSKENFL 427
Score = 228 bits (575), Expect = 2e-58
Identities = 124/256 (48%), Positives = 164/256 (63%), Gaps = 9/256 (3%)
Query: 196 PQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPP 255
P ++ EK P+ TY DIGGL I++I+E VELPL HPE +E +GI+PPKGV+LYGPP
Sbjct: 169 PLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPP 228
Query: 256 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEID 315
GTGKTLLAKAVAN+ +A F+ + G E++ KY G+ + +RE+F+ AEE+ P+I+FIDEID
Sbjct: 229 GTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEID 288
Query: 316 AIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFD 372
AI KR GE E +R + +LL +DG SRG V VI ATNR + LDPAL RPGR D
Sbjct: 289 AIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 348
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKV 432
R+IE +PD++ +K I QIHT M + D + +I A +L D IK I +
Sbjct: 349 RKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGAD------IKAICTEA 402
Query: 433 SKAKSEEEIKDILRED 448
E + ED
Sbjct: 403 GLMALRERRMKVTNED 418
>emb|CAB55389.1| (AL117264) zwh0005.1 [Oryza sativa]
Length = 949
Score = 242 bits (610), Expect = 2e-62
Identities = 152/380 (40%), Positives = 228/380 (60%), Gaps = 21/380 (5%)
Query: 434 KAKSEEEIKDILREDRNLYIEVRTKLI-DKLLDELAEVTHGFVGADLAALAREAAMVVLR 492
K+ +EE+ ++++ E + + I DK + +LA T GF+ D+ AL +A +
Sbjct: 456 KSINEEQRRNLISETLHCVSTSADESINDKFVKDLAVQTSGFMPRDILALVADAGISFAH 515
Query: 493 RLIKEGKINPEAETIPREVL---------EELKVTKADFYEALKMVEPSALREV-LIEVP 542
+ ++ K N E + + + +L EE K +L+ + + +VP
Sbjct: 516 K-VETDKNNSEGDKL-KGILPTSSSSSQNEEKTFCKEYILSSLERAKKRNRAALGTPKVP 573
Query: 543 NVHWDDIGGLEDVKQELREAVEWPLKYPKAFK-RLGITPPKGVLLYGPPGTGKTLLAKAV 601
NV W+D+GGLE+VK+ + + ++ PL Y F +LG GVLLYGPPGTGKTLLAKAV
Sbjct: 574 NVKWEDVGGLEEVKKVILDTIQLPLLYKHLFSSKLG--KRSGVLLYGPPGTGKTLLAKAV 631
Query: 602 ATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARG-TAE 660
ATE NF++++GPE+++ +VGESEK +R+IF KAR A P +IF DE+D++APARG +++
Sbjct: 632 ATECSLNFLSVKGPELINMYVGESEKNVRDIFEKARSARPCVIFFDELDSLAPARGSSSD 691
Query: 661 GEKVTDRIINQLLTEMDGLVENS-GVVVIAATNRPDILDPALLRPGRFDRLILVPA-PDE 718
V DR+++QLL E+DGL +NS + +I ATNRPD+LD ALLRPGRFD+L+ V D
Sbjct: 692 SAGVMDRVVSQLLVEIDGLSDNSQDLFIIGATNRPDLLDSALLRPGRFDKLLYVGVNSDA 751
Query: 719 KARFEIFKVHTRGMPLADDVDLKELARR-TEGYTGADIAAVCREAAMNALRRAVAKLSPE 777
R I K TR L ++V L +A++ +TGADI A+C +A +A + +AK
Sbjct: 752 SYRERILKAQTRKYKLHENVSLLSIAQQCPPNFTGADIYALCADAWYHAAKN-LAKTLEA 810
Query: 778 ELEEESEKFLKSLIVTRKDF 797
+ SE +IV DF
Sbjct: 811 DPSRTSEASADDVIVEINDF 830
Score = 175 bits (440), Expect = 1e-42
Identities = 97/195 (49%), Positives = 131/195 (66%), Gaps = 7/195 (3%)
Query: 205 KIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFE-RLGIEPPKGVLLYGPPGTGKTLLA 263
K+P V +ED+GGL+E + I + ++LPL + LF +LG GVLLYGPPGTGKTLLA
Sbjct: 571 KVPNVKWEDVGGLEEVKKVILDTIQLPLLYKHLFSSKLGKR--SGVLLYGPPGTGKTLLA 628
Query: 264 KAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR-- 321
KAVA E + F+++ GPE+++ Y GESE+ +R+IF++A P +IF DE+D++AP R
Sbjct: 629 KAVATECSLNFLSVKGPELINMYVGESEKNVRDIFEKARSARPCVIFFDELDSLAPARGS 688
Query: 322 EEVVGEVEKRVVSQLLTLMDGLKSRGK-VIVIAATNRPDALDPALRRPGRFDREIEVGV- 379
V RVVSQLL +DGL + + +I ATNRPD LD AL RPGRFD+ + VGV
Sbjct: 689 SSDSAGVMDRVVSQLLVEIDGLSDNSQDLFIIGATNRPDLLDSALLRPGRFDKLLYVGVN 748
Query: 380 PDKQGRKEILQIHTR 394
D R+ IL+ TR
Sbjct: 749 SDASYRERILKAQTR 763
>sp|P46507|PRS6_MANSE 26S PROTEASE REGULATORY SUBUNIT 6B (ATPASE MS73)
>gi|559486|emb|CAA86294.1| (Z38135) DEAD-box ATPase
[Manduca sexta]
Length = 415
Score = 241 bits (608), Expect = 3e-62
Identities = 150/401 (37%), Positives = 228/401 (56%), Gaps = 51/401 (12%)
Query: 413 ELEKDDRFDK-EKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKL---------IDK 462
ELE +D + K +K+++++E + EE IKD R + Y+ + ++ I +
Sbjct: 31 ELESEDLYTKYKKLQRMLEFLEV--QEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQ 88
Query: 463 LLDELAEVTHGFVGADLAA-------------LAREAAMVVLRRLIKEGKINPEAETIPR 509
L+ + + T G VG+ + L + +A V L + N + +P
Sbjct: 89 FLEAVDQNT-GIVGSTTGSNYYVRILSTIDRELLKPSASVALHK-----HSNALVDVLPP 142
Query: 510 EVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKY 569
E + + +AD E P+V + DIGG++ KQE+REAVE PL +
Sbjct: 143 EADSSISMLQAD------------------EKPDVQYSDIGGMDTQKQEIREAVELPLTH 184
Query: 570 PKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRI 629
+ ++++GI PP+GVL+YGPPG GKT+LA AVA + A FI + G E + K++GE + +
Sbjct: 185 VELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGSEFVQKYLGEGPRMV 244
Query: 630 REIFRKARQASPAIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLTEMDGLVENSGVVV 687
R++FR A++ SPAIIFIDEIDAIA R A+ ++ RI+ +LL +MDG + + V V
Sbjct: 245 RDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKV 304
Query: 688 IAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRT 747
I ATNR D LDPALLRPGR DR I P PD + + IF T M L+++VDL+E R
Sbjct: 305 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARP 364
Query: 748 EGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLK 788
+ +GADI A+C+EA MNA+R + P++ E+ + +K
Sbjct: 365 DRVSGADINAICQEAGMNAVRENRYIVLPKDFEKGYKNNIK 405
Score = 202 bits (508), Expect = 2e-50
Identities = 113/268 (42%), Positives = 159/268 (59%), Gaps = 14/268 (5%)
Query: 189 NTEVEVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGI 243
N V+VLP + ++ ++ P+V Y DIGG+ ++IRE VELPL H EL+ ++GI
Sbjct: 134 NALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGI 193
Query: 244 EPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEE 303
EPP+GVL+YGPPG GKT+LA AVA+ A FI + G E + KY GE +R++F+ A+E
Sbjct: 194 EPPRGVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE 253
Query: 304 NAPAIIFIDEIDAIAPKREEVVGEVEK---RVVSQLLTLMDGLKSRGKVIVIAATNRPDA 360
N+PAIIFIDEIDAIA KR + ++ R++ +LL MDG V VI ATNR D
Sbjct: 254 NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 313
Query: 361 LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRF 420
LDPAL RPGR DR+IE +PD++ ++ I T M + + + E + + DR
Sbjct: 314 LDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFV------ARPDRV 367
Query: 421 DKEKIKKIIEKVSKAKSEEEIKDILRED 448
I I ++ E +L +D
Sbjct: 368 SGADINAICQEAGMNAVRENRYIVLPKD 395
>pir||T33633 hypothetical protein F56F11.4 - Caenorhabditis elegans
>gi|3790757|gb|AAC71778.1| (AF099922) similar to the AAA
family of ATPases; most similar to 26S protease
regulatory subunit 8 [Caenorhabditis elegans]
Length = 443
Score = 240 bits (607), Expect = 4e-62
Identities = 157/454 (34%), Positives = 251/454 (54%), Gaps = 36/454 (7%)
Query: 358 PDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKD 417
P + P R+P D D+Q + + T+ E +F + K + +K+
Sbjct: 3 PAPVFPNSRKPATLDAN-----SDEQTLRPYFK--TKVEQAEVNFRENNWKKRIISQKKN 55
Query: 418 DRFDKEKIKKIIEKVSK-AKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVG 476
FD EK+K +IEK+ A+ ++ ++ + + L +VR L+ + + L E VG
Sbjct: 56 QVFD-EKLKFLIEKLQTVAEKSINVRRLMAQQKELNGKVR--LLKEEISHLHE-QGSHVG 111
Query: 477 ADLAALAREAAMVVLR---RLIKEGKINPEAETIPREVLEELKVTKADFYEAL-KMVEPS 532
A+ ++ +V + I + + + T+ L+ +E L V+P
Sbjct: 112 EVCKAMDKKKVLVKNHPDGKYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPL 171
Query: 533 ALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGT 592
++ +VP+ ++ +GGL+ +E++E +E P+K+P+ F LGI PKGVLLYGPPGT
Sbjct: 172 VSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGT 231
Query: 593 GKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAI 652
GKTLLA+AVA ++ FI + G E++ K++GE + +RE+F AR+ +P+IIF+DEID+I
Sbjct: 232 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSI 291
Query: 653 APAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRL 710
+R G+ G+ R + +LL ++DG + VI ATNR DILD ALLRPGR DR
Sbjct: 292 GSSRVEGSRGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRK 351
Query: 711 ILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRA 770
I PAPDEKAR +I K+H+R M L + + ++A + G +GA++ +VC EA M ALR
Sbjct: 352 IEFPAPDEKARAQILKIHSRKMNLMRGIRMDKIAEQIPGASGAEVKSVCTEAGMFALRE- 410
Query: 771 VAKLSPEELEEESEKFLKSLIVTRKDFEVALKKV 804
+ + VT++DFE+A+ KV
Sbjct: 411 -----------------RRIHVTQEDFEMAVGKV 427
Score = 207 bits (522), Expect = 3e-52
Identities = 109/212 (51%), Positives = 148/212 (69%), Gaps = 8/212 (3%)
Query: 193 EVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPK 247
EVLP V+ + EK+P+ TYE +GGL I++I+E++ELP+KHPELF+ LGI PK
Sbjct: 162 EVLPSKVDPLVSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIELPVKHPELFDALGIAQPK 221
Query: 248 GVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPA 307
GVLLYGPPGTGKTLLA+AVA+ FI ++G E++ K+ GE +RE+F A E+AP+
Sbjct: 222 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 281
Query: 308 IIFIDEIDAIAPKREEVV--GEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
IIF+DEID+I R E G+ E +R + +LL +DG ++ + VI ATNR D LD A
Sbjct: 282 IIFMDEIDSIGSSRVEGSRGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSA 341
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGM 396
L RPGR DR+IE PD++ R +IL+IH+R M
Sbjct: 342 LLRPGRIDRKIEFPAPDEKARAQILKIHSRKM 373
>gb|AAG09749.1|AF233277_1 (AF233277) peroxin-6 [Penicillium chrysogenum]
Length = 1459
Score = 240 bits (606), Expect = 5e-62
Identities = 164/522 (31%), Positives = 269/522 (51%), Gaps = 79/522 (15%)
Query: 324 VVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQ 383
++ +E +++T M + + +V VIA T + + +R E E+G P+++
Sbjct: 859 LIRHIEVLTADRIVTAMSDILNDARV-VIATTTDVETIPEGIR--SLITHEFEMGAPEEK 915
Query: 384 GRKEILQ--IHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEI 441
R+ ILQ + RG+ + D + ++ L D D ++E+ + A++
Sbjct: 916 EREGILQNAVTERGIRLSADVDLGSIALKTAALVAGDLVD------VVERAAGARTAR-- 967
Query: 442 KDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKIN 501
L+ LAE + G++ V +R ++ G
Sbjct: 968 ----------------------LESLAEASKKISGSE----------VFVRDVLLAGGDG 995
Query: 502 PEAETIPREVLEELKVTKADFYEALKMVEPSALREV-LIEVPNVHWDDIGGLEDVKQELR 560
VTKADF A++ + + ++PNV WDD+GGL +VK L
Sbjct: 996 ARG------------VTKADFDAAVEAARKNFADSIGAPKIPNVGWDDVGGLTNVKDALV 1043
Query: 561 EAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSK 620
E ++ PL+ P+ F + G+ G+L YGPPGTGKTLLAKA+ATE NF +++GPE+L+
Sbjct: 1044 ETIQLPLERPELFAK-GMKKRSGILFYGPPGTGKTLLAKAIATEFSLNFFSVKGPELLNM 1102
Query: 621 WVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGT-AEGEKVTDRIINQLLTEMDGL 679
++GESE +R +F++AR A P ++F DE+D++AP RG + V DRI++QLL E+DG+
Sbjct: 1103 YIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGM 1162
Query: 680 ---VENS-GVVVIAATNRPDILDPALLRPGRFDRLILVPAPD-EKARFEIFKVHTRGMPL 734
ENS GV VI ATNRPD+LD ALLRPGRFD+++ + D + + I + TR L
Sbjct: 1163 NGGEENSGGVFVIGATNRPDLLDTALLRPGRFDKMLYLGVSDTHRKQATILEALTRKFAL 1222
Query: 735 ADDVDLKELARRTE-GYTGADIAAVCREAAMNALRRAVAKLSPE-------------ELE 780
DV L +A + YTGAD+ A+C +A + A+ R + + +
Sbjct: 1223 HPDVSLDRVAEQLPLTYTGADLYALCSDAMLKAITRKATAVDEKINALPNGPVSTAWFFD 1282
Query: 781 EESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEES 822
+ K +++VT +DF A ++ PSV+ +E++ + ++
Sbjct: 1283 HLATKEDVNVMVTEEDFLSAQGELVPSVSAKELEHFERIRQT 1324
Score = 189 bits (475), Expect = 1e-46
Identities = 101/240 (42%), Positives = 151/240 (62%), Gaps = 10/240 (4%)
Query: 181 KGIVQITYNTEVEVLPQ--AVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELF 238
+G+ + ++ VE + A + KIP V ++D+GGL + + E ++LPL+ PELF
Sbjct: 997 RGVTKADFDAAVEAARKNFADSIGAPKIPNVGWDDVGGLTNVKDALVETIQLPLERPELF 1056
Query: 239 ERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIF 298
+ G++ G+L YGPPGTGKTLLAKA+A E + F ++ GPE+++ Y GESE +R +F
Sbjct: 1057 AK-GMKKRSGILFYGPPGTGKTLLAKAIATEFSLNFFSVKGPELLNMYIGESEANVRRVF 1115
Query: 299 KEAEENAPAIIFIDEIDAIAPKR--EEVVGEVEKRVVSQLLTLMDGL----KSRGKVIVI 352
+ A + P ++F DE+D++APKR + G V R+VSQLL +DG+ ++ G V VI
Sbjct: 1116 QRARDARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMNGGEENSGGVFVI 1175
Query: 353 AATNRPDALDPALRRPGRFDREIEVGVPDKQGRK-EILQIHTRGMPIEPDFEKETVIKAL 411
ATNRPD LD AL RPGRFD+ + +GV D ++ IL+ TR + PD + V + L
Sbjct: 1176 GATNRPDLLDTALLRPGRFDKMLYLGVSDTHRKQATILEALTRKFALHPDVSLDRVAEQL 1235
>gb|AAF22523.1|AF123392_1 (AF123392) 26S proteasome AAA-ATPase subunit RPT3 [Arabidopsis
thaliana] >gi|8777330|dbj|BAA96920.1| (AB019228) 26S
proteasome AAA-ATPase subunit RPT3 [Arabidopsis
thaliana]
Length = 408
Score = 240 bits (606), Expect = 5e-62
Identities = 143/382 (37%), Positives = 223/382 (57%), Gaps = 19/382 (4%)
Query: 403 EKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDK 462
++E + LK LE+ F I E+ K + + +++LR + L+
Sbjct: 26 DEEDLYGRLKSLERQLEFTD-----IQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIG 80
Query: 463 LLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAET-IPREVLEELKVTKAD 521
E+ + +G VG+ + + + R + + P A + R + V +
Sbjct: 81 QFMEMVDQNNGIVGSTTGSNYYVRILSTINREL----LKPSASVALHRHSNALVDVLPPE 136
Query: 522 FYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPP 581
++ ++ S E P+V ++DIGG + KQE+REAVE PL + + +K++GI PP
Sbjct: 137 ADSSISLLSQS-------EKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPP 189
Query: 582 KGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASP 641
+GVLLYGPPGTGKT+LAKAVA + A FI + G E + K++GE + +R++FR A++ +P
Sbjct: 190 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAP 249
Query: 642 AIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDP 699
AIIFIDE+DAIA AR A+ ++ RI+ +LL +MDG + V VI ATNR D LDP
Sbjct: 250 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP 309
Query: 700 ALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVC 759
ALLRPGR DR I P PD + + +F+V T M L+D+VDL++ R + + A+IAA+C
Sbjct: 310 ALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAIC 369
Query: 760 REAAMNALRRAVAKLSPEELEE 781
+EA M+A+R+ + P++ E+
Sbjct: 370 QEAGMHAVRKNRYVILPKDFEK 391
Score = 208 bits (523), Expect = 3e-52
Identities = 108/228 (47%), Positives = 150/228 (65%), Gaps = 8/228 (3%)
Query: 189 NTEVEVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGI 243
N V+VLP + + + + P+V+Y DIGG ++IRE VELPL H EL++++GI
Sbjct: 127 NALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGI 186
Query: 244 EPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEE 303
+PP+GVLLYGPPGTGKT+LAKAVAN A FI + G E + KY GE +R++F+ A+E
Sbjct: 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE 246
Query: 304 NAPAIIFIDEIDAIAPKREEVVGEVEK---RVVSQLLTLMDGLKSRGKVIVIAATNRPDA 360
NAPAIIFIDE+DAIA R + ++ R++ +LL MDG V VI ATNR D
Sbjct: 247 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 306
Query: 361 LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVI 408
LDPAL RPGR DR+IE +PD++ ++ + Q+ T M + + + E +
Sbjct: 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYV 354
>gb|AAF47769.1| (AE003478) CG12010 gene product [Drosophila melanogaster]
Length = 736
Score = 240 bits (606), Expect = 5e-62
Identities = 188/638 (29%), Positives = 297/638 (46%), Gaps = 145/638 (22%)
Query: 219 EAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAIN 278
E +EK+ E ++ H P L+ GP GK+ L + I
Sbjct: 202 EQLEKLLETSKISFSH---------RFPTTALVVGPVDCGKSGLLSEFLRRHSCNCFYIT 252
Query: 279 GPEIMSKYYGESEERLREIFKEAEEN--------------------------APAIIFID 312
+++ Y GE+EE LR IF+ A+ P +I I+
Sbjct: 253 ASQVLRSYPGETEEELRRIFQAAQTFKEKLRPLCNFHSVCFTFEILISFIFIVPIVILIE 312
Query: 313 EIDAIAPKREEVVGEVEK---RVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPG 369
+++ + P + R+ ++L L+D L RG +I +A + PD+L
Sbjct: 313 DLELLCPSTAVADAKNSSNSLRISAELYKLLDALP-RG-IICLATSGVPDSLH------- 363
Query: 370 RFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKII 429
+ R+ ++ T MP E ++ +++ L E+ +
Sbjct: 364 ------------EHARRRFVREVTINMPSEG--QRRQLVEHLCEVHE------------- 396
Query: 430 EKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMV 489
+ LL+ +A T G+V ADL L R
Sbjct: 397 ---------------------------LNISQTLLEHIARNTQGYVIADLTLLLRRVQQQ 429
Query: 490 VLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVH--WD 547
+L K + + E I F ++L +PSA R + V + ++
Sbjct: 430 LLT------KDDFDIEHI--------------FLKSLSQTQPSASRSTDVRVSKMTAGFE 469
Query: 548 DIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQA 607
IGG+E +K+ L+ +V ++ AF R G++ PKGVLLYGPPG KT +AK +A E+
Sbjct: 470 VIGGMEALKRTLQVSVLAGIRQSAAFARFGLSLPKGVLLYGPPGCAKTTVAKCLAKEADM 529
Query: 608 NFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGE---KV 664
FIA EV S +VG +E+ I IF AR+ +P +IF+DEID++ R + G +V
Sbjct: 530 TFIATSAAEVYSPYVGCAERFISRIFDTARKNAPCLIFLDEIDSLVGRRTVSSGGGGGQV 589
Query: 665 TDRIINQLLTEMDGLVENSG---VVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 721
RI++ LLTEM+G+V ++V+AATNRPD++D ALLRPGRFD+LI VPAPDEK+R
Sbjct: 590 QLRILSTLLTEMNGIVGGGSQQHILVVAATNRPDMIDDALLRPGRFDKLIHVPAPDEKSR 649
Query: 722 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
+ K+H++ MP ++V L+E+A RT+ Y+GAD+ +C EAA+ A +R
Sbjct: 650 LALLKLHSQRMPFHENVFLQEIAARTDRYSGADLCNLCNEAAIEAFQRD----------- 698
Query: 782 ESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQF 819
K+ + +DFE L K K S+T+ ++ Y +F
Sbjct: 699 -----FKATEIELQDFEKVLTKQKSSLTQSQIDGYYKF 731
Score = 159 bits (398), Expect = 1e-37
Identities = 86/211 (40%), Positives = 130/211 (60%), Gaps = 9/211 (4%)
Query: 196 PQAVEVREEKIPEVT--YEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYG 253
P A + ++ ++T +E IGG++ ++ V ++ F R G+ PKGVLLYG
Sbjct: 451 PSASRSTDVRVSKMTAGFEVIGGMEALKRTLQVSVLAGIRQSAAFARFGLSLPKGVLLYG 510
Query: 254 PPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDE 313
PPG KT +AK +A EA+ FIA + E+ S Y G +E + IF A +NAP +IF+DE
Sbjct: 511 PPGCAKTTVAKCLAKEADMTFIATSAAEVYSPYVGCAERFISRIFDTARKNAPCLIFLDE 570
Query: 314 IDAIAPKREEVV----GEVEKRVVSQLLTLMDGLKSRGK---VIVIAATNRPDALDPALR 366
ID++ +R G+V+ R++S LLT M+G+ G ++V+AATNRPD +D AL
Sbjct: 571 IDSLVGRRTVSSGGGGGQVQLRILSTLLTEMNGIVGGGSQQHILVVAATNRPDMIDDALL 630
Query: 367 RPGRFDREIEVGVPDKQGRKEILQIHTRGMP 397
RPGRFD+ I V PD++ R +L++H++ MP
Sbjct: 631 RPGRFDKLIHVPAPDEKSRLALLKLHSQRMP 661
>gb|AAF08387.1|AF145306_1 (AF145306) 26S proteasome regulatory complex subunit p48A
[Drosophila melanogaster] >gi|7292602|gb|AAF48001.1|
(AE003485) Rpt3 gene product [Drosophila melanogaster]
Length = 413
Score = 239 bits (603), Expect = 1e-61
Identities = 145/379 (38%), Positives = 224/379 (58%), Gaps = 23/379 (6%)
Query: 401 DFEKETVIKALKELEKDDRFDK-EKIKKIIEKVSKAKSEEEIKDILREDRNLYIEV---- 455
D + + +L EL+ +D + + +K++K +E + EE IKD R + Y+
Sbjct: 17 DLKLKDAHSSLDELDMEDLYVRYKKLQKTLEFIEV--QEEYIKDEQRNLKKEYLHAQEEV 74
Query: 456 -RTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPRE---V 511
R + + ++ + E G + + +L + +E + P A +
Sbjct: 75 KRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRE-LLKPSASVALHKHSNA 133
Query: 512 LEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPK 571
L ++ +AD ++ M++P E P+V + DIGG++ KQE+REAVE PL + +
Sbjct: 134 LVDVLPPEAD--SSISMLQPD-------EKPDVSYADIGGMDMQKQEIREAVELPLTHFE 184
Query: 572 AFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIRE 631
+K++GI PP+GVL+YGPPG GKT+LAKAVA + A+FI + G E + K++GE + +R+
Sbjct: 185 LYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRD 244
Query: 632 IFRKARQASPAIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLTEMDGLVENSGVVVIA 689
+FR A++ +PAIIFIDEIDAIA R A+ ++ RI+ +LL +MDG + + V VI
Sbjct: 245 VFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIM 304
Query: 690 ATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEG 749
ATNR D LDPALLRPGR DR I P PD + + +F T M L++DVDL+E R +
Sbjct: 305 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSEDVDLEEFVARPDK 364
Query: 750 YTGADIAAVCREAAMNALR 768
+GADI A+C+EA M+A+R
Sbjct: 365 ISGADINAICQEAGMHAVR 383
Score = 204 bits (514), Expect = 3e-51
Identities = 107/228 (46%), Positives = 150/228 (64%), Gaps = 8/228 (3%)
Query: 189 NTEVEVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGI 243
N V+VLP + ++ ++ P+V+Y DIGG+ ++IRE VELPL H EL++++GI
Sbjct: 132 NALVDVLPPEADSSISMLQPDEKPDVSYADIGGMDMQKQEIREAVELPLTHFELYKQIGI 191
Query: 244 EPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEE 303
+PP+GVL+YGPPG GKT+LAKAVA+ A FI + G E + KY GE +R++F+ A+E
Sbjct: 192 DPPRGVLMYGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE 251
Query: 304 NAPAIIFIDEIDAIAPKREEVVGEVEK---RVVSQLLTLMDGLKSRGKVIVIAATNRPDA 360
NAPAIIFIDEIDAIA KR + ++ R++ +LL MDG V VI ATNR D
Sbjct: 252 NAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 311
Query: 361 LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVI 408
LDPAL RPGR DR+IE +PD++ ++ + T M + D + E +
Sbjct: 312 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSEDVDLEEFV 359
>pir||A44468 26S proteasome regulatory chain 4 [validated] - human
Length = 440
Score = 238 bits (601), Expect = 2e-61
Identities = 119/250 (47%), Positives = 168/250 (66%), Gaps = 2/250 (0%)
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
+ P + DIGGL++ QE++E+VE PL +P+ ++ +GI PPKGV+LYGPPGTGKTLLAK
Sbjct: 178 KAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAK 237
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR--G 657
AVA ++ A F+ + G E++ K++G+ K +RE+FR A + +P+I+FIDEIDAI R
Sbjct: 238 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDS 297
Query: 658 TAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 717
+ GE+ R + +LL ++DG V VI ATNR + LDPAL+RPGR DR I P PD
Sbjct: 298 NSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 357
Query: 718 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPE 777
EK + IF++HT M LADDV L +L + +GADI A+C EA + ALR K++ E
Sbjct: 358 EKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNE 417
Query: 778 ELEEESEKFL 787
+ ++ E L
Sbjct: 418 DFKKSKENVL 427
Score = 230 bits (580), Expect = 5e-59
Identities = 125/256 (48%), Positives = 165/256 (63%), Gaps = 9/256 (3%)
Query: 196 PQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPP 255
P ++ EK P+ TY DIGGL I++I+E VELPL HPE +E +GI+PPKGV+LYGPP
Sbjct: 169 PLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPP 228
Query: 256 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEID 315
GTGKTLLAKAVAN+ +A F+ + G E++ KY G+ + +RE+F+ AEE+AP+I+FIDEID
Sbjct: 229 GTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 288
Query: 316 AIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFD 372
AI KR GE E +R + +LL +DG SRG V VI ATNR + LDPAL RPGR D
Sbjct: 289 AIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 348
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKV 432
R+IE +PD++ +K I QIHT M + D + +I A +L D IK I +
Sbjct: 349 RKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGAD------IKAICTEA 402
Query: 433 SKAKSEEEIKDILRED 448
E + ED
Sbjct: 403 GLMALRERRMKVTNED 418
>gi|4506207 proteasome (prosome, macropain) 26S subunit, ATPase, 1; Proteasome
26S subunit, ATPase, 1 [Homo sapiens]
>gi|1172634|sp|Q03527|PRS4_HUMAN 26S PROTEASE REGULATORY
SUBUNIT 4 (P26S4) >gi|403456|gb|AAA35484.1| (L02426) 26S
protease (S4) regulatory subunit [Homo sapiens]
Length = 440
Score = 238 bits (601), Expect = 2e-61
Identities = 119/250 (47%), Positives = 168/250 (66%), Gaps = 2/250 (0%)
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
+ P + DIGGL++ QE++E+VE PL +P+ ++ +GI PPKGV+LYGPPGTGKTLLAK
Sbjct: 178 KAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAK 237
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR--G 657
AVA ++ A F+ + G E++ K++G+ K +RE+FR A + +P+I+FIDEIDAI R
Sbjct: 238 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDS 297
Query: 658 TAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 717
+ GE+ R + +LL ++DG V VI ATNR + LDPAL+RPGR DR I P PD
Sbjct: 298 NSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 357
Query: 718 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPE 777
EK + IF++HT M LADDV L +L + +GADI A+C EA + ALR K++ E
Sbjct: 358 EKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNE 417
Query: 778 ELEEESEKFL 787
+ ++ E L
Sbjct: 418 DFKKSKENVL 427
Score = 230 bits (580), Expect = 5e-59
Identities = 125/256 (48%), Positives = 165/256 (63%), Gaps = 9/256 (3%)
Query: 196 PQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPP 255
P ++ EK P+ TY DIGGL I++I+E VELPL HPE +E +GI+PPKGV+LYGPP
Sbjct: 169 PLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPP 228
Query: 256 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEID 315
GTGKTLLAKAVAN+ +A F+ + G E++ KY G+ + +RE+F+ AEE+AP+I+FIDEID
Sbjct: 229 GTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 288
Query: 316 AIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFD 372
AI KR GE E +R + +LL +DG SRG V VI ATNR + LDPAL RPGR D
Sbjct: 289 AIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 348
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKV 432
R+IE +PD++ +K I QIHT M + D + +I A +L D IK I +
Sbjct: 349 RKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGAD------IKAICTEA 402
Query: 433 SKAKSEEEIKDILRED 448
E + ED
Sbjct: 403 GLMALRERRMKVTNED 418
>sp|P48601|PRS4_DROME 26S PROTEASE REGULATORY SUBUNIT 4 (P26S4)
>gi|1066065|gb|AAB34134.1| (U39303) P26s4 [Drosophila
melanogaster]
Length = 439
Score = 238 bits (601), Expect = 2e-61
Identities = 120/260 (46%), Positives = 170/260 (65%), Gaps = 2/260 (0%)
Query: 530 EPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGP 589
+P L + P + DIGGL+ QE++E+VE PL +P+ ++ +GI PPKGV+LYGP
Sbjct: 167 DPMVTMMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGP 226
Query: 590 PGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEI 649
PGTGKTLLAKAVA ++ A F+ + G E++ K++G+ K +RE+FR A + +P+I+FIDEI
Sbjct: 227 PGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEI 286
Query: 650 DAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRF 707
DA+ R + GE+ R + +LL ++DG V VI ATNR + LDPAL+RPGR
Sbjct: 287 DAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRI 346
Query: 708 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNAL 767
DR I P PDEK + IF +HT M LA+DV+L EL + +GADI A+C EA + AL
Sbjct: 347 DRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMAL 406
Query: 768 RRAVAKLSPEELEEESEKFL 787
R K++ E+ ++ E L
Sbjct: 407 RERRMKVTNEDFKKSKESVL 426
Score = 226 bits (569), Expect = 1e-57
Identities = 122/256 (47%), Positives = 163/256 (63%), Gaps = 9/256 (3%)
Query: 196 PQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPP 255
P ++ EK P+ TY DIGGL I++I+E VELPL HPE +E +GI+PPKGV+LYGPP
Sbjct: 168 PMVTMMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPP 227
Query: 256 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEID 315
GTGKTLLAKAVAN+ +A F+ + G E++ KY G+ + +RE+F+ AEE+AP+I+FIDEID
Sbjct: 228 GTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 287
Query: 316 AIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFD 372
A+ KR GE E +R + +LL +DG SRG V VI ATNR + LDPAL RPGR D
Sbjct: 288 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 347
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKV 432
R+IE +PD++ ++ I IHT M + D +I A +L D IK I +
Sbjct: 348 RKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGAD------IKAICTEA 401
Query: 433 SKAKSEEEIKDILRED 448
E + ED
Sbjct: 402 GLMALRERRMKVTNED 417
>gi|6679501 protease (prosome, macropain) 26S subunit, ATPase 1 [Mus musculus]
>gi|11434737|ref|XP_007386.1| similar to proteasome
(prosome, macropain) 26S subunit, ATPase, 1 (H. sapiens)
[Homo sapiens] >gi|1346811|sp|P49014|PRS4_MOUSE 26S
PROTEASE REGULATORY SUBUNIT 4 (P26S4)
>gi|1066067|gb|AAB34137.1| (U39302) P26s4 [Mus musculus]
>gi|1395182|dbj|BAA09341.1| (D50696) proteasomal ATPase
(S4) [Rattus norvegicus]
Length = 440
Score = 238 bits (601), Expect = 2e-61
Identities = 119/250 (47%), Positives = 168/250 (66%), Gaps = 2/250 (0%)
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
+ P + DIGGL++ QE++E+VE PL +P+ ++ +GI PPKGV+LYGPPGTGKTLLAK
Sbjct: 178 KAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAK 237
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR--G 657
AVA ++ A F+ + G E++ K++G+ K +RE+FR A + +P+I+FIDEIDAI R
Sbjct: 238 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDS 297
Query: 658 TAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 717
+ GE+ R + +LL ++DG V VI ATNR + LDPAL+RPGR DR I P PD
Sbjct: 298 NSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 357
Query: 718 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPE 777
EK + IF++HT M LADDV L +L + +GADI A+C EA + ALR K++ E
Sbjct: 358 EKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNE 417
Query: 778 ELEEESEKFL 787
+ ++ E L
Sbjct: 418 DFKKSKENVL 427
Score = 230 bits (580), Expect = 5e-59
Identities = 125/256 (48%), Positives = 165/256 (63%), Gaps = 9/256 (3%)
Query: 196 PQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPP 255
P ++ EK P+ TY DIGGL I++I+E VELPL HPE +E +GI+PPKGV+LYGPP
Sbjct: 169 PLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPP 228
Query: 256 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEID 315
GTGKTLLAKAVAN+ +A F+ + G E++ KY G+ + +RE+F+ AEE+AP+I+FIDEID
Sbjct: 229 GTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 288
Query: 316 AIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFD 372
AI KR GE E +R + +LL +DG SRG V VI ATNR + LDPAL RPGR D
Sbjct: 289 AIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 348
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKV 432
R+IE +PD++ +K I QIHT M + D + +I A +L D IK I +
Sbjct: 349 RKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGAD------IKAICTEA 402
Query: 433 SKAKSEEEIKDILRED 448
E + ED
Sbjct: 403 GLMALRERRMKVTNED 418
>sp|P71408|FTSH_HELPY CELL DIVISION PROTEIN FTSH HOMOLOG >gi|7446580|pir||E64653 cell
division protein - Helicobacter pylori (strain 26695)
>gi|2314219|gb|AAD08115.1| (AE000614) cell division
protein (ftsH) [Helicobacter pylori 26695]
Length = 632
Score = 238 bits (600), Expect = 2e-61
Identities = 134/304 (44%), Positives = 191/304 (62%), Gaps = 17/304 (5%)
Query: 532 SALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPG 591
SA + + E PNV ++D+ G E+ K+E+ E V++ LKYP+ + LG PKGVLL GPPG
Sbjct: 155 SAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPG 213
Query: 592 TGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDA 651
TGKTLLAKAVA E+ F ++ G + +VG R+R++F A++ +P+IIFIDEIDA
Sbjct: 214 TGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDA 273
Query: 652 IAPAR---GTAEGEKVTDRIINQLLTEMDGL-VENSGVVVIAATNRPDILDPALLRPGRF 707
I +R G G ++ +NQLL EMDG EN+ V+V+AATNRP+ILDPAL+RPGRF
Sbjct: 274 IGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRF 333
Query: 708 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNAL 767
DR +LV PD R EI KVH +G+ LA+DV+L+E+A+ T G GAD+A + EAA+ A
Sbjct: 334 DRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAG 393
Query: 768 RRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMV 827
R ++ + L+E E+ + L E +++ P K + + ES ++
Sbjct: 394 RNNQKEVRQQHLKEAVERGIAGL-------EKKSRRISPKEKKIV-----AYHESGHAVI 441
Query: 828 GEST 831
E T
Sbjct: 442 SEMT 445
Score = 184 bits (463), Expect = 3e-45
Identities = 102/208 (49%), Positives = 138/208 (66%), Gaps = 6/208 (2%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAV 266
P V + D+ G +EA E++ E+V+ LK+PE + LG + PKGVLL GPPGTGKTLLAKAV
Sbjct: 165 PNVRFNDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 223
Query: 267 ANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREE--- 323
A EA+ F ++ G + + G R+R++F+ A++ AP+IIFIDEIDAI R
Sbjct: 224 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV 283
Query: 324 VVGEVEK-RVVSQLLTLMDGLKS-RGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPD 381
V G E+ + ++QLL MDG S VIV+AATNRP+ LDPAL RPGRFDR++ V PD
Sbjct: 284 VSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 343
Query: 382 KQGRKEILQIHTRGMPIEPDFEKETVIK 409
GR EIL++H +G+ + D + V K
Sbjct: 344 FNGRVEILKVHIKGVKLANDVNLQEVAK 371
>sp|P41836|PRS8_SCHPO 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG (LET1 PROTEIN)
>gi|626074|pir||S45176 26S proteinase regulatory subunit
8 homolog - fission yeast (Schizosaccharomyces pombe)
>gi|406051|gb|AAA61615.1| (U02280) Let1
[Schizosaccharomyces pombe] >gi|4106689|emb|CAA22628.1|
(AL035065) 26s protease regulatory subunit 8 homolog
[Schizosaccharomyces pombe]
Length = 403
Score = 237 bits (599), Expect = 3e-61
Identities = 136/364 (37%), Positives = 216/364 (58%), Gaps = 36/364 (9%)
Query: 453 IEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGK----INPEAETIP 508
+ R +L+ + + L E +VG + + + +V ++ EGK I+P+ +
Sbjct: 48 LNARVRLLREEIQLLQE-PGSYVGEVIKTMGKNKVLV---KVHPEGKYVVDISPDIDI-- 101
Query: 509 REVLEELKVT-KADFYEALKM----VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAV 563
+E+ ++V + D Y+ +K+ V+P ++ ++P+ ++ +GGLE +E++E +
Sbjct: 102 KEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVI 161
Query: 564 EWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVG 623
E P+K+P+ F+ LGI PKG+LLYGPPGTGKTLLA+AVA + FI + G E++ K++G
Sbjct: 162 ELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIG 221
Query: 624 ESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA---EGEKVTDRIINQLLTEMDGLV 680
E + +RE+F AR+ +P+IIF+DEID+I +R + G+ R + +LL ++DG
Sbjct: 222 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFE 281
Query: 681 ENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDL 740
+ VI ATNR DILDPALLRPGR DR I P P +AR EI ++H+R M L +DL
Sbjct: 282 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDL 341
Query: 741 KELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVA 800
K +A + G +GA++ VC EA M ALR + + VT++DFE+A
Sbjct: 342 KSIAEKMNGASGAELKGVCTEAGMFALRE------------------RRVHVTQEDFELA 383
Query: 801 LKKV 804
+ KV
Sbjct: 384 VAKV 387
Score = 215 bits (541), Expect = 2e-54
Identities = 110/230 (47%), Positives = 158/230 (67%), Gaps = 11/230 (4%)
Query: 192 VEVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPP 246
+++LP V+ + EKIP+ TYE +GGL++ I++I+E++ELP+KHPELFE LGI P
Sbjct: 120 IKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQP 179
Query: 247 KGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAP 306
KG+LLYGPPGTGKTLLA+AVA+ + FI ++G E++ KY GE +RE+F A E+AP
Sbjct: 180 KGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAP 239
Query: 307 AIIFIDEIDAIAPKREEVVG-----EVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDAL 361
+IIF+DEID+I R + G EV+ R + +LL +DG ++ + VI ATNR D L
Sbjct: 240 SIIFMDEIDSIGSSRSDSSGGSGDSEVQ-RTMLELLNQLDGFEATKNIKVIMATNRIDIL 298
Query: 362 DPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKAL 411
DPAL RPGR DR+IE P + R EIL+IH+R M + + +++ + +
Sbjct: 299 DPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKM 348
>sp|Q9ZM66|FTSH_HELPJ CELL DIVISION PROTEIN FTSH HOMOLOG >gi|7446579|pir||D71941
ATP-dependent zinc metallopeptidase - Helicobacter
pylori (strain J99) >gi|4154882|gb|AAD05932.1|
(AE001471) ATP-DEPENDENT ZINC METALLOPEPTIDASE
[Helicobacter pylori J99]
Length = 632
Score = 237 bits (599), Expect = 3e-61
Identities = 134/304 (44%), Positives = 191/304 (62%), Gaps = 17/304 (5%)
Query: 532 SALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPG 591
SA + + E PNV ++D+ G E+ K+E+ E V++ LKYP+ + LG PKGVLL GPPG
Sbjct: 155 SAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPG 213
Query: 592 TGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDA 651
TGKTLLAKAVA E+ F ++ G + +VG R+R++F A++ +P+IIFIDEIDA
Sbjct: 214 TGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDA 273
Query: 652 IAPAR---GTAEGEKVTDRIINQLLTEMDGL-VENSGVVVIAATNRPDILDPALLRPGRF 707
I +R G G ++ +NQLL EMDG EN+ V+V+AATNRP+ILDPAL+RPGRF
Sbjct: 274 IGKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRF 333
Query: 708 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNAL 767
DR +LV PD R EI KVH +G+ LA+DV+L+E+A+ T G GAD+A + EAA+ A
Sbjct: 334 DRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAG 393
Query: 768 RRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMV 827
R ++ + L+E E+ + L E +++ P K + + ES ++
Sbjct: 394 RNNQKEVKQQHLKEAVERGIAGL-------EKKSRRISPKEKKIV-----AYHESGHAVI 441
Query: 828 GEST 831
E T
Sbjct: 442 SEMT 445
Score = 184 bits (462), Expect = 4e-45
Identities = 101/208 (48%), Positives = 138/208 (65%), Gaps = 6/208 (2%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAV 266
P V + D+ G +EA E++ E+V+ LK+PE + LG + PKGVLL GPPGTGKTLLAKAV
Sbjct: 165 PNVRFNDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 223
Query: 267 ANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREE--- 323
A EA+ F ++ G + + G R+R++F+ A++ AP+IIFIDEIDAI R
Sbjct: 224 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGM 283
Query: 324 VVGEVEK-RVVSQLLTLMDGLKS-RGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPD 381
+ G E+ + ++QLL MDG S VIV+AATNRP+ LDPAL RPGRFDR++ V PD
Sbjct: 284 ISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 343
Query: 382 KQGRKEILQIHTRGMPIEPDFEKETVIK 409
GR EIL++H +G+ + D + V K
Sbjct: 344 FNGRVEILKVHIKGVKLANDVNLQEVAK 371
>gb|AAF56205.1| (AE003745) Pros26.4 gene product [Drosophila melanogaster]
Length = 439
Score = 237 bits (599), Expect = 3e-61
Identities = 119/252 (47%), Positives = 168/252 (66%), Gaps = 2/252 (0%)
Query: 538 LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLL 597
L + P + DIGGL+ QE++E+VE PL +P+ ++ +GI PPKGV+LYGPPGTGKTLL
Sbjct: 175 LEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLL 234
Query: 598 AKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR- 656
AKAVA ++ A F+ + G E++ K++G+ K +RE+FR A + +P+I+FIDEIDA+ R
Sbjct: 235 AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRY 294
Query: 657 -GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPA 715
+ GE+ R + +LL ++DG V VI ATNR + LDPAL+RPGR DR I P
Sbjct: 295 DSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 354
Query: 716 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLS 775
PDEK + IF +HT M LA+DV+L EL + +GADI A+C EA + ALR K++
Sbjct: 355 PDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALRERRMKVT 414
Query: 776 PEELEEESEKFL 787
E+ ++ E L
Sbjct: 415 NEDFKKSKESVL 426
Score = 226 bits (569), Expect = 1e-57
Identities = 122/256 (47%), Positives = 163/256 (63%), Gaps = 9/256 (3%)
Query: 196 PQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPP 255
P ++ EK P+ TY DIGGL I++I+E VELPL HPE +E +GI+PPKGV+LYGPP
Sbjct: 168 PMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPP 227
Query: 256 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEID 315
GTGKTLLAKAVAN+ +A F+ + G E++ KY G+ + +RE+F+ AEE+AP+I+FIDEID
Sbjct: 228 GTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 287
Query: 316 AIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFD 372
A+ KR GE E +R + +LL +DG SRG V VI ATNR + LDPAL RPGR D
Sbjct: 288 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 347
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKV 432
R+IE +PD++ ++ I IHT M + D +I A +L D IK I +
Sbjct: 348 RKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGAD------IKAICTEA 401
Query: 433 SKAKSEEEIKDILRED 448
E + ED
Sbjct: 402 GLMALRERRMKVTNED 417
>gb|AAF58864.1| (AE003831) TER94 gene product [alt 1] [Drosophila melanogaster]
Length = 297
Score = 237 bits (599), Expect = 3e-61
Identities = 120/259 (46%), Positives = 173/259 (66%), Gaps = 10/259 (3%)
Query: 580 PPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQA 639
P +GVL YGPPG GKTLLAKA+A E QANFI+++GPE+L+ W GESE +R+IF KAR A
Sbjct: 3 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSA 62
Query: 640 SPAIIFIDEIDAIAPARGTAEGEK--VTDRIINQLLTEMDGLVENSGVVVIAATNRPDIL 697
+P ++F DE+D+IA ARG G+ DR+INQ+LTEMDG+ V +I ATNRPDI+
Sbjct: 63 APCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 122
Query: 698 DPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAA 757
DPA+LRPGR D+LI +P PD+K+R I K + R PLA +VDL +A+ T+G++GAD+
Sbjct: 123 DPAILRPGRLDQLIYIPLPDDKSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTE 182
Query: 758 VCREAAMNALRRAV-AKLSPEELEEESEKFLKSL-------IVTRKDFEVALKKVKPSVT 809
+C+ A A+R+A+ A++ E+ E++ + +T FE A+K + SV+
Sbjct: 183 ICQRACKLAIRQAIEAEIRREKERAENQNSAMDMDEDDPVPEITSAHFEEAMKFARRSVS 242
Query: 810 KYMMEYYRQFEESRKRMVG 828
+ Y F ++ ++ G
Sbjct: 243 DNDIRKYEMFAQTLQQSRG 261
Score = 166 bits (417), Expect = 7e-40
Identities = 83/210 (39%), Positives = 132/210 (62%), Gaps = 9/210 (4%)
Query: 243 IEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAE 302
++P +GVL YGPPG GKTLLAKA+ANE A FI++ GPE+++ ++GESE +R+IF +A
Sbjct: 1 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKAR 60
Query: 303 ENAPAIIFIDEIDAIAPKREEVVGE---VEKRVVSQLLTLMDGLKSRGKVIVIAATNRPD 359
AP ++F DE+D+IA R VG+ RV++Q+LT MDG+ ++ V +I ATNRPD
Sbjct: 61 SAAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD 120
Query: 360 ALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDR 419
+DPA+ RPGR D+ I + +PD + R+ IL+ + R P+ + + + K +
Sbjct: 121 IIDPAILRPGRLDQLIYIPLPDDKSREAILKANLRKSPLAKEVDLTYIAKVTQ------G 174
Query: 420 FDKEKIKKIIEKVSKAKSEEEIKDILREDR 449
F + +I ++ K + I+ +R ++
Sbjct: 175 FSGADLTEICQRACKLAIRQAIEAEIRREK 204
>sp|P46466|PRS4_ORYSA 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 2) >gi|7435744|pir||T03776 tat binding protein
homolog - rice >gi|556558|dbj|BAA04615.1| (D17789) rice
homologue of Tat binding protein [Oryza sativa]
Length = 448
Score = 237 bits (598), Expect = 4e-61
Identities = 156/434 (35%), Positives = 238/434 (53%), Gaps = 23/434 (5%)
Query: 363 PALRRPG----RFDREIEVGV-PDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKD 417
P R+PG + DR+ E P + GRK+ Q P+ + K L K
Sbjct: 16 PGDRKPGGDGDKKDRKFEPSAAPSRVGRKQRKQKGPEAAARLPNVAP--LSKCRLRLLKL 73
Query: 418 DRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVR-TKLIDKLLDELAEVTHGFVG 476
+R K+ + E V+ + +D EDR+ ++R T + L+E+ + +H V
Sbjct: 74 ERV-KDYLLMEEEFVAAQERLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVS 132
Query: 477 ADLAALAREAAMVVLRRLIKEGKINPEAETIPR-EVLEELKVTKADFYEALKMVEPSALR 535
+ + V + + + ++ P + +VL + + + + V+P
Sbjct: 133 SSVGP----EYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDE-------VDPMVSV 181
Query: 536 EVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKT 595
+ + P + DIGGL+ QE++EAVE PL +P+ ++ +GI PPKGV+LYG PGTGKT
Sbjct: 182 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKT 241
Query: 596 LLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPA 655
LLAKAVA + A F+ + G E++ K++G+ K +RE+FR A + SP+I+FIDEIDA+
Sbjct: 242 LLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADELSPSIVFIDEIDAVGTK 301
Query: 656 RGTAE--GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILV 713
R A GE+ R + +LL ++DG V VI ATNR + LDPALLRPGR DR I
Sbjct: 302 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEF 361
Query: 714 PAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAK 773
P PD K R IF++HT M LADDV+L+E + ++GADI A+C EA + ALR K
Sbjct: 362 PLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMK 421
Query: 774 LSPEELEEESEKFL 787
++ + ++ EK +
Sbjct: 422 VTHADFKKAKEKVM 435
Score = 219 bits (551), Expect = 1e-55
Identities = 116/229 (50%), Positives = 153/229 (66%), Gaps = 3/229 (1%)
Query: 193 EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLY 252
EV P ++ EK P +Y DIGGL I++I+E VELPL HPEL+E +GI PPKGV+LY
Sbjct: 174 EVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILY 233
Query: 253 GPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFID 312
G PGTGKTLLAKAVAN +A F+ + G E++ KY G+ + +RE+F+ A+E +P+I+FID
Sbjct: 234 GEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADELSPSIVFID 293
Query: 313 EIDAIAPKREEV--VGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPG 369
EIDA+ KR + GE E +R + +LL +DG SRG V VI ATNR ++LDPAL RPG
Sbjct: 294 EIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPG 353
Query: 370 RFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDD 418
R DR+IE +PD + R+ I QIHT M + D E + E D
Sbjct: 354 RIDRKIEFPLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDEFSGAD 402
>sp|P34123|PRS6_DICDI 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 2) >gi|422298|pir||JN0611 probable transcription
factor DdTBP2 - slime mold (Dictyostelium discoideum)
>gi|290055|gb|AAA33253.1| (L16578) HIV1 TAT-binding
protein [Dictyostelium discoideum]
Length = 403
Score = 236 bits (597), Expect = 6e-61
Identities = 153/404 (37%), Positives = 226/404 (55%), Gaps = 39/404 (9%)
Query: 404 KETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEI-----KDILREDRNLYIEV-RT 457
K TV K + D + +K+K + K+ +EE K++ RE + EV R
Sbjct: 10 KVTVTKEASHHREADLY--QKMKSLESKLDFFNIQEEYIKYEYKNLKRELLHAQEEVKRI 67
Query: 458 KLIDKLLDELAEVTHGFVGADLAALAREAAMVVL----RRLIK-------EGKINPEAET 506
+ + L+ +L E+ G + + +L R L+K + N +T
Sbjct: 68 RSVPLLIGQLLEMVDSNTGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDT 127
Query: 507 IPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWP 566
+P E + + AD E P+ + DIGG + KQE+REAVE P
Sbjct: 128 LPPESDSSIHLLGAD------------------EKPSESYSDIGGGDIQKQEMREAVELP 169
Query: 567 LKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESE 626
L + +K++GI PP+GVLLYGPPGTGKT+LAKAVA + A FI + G E + K++GE
Sbjct: 170 LTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSEFVQKYLGEGP 229
Query: 627 KRIREIFRKARQASPAIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLTEMDGLVENSG 684
+ +R++FR AR+ SPAIIFIDEIDAIA R A+ ++ RI+ +LL +MDG +
Sbjct: 230 RLVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILMELLNQMDGFDVSVN 289
Query: 685 VVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELA 744
V VI ATNR D LDPALLRPGR DR I P PD + + IF+V T M L+D+VDL++
Sbjct: 290 VKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYV 349
Query: 745 RRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLK 788
R + +GA+I ++C+EA M+A+R+ + P++ E+ + +K
Sbjct: 350 SRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKDFEKGYKASIK 393
Score = 196 bits (494), Expect = 7e-49
Identities = 104/228 (45%), Positives = 147/228 (63%), Gaps = 9/228 (3%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAV 266
P +Y DIGG +++RE VELPL H L++++GI+PP+GVLLYGPPGTGKT+LAKAV
Sbjct: 145 PSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 204
Query: 267 ANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVG 326
A+ +A FI + G E + KY GE +R++F+ A EN+PAIIFIDEIDAIA KR +
Sbjct: 205 AHHTSAAFIRVVGSEFVQKYLGEGPRLVRDVFRLARENSPAIIFIDEIDAIATKRFDAQT 264
Query: 327 EVEK---RVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQ 383
++ R++ +LL MDG V VI ATNR D LDPAL RPGR DR+IE +PD++
Sbjct: 265 GADREVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRR 324
Query: 384 GRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEK 431
++ I Q+ T M + + + E + + D+ +I+ I ++
Sbjct: 325 QKRLIFQVITSKMNLSDEVDLEDYV------SRPDKLSGAEIQSICQE 366
>sp|P54778|PRS6_SOLTU 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG >gi|7435738|pir||T07110
vacuolar proton-ATPase chain E - potato
>gi|1155334|gb|AAB67835.1| (U43398) POTATP1 [Solanum
tuberosum]
Length = 413
Score = 236 bits (597), Expect = 6e-61
Identities = 120/244 (49%), Positives = 171/244 (69%), Gaps = 2/244 (0%)
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
E P+V ++DIGG + KQE+REAVE PL + + +K++GI PP+GVLLYGPPGTGKT+LAK
Sbjct: 153 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 212
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA 659
AVA + A FI + G E + K++GE + +R++FR A++ +PAIIFIDE+DAIA AR A
Sbjct: 213 AVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDA 272
Query: 660 E--GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 717
+ ++ RI+ +LL +MDG + V VI ATNR D LDPALLRPGR DR I P PD
Sbjct: 273 QTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 332
Query: 718 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPE 777
+ + +F+V T M L D+VDL++ R + + A+I A+C+EA M+A+R+ + P+
Sbjct: 333 RRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPK 392
Query: 778 ELEE 781
+ E+
Sbjct: 393 DFEK 396
Score = 206 bits (520), Expect = 6e-52
Identities = 108/228 (47%), Positives = 150/228 (65%), Gaps = 8/228 (3%)
Query: 189 NTEVEVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGI 243
N V+VLP + + + + P+VTY DIGG ++IRE VELPL H EL++++GI
Sbjct: 132 NALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGI 191
Query: 244 EPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEE 303
+PP+GVLLYGPPGTGKT+LAKAVA+ A FI + G E + KY GE +R++F+ A+E
Sbjct: 192 DPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE 251
Query: 304 NAPAIIFIDEIDAIAPKREEVVGEVEK---RVVSQLLTLMDGLKSRGKVIVIAATNRPDA 360
NAPAIIFIDE+DAIA R + ++ R++ +LL MDG V VI ATNR D
Sbjct: 252 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 311
Query: 361 LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVI 408
LDPAL RPGR DR+IE +PD++ ++ + Q+ T M + + + E +
Sbjct: 312 LDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYV 359
>pir||T27048 hypothetical protein Y49E10.1 - Caenorhabditis elegans
>gi|3979998|emb|CAB11558.1| (Z98866) contains similarity
to Pfam domain: PF00004 (ATPases associated with various
cellular activities (AAA)), Score=327.8,
E-value=4.1e-95, N=1~cDNA EST yk78f3.3 comes from this
gene~cDNA EST yk91c7.3 comes from this gene~cDNA EST
yk78f3.5 comes fr>
Length = 416
Score = 236 bits (597), Expect = 6e-61
Identities = 150/424 (35%), Positives = 241/424 (56%), Gaps = 52/424 (12%)
Query: 397 PIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVR 456
P +P +K T K L K + K+ +KV A + ++ + + L +VR
Sbjct: 13 PSKPTAQKLTEESDEKTLRK---YFSTKVDDAQQKV--ADKSQNVRRLQAQRNELNTKVR 67
Query: 457 TKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELK 516
++ + L +L E +VG A+ ++ +V K++PE + + +V + +
Sbjct: 68 --MLKEELQQLHE-QGSYVGEVSKAMDKKKVLV---------KVHPEGKYVV-DVDKSID 114
Query: 517 VT----------KADFYEALKM----VEPSALREVLIEVPNVHWDDIGGLEDVKQELREA 562
+ +AD Y K+ V+P ++ +VP+ ++ +GGL+ +E++E
Sbjct: 115 INSLNTGARVALRADSYALHKLLPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEV 174
Query: 563 VEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWV 622
+E P+K+P+ F LGI PKGVLL+GPPGTGKTLLA+AVA ++ FI + G E++ K++
Sbjct: 175 IELPVKHPELFDALGIAQPKGVLLFGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFI 234
Query: 623 GESEKRIREIFRKARQASPAIIFIDEIDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLV 680
GE + +RE+F AR+ +P+IIF+DEID+I +R G++ G+ R + +LL ++DG
Sbjct: 235 GEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFE 294
Query: 681 ENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDL 740
+ VI ATNR DILDPALLRPGR DR I PAPDEKAR +I K+H+R M L +++
Sbjct: 295 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPAPDEKARADILKIHSRKMNLMRGINM 354
Query: 741 KELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVA 800
++A + G +GA++ +VC EA M ALR + + VT++DFE+A
Sbjct: 355 AKIAEQIPGASGAEVKSVCTEAGMFALRE------------------RRIHVTQEDFEMA 396
Query: 801 LKKV 804
+ KV
Sbjct: 397 VGKV 400
Score = 207 bits (521), Expect = 5e-52
Identities = 104/196 (53%), Positives = 143/196 (72%), Gaps = 3/196 (1%)
Query: 204 EKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLA 263
EK+P+ TYE +GGL + I++I+E++ELP+KHPELF+ LGI PKGVLL+GPPGTGKTLLA
Sbjct: 151 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLFGPPGTGKTLLA 210
Query: 264 KAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREE 323
+AVA+ FI ++G E++ K+ GE +RE+F A E+AP+IIF+DEID+I R E
Sbjct: 211 RAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRVE 270
Query: 324 --VVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVP 380
G+ E +R + +LL +DG ++ + VI ATNR D LDPAL RPGR DR+IE P
Sbjct: 271 GSSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPAP 330
Query: 381 DKQGRKEILQIHTRGM 396
D++ R +IL+IH+R M
Sbjct: 331 DEKARADILKIHSRKM 346
>gb|AAB66377.1| (U97567) FtsH [Helicobacter pylori]
Length = 632
Score = 236 bits (596), Expect = 7e-61
Identities = 135/304 (44%), Positives = 192/304 (62%), Gaps = 17/304 (5%)
Query: 532 SALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPG 591
SA + + E PNV ++D+ G E+ K+E+ E V++ LKYP+ + LG PKGVLL GPPG
Sbjct: 155 SAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPG 213
Query: 592 TGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDA 651
TGKTLLAKAVA E+ F ++ G + +VG R+R++F A++ +P+IIFIDEIDA
Sbjct: 214 TGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDA 273
Query: 652 IAPAR---GTAEGEKVTDRIINQLLTEMDGL-VENSGVVVIAATNRPDILDPALLRPGRF 707
I +R G G ++ +NQ L EMDG EN+ V+V+AATNRP+ILDPAL+RPGRF
Sbjct: 274 IGKSRAAGGVVSGNDEREQTLNQFLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRF 333
Query: 708 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNAL 767
DR +LV PD R EI KVH +G+ LA+DV+L+E+A+ T G GAD+A + EAA+ A
Sbjct: 334 DRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAG 393
Query: 768 RRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMV 827
R ++ + L+E E+ + L E +++ P K M+ Y+ ES ++
Sbjct: 394 RNNQKEVKLQHLKEAVERGIAGL-------EKKSRRISPK-EKKMVAYH----ESGHAVI 441
Query: 828 GEST 831
E T
Sbjct: 442 SEMT 445
Score = 183 bits (459), Expect = 8e-45
Identities = 101/208 (48%), Positives = 137/208 (65%), Gaps = 6/208 (2%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAV 266
P V + D+ G +EA E++ E+V+ LK+PE + LG + PKGVLL GPPGTGKTLLAKAV
Sbjct: 165 PNVRFNDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 223
Query: 267 ANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREE--- 323
A EA+ F ++ G + + G R+R++F+ A++ AP+IIFIDEIDAI R
Sbjct: 224 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV 283
Query: 324 VVGEVEK-RVVSQLLTLMDGLKS-RGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPD 381
V G E+ + ++Q L MDG S VIV+AATNRP+ LDPAL RPGRFDR++ V PD
Sbjct: 284 VSGNDEREQTLNQFLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 343
Query: 382 KQGRKEILQIHTRGMPIEPDFEKETVIK 409
GR EIL++H +G+ + D + V K
Sbjct: 344 FNGRVEILKVHIKGVKLANDVNLQEVAK 371
>gb|AAG09748.1|AF233276_1 (AF233276) peroxin-1 [Penicillium chrysogenum]
Length = 1213
Score = 236 bits (595), Expect = 1e-60
Identities = 187/658 (28%), Positives = 312/658 (46%), Gaps = 81/658 (12%)
Query: 203 EEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLL 262
E+ +PE + +G I M+E L + + +L+ G G GKT L
Sbjct: 526 EDPLPETAPQLVG--------IDSMIEQSLNN--------LTKSSSILVTGGLGAGKTAL 569
Query: 263 AKAVANEA------NAYFIAINGPEIMSKYYGESEERLREIFKEAEENA----PAIIFID 312
+A+ N + + +E L +F A A +++ ++
Sbjct: 570 THLLAHRLRRDHLFNVKYFSCRKLVTDETRISNIKETLNRLFMSASWCARLGGQSVVILE 629
Query: 313 EIDAIAPKREEV-VGEVEKR------VVSQLLTLMDGLKSRGKVIVIAATNRPDALDPAL 365
++D + P E+ VG R V+ ++ L S V+++A ++L+ +
Sbjct: 630 DLDKLCPAETELQVGGDNGRSRQNSEVICSMVREYCALNS--SVVLLATAQAKESLNNVI 687
Query: 366 RRPGRFDREI-EVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEK 424
G REI + PDK+GR+ +L+ T +P ++A +D D
Sbjct: 688 IG-GHVVREIINMRAPDKEGRRRVLEKLTS--EDKPTESSNGHVRATSSSTQDSWLDPSN 744
Query: 425 IKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAR 484
S+ S ++ D ++ L ELA T G++ DL L
Sbjct: 745 ------PGSRPSSSGGDGFVIGRD-----------VEYL--ELAGKTDGYMPGDLVLLVA 785
Query: 485 EAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNV 544
A L R + + + T+ + DF ALK P++LR V +
Sbjct: 786 RARNEALIRSVSDLTATSKMITLGLQ----------DFESALKDFTPASLRNVTLTSSTT 835
Query: 545 HWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATE 604
+ +GGL + ++ L E +++P KY F + + G+LLYG PG GKT+LA AVA E
Sbjct: 836 TFSSVGGLFETRKMLLETLQYPTKYAPIFAQCPLRLRSGLLLYGFPGCGKTMLASAVAGE 895
Query: 605 SQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKV 664
NFI+++GPE+L+K++G SEK +R++F +A+ A P ++F DE D+IAP RG + V
Sbjct: 896 CGLNFISVKGPEILNKYIGASEKSVRDLFERAQAARPCVLFFDEFDSIAPKRG-HDSTGV 954
Query: 665 TDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEI 724
TDR++NQLLT+MDG SGV V+AAT+RPD++DPALLRPGR D+ +L P+ R +I
Sbjct: 955 TDRVVNQLLTQMDGAEGLSGVYVLAATSRPDLIDPALLRPGRLDKSLLCDMPNHADRVDI 1014
Query: 725 FKVHTRGMPLADDVD--LKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPE----- 777
+ + ++D+V L ++A +TEG++GAD+ AV A + A+ A+ S +
Sbjct: 1015 IRSVAEKLKMSDEVTSRLGDIATQTEGFSGADLQAVVYNAHLEAVHDALGDHSTDTAKPN 1074
Query: 778 ----ELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGEST 831
S+ F++ L + ++ ++ P+V +E + R+R V + T
Sbjct: 1075 AKSKSANASSKSFIQFLYSSSEEASGSVSMPPPAVISAKLEAIKN-SRRRQRQVEQGT 1131
>gi|5901990 katanin p60 subunit A 1 [Homo sapiens] >gi|3283072|gb|AAC25114.1|
(AF056022) p60 katanin [Homo sapiens]
Length = 491
Score = 235 bits (594), Expect = 1e-60
Identities = 144/332 (43%), Positives = 201/332 (60%), Gaps = 20/332 (6%)
Query: 496 KEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDV 555
+E +P A T P + D EAL+ R+++ + PNV WDDI L +
Sbjct: 165 EEKNKSPAAVTEPETNKFDSTGYDKDLVEALE-------RDIISQNPNVRWDDIADLVEA 217
Query: 556 KQELREAVEWPLKYPKAFKRLGITPP-KGVLLYGPPGTGKTLLAKAVATESQANFIAIRG 614
K+ L+EAV P+ P+ FK GI P KGVL+ GPPGTGKTLLAKAVATE + F +
Sbjct: 218 KKLLKEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSS 275
Query: 615 PEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLT 674
+ SK+ GESEK +R +F AR SPA IFIDEID+I RGT+E + + R+ +LL
Sbjct: 276 STLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLV 335
Query: 675 EMDGLVENSG-------VVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKV 727
+MDG+ S V+V+AATN P +D AL R R ++ I +P P K R E+ ++
Sbjct: 336 QMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRI 393
Query: 728 HTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFL 787
R + LADDVDL +A EGY+GADI VCR+A++ A+RR + L+PEE+ S++ +
Sbjct: 394 SLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSKEEM 453
Query: 788 KSLIVTRKDFEVALKKVKPSVTKYMMEYYRQF 819
+ T +DFE+ALKKV SV+ +E Y ++
Sbjct: 454 -HMPTTMEDFEMALKKVSKSVSAADIERYEKW 484
Score = 147 bits (367), Expect = 5e-34
Identities = 94/256 (36%), Positives = 149/256 (57%), Gaps = 15/256 (5%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPP-KGVLLYGPPGTGKTLLAKA 265
P V ++DI L EA + ++E V LP+ PE F+ GI P KGVL+ GPPGTGKTLLAKA
Sbjct: 204 PNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKA 261
Query: 266 VANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR-EEV 324
VA E F ++ + SKY GESE+ +R +F+ A +PA IFIDEID+I +R
Sbjct: 262 VATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSE 321
Query: 325 VGEVEKRVVSQLLTLMDGLKSRGK-------VIVIAATNRPDALDPALRRPGRFDREIEV 377
E +RV ++LL MDG+ + V+V+AATN P +D ALRR R ++ I +
Sbjct: 322 EHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYI 379
Query: 378 GVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDD--RFDKEKIKKIIEKVSKA 435
+P +GR+E+L+I R + + D + ++ + ++ D ++ + + +
Sbjct: 380 PLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEG 439
Query: 436 KSEEEIKDILREDRNL 451
+ EEI+++ +E+ ++
Sbjct: 440 LTPEEIRNLSKEEMHM 455
>emb|CAB88114.1| (AL078581) dJ12G14.4 (katanin p60 (ATPase-containing) subunit A 1)
[Homo sapiens]
Length = 384
Score = 235 bits (594), Expect = 1e-60
Identities = 144/332 (43%), Positives = 201/332 (60%), Gaps = 20/332 (6%)
Query: 496 KEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDV 555
+E +P A T P + D EAL+ R+++ + PNV WDDI L +
Sbjct: 58 EEKNKSPAAVTEPETNKFDSTGYDKDLVEALE-------RDIISQNPNVRWDDIADLVEA 110
Query: 556 KQELREAVEWPLKYPKAFKRLGITPP-KGVLLYGPPGTGKTLLAKAVATESQANFIAIRG 614
K+ L+EAV P+ P+ FK GI P KGVL+ GPPGTGKTLLAKAVATE + F +
Sbjct: 111 KKLLKEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSS 168
Query: 615 PEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLT 674
+ SK+ GESEK +R +F AR SPA IFIDEID+I RGT+E + + R+ +LL
Sbjct: 169 STLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLV 228
Query: 675 EMDGLVENSG-------VVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKV 727
+MDG+ S V+V+AATN P +D AL R R ++ I +P P K R E+ ++
Sbjct: 229 QMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRI 286
Query: 728 HTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFL 787
R + LADDVDL +A EGY+GADI VCR+A++ A+RR + L+PEE+ S++ +
Sbjct: 287 SLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSKEEM 346
Query: 788 KSLIVTRKDFEVALKKVKPSVTKYMMEYYRQF 819
+ T +DFE+ALKKV SV+ +E Y ++
Sbjct: 347 -HMPTTMEDFEMALKKVSKSVSAADIERYEKW 377
Score = 147 bits (367), Expect = 5e-34
Identities = 94/256 (36%), Positives = 149/256 (57%), Gaps = 15/256 (5%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPP-KGVLLYGPPGTGKTLLAKA 265
P V ++DI L EA + ++E V LP+ PE F+ GI P KGVL+ GPPGTGKTLLAKA
Sbjct: 97 PNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKA 154
Query: 266 VANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR-EEV 324
VA E F ++ + SKY GESE+ +R +F+ A +PA IFIDEID+I +R
Sbjct: 155 VATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSE 214
Query: 325 VGEVEKRVVSQLLTLMDGLKSRGK-------VIVIAATNRPDALDPALRRPGRFDREIEV 377
E +RV ++LL MDG+ + V+V+AATN P +D ALRR R ++ I +
Sbjct: 215 EHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYI 272
Query: 378 GVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDD--RFDKEKIKKIIEKVSKA 435
+P +GR+E+L+I R + + D + ++ + ++ D ++ + + +
Sbjct: 273 PLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEG 332
Query: 436 KSEEEIKDILREDRNL 451
+ EEI+++ +E+ ++
Sbjct: 333 LTPEEIRNLSKEEMHM 348
>pir||T49402 probable 26S proteinase subunit (SUG1) protein [imported] -
Neurospora crassa >gi|7800937|emb|CAB91305.1| (AL355928)
probable 26S protease subunit (SUG1) protein [Neurospora
crassa]
Length = 389
Score = 235 bits (594), Expect = 1e-60
Identities = 145/403 (35%), Positives = 230/403 (56%), Gaps = 35/403 (8%)
Query: 418 DRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGA 477
D + KI+ + ++ K ++ + R D N R +L+ + L L + +VG
Sbjct: 4 DNYYHNKIEAMKLEILKGQAVLRRLEAQRNDYNS----RVRLLREELG-LLQQPGSYVGE 58
Query: 478 DLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTK----------ADFYEALK 527
+ ++ + +V K++PE + + +V + + +TK +D Y+ K
Sbjct: 59 VVKVMSTKKVLV---------KVHPEGKYVV-DVSDNVDITKLTVGKRVTLLSDSYKLEK 108
Query: 528 M----VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKG 583
M V+P ++ +VP+ +D IGGL+ +E++E +E LK+P+ F+ LGI PKG
Sbjct: 109 MLPSSVDPLVSLMMVEKVPDSTYDMIGGLDQQIKEIKEVIELGLKHPELFESLGIAQPKG 168
Query: 584 VLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAI 643
VLLYGPPGTGKTLLA+AVA + FI + G E++ K++GE + +RE+F AR+ +P+I
Sbjct: 169 VLLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 228
Query: 644 IFIDEIDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPAL 701
IF+DEID+I +R G++ G+ R + +LL ++DG + VI ATNR DILDPAL
Sbjct: 229 IFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEPTKNIKVIMATNRLDILDPAL 288
Query: 702 LRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCRE 761
LRPGR DR I P P +AR +I ++H+R M L ++L ++A + G +GA++ VC E
Sbjct: 289 LRPGRIDRKIEFPPPSVEARADILRIHSRKMNLTRGINLTKIAEKMNGCSGAELKGVCTE 348
Query: 762 AAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKV 804
A M ALR ++ E+ E + K L D EV+L K+
Sbjct: 349 AGMYALRERRVHVTQEDFELATAKILNK----HDDKEVSLAKL 387
Score = 206 bits (520), Expect = 6e-52
Identities = 112/228 (49%), Positives = 157/228 (68%), Gaps = 9/228 (3%)
Query: 178 TIPKGIVQITYNTEVE-VLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELP 231
T+ K + ++ + ++E +LP +V+ + EK+P+ TY+ IGGL + I++I+E++EL
Sbjct: 92 TVGKRVTLLSDSYKLEKMLPSSVDPLVSLMMVEKVPDSTYDMIGGLDQQIKEIKEVIELG 151
Query: 232 LKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESE 291
LKHPELFE LGI PKGVLLYGPPGTGKTLLA+AVA+ + FI ++G E++ KY GE
Sbjct: 152 LKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGS 211
Query: 292 ERLREIFKEAEENAPAIIFIDEIDAIAPKREE--VVGEVE-KRVVSQLLTLMDGLKSRGK 348
+RE+F A E+AP+IIF+DEID+I R E G+ E +R + +LL +DG +
Sbjct: 212 RMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEPTKN 271
Query: 349 VIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGM 396
+ VI ATNR D LDPAL RPGR DR+IE P + R +IL+IH+R M
Sbjct: 272 IKVIMATNRLDILDPALLRPGRIDRKIEFPPPSVEARADILRIHSRKM 319
>gb|AAF91245.1|AF227501_1 (AF227501) proteasome regulatory ATPase subunit 3 [Trypanosoma
brucei]
Length = 403
Score = 235 bits (594), Expect = 1e-60
Identities = 118/241 (48%), Positives = 168/241 (68%), Gaps = 2/241 (0%)
Query: 542 PNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAV 601
PNV + D+GGL+ KQE+REAVE PL + + ++GI PP+GVLLYGPPGTGKT+L KAV
Sbjct: 144 PNVTYSDVGGLDMQKQEIREAVELPLTHASLYDQIGIDPPRGVLLYGPPGTGKTMLVKAV 203
Query: 602 ATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE- 660
A + A FI++ G E + K++GE +++R++FR AR+ +PAIIFIDE+D+IA R A+
Sbjct: 204 AHHTNAAFISVVGSEFVQKYLGEGPRKVRDVFRLARENAPAIIFIDEVDSIATKRFDAQT 263
Query: 661 -GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEK 719
++ R++ +LL +MDG + + V VI ATNR D LDPA+LRPGR DR I P PD +
Sbjct: 264 GADREVQRVLIELLAQMDGFDQTTNVKVIMATNRWDTLDPAILRPGRLDRKIEFPYPDRR 323
Query: 720 ARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEEL 779
+ +F+V T M L+ +VDL+E R E TGADI ++C EA M A+R+ + P+++
Sbjct: 324 QKRLVFQVCTSRMNLSPEVDLEEFVTRPERLTGADIQSICHEAGMLAVRKNRYVVLPKDI 383
Query: 780 E 780
E
Sbjct: 384 E 384
Score = 216 bits (545), Expect = 7e-55
Identities = 111/238 (46%), Positives = 157/238 (65%), Gaps = 8/238 (3%)
Query: 189 NTEVEVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGI 243
N+ V++LP ++ +R+E P VTY D+GGL ++IRE VELPL H L++++GI
Sbjct: 121 NSCVQILPNEIDSAVHVLRKEDRPNVTYSDVGGLDMQKQEIREAVELPLTHASLYDQIGI 180
Query: 244 EPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEE 303
+PP+GVLLYGPPGTGKT+L KAVA+ NA FI++ G E + KY GE ++R++F+ A E
Sbjct: 181 DPPRGVLLYGPPGTGKTMLVKAVAHHTNAAFISVVGSEFVQKYLGEGPRKVRDVFRLARE 240
Query: 304 NAPAIIFIDEIDAIAPKREEVVGEVEK---RVVSQLLTLMDGLKSRGKVIVIAATNRPDA 360
NAPAIIFIDE+D+IA KR + ++ RV+ +LL MDG V VI ATNR D
Sbjct: 241 NAPAIIFIDEVDSIATKRFDAQTGADREVQRVLIELLAQMDGFDQTTNVKVIMATNRWDT 300
Query: 361 LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDD 418
LDPA+ RPGR DR+IE PD++ ++ + Q+ T M + P+ + E + + L D
Sbjct: 301 LDPAILRPGRLDRKIEFPYPDRRQKRLVFQVCTSRMNLSPEVDLEEFVTRPERLTGAD 358
>gi|11418569 katanin p60 (ATPase-containing) subunit A 1 [Homo sapiens]
Length = 385
Score = 235 bits (594), Expect = 1e-60
Identities = 144/332 (43%), Positives = 201/332 (60%), Gaps = 20/332 (6%)
Query: 496 KEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDV 555
+E +P A T P + D EAL+ R+++ + PNV WDDI L +
Sbjct: 60 EEKNKSPAAVTEPETNKFDSTGYDKDLVEALE-------RDIISQNPNVRWDDIADLVEA 112
Query: 556 KQELREAVEWPLKYPKAFKRLGITPP-KGVLLYGPPGTGKTLLAKAVATESQANFIAIRG 614
K+ L+EAV P+ P+ FK GI P KGVL+ GPPGTGKTLLAKAVATE + F +
Sbjct: 113 KKLLKEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSS 170
Query: 615 PEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLT 674
+ SK+ GESEK +R +F AR SPA IFIDEID+I RGT+E + + R+ +LL
Sbjct: 171 STLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLV 230
Query: 675 EMDGLVENSG-------VVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKV 727
+MDG+ S V+V+AATN P +D AL R R ++ I +P P K R E+ ++
Sbjct: 231 QMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRI 288
Query: 728 HTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFL 787
R + LADDVDL +A EGY+GADI VCR+A++ A+RR + L+PEE+ S++ +
Sbjct: 289 SLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSKEEM 348
Query: 788 KSLIVTRKDFEVALKKVKPSVTKYMMEYYRQF 819
+ T +DFE+ALKKV SV+ +E Y ++
Sbjct: 349 -HMPTTMEDFEMALKKVSKSVSAADIERYEKW 379
Score = 147 bits (367), Expect = 5e-34
Identities = 94/256 (36%), Positives = 149/256 (57%), Gaps = 15/256 (5%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPP-KGVLLYGPPGTGKTLLAKA 265
P V ++DI L EA + ++E V LP+ PE F+ GI P KGVL+ GPPGTGKTLLAKA
Sbjct: 99 PNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKA 156
Query: 266 VANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR-EEV 324
VA E F ++ + SKY GESE+ +R +F+ A +PA IFIDEID+I +R
Sbjct: 157 VATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSE 216
Query: 325 VGEVEKRVVSQLLTLMDGLKSRGK-------VIVIAATNRPDALDPALRRPGRFDREIEV 377
E +RV ++LL MDG+ + V+V+AATN P +D ALRR R ++ I +
Sbjct: 217 EHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYI 274
Query: 378 GVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDD--RFDKEKIKKIIEKVSKA 435
+P +GR+E+L+I R + + D + ++ + ++ D ++ + + +
Sbjct: 275 PLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEG 334
Query: 436 KSEEEIKDILREDRNL 451
+ EEI+++ +E+ ++
Sbjct: 335 LTPEEIRNLSKEEMHM 350
>sp|P46465|PRSA_ORYSA 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) >gi|556560|dbj|BAA04614.1| (D17788)
rice homologue of Tat binding protein [Oryza sativa]
Length = 429
Score = 235 bits (593), Expect = 2e-60
Identities = 141/388 (36%), Positives = 224/388 (57%), Gaps = 14/388 (3%)
Query: 405 ETVIKALKELEKDDRFDKEKIKKI---IEKVSKAKSEEEIKDILREDRNLYIEVRTKLID 461
E +++A + L+ + R K+++++ +E + E + K L + + ++++
Sbjct: 28 ENIVRATRLLDNETRVLKDELQRTNLEVESYKEKIKENQEKIKLNKQLPYLVGNIVEILE 87
Query: 462 KLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLE--ELKVTK 519
++ AE + D R+ VVL+ ++ P + E L+ +L
Sbjct: 88 MNPEDEAEEDGANIDLDSQ---RKGKCVVLKTSTRQTIFLPVIGLVDPEKLKPGDLVGVN 144
Query: 520 ADFY---EALKMVEPSALREVLI-EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKR 575
D Y + L S ++ + + E P ++DIGGLE QEL EA+ P+ + F++
Sbjct: 145 KDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKDRFQK 204
Query: 576 LGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRK 635
LGI PPKGVLLYGPPGTGKTL+A+A A ++ A F+ + GP+++ ++G+ K +R+ F+
Sbjct: 205 LGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQL 264
Query: 636 ARQASPAIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLTEMDGLVENSGVVVIAATNR 693
A++ SP IIFIDEIDAI R +E G++ R + +LL ++DG + + VIAATNR
Sbjct: 265 AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNR 324
Query: 694 PDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGA 753
DILDPAL+R GR DR I P P E+AR I ++H+R M + DV+ +ELAR T+ + GA
Sbjct: 325 ADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGA 384
Query: 754 DIAAVCREAAMNALRRAVAKLSPEELEE 781
+ AVC EA M ALRR +++ E+ E
Sbjct: 385 QLKAVCVEAGMLALRRDATEVTHEDFNE 412
Score = 210 bits (530), Expect = 4e-53
Identities = 117/288 (40%), Positives = 178/288 (61%), Gaps = 20/288 (6%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + +++++T+P Y++ V+ A+EV E+ P Y DIGGL++ I+++
Sbjct: 141 VGVNKDSYLILDTLPS-----EYDSRVK----AMEVDEK--PTEDYNDIGGLEKQIQELV 189
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E + LP+ H + F++LGI PPKGVLLYGPPGTGKTL+A+A A + NA F+ + GP+++
Sbjct: 190 EAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 249
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
+ G+ + +R+ F+ A+E +P IIFIDEIDAI KR EV G+ E +R + +LL +DG
Sbjct: 250 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG 309
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
S ++ VIAATNR D LDPAL R GR DR+IE P ++ R ILQIH+R M + PD
Sbjct: 310 FSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDV 369
Query: 403 EKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRN 450
E + ++ D F+ ++K + + + ++ ED N
Sbjct: 370 NFEELARS------TDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFN 411
>sp|P54776|PRSA_LYCES 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) (MG(2+)-DEPENDENT ATPASE 1) (LEMA-1)
>gi|1362099|pir||S56672 probable 26S proteinase chain
MA-1 - tomato >gi|732815|emb|CAA52445.1| (X74426)
Mg-dependent ATPase 1 [Lycopersicon esculentum]
Length = 423
Score = 233 bits (589), Expect = 5e-60
Identities = 141/388 (36%), Positives = 224/388 (57%), Gaps = 14/388 (3%)
Query: 405 ETVIKALKELEKDDRFDKEKIKKI---IEKVSKAKSEEEIKDILREDRNLYIEVRTKLID 461
E +I+A + L+ + R KE++++ ++ + E + K L + + ++++
Sbjct: 22 EDIIRASRLLDNEIRIIKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILE 81
Query: 462 KLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLE--ELKVTK 519
+E AE + D R+ VVL+ ++ P + + L+ +L
Sbjct: 82 MNPEEEAEEDGANIDLDSQ---RKGKCVVLKTSTRQTIFLPVVGLVDPDNLKPGDLVGVN 138
Query: 520 ADFY---EALKMVEPSALREVLI-EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKR 575
D Y + L S ++ + + E P + DIGGLE QEL EA+ P+ + + F++
Sbjct: 139 KDSYLILDTLPSEYDSRVKAMEVDEKPTEDYHDIGGLEKQIQELVEAIVLPMTHQERFQK 198
Query: 576 LGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRK 635
LG+ PPKGVLLYGPPGTGKTL+A+A A ++ A F+ + GP+++ ++G+ K +R+ F+
Sbjct: 199 LGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQL 258
Query: 636 ARQASPAIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLTEMDGLVENSGVVVIAATNR 693
A++ SP IIFIDEIDAI R +E G++ R + +LL ++DG + + VIAATNR
Sbjct: 259 AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 318
Query: 694 PDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGA 753
DILDPAL+R GR DR I P P E+AR I ++H+R M + DV+ +ELAR T+ + GA
Sbjct: 319 ADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGA 378
Query: 754 DIAAVCREAAMNALRRAVAKLSPEELEE 781
+ AVC EA M ALRR +++ E+ E
Sbjct: 379 QLKAVCVEAGMLALRRDATEVTHEDFNE 406
Score = 211 bits (532), Expect = 2e-53
Identities = 117/288 (40%), Positives = 178/288 (61%), Gaps = 20/288 (6%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + +++++T+P Y++ V+ A+EV E+ P Y DIGGL++ I+++
Sbjct: 135 VGVNKDSYLILDTLPS-----EYDSRVK----AMEVDEK--PTEDYHDIGGLEKQIQELV 183
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E + LP+ H E F++LG+ PPKGVLLYGPPGTGKTL+A+A A + NA F+ + GP+++
Sbjct: 184 EAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
+ G+ + +R+ F+ A+E +P IIFIDEIDAI KR EV G+ E +R + +LL +DG
Sbjct: 244 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG 303
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
S ++ VIAATNR D LDPAL R GR DR+IE P ++ R ILQIH+R M + PD
Sbjct: 304 FSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDV 363
Query: 403 EKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRN 450
E + ++ D F+ ++K + + + ++ ED N
Sbjct: 364 NFEELARS------TDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFN 405
>sp|O32617|FTSH_HELFE CELL DIVISION PROTEIN FTSH HOMOLOG >gi|11278958|pir||T47267 cell
cycle protein [imported] - Helicobacter felis
>gi|2660540|emb|CAA05102.1| (AJ001932) cell cycle
protein [Helicobacter felis]
Length = 638
Score = 233 bits (588), Expect = 6e-60
Identities = 134/304 (44%), Positives = 189/304 (62%), Gaps = 17/304 (5%)
Query: 532 SALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPG 591
S+ + + E P V ++D+ G E+ K+E+ E V++ LKYP + LG PKGVLL GPPG
Sbjct: 161 SSKKLINAEKPKVRFNDMAGNEEAKEEVVEIVDF-LKYPDRYASLGAKIPKGVLLVGPPG 219
Query: 592 TGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDA 651
TGKTLLAKAVA E+ F ++ G + +VG R+R++F A++ +P+IIFIDEIDA
Sbjct: 220 TGKTLLAKAVAGEASVPFFSMGGSSFIEMFVGLGASRVRDLFDIAKKEAPSIIFIDEIDA 279
Query: 652 IAPAR---GTAEGEKVTDRIINQLLTEMDGL-VENSGVVVIAATNRPDILDPALLRPGRF 707
I +R G G ++ +NQLL EMDG EN+ V+V+AATNRP+ILDPALLRPGRF
Sbjct: 280 IGKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALLRPGRF 339
Query: 708 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNAL 767
DR +LV PD K R EI KVH + + LA+DVDL+E+A+ T G GAD+A + EAA+ A
Sbjct: 340 DRQVLVDKPDFKGRVEILKVHIKPVKLANDVDLQEIAKLTAGLAGADLANIINEAALLAG 399
Query: 768 RRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMV 827
R ++ + L+E E+ + L E +++ P K + + ES ++
Sbjct: 400 RNNQKEVKQQHLKEAVERGIAGL-------EKKSRRISPKEKKIV-----AYHESGHAVI 447
Query: 828 GEST 831
E T
Sbjct: 448 SEMT 451
Score = 178 bits (448), Expect = 2e-43
Identities = 98/208 (47%), Positives = 139/208 (66%), Gaps = 6/208 (2%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAV 266
P+V + D+ G +EA E++ E+V+ LK+P+ + LG + PKGVLL GPPGTGKTLLAKAV
Sbjct: 171 PKVRFNDMAGNEEAKEEVVEIVDF-LKYPDRYASLGAKIPKGVLLVGPPGTGKTLLAKAV 229
Query: 267 ANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREE--- 323
A EA+ F ++ G + + G R+R++F A++ AP+IIFIDEIDAI R
Sbjct: 230 AGEASVPFFSMGGSSFIEMFVGLGASRVRDLFDIAKKEAPSIIFIDEIDAIGKSRAAGGM 289
Query: 324 VVGEVEK-RVVSQLLTLMDGLKS-RGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPD 381
+ G E+ + ++QLL MDG S VIV+AATNRP+ LDPAL RPGRFDR++ V PD
Sbjct: 290 ISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALLRPGRFDRQVLVDKPD 349
Query: 382 KQGRKEILQIHTRGMPIEPDFEKETVIK 409
+GR EIL++H + + + D + + + K
Sbjct: 350 FKGRVEILKVHIKPVKLANDVDLQEIAK 377
>gb|AAF91244.1|AF227500_1 (AF227500) proteasome regulatory ATPase subunit 2 [Trypanosoma
brucei]
Length = 437
Score = 233 bits (588), Expect = 6e-60
Identities = 121/247 (48%), Positives = 163/247 (65%), Gaps = 2/247 (0%)
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
+ P + DIGGLED QE++EAVE+PL +P+ F +G+ PPKGV++YG PGTGKTLLAK
Sbjct: 175 KAPQETYADIGGLEDQIQEIKEAVEFPLSHPELFDEVGVKPPKGVIVYGVPGTGKTLLAK 234
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA 659
AVA ++ A F+ + G E++ K+ GE K +RE+FR A + SP+I+FIDEIDAI R
Sbjct: 235 AVANQTSATFLRVVGSELIQKYSGEGPKLVRELFRVAEENSPSIVFIDEIDAIGTKRYDT 294
Query: 660 E--GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 717
+ G K R + +LLT++DG + V VI ATNR + LDPAL+RPGR DR I P PD
Sbjct: 295 DSGGAKEVQRTMLELLTQLDGFDSCNDVKVIMATNRIETLDPALIRPGRIDRKIEFPFPD 354
Query: 718 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPE 777
EK + IF++HT M LA+DVDL E + +GADI A+C EA + ALR K+
Sbjct: 355 EKTKKMIFEIHTSRMSLAEDVDLSEFIPAKDEMSGADIQAICTEAGLLALRDRRMKVCQS 414
Query: 778 ELEEESE 784
+ + E
Sbjct: 415 DFVKGKE 421
Score = 219 bits (552), Expect = 1e-55
Identities = 113/227 (49%), Positives = 155/227 (67%), Gaps = 5/227 (2%)
Query: 196 PQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPP 255
P ++ +K P+ TY DIGGL++ I++I+E VE PL HPELF+ +G++PPKGV++YG P
Sbjct: 166 PLVSVMKVDKAPQETYADIGGLEDQIQEIKEAVEFPLSHPELFDEVGVKPPKGVIVYGVP 225
Query: 256 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEID 315
GTGKTLLAKAVAN+ +A F+ + G E++ KY GE + +RE+F+ AEEN+P+I+FIDEID
Sbjct: 226 GTGKTLLAKAVANQTSATFLRVVGSELIQKYSGEGPKLVRELFRVAEENSPSIVFIDEID 285
Query: 316 AIAPKREEV----VGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRF 371
AI KR + EV+ R + +LLT +DG S V VI ATNR + LDPAL RPGR
Sbjct: 286 AIGTKRYDTDSGGAKEVQ-RTMLELLTQLDGFDSCNDVKVIMATNRIETLDPALIRPGRI 344
Query: 372 DREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDD 418
DR+IE PD++ +K I +IHT M + D + I A E+ D
Sbjct: 345 DRKIEFPFPDEKTKKMIFEIHTSRMSLAEDVDLSEFIPAKDEMSGAD 391
>gi|6679503 proteasome (prosome, macropain) 26S subunit, ATPase 3; Tat binding
protein 1 [Mus musculus] >gi|3510277|dbj|BAA32559.1|
(D49686) Tat binding protein-1 [Mus musculus]
>gi|10697242|dbj|BAB16347.1| (AB040858) proteasomal
ATPase [Mus musculus]
Length = 442
Score = 233 bits (588), Expect = 6e-60
Identities = 150/404 (37%), Positives = 228/404 (56%), Gaps = 26/404 (6%)
Query: 382 KQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKS---- 437
K +EI+Q TR + E K V++ EL+ K+KIK+ EK+ K+
Sbjct: 38 KMSTEEIVQ-RTRLLDSEIKIMKSEVLRVTHELQAM----KDKIKENSEKIKVNKTLPYL 92
Query: 438 EEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKE 497
+ ++L D N E + +L G A + R+ + + L+
Sbjct: 93 VSNVIELLDVDPNDQEEDGANI------DLDSQRKGKC-AVIKTSTRQTYFLPVIGLVDA 145
Query: 498 GKINP-EAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVK 556
K+ P + + ++ L+ D+ +K +E E P + DIGGL+
Sbjct: 146 EKLKPGDLVGVNKDSYLILETLPTDYDSRVKAMEVD-------ERPTEQYSDIGGLDKQI 198
Query: 557 QELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPE 616
QEL EA+ P+ + + F+ LGI PPKGVL+YGPPGTGKTLLA+A A +++A F+ + GP+
Sbjct: 199 QELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQ 258
Query: 617 VLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLT 674
++ ++G+ K +R+ F A++ +P+IIFIDE+DAI R +E G++ R + +LL
Sbjct: 259 LVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 318
Query: 675 EMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPL 734
++DG N+ V VIAATNR DILDPALLR GR DR I P P+E+AR I ++H+R M +
Sbjct: 319 QLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNV 378
Query: 735 ADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEE 778
+ DV+ +ELAR T+ + GA AVC EA M ALRR +L+ E+
Sbjct: 379 SPDVNYEELARCTDDFNGAQSKAVCVEAGMIALRRGATELTHED 422
Score = 203 bits (512), Expect = 5e-51
Identities = 109/247 (44%), Positives = 159/247 (64%), Gaps = 14/247 (5%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + ++++ T+P T+ + +A+EV E P Y DIGGL + I+++
Sbjct: 154 VGVNKDSYLILETLP---------TDYDSRVKAMEVDER--PTEQYSDIGGLDKQIQELV 202
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E + LP+ H E FE LGI+PPKGVL+YGPPGTGKTLLA+A A + A F+ + GP+++
Sbjct: 203 EAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQM 262
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
+ G+ + +R+ F A+E AP+IIFIDE+DAI KR E G+ E +R + +LL +DG
Sbjct: 263 FIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 322
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
+ +V VIAATNR D LDPAL R GR DR+IE +P+++ R I+QIH+R M + PD
Sbjct: 323 FQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDV 382
Query: 403 EKETVIK 409
E + +
Sbjct: 383 NYEELAR 389
>gi|11437005 proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Homo
sapiens]
Length = 423
Score = 233 bits (588), Expect = 6e-60
Identities = 150/407 (36%), Positives = 229/407 (55%), Gaps = 26/407 (6%)
Query: 382 KQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKS---- 437
K +EI+Q TR + E K V++ EL+ K+KIK+ EK+ K+
Sbjct: 19 KMSTEEIIQ-RTRLLDSEIKIMKSEVLRVTHELQAM----KDKIKENSEKIKVNKTLPYL 73
Query: 438 EEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKE 497
+ ++L D N E + +L G A + R+ + + L+
Sbjct: 74 VSNVIELLDVDPNDQEEDGANI------DLDSQRKGKC-AVIKTSTRQTYFLPVIGLVDA 126
Query: 498 GKINP-EAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVK 556
K+ P + + ++ L+ ++ +K +E E P + DIGGL+
Sbjct: 127 EKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVD-------ERPTEQYSDIGGLDKQI 179
Query: 557 QELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPE 616
QEL EA+ P+ + + F+ LGI PPKGVL+YGPPGTGKTLLA+A A +++A F+ + GP+
Sbjct: 180 QELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQ 239
Query: 617 VLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLT 674
++ ++G+ K +R+ F A++ +P+IIFIDE+DAI R +E G++ R + +LL
Sbjct: 240 LVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 299
Query: 675 EMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPL 734
++DG N+ V VIAATNR DILDPALLR GR DR I P P+E+AR I ++H+R M +
Sbjct: 300 QLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNV 359
Query: 735 ADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
+ DV+ +ELAR T+ + GA AVC EA M ALRR +L+ E+ E
Sbjct: 360 SPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYME 406
Score = 205 bits (515), Expect = 2e-51
Identities = 110/247 (44%), Positives = 159/247 (63%), Gaps = 14/247 (5%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + ++++ T+P TE + +A+EV E P Y DIGGL + I+++
Sbjct: 135 VGVNKDSYLILETLP---------TEYDSRVKAMEVDER--PTEQYSDIGGLDKQIQELV 183
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E + LP+ H E FE LGI+PPKGVL+YGPPGTGKTLLA+A A + A F+ + GP+++
Sbjct: 184 EAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQM 243
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
+ G+ + +R+ F A+E AP+IIFIDE+DAI KR E G+ E +R + +LL +DG
Sbjct: 244 FIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 303
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
+ +V VIAATNR D LDPAL R GR DR+IE +P+++ R I+QIH+R M + PD
Sbjct: 304 FQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDV 363
Query: 403 EKETVIK 409
E + +
Sbjct: 364 NYEELAR 370
>sp|Q25544|PRS8_NAEFO 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG) >gi|1353667|gb|AAB01762.1| (U41812) Tat-binding
protein homolog [Naegleria fowleri]
Length = 414
Score = 233 bits (588), Expect = 6e-60
Identities = 136/374 (36%), Positives = 220/374 (58%), Gaps = 15/374 (4%)
Query: 425 IKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAR 484
I KI EK + + E L+ RN + R + + + L +L E VG + + +
Sbjct: 32 IAKIQEKEIVLRDKIENLRRLQAQRN-ELNGRVRSLKEELQQLQE-PGSHVGEVVKVMGK 89
Query: 485 EAAMVVLRRLIKEGK--INPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLI--- 539
+ ++ ++ +EGK ++ + +++ ++V + AL + P+ + ++
Sbjct: 90 KKVLI---KISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLMK 146
Query: 540 --EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLL 597
+VP+ ++ +GGL++ +E++E +E P+K+P+ F+ LGI PKGV++YGPPGTGKTLL
Sbjct: 147 VEKVPDATYEMVGGLDEQIKEIKEVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTLL 206
Query: 598 AKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR- 656
A+AVA + FI + G E++ K++GE K +RE+F AR+ +P+IIF+DEID+I R
Sbjct: 207 ARAVAHHTDCTFIRVSGSELVQKYIGEGSKMVRELFVMAREHAPSIIFMDEIDSIGSTRT 266
Query: 657 --GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVP 714
G G+ R + +LL ++DG + +I ATNR DILDPALLRPGR DR I P
Sbjct: 267 EGGKGGGDSEVQRTMLELLNQLDGFESTQNIKIIMATNRIDILDPALLRPGRIDRKIEFP 326
Query: 715 APDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKL 774
P+E AR +I K+H+R M L ++L+++A G +GA+I A C EA M ALR +
Sbjct: 327 NPNELARLDILKIHSRRMNLTRGINLRKIASMLGGASGAEIKATCTEAGMFALRERRVHV 386
Query: 775 SPEELEEESEKFLK 788
+ E+LE K +K
Sbjct: 387 TQEDLEMAVAKVMK 400
Score = 210 bits (530), Expect = 4e-53
Identities = 107/213 (50%), Positives = 152/213 (71%), Gaps = 9/213 (4%)
Query: 193 EVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPK 247
++LP ++ ++ EK+P+ TYE +GGL E I++I+E++ELP+KHPELFE LGI PK
Sbjct: 132 KILPNKIDPLVSLMKVEKVPDATYEMVGGLDEQIKEIKEVIELPIKHPELFESLGIAQPK 191
Query: 248 GVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPA 307
GV++YGPPGTGKTLLA+AVA+ + FI ++G E++ KY GE + +RE+F A E+AP+
Sbjct: 192 GVIMYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSKMVRELFVMAREHAPS 251
Query: 308 IIFIDEIDAIAPKREE---VVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDP 363
IIF+DEID+I R E G+ E +R + +LL +DG +S + +I ATNR D LDP
Sbjct: 252 IIFMDEIDSIGSTRTEGGKGGGDSEVQRTMLELLNQLDGFESTQNIKIIMATNRIDILDP 311
Query: 364 ALRRPGRFDREIEVGVPDKQGRKEILQIHTRGM 396
AL RPGR DR+IE P++ R +IL+IH+R M
Sbjct: 312 ALLRPGRIDRKIEFPNPNELARLDILKIHSRRM 344
>gb|AAB70882.1| (U77918) spermatogenic cell/sperm-associated Tat-binding protein
homolog Sata [Rattus norvegicus]
Length = 442
Score = 233 bits (588), Expect = 6e-60
Identities = 125/279 (44%), Positives = 176/279 (62%), Gaps = 20/279 (7%)
Query: 505 ETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVE 564
ET+P E +K + D E P + DIGGL+ QEL EA+
Sbjct: 165 ETLPTEYDSRVKAMEVD------------------ERPTEQYSDIGGLDKQIQELVEAIV 206
Query: 565 WPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGE 624
P+ + + F+ LGI PPKGVL+YGPPGTGKTLLA+A A +++A F+ + GP+++ ++G+
Sbjct: 207 LPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 266
Query: 625 SEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLTEMDGLVEN 682
K +R+ F A++ +P+IIFIDE+DAI R +E G++ R + +LL +MDG N
Sbjct: 267 GAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQMDGFQPN 326
Query: 683 SGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKE 742
+ V VIAATNR DILDPALLR GR DR I P P+E+AR I ++H+R M ++ DV+ +E
Sbjct: 327 TQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEE 386
Query: 743 LARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
LAR T+ + GA AVC EA M ALRR +L+ E+ E
Sbjct: 387 LARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYME 425
Score = 206 bits (518), Expect = 1e-51
Identities = 111/247 (44%), Positives = 159/247 (63%), Gaps = 14/247 (5%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + ++++ T+P TE + +A+EV E P Y DIGGL + I+++
Sbjct: 154 VGVNKDSYLILETLP---------TEYDSRVKAMEVDER--PTEQYSDIGGLDKQIQELV 202
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E + LP+ H E FE LGI+PPKGVL+YGPPGTGKTLLA+A A + A F+ + GP+++
Sbjct: 203 EAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQM 262
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
+ G+ + +R+ F A+E AP+IIFIDE+DAI KR E G+ E +R + +LL MDG
Sbjct: 263 FIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQMDG 322
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
+ +V VIAATNR D LDPAL R GR DR+IE +P+++ R I+QIH+R M + PD
Sbjct: 323 FQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDV 382
Query: 403 EKETVIK 409
E + +
Sbjct: 383 NYEELAR 389
>sp|Q63569|PRSA_RAT 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 1) (TBP-1)
(SPERMATOGENIC CELL/SPERM-ASSOCIATED TAT-BINDING PROTEIN
HOMOLOG SATA) >gi|1395184|dbj|BAA11939.1| (D83522)
proteasomal ATPase (rat TBP1) [Rattus norvegicus]
Length = 439
Score = 233 bits (587), Expect = 8e-60
Identities = 150/407 (36%), Positives = 229/407 (55%), Gaps = 26/407 (6%)
Query: 382 KQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKS---- 437
K +EI+Q TR + E K V++ EL+ K+KIK+ EK+ K+
Sbjct: 35 KMSTEEIVQ-RTRLLDSEIKIMKSEVLRVTHELQAM----KDKIKENSEKIKVNKTLPYL 89
Query: 438 EEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKE 497
+ ++L D N E + +L G A + R+ + + L+
Sbjct: 90 VSNVIELLDVDPNDQEEDGANI------DLDSQRKGKC-AVIKTSTRQTYFLPVIGLVDA 142
Query: 498 GKINP-EAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVK 556
K+ P + + ++ L+ ++ +K +E E P + DIGGL+
Sbjct: 143 EKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVD-------ERPTEQYSDIGGLDKQI 195
Query: 557 QELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPE 616
QEL EA+ P+ + + F+ LGI PPKGVL+YGPPGTGKTLLA+A A +++A F+ + GP+
Sbjct: 196 QELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQ 255
Query: 617 VLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLT 674
++ ++G+ K +R+ F A++ +P+IIFIDE+DAI R +E G++ R + +LL
Sbjct: 256 LVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 315
Query: 675 EMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPL 734
++DG N+ V VIAATNR DILDPALLR GR DR I P P+E+AR I ++H+R M +
Sbjct: 316 QLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNV 375
Query: 735 ADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
+ DV+ +ELAR T+ + GA AVC EA M ALRR +L+ E+ E
Sbjct: 376 SPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYME 422
Score = 205 bits (515), Expect = 2e-51
Identities = 110/247 (44%), Positives = 159/247 (63%), Gaps = 14/247 (5%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + ++++ T+P TE + +A+EV E P Y DIGGL + I+++
Sbjct: 151 VGVNKDSYLILETLP---------TEYDSRVKAMEVDER--PTEQYSDIGGLDKQIQELV 199
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E + LP+ H E FE LGI+PPKGVL+YGPPGTGKTLLA+A A + A F+ + GP+++
Sbjct: 200 EAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQM 259
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
+ G+ + +R+ F A+E AP+IIFIDE+DAI KR E G+ E +R + +LL +DG
Sbjct: 260 FIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 319
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
+ +V VIAATNR D LDPAL R GR DR+IE +P+++ R I+QIH+R M + PD
Sbjct: 320 FQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDV 379
Query: 403 EKETVIK 409
E + +
Sbjct: 380 NYEELAR 386
>sp|P46502|PRS6_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT 6B
>gi|529215|gb|AAA20608.1| (U12965) similar to
CDC48/PAS1/SEC18 family; highest similarity to 26S
protease subunit 4, member of eukaryotic ATPase family
[Caenorhabditis elegans]
Length = 414
Score = 233 bits (587), Expect = 8e-60
Identities = 139/382 (36%), Positives = 214/382 (55%), Gaps = 31/382 (8%)
Query: 427 KIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREA 486
+++E K ++ K++L + L+ E + H VG+ +
Sbjct: 51 QVMEDYIKLETRNLEKELLHAQEEVKRIQSVPLVIGQFLEAVDQNHAIVGSTTGSNYYVR 110
Query: 487 AMVVL-RRLIKEG-------KINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVL 538
+ +L R L+K G N + +P E +++ + D
Sbjct: 111 VLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPD----------------- 153
Query: 539 IEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLA 598
E P++ + DIGGL+ KQE+REAVE PL + + ++++GI PP+GVL+YGPPG GKT+LA
Sbjct: 154 -EKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLA 212
Query: 599 KAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGT 658
KAVA + A+FI + G E + K++GE + +R++FR A++ SP+IIFIDEIDAIA R
Sbjct: 213 KAVAANTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEIDAIATKRFD 272
Query: 659 AE--GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAP 716
A+ ++ RI+ +LL +MDG +++ V VI ATNR D LDPALLRPGR DR I P P
Sbjct: 273 AQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLP 332
Query: 717 DEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSP 776
D + + +F M L+DDVDL++ R + +GADI ++C+EA M A+R +
Sbjct: 333 DRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAGMQAVRENRYVVLT 392
Query: 777 EELEEESEKFLKSLIVTRKDFE 798
++LE+ + +K DFE
Sbjct: 393 KDLEKAYKNVVKK---DTNDFE 411
Score = 200 bits (503), Expect = 6e-50
Identities = 110/268 (41%), Positives = 160/268 (59%), Gaps = 14/268 (5%)
Query: 189 NTEVEVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGI 243
N V+VLP + +R ++ P+++Y DIGGL +++RE VELPL H EL++++GI
Sbjct: 133 NALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGI 192
Query: 244 EPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEE 303
+PP+GVL+YGPPG GKT+LAKAVA A FI + G E + KY GE +R++F+ A+E
Sbjct: 193 DPPRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE 252
Query: 304 NAPAIIFIDEIDAIAPKREEVVGEVEK---RVVSQLLTLMDGLKSRGKVIVIAATNRPDA 360
N+P+IIFIDEIDAIA KR + ++ R++ +LL MDG V VI ATNR D
Sbjct: 253 NSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRQDT 312
Query: 361 LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRF 420
LDPAL RPGR DR+IE +PD++ ++ + M + D + E + + D+
Sbjct: 313 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWV------ARPDKI 366
Query: 421 DKEKIKKIIEKVSKAKSEEEIKDILRED 448
I I ++ E +L +D
Sbjct: 367 SGADINSICQEAGMQAVRENRYVVLTKD 394
>gb|AAD24384.1|AC006081_20 (AC006081) 26S proteasome subunit 4 [Arabidopsis thaliana]
Length = 443
Score = 233 bits (587), Expect = 8e-60
Identities = 139/366 (37%), Positives = 211/366 (56%), Gaps = 18/366 (4%)
Query: 426 KKIIEKVSKAKSEEEIKDILREDRNLYIEVR-TKLIDKLLDELAEVTHGFVGADLAALAR 484
++ + + K +EE + EDR+ ++R T + L+EL + H V + +
Sbjct: 79 EEFVANQERLKPQEEKAE---EDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGP--- 132
Query: 485 EAAMVVLRRLIKEGKINPEAETIPR-EVLEELKVTKADFYEALKMVEPSALREVLIEVPN 543
V + + + ++ P + +VL + + + + V+P + + P
Sbjct: 133 -EYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDE-------VDPMVSVMKVEKAPL 184
Query: 544 VHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
+ DIGGLE QE++EAVE PL +P+ ++ +GI PPKGV+LYG PGTGKTLLAKAVA
Sbjct: 185 ESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVAN 244
Query: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE--G 661
+ A F+ + G E++ K++G+ K +RE+FR A SP+I+FIDEIDA+ R A G
Sbjct: 245 STSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGG 304
Query: 662 EKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 721
E+ R + +LL ++DG V VI ATNR + LDPALLRPGR DR I P PD K R
Sbjct: 305 EREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTR 364
Query: 722 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
IF++HT M LA+DV+L+E + ++GADI A+C EA + ALR K++ + ++
Sbjct: 365 RRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKK 424
Query: 782 ESEKFL 787
EK +
Sbjct: 425 AKEKVM 430
Score = 219 bits (551), Expect = 1e-55
Identities = 115/229 (50%), Positives = 155/229 (67%), Gaps = 3/229 (1%)
Query: 193 EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLY 252
EV P ++ EK P +Y DIGGL+ I++I+E VELPL HPEL+E +GI+PPKGV+LY
Sbjct: 169 EVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILY 228
Query: 253 GPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFID 312
G PGTGKTLLAKAVAN +A F+ + G E++ KY G+ + +RE+F+ A++ +P+I+FID
Sbjct: 229 GEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFID 288
Query: 313 EIDAIAPKREEV--VGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPG 369
EIDA+ KR + GE E +R + +LL +DG SRG V VI ATNR ++LDPAL RPG
Sbjct: 289 EIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPG 348
Query: 370 RFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDD 418
R DR+IE +PD + R+ I QIHT M + D E + E D
Sbjct: 349 RIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGAD 397
>sp|O04019|PRSA_ARATH 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) >gi|2342675|gb|AAB70397.1| (AC000106)
Similar to probable Mg-dependent ATPase (pir|S56671).
ESTs gb|T46782,gb|AA04798 come from this gene.
[Arabidopsis thaliana]
Length = 419
Score = 232 bits (586), Expect = 1e-59
Identities = 143/382 (37%), Positives = 222/382 (57%), Gaps = 18/382 (4%)
Query: 408 IKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDEL 467
I+ LKE + D E +K+ I++ ++E+IK L + + ++++ ++
Sbjct: 31 IRILKEESQRTNLDLESVKEKIKE-----NQEKIK--LNKQLPYLVGNIVEILEMSPEDD 83
Query: 468 AEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLE--ELKVTKADFY-- 523
AE + D R+ VVL+ ++ P + + L+ +L D Y
Sbjct: 84 AEEDGANIDLDSQ---RKGKCVVLKTSTRQTIFLPVVGLVDPDTLKPGDLVGVNKDSYLI 140
Query: 524 -EALKMVEPSALREVLI-EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPP 581
+ L S ++ + + E P ++DIGGLE QEL EA+ P+ + + F++LGI PP
Sbjct: 141 LDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPP 200
Query: 582 KGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASP 641
KGVLLYGPPGTGKTL+A+A A ++ A F+ + GP+++ ++G+ K +R+ F A++ SP
Sbjct: 201 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSP 260
Query: 642 AIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDP 699
IIFIDEIDAI R +E G++ R + +LL ++DG + + VIAATNR DILDP
Sbjct: 261 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDP 320
Query: 700 ALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVC 759
AL+R GR DR I P P E+AR I ++H+R M + DV+ +ELAR T+ + GA + AVC
Sbjct: 321 ALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLKAVC 380
Query: 760 REAAMNALRRAVAKLSPEELEE 781
EA M ALRR +++ E+ E
Sbjct: 381 VEAGMLALRRDATEVNHEDFNE 402
Score = 207 bits (522), Expect = 3e-52
Identities = 118/288 (40%), Positives = 176/288 (60%), Gaps = 20/288 (6%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + +++++T+P Y++ V+ A+EV E+ P Y DIGGL++ I+++
Sbjct: 131 VGVNKDSYLILDTLPS-----EYDSRVK----AMEVDEK--PTEDYNDIGGLEKQIQELV 179
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E + LP+ H E FE+LGI PPKGVLLYGPPGTGKTL+A+A A + NA F+ + GP+++
Sbjct: 180 EAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 239
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
+ G+ + +R+ F A+E +P IIFIDEIDAI KR EV G+ E +R + +LL +DG
Sbjct: 240 FIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG 299
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
S ++ VIAATNR D LDPAL R GR DR+IE P ++ R ILQIH+R M + D
Sbjct: 300 FSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADV 359
Query: 403 EKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRN 450
E + ++ D F+ ++K + + + ++ ED N
Sbjct: 360 NFEELARS------TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 401
>emb|CAA47023.1| (X66400) sug1 [Saccharomyces cerevisiae] >gi|1195528|gb|AAB35417.1|
26S protease subunit S8=SUG1 homolog [human,
erythrocytes, Peptide, 405 aa]
Length = 405
Score = 232 bits (585), Expect = 1e-59
Identities = 144/395 (36%), Positives = 224/395 (56%), Gaps = 46/395 (11%)
Query: 426 KKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALARE 485
+KI E K +S+ E L RN + + D+L L + +VG + ++ +
Sbjct: 25 QKIQETELKIRSKTENGRRLEAQRNALNDKVRFIKDEL--RLLQEPGSYVGEVIKIVSDK 82
Query: 486 AAMVVLRRLIKEGKINPEAETIPREVLEELKVT----------KADFYEALKMVEPSA-- 533
+V K+ PE + I +V +++ V ++D Y K++E A
Sbjct: 83 KVLV---------KVQPEGKYIV-DVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADP 132
Query: 534 -LREVLIE-VPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPG 591
+ +++E VP+ +D +GGL +E++E +E P+K+P+ F+ LGI PKGV+LYGPPG
Sbjct: 133 LVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPG 192
Query: 592 TGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDA 651
TGKTLLA+AVA + FI + G E++ K++GE + +RE+F AR+ +P+IIF+DEID+
Sbjct: 193 TGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 252
Query: 652 IAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDR 709
I R G+ G+ R + +LL ++DG + + +I ATNR DILDPALLRPGR DR
Sbjct: 253 IGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDR 312
Query: 710 LILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRR 769
I P P AR EI ++H+R M L ++L+++A + G +GAD+ VC EA M ALR
Sbjct: 313 KIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
Query: 770 AVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKV 804
+ + VT++DFE+A+ KV
Sbjct: 373 ------------------RRIHVTQEDFELAVGKV 389
Score = 206 bits (520), Expect = 6e-52
Identities = 103/196 (52%), Positives = 140/196 (70%), Gaps = 3/196 (1%)
Query: 204 EKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLA 263
EK+P+ TY+ +GGL + I++I+E++ELP+KHPELFE LGI PKGV+LYGPPGTGKTLLA
Sbjct: 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199
Query: 264 KAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREE 323
+AVA+ + FI ++G E++ KY GE +RE+F A E+AP+IIF+DEID+I R E
Sbjct: 200 RAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVE 259
Query: 324 VVGEVE---KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVP 380
G + +R + +LL +DG ++ + +I ATNR D LDPAL RPGR DR+IE P
Sbjct: 260 GSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPP 319
Query: 381 DKQGRKEILQIHTRGM 396
R EIL+IH+R M
Sbjct: 320 SVAARAEILRIHSRKM 335
>gi|6321390 ATPase; Rpt6p [Saccharomyces cerevisiae]
>gi|1709801|sp|Q01939|PRS8_YEAST 26S PROTEASE REGULATORY
SUBUNIT 8 HOMOLOG (SUG1 PROTEIN) (CIM3 PROTEIN)
(TAT-BINDING PROTEIN TBY1) >gi|2133183|pir||S64052 26S
proteasome regulatory particle chain RPT6 - yeast
(Saccharomyces cerevisiae) >gi|172878|gb|AAA35138.1|
(L01626) Tat-binding protein [Saccharomyces cerevisiae]
>gi|1322539|emb|CAA96750.1| (Z72570) ORF YGL048c
[Saccharomyces cerevisiae]
Length = 405
Score = 232 bits (585), Expect = 1e-59
Identities = 144/395 (36%), Positives = 224/395 (56%), Gaps = 46/395 (11%)
Query: 426 KKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALARE 485
+KI E K +S+ E L RN + + D+L L + +VG + ++ +
Sbjct: 25 QKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDEL--RLLQEPGSYVGEVIKIVSDK 82
Query: 486 AAMVVLRRLIKEGKINPEAETIPREVLEELKVT----------KADFYEALKMVEPSA-- 533
+V K+ PE + I +V +++ V ++D Y K++E A
Sbjct: 83 KVLV---------KVQPEGKYIV-DVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADP 132
Query: 534 -LREVLIE-VPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPG 591
+ +++E VP+ +D +GGL +E++E +E P+K+P+ F+ LGI PKGV+LYGPPG
Sbjct: 133 LVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPG 192
Query: 592 TGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDA 651
TGKTLLA+AVA + FI + G E++ K++GE + +RE+F AR+ +P+IIF+DEID+
Sbjct: 193 TGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 252
Query: 652 IAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDR 709
I R G+ G+ R + +LL ++DG + + +I ATNR DILDPALLRPGR DR
Sbjct: 253 IGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDR 312
Query: 710 LILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRR 769
I P P AR EI ++H+R M L ++L+++A + G +GAD+ VC EA M ALR
Sbjct: 313 KIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
Query: 770 AVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKV 804
+ + VT++DFE+A+ KV
Sbjct: 373 ------------------RRIHVTQEDFELAVGKV 389
Score = 206 bits (520), Expect = 6e-52
Identities = 103/196 (52%), Positives = 140/196 (70%), Gaps = 3/196 (1%)
Query: 204 EKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLA 263
EK+P+ TY+ +GGL + I++I+E++ELP+KHPELFE LGI PKGV+LYGPPGTGKTLLA
Sbjct: 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199
Query: 264 KAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREE 323
+AVA+ + FI ++G E++ KY GE +RE+F A E+AP+IIF+DEID+I R E
Sbjct: 200 RAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVE 259
Query: 324 VVGEVE---KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVP 380
G + +R + +LL +DG ++ + +I ATNR D LDPAL RPGR DR+IE P
Sbjct: 260 GSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPP 319
Query: 381 DKQGRKEILQIHTRGM 396
R EIL+IH+R M
Sbjct: 320 SVAARAEILRIHSRKM 335
>prf||1813279A SUG1 gene [Saccharomyces cerevisiae]
Length = 400
Score = 232 bits (585), Expect = 1e-59
Identities = 144/395 (36%), Positives = 224/395 (56%), Gaps = 46/395 (11%)
Query: 426 KKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALARE 485
+KI E K +S+ E L RN + + D+L L + +VG + ++ +
Sbjct: 25 QKIQETELKIRSKTENGRRLEAQRNALNDKVRFIKDEL--RLLQEPGSYVGEVIKIVSDK 82
Query: 486 AAMVVLRRLIKEGKINPEAETIPREVLEELKVT----------KADFYEALKMVEPSA-- 533
+V K+ PE + I +V +++ V ++D Y K++E A
Sbjct: 83 KVLV---------KVQPEGKYIV-DVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADP 132
Query: 534 -LREVLIE-VPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPG 591
+ +++E VP+ +D +GGL +E++E +E P+K+P+ F+ LGI PKGV+LYGPPG
Sbjct: 133 LVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPG 192
Query: 592 TGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDA 651
TGKTLLA+AVA + FI + G E++ K++GE + +RE+F AR+ +P+IIF+DEID+
Sbjct: 193 TGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 252
Query: 652 IAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDR 709
I R G+ G+ R + +LL ++DG + + +I ATNR DILDPALLRPGR DR
Sbjct: 253 IGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDR 312
Query: 710 LILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRR 769
I P P AR EI ++H+R M L ++L+++A + G +GAD+ VC EA M ALR
Sbjct: 313 KIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
Query: 770 AVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKV 804
+ + VT++DFE+A+ KV
Sbjct: 373 ------------------RRIHVTQEDFELAVGKV 389
Score = 206 bits (520), Expect = 6e-52
Identities = 103/196 (52%), Positives = 140/196 (70%), Gaps = 3/196 (1%)
Query: 204 EKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLA 263
EK+P+ TY+ +GGL + I++I+E++ELP+KHPELFE LGI PKGV+LYGPPGTGKTLLA
Sbjct: 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199
Query: 264 KAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREE 323
+AVA+ + FI ++G E++ KY GE +RE+F A E+AP+IIF+DEID+I R E
Sbjct: 200 RAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVE 259
Query: 324 VVGEVE---KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVP 380
G + +R + +LL +DG ++ + +I ATNR D LDPAL RPGR DR+IE P
Sbjct: 260 GSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPP 319
Query: 381 DKQGRKEILQIHTRGM 396
R EIL+IH+R M
Sbjct: 320 SVAARAEILRIHSRKM 335
>gb|AAC44563.1| (U59452) HpFtsH [Helicobacter pylori]
Length = 632
Score = 232 bits (585), Expect = 1e-59
Identities = 132/304 (43%), Positives = 189/304 (61%), Gaps = 17/304 (5%)
Query: 532 SALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPG 591
SA + + E PNV ++D+ G E+ K+E+ E V++ LKYP+ + LG PKGVLL GPPG
Sbjct: 155 SAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPG 213
Query: 592 TGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDA 651
TGKTLLAKAVA E+ F ++ G + +VG R+R++F A++ +P+IIFIDEIDA
Sbjct: 214 TGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDA 273
Query: 652 IAPAR---GTAEGEKVTDRIINQLLTEMDGL-VENSGVVVIAATNRPDILDPALLRPGRF 707
I +R G G ++ +NQLL EMDG EN+ V+V+AATNRP+ILDPAL+RPGRF
Sbjct: 274 IPKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRF 333
Query: 708 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNAL 767
DR +LV PD R EI KV +G+ LA+DV+ +E+A+ T G GAD+A + EAA+ A
Sbjct: 334 DRQVLVDKPDFNGRVEILKVDIKGVKLANDVNFEEVAKLTAGLAGADLANIINEAALLAG 393
Query: 768 RRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMV 827
R ++ + L+E E+ + L E +++ P K + + ES ++
Sbjct: 394 RNNQKEVKQQHLKEAVERGIAGL-------EKKSRRISPKEKKIV-----AYHESGHAVI 441
Query: 828 GEST 831
E T
Sbjct: 442 SEMT 445
Score = 181 bits (455), Expect = 2e-44
Identities = 101/209 (48%), Positives = 137/209 (65%), Gaps = 8/209 (3%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAV 266
P V + D+ G +EA E++ E+V+ LK+PE + LG + PKGVLL GPPGTGKTLLAKAV
Sbjct: 165 PNVRFNDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 223
Query: 267 ANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVG 326
A EA+ F ++ G + + G R+R++F+ A++ AP+IIFIDEIDAI PK G
Sbjct: 224 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAI-PKSRAAGG 282
Query: 327 EV-----EKRVVSQLLTLMDGLKS-RGKVIVIAATNRPDALDPALRRPGRFDREIEVGVP 380
+ ++ ++QLL MDG S VIV+AATNRP+ LDPAL RPGRFDR++ V P
Sbjct: 283 MISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342
Query: 381 DKQGRKEILQIHTRGMPIEPDFEKETVIK 409
D GR EIL++ +G+ + D E V K
Sbjct: 343 DFNGRVEILKVDIKGVKLANDVNFEEVAK 371
>pir||T08959 proteinase homolog F19B15.70 - Arabidopsis thaliana
>gi|4972050|emb|CAB43918.1| (AL078470) 26S proteasome
subunit 4-like protein [Arabidopsis thaliana]
>gi|7269802|emb|CAB79662.1| (AL161574) 26S proteasome
subunit 4-like protein [Arabidopsis thaliana]
Length = 443
Score = 232 bits (585), Expect = 1e-59
Identities = 138/366 (37%), Positives = 211/366 (56%), Gaps = 18/366 (4%)
Query: 426 KKIIEKVSKAKSEEEIKDILREDRNLYIEVR-TKLIDKLLDELAEVTHGFVGADLAALAR 484
++ + + K +EE + EDR+ ++R T + L+EL + H V + +
Sbjct: 79 EEFVANQERLKPQEEKAE---EDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGP--- 132
Query: 485 EAAMVVLRRLIKEGKINPEAETIPR-EVLEELKVTKADFYEALKMVEPSALREVLIEVPN 543
V + + + ++ P + +VL + + + + V+P + + P
Sbjct: 133 -EYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDE-------VDPMVSVMKVEKAPL 184
Query: 544 VHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
+ DIGGLE QE++EAVE PL +P+ ++ +GI PPKGV+LYG PGTGKTLLAKAVA
Sbjct: 185 ESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVAN 244
Query: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE--G 661
+ A F+ + G E++ K++G+ K +RE+FR A SP+I+FIDEIDA+ R A G
Sbjct: 245 STSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGG 304
Query: 662 EKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 721
E+ R + +LL ++DG V VI ATNR + LDPALLRPGR DR I P PD K R
Sbjct: 305 EREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTR 364
Query: 722 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
IF++HT M L++DV+L+E + ++GADI A+C EA + ALR K++ + ++
Sbjct: 365 RRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKK 424
Query: 782 ESEKFL 787
EK +
Sbjct: 425 AKEKVM 430
Score = 219 bits (552), Expect = 1e-55
Identities = 115/229 (50%), Positives = 155/229 (67%), Gaps = 3/229 (1%)
Query: 193 EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLY 252
EV P ++ EK P +Y DIGGL+ I++I+E VELPL HPEL+E +GI+PPKGV+LY
Sbjct: 169 EVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILY 228
Query: 253 GPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFID 312
G PGTGKTLLAKAVAN +A F+ + G E++ KY G+ + +RE+F+ A++ +P+I+FID
Sbjct: 229 GEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFID 288
Query: 313 EIDAIAPKREEV--VGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPG 369
EIDA+ KR + GE E +R + +LL +DG SRG V VI ATNR ++LDPAL RPG
Sbjct: 289 EIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPG 348
Query: 370 RFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDD 418
R DR+IE +PD + R+ I QIHT M + D E + E D
Sbjct: 349 RIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGAD 397
>gb|AAF22522.1|AF123391_1 (AF123391) 26S proteasome AAA-ATPase subunit RPT2a [Arabidopsis
thaliana]
Length = 443
Score = 232 bits (585), Expect = 1e-59
Identities = 138/366 (37%), Positives = 211/366 (56%), Gaps = 18/366 (4%)
Query: 426 KKIIEKVSKAKSEEEIKDILREDRNLYIEVR-TKLIDKLLDELAEVTHGFVGADLAALAR 484
++ + + K +EE + EDR+ ++R T + L+EL + H V + +
Sbjct: 79 EEFVANQERLKPQEEKAE---EDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGP--- 132
Query: 485 EAAMVVLRRLIKEGKINPEAETIPR-EVLEELKVTKADFYEALKMVEPSALREVLIEVPN 543
V + + + ++ P + +VL + + + + V+P + + P
Sbjct: 133 -EYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDE-------VDPMVSVMKVEKAPL 184
Query: 544 VHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
+ DIGGLE QE++EAVE PL +P+ ++ +GI PPKGV+LYG PGTGKTLLAKAVA
Sbjct: 185 ESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVAN 244
Query: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE--G 661
+ A F+ + G E++ K++G+ K +RE+FR A SP+I+FIDEIDA+ R A G
Sbjct: 245 STSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGG 304
Query: 662 EKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 721
E+ R + +LL ++DG V VI ATNR + LDPALLRPGR DR I P PD K R
Sbjct: 305 EREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTR 364
Query: 722 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
IF++HT M L++DV+L+E + ++GADI A+C EA + ALR K++ + ++
Sbjct: 365 RRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKK 424
Query: 782 ESEKFL 787
EK +
Sbjct: 425 AKEKVM 430
Score = 219 bits (552), Expect = 1e-55
Identities = 115/229 (50%), Positives = 155/229 (67%), Gaps = 3/229 (1%)
Query: 193 EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLY 252
EV P ++ EK P +Y DIGGL+ I++I+E VELPL HPEL+E +GI+PPKGV+LY
Sbjct: 169 EVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILY 228
Query: 253 GPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFID 312
G PGTGKTLLAKAVAN +A F+ + G E++ KY G+ + +RE+F+ A++ +P+I+FID
Sbjct: 229 GEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFID 288
Query: 313 EIDAIAPKREEV--VGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPG 369
EIDA+ KR + GE E +R + +LL +DG SRG V VI ATNR ++LDPAL RPG
Sbjct: 289 EIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPG 348
Query: 370 RFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDD 418
R DR+IE +PD + R+ I QIHT M + D E + E D
Sbjct: 349 RIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGAD 397
>emb|CAC14432.1| (AJ291500) 26S proteasome subunit 4-like protein [Brassica napus]
Length = 443
Score = 232 bits (585), Expect = 1e-59
Identities = 138/366 (37%), Positives = 211/366 (56%), Gaps = 18/366 (4%)
Query: 426 KKIIEKVSKAKSEEEIKDILREDRNLYIEVR-TKLIDKLLDELAEVTHGFVGADLAALAR 484
++ + + K +EE + EDR+ ++R T + L+EL + H V + +
Sbjct: 79 EEFVANQERLKPQEEKAE---EDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGP--- 132
Query: 485 EAAMVVLRRLIKEGKINPEAETIPR-EVLEELKVTKADFYEALKMVEPSALREVLIEVPN 543
V + + + ++ P + +VL + + + + V+P + + P
Sbjct: 133 -EYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDE-------VDPMVSVMKVEKAPL 184
Query: 544 VHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
+ DIGGLE QE++EAVE PL +P+ ++ +GI PPKGV+LYG PGTGKTLLAKAVA
Sbjct: 185 ESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVAN 244
Query: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE--G 661
+ A F+ + G E++ K++G+ K +RE+FR A SP+I+FIDEIDA+ R A G
Sbjct: 245 STSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGG 304
Query: 662 EKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 721
E+ R + +LL ++DG V VI ATNR + LDPALLRPGR DR I P PD K R
Sbjct: 305 EREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTR 364
Query: 722 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
IF++HT M L++DV+L+E + ++GADI A+C EA + ALR K++ + ++
Sbjct: 365 RRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKK 424
Query: 782 ESEKFL 787
EK +
Sbjct: 425 AKEKVM 430
Score = 219 bits (552), Expect = 1e-55
Identities = 115/229 (50%), Positives = 155/229 (67%), Gaps = 3/229 (1%)
Query: 193 EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLY 252
EV P ++ EK P +Y DIGGL+ I++I+E VELPL HPEL+E +GI+PPKGV+LY
Sbjct: 169 EVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILY 228
Query: 253 GPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFID 312
G PGTGKTLLAKAVAN +A F+ + G E++ KY G+ + +RE+F+ A++ +P+I+FID
Sbjct: 229 GEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFID 288
Query: 313 EIDAIAPKREEV--VGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPG 369
EIDA+ KR + GE E +R + +LL +DG SRG V VI ATNR ++LDPAL RPG
Sbjct: 289 EIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPG 348
Query: 370 RFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDD 418
R DR+IE +PD + R+ I QIHT M + D E + E D
Sbjct: 349 RIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGAD 397
>gb|AAG20171.1| (AE005094) ATP-dependent 26S proteinase regulatory subunit 4
homolog; PrrIV1 [Halobacterium sp. NRC-1]
Length = 411
Score = 231 bits (584), Expect = 2e-59
Identities = 120/250 (48%), Positives = 168/250 (67%), Gaps = 2/250 (0%)
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
E P+V + DIGGL+D +E+REAVE PL P+ F +G+ PP GVLL+GPPGTGKT+LAK
Sbjct: 145 ESPSVTYADIGGLDDQLREVREAVEDPLVNPEKFDAVGVEPPSGVLLHGPPGTGKTMLAK 204
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR--G 657
AVA ++ A+FI + G E++ K++GE + +R++F A Q PAIIFIDEIDA+A R
Sbjct: 205 AVANQTDASFIKMAGSELVRKFIGEGSRLVRDLFELAEQKDPAIIFIDEIDAVAAKRTDS 264
Query: 658 TAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 717
G+ R + QLL+EMDG E + +IAATNR D+LD A+LRPGRFDRLI VP P+
Sbjct: 265 KTSGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDSAILRPGRFDRLIEVPNPN 324
Query: 718 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPE 777
AR I ++H M +AD VD +LA T ++GA +A++ EA M A+R ++ +
Sbjct: 325 PDARERILEIHAGEMNVADSVDFSDLAADTAEFSGAQLASLATEAGMFAIRDDRDEVHRQ 384
Query: 778 ELEEESEKFL 787
+ ++ EK +
Sbjct: 385 DFDDAYEKLV 394
Score = 212 bits (533), Expect = 2e-53
Identities = 113/218 (51%), Positives = 150/218 (67%), Gaps = 5/218 (2%)
Query: 184 VQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGI 243
VQ + E + QA+EV E P VTY DIGGL + + ++RE VE PL +PE F+ +G+
Sbjct: 126 VQRVLDDETDARAQAMEVDES--PSVTYADIGGLDDQLREVREAVEDPLVNPEKFDAVGV 183
Query: 244 EPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEE 303
EPP GVLL+GPPGTGKT+LAKAVAN+ +A FI + G E++ K+ GE +R++F+ AE+
Sbjct: 184 EPPSGVLLHGPPGTGKTMLAKAVANQTDASFIKMAGSELVRKFIGEGSRLVRDLFELAEQ 243
Query: 304 NAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDA 360
PAIIFIDEIDA+A KR + G+ E +R + QLL+ MDG RG + +IAATNR D
Sbjct: 244 KDPAIIFIDEIDAVAAKRTDSKTSGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDM 303
Query: 361 LDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPI 398
LD A+ RPGRFDR IEV P+ R+ IL+IH M +
Sbjct: 304 LDSAILRPGRFDRLIEVPNPNPDARERILEIHAGEMNV 341
>pir||T44596 26S proteasome regulatory complex chain p50 [imported] - fruit fly
(Drosophila melanogaster)
>gi|5679018|gb|AAD46823.1|AF160882_1 (AF160882)
BcDNA.GH12068 [Drosophila melanogaster]
>gi|6434948|gb|AAF08386.1|AF145305_1 (AF145305) 26S
proteasome regulatory complex subunit p50 [Drosophila
melanogaster] >gi|7301041|gb|AAF56177.1| (AE003744) Rpt5
gene product [Drosophila melanogaster]
Length = 428
Score = 231 bits (583), Expect = 2e-59
Identities = 146/389 (37%), Positives = 224/389 (57%), Gaps = 17/389 (4%)
Query: 393 TRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLY 452
TR M E K VI+ E++ + EKIK EK+ K+ + + E L
Sbjct: 34 TRLMDNEIKIMKSEVIRITHEIQAQN----EKIKDNTEKIKVNKTLPYLVSNVIE--LLD 87
Query: 453 IEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINP-EAETIPREV 511
++ + + D + L G A + R+A + + L+ K+ P + + ++
Sbjct: 88 VDPQEEEDDGSVTVLDNQRKGKC-AVIKTSTRQAYFLPVIGLVDAEKLKPGDLVGVNKDS 146
Query: 512 LEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPK 571
L+ A++ +K +E E P + DIGGL+ QEL EAV P+ + +
Sbjct: 147 YLILETLPAEYDARVKAMEVD-------ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKE 199
Query: 572 AFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIRE 631
FK LGI PPKGVLLYGPPGTGKTLLA+A A ++++ F+ + GP+++ ++G+ K +R+
Sbjct: 200 KFKNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259
Query: 632 IFRKARQASPAIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLTEMDGLVENSGVVVIA 689
F A++ +PAIIFIDE+DAI R +E G++ R + +LL ++DG + + VIA
Sbjct: 260 AFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIA 319
Query: 690 ATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEG 749
ATNR DILDPALLR GR DR I P P+E+AR I ++H+R M +++DV+ +EL+R T+
Sbjct: 320 ATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSNDVNFEELSRSTDD 379
Query: 750 YTGADIAAVCREAAMNALRRAVAKLSPEE 778
+ GA AVC EA M ALRR+ ++ E+
Sbjct: 380 FNGAQCKAVCVEAGMIALRRSANSVTHED 408
Score = 199 bits (500), Expect = 1e-49
Identities = 117/297 (39%), Positives = 171/297 (57%), Gaps = 21/297 (7%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + ++++ T+P E + +A+EV E P Y DIGGL + I+++
Sbjct: 140 VGVNKDSYLILETLP---------AEYDARVKAMEVDER--PTEQYSDIGGLDKQIQELI 188
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E V LP+ H E F+ LGI PPKGVLLYGPPGTGKTLLA+A A + + F+ + GP+++
Sbjct: 189 EAVVLPMTHKEKFKNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM 248
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
+ G+ + +R+ F A+E APAIIFIDE+DAI KR E G+ E +R + +LL +DG
Sbjct: 249 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 308
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
S + VIAATNR D LDPAL R GR DR+IE P+++ R I+QIH+R M + D
Sbjct: 309 FSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSNDV 368
Query: 403 EKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILRED-RNLYIEVRTK 458
E + ++ D F+ + K + + + ED + +EV+ K
Sbjct: 369 NFEELSRS------TDDFNGAQCKAVCVEAGMIALRRSANSVTHEDFMDAIMEVQAK 419
>sp|P17980|PRSA_HUMAN 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 1) (TBP-1)
(PROTEASOME SUBUNIT P50)
Length = 439
Score = 231 bits (582), Expect = 3e-59
Identities = 149/407 (36%), Positives = 228/407 (55%), Gaps = 26/407 (6%)
Query: 382 KQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKS---- 437
K +EI+Q TR + E K V++ EL+ K+KIK+ EK+ K+
Sbjct: 35 KMSTEEIIQ-RTRLLDSEIKIMKSEVLRVTHELQAM----KDKIKENSEKIKVNKTLPYL 89
Query: 438 EEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKE 497
+ ++L D N E + +L G A + R+ + + L+
Sbjct: 90 VSNVIELLDVDPNDQEEDGANI------DLDSQRKGKC-AVIKTSTRQTYFLPVIGLVDA 142
Query: 498 GKINP-EAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVK 556
K+ P + + ++ L+ ++ +K +E E P + DIGGL+
Sbjct: 143 EKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVD-------ERPTEQYSDIGGLDKQI 195
Query: 557 QELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPE 616
QEL EA+ P+ + + F+ LGI PPKGVL+YGPPGTGKTLLA+A A +++A F+ + GP+
Sbjct: 196 QELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQ 255
Query: 617 VLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLT 674
++ ++G+ K +R+ F A++ +P+IIFIDE+DAI R +E G++ R + +LL
Sbjct: 256 LVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 315
Query: 675 EMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPL 734
++DG N+ V VIAATNR DILDPALLR GR DR I P P+E+AR I ++H+R M +
Sbjct: 316 QLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNV 375
Query: 735 ADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
+ DV+ +ELAR T+ + GA AVC EA M AL R +L+ E+ E
Sbjct: 376 SPDVNYEELARCTDDFNGAQCKAVCVEAGMIALARGATELTHEDYME 422
Score = 205 bits (515), Expect = 2e-51
Identities = 110/247 (44%), Positives = 159/247 (63%), Gaps = 14/247 (5%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + ++++ T+P TE + +A+EV E P Y DIGGL + I+++
Sbjct: 151 VGVNKDSYLILETLP---------TEYDSRVKAMEVDER--PTEQYSDIGGLDKQIQELV 199
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E + LP+ H E FE LGI+PPKGVL+YGPPGTGKTLLA+A A + A F+ + GP+++
Sbjct: 200 EAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQM 259
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
+ G+ + +R+ F A+E AP+IIFIDE+DAI KR E G+ E +R + +LL +DG
Sbjct: 260 FIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 319
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
+ +V VIAATNR D LDPAL R GR DR+IE +P+++ R I+QIH+R M + PD
Sbjct: 320 FQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDV 379
Query: 403 EKETVIK 409
E + +
Sbjct: 380 NYEELAR 386
>sp|O23894|PRSA_BRACM 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) >gi|2564337|dbj|BAA22951.1| (D88663)
Tat binding protein 1 [Brassica rapa]
Length = 424
Score = 230 bits (581), Expect = 4e-59
Identities = 115/244 (47%), Positives = 166/244 (67%), Gaps = 2/244 (0%)
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
E P ++DIGGLE QEL EA+ P+ + + F++LG+ PPKGVLLYGPPGTGKTL+A+
Sbjct: 164 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMAR 223
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA 659
A A ++ A F+ + GP+++ ++G+ K +R+ F+ A++ +P IIFIDEIDAI R +
Sbjct: 224 ACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDS 283
Query: 660 E--GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 717
E G++ R + +LL ++DG + + VIAATNR DILDPAL+R GR DR I P P
Sbjct: 284 EVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPT 343
Query: 718 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPE 777
E+AR I ++H+R M + DV+ +ELAR T+ + GA + AVC EA M ALRR +++ E
Sbjct: 344 EEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 403
Query: 778 ELEE 781
+ E
Sbjct: 404 DFNE 407
Score = 212 bits (535), Expect = 1e-53
Identities = 119/288 (41%), Positives = 178/288 (61%), Gaps = 20/288 (6%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + +++++T+P Y++ V+ A+EV E+ P Y DIGGL++ I+++
Sbjct: 136 VGVNKDSYLILDTLPS-----EYDSRVK----AMEVDEK--PTEDYNDIGGLEKQIQELV 184
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E + LP+ H E FE+LG+ PPKGVLLYGPPGTGKTL+A+A A + NA F+ + GP+++
Sbjct: 185 EAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
+ G+ + +R+ F+ A+E AP IIFIDEIDAI KR EV G+ E +R + +LL +DG
Sbjct: 245 FIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG 304
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
S ++ VIAATNR D LDPAL R GR DR+IE P ++ R ILQIH+R M + PD
Sbjct: 305 FSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDV 364
Query: 403 EKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRN 450
E + ++ D F+ ++K + + + ++ ED N
Sbjct: 365 NFEELARS------TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 406
>gb|AAF22525.1|AF123394_1 (AF123394) 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis
thaliana] >gi|7596759|gb|AAF64530.1| (AC009606) 26S
proteasome AAA-ATPase subunit RPT5a [Arabidopsis
thaliana]
Length = 424
Score = 230 bits (581), Expect = 4e-59
Identities = 115/244 (47%), Positives = 166/244 (67%), Gaps = 2/244 (0%)
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
E P ++DIGGLE QEL EA+ P+ + + F++LG+ PPKGVLLYGPPGTGKTL+A+
Sbjct: 164 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMAR 223
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA 659
A A ++ A F+ + GP+++ ++G+ K +R+ F+ A++ +P IIFIDEIDAI R +
Sbjct: 224 ACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDS 283
Query: 660 E--GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 717
E G++ R + +LL ++DG + + VIAATNR DILDPAL+R GR DR I P P
Sbjct: 284 EVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPT 343
Query: 718 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPE 777
E+AR I ++H+R M + DV+ +ELAR T+ + GA + AVC EA M ALRR +++ E
Sbjct: 344 EEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 403
Query: 778 ELEE 781
+ E
Sbjct: 404 DFNE 407
Score = 212 bits (535), Expect = 1e-53
Identities = 119/288 (41%), Positives = 178/288 (61%), Gaps = 20/288 (6%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + +++++T+P Y++ V+ A+EV E+ P Y DIGGL++ I+++
Sbjct: 136 VGVNKDSYLILDTLPS-----EYDSRVK----AMEVDEK--PTEDYNDIGGLEKQIQELV 184
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E + LP+ H E FE+LG+ PPKGVLLYGPPGTGKTL+A+A A + NA F+ + GP+++
Sbjct: 185 EAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
+ G+ + +R+ F+ A+E AP IIFIDEIDAI KR EV G+ E +R + +LL +DG
Sbjct: 245 FIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG 304
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
S ++ VIAATNR D LDPAL R GR DR+IE P ++ R ILQIH+R M + PD
Sbjct: 305 FSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDV 364
Query: 403 EKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRN 450
E + ++ D F+ ++K + + + ++ ED N
Sbjct: 365 NFEELARS------TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 406
>gi|4506211 proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Homo
sapiens] >gi|107855|pir||A34832 Tat-binding protein-1 -
human >gi|338700|gb|AAA36666.1| (M34079) tat binding
protein-1 (tbp-1) [Homo sapiens]
Length = 404
Score = 229 bits (579), Expect = 7e-59
Identities = 123/279 (44%), Positives = 175/279 (62%), Gaps = 20/279 (7%)
Query: 505 ETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVE 564
ET+P E +K + D E P + DIGGL+ QEL EA+
Sbjct: 127 ETLPTEYDSRVKAMEVD------------------ERPTEQYSDIGGLDKQIQELVEAIV 168
Query: 565 WPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGE 624
P+ + + F+ LGI PPKGVL+YGPPGTGKTLLA+A A +++A F+ + GP+++ ++G+
Sbjct: 169 LPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 228
Query: 625 SEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLTEMDGLVEN 682
K +R+ F A++ +P+IIFIDE+DAI R +E G++ R + +LL ++DG N
Sbjct: 229 GAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPN 288
Query: 683 SGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKE 742
+ V VIAATNR DILDPALLR GR DR I P P+E+AR I ++H+R M ++ DV+ +E
Sbjct: 289 TQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEE 348
Query: 743 LARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
LAR T+ + GA AVC EA M AL R +L+ E+ E
Sbjct: 349 LARCTDDFNGAQCKAVCVEAGMIALARGATELTHEDYME 387
Score = 205 bits (515), Expect = 2e-51
Identities = 110/247 (44%), Positives = 159/247 (63%), Gaps = 14/247 (5%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + ++++ T+P TE + +A+EV E P Y DIGGL + I+++
Sbjct: 116 VGVNKDSYLILETLP---------TEYDSRVKAMEVDER--PTEQYSDIGGLDKQIQELV 164
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E + LP+ H E FE LGI+PPKGVL+YGPPGTGKTLLA+A A + A F+ + GP+++
Sbjct: 165 EAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQM 224
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
+ G+ + +R+ F A+E AP+IIFIDE+DAI KR E G+ E +R + +LL +DG
Sbjct: 225 FIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 284
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
+ +V VIAATNR D LDPAL R GR DR+IE +P+++ R I+QIH+R M + PD
Sbjct: 285 FQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDV 344
Query: 403 EKETVIK 409
E + +
Sbjct: 345 NYEELAR 351
>dbj|BAB17625.1| (AB033536) 26S proteasome regulatory particle triple-A ATPase
subunit4 [Oryza sativa]
Length = 400
Score = 229 bits (578), Expect = 9e-59
Identities = 117/243 (48%), Positives = 161/243 (66%), Gaps = 4/243 (1%)
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
V+P + + NV + +GGL D +ELRE++E PL P+ F R+GI PPKGVLLYG
Sbjct: 122 VDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYG 181
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PPGTGKTLLA+A+A+ ANF+ I ++ K++GES + IRE+F AR P IIF+DE
Sbjct: 182 PPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDE 241
Query: 649 IDAIAPAR---GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPG 705
IDAI R GT+ ++ R + +LL ++DG E V +I ATNRPD+LDPALLRPG
Sbjct: 242 IDAIGGRRFSEGTSADREI-QRTLMELLNQLDGFDELGKVKMIMATNRPDVLDPALLRPG 300
Query: 706 RFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMN 765
R DR I +P P+E+AR E+ K+H G+ ++D + + + EG+ GAD+ VC EA M
Sbjct: 301 RLDRKIEIPLPNEQARMEVLKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMA 360
Query: 766 ALR 768
A+R
Sbjct: 361 AIR 363
Score = 211 bits (532), Expect = 2e-53
Identities = 122/304 (40%), Positives = 180/304 (59%), Gaps = 24/304 (7%)
Query: 175 VVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKH 234
++ T+P+ + + YN + E V+Y +GGL + I ++RE +ELPL +
Sbjct: 114 IMRTLPREVDPVVYN-----------MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMN 162
Query: 235 PELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERL 294
PELF R+GI+PPKGVLLYGPPGTGKTLLA+A+A+ +A F+ I I+ KY GES +
Sbjct: 163 PELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLI 222
Query: 295 REIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIV 351
RE+F A ++ P IIF+DEIDAI +R E + E +R + +LL +DG GKV +
Sbjct: 223 REMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKM 282
Query: 352 IAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKAL 411
I ATNRPD LDPAL RPGR DR+IE+ +P++Q R E+L+IH G+ + + E V+K
Sbjct: 283 IMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGEIDYEAVVKLA 342
Query: 412 KELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLID-KLLDELAEV 470
+ F+ ++ + + A E ++ ED +++ KL D K L+ A
Sbjct: 343 ------EGFNGADLRNVCTEAGMAAIRAERDYVVHED---FMKAVRKLNDAKKLESSAHY 393
Query: 471 THGF 474
+ F
Sbjct: 394 SADF 397
>sp|P47210|PRS8_HUMAN 26S PROTEASE REGULATORY SUBUNIT 8 (PROTEASOME SUBUNIT P45) (THYROID
HORMONE RECEPTOR INTERACTING PROTEIN 1) (TRIP1)
>gi|2136007|pir||I53510 proteasome subunit p45 - human
>gi|7435734|pir||S65536 26S proteasome chain p45 - human
>gi|976227|dbj|BAA07919.1| (D44467) 26S proteasome
subunit p45 [Homo sapiens] >gi|1096205|prf||2111282A 26S
proteasome [Homo sapiens]
Length = 406
Score = 229 bits (577), Expect = 1e-58
Identities = 139/369 (37%), Positives = 218/369 (58%), Gaps = 32/369 (8%)
Query: 445 LREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGK--INP 502
L+ RN + + +L+ + L L E +VG + A+ ++ +V ++ EGK ++
Sbjct: 45 LQAQRN-ELNAKVRLLRRELQLLQE-QGSYVGEVVRAMDKKKVLV---KVHPEGKFVVDV 99
Query: 503 EAETIPREVLEELKVT-KADFYEALKM----VEPSALREVLIEVPNVHWDDIGGLEDVKQ 557
+ +V +V + D Y K+ V+P ++ +VP+ ++ IGGL+ +
Sbjct: 100 DKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIK 159
Query: 558 ELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEV 617
E++E +E P+K+P+ F+ LGI PKGVLLYGPPGTGKTLLA+AVA + FI + G E+
Sbjct: 160 EIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 219
Query: 618 LSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR--GTAEGEKVTDRIINQLLTE 675
+ K++GE + +RE+F AR+ +P+IIF+DEID+I +R G + G+ R + +LL +
Sbjct: 220 VQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQ 279
Query: 676 MDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLA 735
+DG + VI ATNR DILD ALLRPGR DR I P P+E+AR +I K+H+R M L
Sbjct: 280 LDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT 339
Query: 736 DDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRK 795
++L+++A G +GA++ VC EA M ALR + + VT++
Sbjct: 340 RGINLRKIAELMPGASGAEVKGVCTEAGMYALRE------------------RRVHVTQE 381
Query: 796 DFEVALKKV 804
DFE+A+ KV
Sbjct: 382 DFEMAVAKV 390
Score = 205 bits (516), Expect = 2e-51
Identities = 108/212 (50%), Positives = 150/212 (69%), Gaps = 8/212 (3%)
Query: 193 EVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPK 247
++LP V+ + EK+P+ TYE IGGL + I++I+E++ELP+KHPELFE LGI PK
Sbjct: 125 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 184
Query: 248 GVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPA 307
GVLLYGPPGTGKTLLA+AVA+ + FI ++G E++ K+ GE +RE+F A E+AP+
Sbjct: 185 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 244
Query: 308 IIFIDEIDAIAPKREE--VVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
IIF+DEID+I R E G+ E +R + +LL +DG ++ + VI ATNR D LD A
Sbjct: 245 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSA 304
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGM 396
L RPGR DR+IE P+++ R +IL+IH+R M
Sbjct: 305 LLRPGRIDRKIEFPPPNEEARLDILKIHSRKM 336
>gb|AAD46145.1| (AF081573) 19S proteasome regulatory complex subunit S6A
[Arabidopsis thaliana]
Length = 424
Score = 229 bits (577), Expect = 1e-58
Identities = 115/244 (47%), Positives = 165/244 (67%), Gaps = 2/244 (0%)
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
E P ++DIGGLE QEL EA+ P+ + + F++LG+ PPKGVLLYGPPGTGKTL+A+
Sbjct: 164 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMAR 223
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA 659
A A ++ A F+ + GP+++ ++G+ K +R+ F+ A++ +P IIFIDEIDAI R +
Sbjct: 224 ACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDS 283
Query: 660 E--GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 717
E G++ R + +LL ++DG + + VIAATNR DILDPAL+R GR DR I P P
Sbjct: 284 EVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPT 343
Query: 718 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPE 777
E+AR I ++H+R M + DV +ELAR T+ + GA + AVC EA M ALRR +++ E
Sbjct: 344 EEARARILQIHSRKMNVHPDVHFEELARSTDDFHGAQLKAVCVEAGMLALRRDATEVNHE 403
Query: 778 ELEE 781
+ E
Sbjct: 404 DFNE 407
Score = 212 bits (533), Expect = 2e-53
Identities = 119/288 (41%), Positives = 177/288 (61%), Gaps = 20/288 (6%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + +++++T+P Y++ V+ A+EV E+ P Y DIGGL++ I+++
Sbjct: 136 VGVNKDSYLILDTLPS-----EYDSRVK----AMEVDEK--PTEDYNDIGGLEKQIQELV 184
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E + LP+ H E FE+LG+ PPKGVLLYGPPGTGKTL+A+A A + NA F+ + GP+++
Sbjct: 185 EAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
+ G+ + +R+ F+ A+E AP IIFIDEIDAI KR EV G+ E +R + +LL +DG
Sbjct: 245 FIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG 304
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
S ++ VIAATNR D LDPAL R GR DR+IE P ++ R ILQIH+R M + PD
Sbjct: 305 FSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDV 364
Query: 403 EKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRN 450
E + ++ D F ++K + + + ++ ED N
Sbjct: 365 HFEELARS------TDDFHGAQLKAVCVEAGMLALRRDATEVNHEDFN 406
>gb|AAB24840.1| Tat binding protein 1, TBP-1=transcriptional activator [human,
Peptide, 439 aa]
Length = 439
Score = 228 bits (576), Expect = 2e-58
Identities = 149/407 (36%), Positives = 227/407 (55%), Gaps = 26/407 (6%)
Query: 382 KQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKS---- 437
K +EI+Q TR + E K V++ EL+ K+KIK+ EK+ K+
Sbjct: 35 KMSTEEIIQ-RTRLLDSEIKIMKSEVLRVTHELQAM----KDKIKENSEKIKVNKTLPYL 89
Query: 438 EEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKE 497
+ ++L D N E + +L G A + R+ + + L+
Sbjct: 90 VSNVIELLDVDPNDQEEDGANI------DLDSQRKGKC-AVIKTSTRQTYFLPVIGLVDA 142
Query: 498 GKINP-EAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVK 556
K+ P + + ++ L+ ++ +K +E E P + DIGGL+
Sbjct: 143 EKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVD-------ERPTEQYSDIGGLDKQI 195
Query: 557 QELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPE 616
QEL EA+ P+ + + F+ LGI PPKGVL+YGPPGTGKTLLA+A A +++A F+ + GP+
Sbjct: 196 QELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQ 255
Query: 617 VLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLT 674
++ ++G+ K +R+ F A++ +P+IIFIDE+DAI R +E G++ R + +LL
Sbjct: 256 LVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 315
Query: 675 EMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPL 734
++DG N+ V VIAATNR DILDPALLR GR DR I P P+E+AR I ++H+R M +
Sbjct: 316 QLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNV 375
Query: 735 ADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
+ DV+ +ELAR T+ GA AVC EA M AL R +L+ E+ E
Sbjct: 376 SPDVNYEELARCTDDPNGAQCKAVCVEAGMIALARGATELTHEDYME 422
Score = 205 bits (515), Expect = 2e-51
Identities = 110/247 (44%), Positives = 159/247 (63%), Gaps = 14/247 (5%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + ++++ T+P TE + +A+EV E P Y DIGGL + I+++
Sbjct: 151 VGVNKDSYLILETLP---------TEYDSRVKAMEVDER--PTEQYSDIGGLDKQIQELV 199
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E + LP+ H E FE LGI+PPKGVL+YGPPGTGKTLLA+A A + A F+ + GP+++
Sbjct: 200 EAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQM 259
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
+ G+ + +R+ F A+E AP+IIFIDE+DAI KR E G+ E +R + +LL +DG
Sbjct: 260 FIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 319
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
+ +V VIAATNR D LDPAL R GR DR+IE +P+++ R I+QIH+R M + PD
Sbjct: 320 FQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDV 379
Query: 403 EKETVIK 409
E + +
Sbjct: 380 NYEELAR 386
>gi|7110703 protease (prosome, macropain) 26S subunit, ATPase 5 [Mus musculus]
>gi|11425146|ref|XP_008254.1| proteasome (prosome,
macropain) 26S subunit, ATPase, 5 [Homo sapiens]
>gi|1709800|sp|P52915|PRS8_MOUSE 26S PROTEASE REGULATORY
SUBUNIT 8 (MSUG1 PROTEIN) (TAT-BINDING PROTEIN HOMOLOG
10) (TBP10) (P45/SUG) >gi|2137798|pir||S61923 SUG1
protein - mouse >gi|1165125|emb|CAA90961.1| (Z54219)
mSUG1 protein [Mus musculus] >gi|1262433|emb|CAA61863.1|
(X89718) 26S protease subunit [Sus scrofa]
>gi|1395177|dbj|BAA11938.1| (D83521) proteasomal ATPase
(rat SUG1) [Rattus norvegicus]
>gi|2564003|dbj|BAA22933.1| (AB000491) proteasome
p45/SUG [Rattus norvegicus] >gi|3193258|gb|AAC19266.1|
(AF069053) proteasome subunit SUG1 [Bos taurus]
Length = 406
Score = 228 bits (576), Expect = 2e-58
Identities = 139/369 (37%), Positives = 218/369 (58%), Gaps = 32/369 (8%)
Query: 445 LREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGK--INP 502
L+ RN + + +L+ + L L E +VG + A+ ++ +V ++ EGK ++
Sbjct: 45 LQAQRN-ELNAKVRLLREELQLLQE-QGSYVGEVVRAMDKKKVLV---KVHPEGKFVVDV 99
Query: 503 EAETIPREVLEELKVT-KADFYEALKM----VEPSALREVLIEVPNVHWDDIGGLEDVKQ 557
+ +V +V + D Y K+ V+P ++ +VP+ ++ IGGL+ +
Sbjct: 100 DKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIK 159
Query: 558 ELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEV 617
E++E +E P+K+P+ F+ LGI PKGVLLYGPPGTGKTLLA+AVA + FI + G E+
Sbjct: 160 EIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 219
Query: 618 LSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR--GTAEGEKVTDRIINQLLTE 675
+ K++GE + +RE+F AR+ +P+IIF+DEID+I +R G + G+ R + +LL +
Sbjct: 220 VQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQ 279
Query: 676 MDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLA 735
+DG + VI ATNR DILD ALLRPGR DR I P P+E+AR +I K+H+R M L
Sbjct: 280 LDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT 339
Query: 736 DDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRK 795
++L+++A G +GA++ VC EA M ALR + + VT++
Sbjct: 340 RGINLRKIAELMPGASGAEVKGVCTEAGMYALRE------------------RRVHVTQE 381
Query: 796 DFEVALKKV 804
DFE+A+ KV
Sbjct: 382 DFEMAVAKV 390
Score = 205 bits (516), Expect = 2e-51
Identities = 108/212 (50%), Positives = 150/212 (69%), Gaps = 8/212 (3%)
Query: 193 EVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPK 247
++LP V+ + EK+P+ TYE IGGL + I++I+E++ELP+KHPELFE LGI PK
Sbjct: 125 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 184
Query: 248 GVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPA 307
GVLLYGPPGTGKTLLA+AVA+ + FI ++G E++ K+ GE +RE+F A E+AP+
Sbjct: 185 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 244
Query: 308 IIFIDEIDAIAPKREE--VVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
IIF+DEID+I R E G+ E +R + +LL +DG ++ + VI ATNR D LD A
Sbjct: 245 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSA 304
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGM 396
L RPGR DR+IE P+++ R +IL+IH+R M
Sbjct: 305 LLRPGRIDRKIEFPPPNEEARLDILKIHSRKM 336
>emb|CAA61864.1| (X89719) put. 26S protease subunit [Sus scrofa]
Length = 398
Score = 228 bits (576), Expect = 2e-58
Identities = 139/369 (37%), Positives = 218/369 (58%), Gaps = 32/369 (8%)
Query: 445 LREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGK--INP 502
L+ RN + + +L+ + L L E +VG + A+ ++ +V ++ EGK ++
Sbjct: 37 LQAQRN-ELNAKVRLLREELQLLQE-QGSYVGEVVRAMDKKKVLV---KVHPEGKFVVDV 91
Query: 503 EAETIPREVLEELKVT-KADFYEALKM----VEPSALREVLIEVPNVHWDDIGGLEDVKQ 557
+ +V +V + D Y K+ V+P ++ +VP+ ++ IGGL+ +
Sbjct: 92 DKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIK 151
Query: 558 ELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEV 617
E++E +E P+K+P+ F+ LGI PKGVLLYGPPGTGKTLLA+AVA + FI + G E+
Sbjct: 152 EIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 211
Query: 618 LSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR--GTAEGEKVTDRIINQLLTE 675
+ K++GE + +RE+F AR+ +P+IIF+DEID+I +R G + G+ R + +LL +
Sbjct: 212 VQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQ 271
Query: 676 MDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLA 735
+DG + VI ATNR DILD ALLRPGR DR I P P+E+AR +I K+H+R M L
Sbjct: 272 LDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT 331
Query: 736 DDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRK 795
++L+++A G +GA++ VC EA M ALR + + VT++
Sbjct: 332 RGINLRKIAELMPGASGAEVKGVCTEAGMYALRE------------------RRVHVTQE 373
Query: 796 DFEVALKKV 804
DFE+A+ KV
Sbjct: 374 DFEMAVAKV 382
Score = 205 bits (516), Expect = 2e-51
Identities = 108/212 (50%), Positives = 150/212 (69%), Gaps = 8/212 (3%)
Query: 193 EVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPK 247
++LP V+ + EK+P+ TYE IGGL + I++I+E++ELP+KHPELFE LGI PK
Sbjct: 117 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 176
Query: 248 GVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPA 307
GVLLYGPPGTGKTLLA+AVA+ + FI ++G E++ K+ GE +RE+F A E+AP+
Sbjct: 177 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 236
Query: 308 IIFIDEIDAIAPKREE--VVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
IIF+DEID+I R E G+ E +R + +LL +DG ++ + VI ATNR D LD A
Sbjct: 237 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSA 296
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGM 396
L RPGR DR+IE P+++ R +IL+IH+R M
Sbjct: 297 LLRPGRIDRKIEFPPPNEEARLDILKIHSRKM 328
>pir||T43799 proteasome protein p45/SUG [imported] - rat (fragment)
>gi|2564007|dbj|BAA22935.1| (AB000493) proteasome
p45/SUG [Rattus norvegicus]
Length = 374
Score = 228 bits (576), Expect = 2e-58
Identities = 139/369 (37%), Positives = 218/369 (58%), Gaps = 32/369 (8%)
Query: 445 LREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGK--INP 502
L+ RN + + +L+ + L L E +VG + A+ ++ +V ++ EGK ++
Sbjct: 13 LQAQRN-ELNAKVRLLREELQLLQE-QGSYVGEVVRAMDKKKVLV---KVHPEGKFVVDV 67
Query: 503 EAETIPREVLEELKVT-KADFYEALKM----VEPSALREVLIEVPNVHWDDIGGLEDVKQ 557
+ +V +V + D Y K+ V+P ++ +VP+ ++ IGGL+ +
Sbjct: 68 DKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIK 127
Query: 558 ELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEV 617
E++E +E P+K+P+ F+ LGI PKGVLLYGPPGTGKTLLA+AVA + FI + G E+
Sbjct: 128 EIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 187
Query: 618 LSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR--GTAEGEKVTDRIINQLLTE 675
+ K++GE + +RE+F AR+ +P+IIF+DEID+I +R G + G+ R + +LL +
Sbjct: 188 VQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQ 247
Query: 676 MDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLA 735
+DG + VI ATNR DILD ALLRPGR DR I P P+E+AR +I K+H+R M L
Sbjct: 248 LDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT 307
Query: 736 DDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRK 795
++L+++A G +GA++ VC EA M ALR + + VT++
Sbjct: 308 RGINLRKIAELMPGASGAEVKGVCTEAGMYALRE------------------RRVHVTQE 349
Query: 796 DFEVALKKV 804
DFE+A+ KV
Sbjct: 350 DFEMAVAKV 358
Score = 205 bits (516), Expect = 2e-51
Identities = 108/212 (50%), Positives = 150/212 (69%), Gaps = 8/212 (3%)
Query: 193 EVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPK 247
++LP V+ + EK+P+ TYE IGGL + I++I+E++ELP+KHPELFE LGI PK
Sbjct: 93 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 152
Query: 248 GVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPA 307
GVLLYGPPGTGKTLLA+AVA+ + FI ++G E++ K+ GE +RE+F A E+AP+
Sbjct: 153 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 212
Query: 308 IIFIDEIDAIAPKREE--VVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
IIF+DEID+I R E G+ E +R + +LL +DG ++ + VI ATNR D LD A
Sbjct: 213 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSA 272
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGM 396
L RPGR DR+IE P+++ R +IL+IH+R M
Sbjct: 273 LLRPGRIDRKIEFPPPNEEARLDILKIHSRKM 304
>gb|AAD53310.1|AF177942_1 (AF177942) katanin p60 [Xenopus laevis]
Length = 486
Score = 228 bits (576), Expect = 2e-58
Identities = 135/307 (43%), Positives = 194/307 (62%), Gaps = 20/307 (6%)
Query: 521 DFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITP 580
D EAL+ R+++ + PN+ WDDI LE+ K+ L+EAV P+ P+ FK GI
Sbjct: 187 DLIEALE-------RDIISQNPNIRWDDIADLEEAKKLLKEAVVLPMWMPEFFK--GIRR 237
Query: 581 P-KGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQA 639
P KGVL+ GPPGTGKTLLAKAVATE + F I + SK+ GESEK +R +F AR
Sbjct: 238 PWKGVLMVGPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFY 297
Query: 640 SPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGL---VENSG----VVVIAATN 692
+P IFIDEID+I RGT+E + + R+ +LL +MDG+ EN V+V+AATN
Sbjct: 298 APTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATN 357
Query: 693 RPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTG 752
P +D AL R R ++ I +P P K R E+ +++ + + LADDV+++ +A +GY+G
Sbjct: 358 FPWDIDEALRR--RLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSG 415
Query: 753 ADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYM 812
ADI VCR+A++ A+RR + L+PEE+ S + + T +DFE+ALKKV SV+
Sbjct: 416 ADITNVCRDASLMAMRRRIEGLTPEEIRNLSRDDM-HMPTTMEDFEMALKKVSKSVSASD 474
Query: 813 MEYYRQF 819
+E Y ++
Sbjct: 475 IEKYEKW 481
Score = 148 bits (371), Expect = 2e-34
Identities = 95/256 (37%), Positives = 148/256 (57%), Gaps = 15/256 (5%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPP-KGVLLYGPPGTGKTLLAKA 265
P + ++DI L+EA + ++E V LP+ PE F+ GI P KGVL+ GPPGTGKTLLAKA
Sbjct: 201 PNIRWDDIADLEEAKKLLKEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKA 258
Query: 266 VANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR-EEV 324
VA E F I+ + SKY GESE+ +R +F+ A AP IFIDEID+I +R
Sbjct: 259 VATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSE 318
Query: 325 VGEVEKRVVSQLLTLMDGLKSRGK-------VIVIAATNRPDALDPALRRPGRFDREIEV 377
E +RV ++LL MDG+ + V+V+AATN P +D ALRR R ++ I +
Sbjct: 319 EHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYI 376
Query: 378 GVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDD--RFDKEKIKKIIEKVSKA 435
+P +GR+E+L+I+ + + + D E + + + D ++ + + +
Sbjct: 377 PLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDASLMAMRRRIEG 436
Query: 436 KSEEEIKDILREDRNL 451
+ EEI+++ R+D ++
Sbjct: 437 LTPEEIRNLSRDDMHM 452
>gi|6754410 katanin p60 (ATPase-containing) subunit A1 [Mus musculus]
>gi|5326894|gb|AAD42087.1|AF153197_1 (AF153197)
lipotransin [Mus musculus]
Length = 491
Score = 228 bits (575), Expect = 2e-58
Identities = 141/332 (42%), Positives = 201/332 (60%), Gaps = 14/332 (4%)
Query: 496 KEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDV 555
++ K E +P V E + K D K + + R+++ + PNV W DI L +
Sbjct: 159 EQSKGREEKNKLPAAVTEP-EANKFDGTGYDKDLVEALERDIISQNPNVRWYDIADLVEA 217
Query: 556 KQELREAVEWPLKYPKAFKRLGITPP-KGVLLYGPPGTGKTLLAKAVATESQANFIAIRG 614
K+ L+EAV P+ P+ FK GI P KGVL+ GPPGTGKTLLAKAVATE + F +
Sbjct: 218 KKLLQEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSS 275
Query: 615 PEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLT 674
+ SK+ GESEK +R +F AR SPA IFIDEID+I RGT+E + + R+ +LL
Sbjct: 276 STLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRMKAELLV 335
Query: 675 EMDGL---VENSG----VVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKV 727
+MDG+ EN V+V+AATN P +D AL R R ++ I +P P K R E+ ++
Sbjct: 336 QMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRI 393
Query: 728 HTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFL 787
R + LADDV+L +A EGY+GADI VCR+A++ A+RR + L+PEE+ S + +
Sbjct: 394 SLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSREAM 453
Query: 788 KSLIVTRKDFEVALKKVKPSVTKYMMEYYRQF 819
+ T +DFE+ALKK+ SV+ +E Y ++
Sbjct: 454 -HMPTTMEDFEMALKKISKSVSAADIERYEKW 484
Score = 143 bits (356), Expect = 1e-32
Identities = 94/252 (37%), Positives = 144/252 (56%), Gaps = 15/252 (5%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPP-KGVLLYGPPGTGKTLLAKA 265
P V + DI L EA + ++E V LP+ PE F+ GI P KGVL+ GPPGTGKTLLAKA
Sbjct: 204 PNVRWYDIADLVEAKKLLQEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKA 261
Query: 266 VANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR-EEV 324
VA E F ++ + SKY GESE+ +R +F+ A +PA IFIDEID+I +R
Sbjct: 262 VATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSE 321
Query: 325 VGEVEKRVVSQLLTLMDGLKSRGK-------VIVIAATNRPDALDPALRRPGRFDREIEV 377
E +R+ ++LL MDG+ + V+V+AATN P +D ALRR R ++ I +
Sbjct: 322 EHEASRRMKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYI 379
Query: 378 GVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDD--RFDKEKIKKIIEKVSKA 435
+P +GR+E+L+I R + + D ++ + ++ D ++ + + +
Sbjct: 380 PLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMRRRIEG 439
Query: 436 KSEEEIKDILRE 447
+ EEI+++ RE
Sbjct: 440 LTPEEIRNLSRE 451
>sp|O42586|PRSB_XENLA 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 10)
(TBP-10) >gi|2648045|emb|CAA71486.1| (Y10460) TBP10
protein [Xenopus laevis]
Length = 404
Score = 228 bits (574), Expect = 3e-58
Identities = 122/279 (43%), Positives = 175/279 (61%), Gaps = 20/279 (7%)
Query: 505 ETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVE 564
ET+P E +K + D E P + DIGGL+ QEL EA+
Sbjct: 127 ETLPTEYDSRVKAMEVD------------------ERPTEQYSDIGGLDKQIQELVEAIV 168
Query: 565 WPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGE 624
P+ + + F+ LGI PPKGVL+YGPPGTGKTLLA+A A +++A F+ + GP+++ ++G+
Sbjct: 169 LPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 228
Query: 625 SEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLTEMDGLVEN 682
K +R+ F A++ +P+IIFIDE+DAI R +E G++ R + +LL ++DG
Sbjct: 229 GAKLVRDAFSLAKEKAPSIIFIDELDAIGNKRFDSEKAGDREVQRTMLELLNQLDGFQPT 288
Query: 683 SGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKE 742
+ V VIAATNR DILDPALLR GR DR I P P+E+AR I ++H+R M ++ DV+ +E
Sbjct: 289 TQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEE 348
Query: 743 LARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
LAR T+ + GA AVC EA + ALRR +L+ E+ E
Sbjct: 349 LARCTDDFNGAQCKAVCVEAGIIALRRGATELTHEDYME 387
Score = 204 bits (514), Expect = 3e-51
Identities = 110/247 (44%), Positives = 159/247 (63%), Gaps = 14/247 (5%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + ++++ T+P TE + +A+EV E P Y DIGGL + I+++
Sbjct: 116 VGVNKDSYLILETLP---------TEYDSRVKAMEVDER--PTEQYSDIGGLDKQIQELV 164
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E + LP+ H E FE LGI+PPKGVL+YGPPGTGKTLLA+A A + A F+ + GP+++
Sbjct: 165 EAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQM 224
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
+ G+ + +R+ F A+E AP+IIFIDE+DAI KR E G+ E +R + +LL +DG
Sbjct: 225 FIGDGAKLVRDAFSLAKEKAPSIIFIDELDAIGNKRFDSEKAGDREVQRTMLELLNQLDG 284
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
+ +V VIAATNR D LDPAL R GR DR+IE +P+++ R I+QIH+R M + PD
Sbjct: 285 FQPTTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDV 344
Query: 403 EKETVIK 409
E + +
Sbjct: 345 NYEELAR 351
>sp|O16368|PRS4_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT 4 >gi|7500175|pir||T31800
hypothetical protein F29G9.5 - Caenorhabditis elegans
>gi|2315358|gb|AAB65906.1| (AF016440) strong similarity
to the AAA family of ATPases [Caenorhabditis elegans]
Length = 443
Score = 227 bits (573), Expect = 4e-58
Identities = 114/252 (45%), Positives = 166/252 (65%), Gaps = 2/252 (0%)
Query: 538 LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLL 597
L + P + D+GGL+ QE++EAVE PL +P+ ++ +GI PPKGV+LYG PGTGKTLL
Sbjct: 179 LEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLL 238
Query: 598 AKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR- 656
AKAVA ++ A F+ I G E++ K++G+ K +RE+FR A + +P+I+FIDEIDA+ R
Sbjct: 239 AKAVANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTKRY 298
Query: 657 -GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPA 715
+ GE+ R + +LL ++DG V V+ ATNR + LDPAL+RPGR DR I P
Sbjct: 299 DSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEFPL 358
Query: 716 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLS 775
PDEK + IF++HT M L +V+L+E + +GADI A+C EA + ALR +++
Sbjct: 359 PDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEAGLLALRERRMRVT 418
Query: 776 PEELEEESEKFL 787
E+ ++ E L
Sbjct: 419 MEDFQKSKENVL 430
Score = 226 bits (570), Expect = 8e-58
Identities = 117/226 (51%), Positives = 156/226 (68%), Gaps = 3/226 (1%)
Query: 196 PQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPP 255
P ++ EK P+ TY D+GGL + I++I+E VELPL HPE +E +GI PPKGV+LYG P
Sbjct: 172 PMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCP 231
Query: 256 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEID 315
GTGKTLLAKAVAN+ +A F+ I G E++ KY G+ + +RE+F+ AEENAP+I+FIDEID
Sbjct: 232 GTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEID 291
Query: 316 AIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFD 372
A+ KR GE E +R + +LL +DG SRG V V+ ATNR ++LDPAL RPGR D
Sbjct: 292 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRID 351
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDD 418
R+IE +PD++ ++ I QIHT M + + E I A EL D
Sbjct: 352 RKIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGAD 397
>pir||T48743 probable 26S ATP/ubiquitin-dependent proteinase chain S4 [imported]
- Neurospora crassa >gi|7635793|emb|CAB88559.1|
(AL353819) probable 26S ATP/ubiquitin-dependent
proteinase chain S4 [Neurospora crassa]
Length = 471
Score = 227 bits (572), Expect = 5e-58
Identities = 135/379 (35%), Positives = 213/379 (55%), Gaps = 16/379 (4%)
Query: 414 LEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDK-LLDELAEVTH 472
+E +R K K K + SE E D + ++R+ ++R + +L+EL + H
Sbjct: 95 VENQERLRKAKTAK---DSNAPASELESSDRMADERSRVDDMRGSPMGVGVLEELIDDDH 151
Query: 473 GFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPS 532
V ++ + V + + + + P A + + D +P+
Sbjct: 152 AIV----SSTSGPEYYVSIMSFVDKDLLEPGASVLLHHKSVSIVGVLTDD------TDPA 201
Query: 533 ALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGT 592
L + P + DIGGLE QE+RE+VE PL +P+ ++ +GI PPKGV+LYG PGT
Sbjct: 202 VSVMKLDKAPTESYADIGGLEQQIQEVRESVELPLLHPELYEEMGIKPPKGVILYGAPGT 261
Query: 593 GKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAI 652
GKTLLAKAVA ++ A F+ I G E++ K++G+ + +R++F+ A + +P+I+FIDEIDAI
Sbjct: 262 GKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLVRQLFQVAAENAPSIVFIDEIDAI 321
Query: 653 APAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRL 710
R T+ GE+ R + +LL ++DG + V VI ATN+ + LDPAL+RPGR DR
Sbjct: 322 GTKRYDSTSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIESLDPALIRPGRIDRK 381
Query: 711 ILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRA 770
IL PD+ + +IF +HT M L +DVDL+E + + +GADI A+C EA + ALR
Sbjct: 382 ILFENPDQNTKRKIFTLHTSKMSLNEDVDLEEFIAQKDDLSGADIKAICSEAGLMALRER 441
Query: 771 VAKLSPEELEEESEKFLKS 789
++ + E+ L++
Sbjct: 442 RMRVQMADFRAARERVLRT 460
Score = 213 bits (538), Expect = 5e-54
Identities = 111/226 (49%), Positives = 153/226 (67%), Gaps = 3/226 (1%)
Query: 196 PQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPP 255
P ++ +K P +Y DIGGL++ I+++RE VELPL HPEL+E +GI+PPKGV+LYG P
Sbjct: 200 PAVSVMKLDKAPTESYADIGGLEQQIQEVRESVELPLLHPELYEEMGIKPPKGVILYGAP 259
Query: 256 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEID 315
GTGKTLLAKAVAN+ +A F+ I G E++ KY G+ +R++F+ A ENAP+I+FIDEID
Sbjct: 260 GTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLVRQLFQVAAENAPSIVFIDEID 319
Query: 316 AIAPKREEVV--GEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFD 372
AI KR + GE E +R + +LL +DG RG V VI ATN+ ++LDPAL RPGR D
Sbjct: 320 AIGTKRYDSTSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIESLDPALIRPGRID 379
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDD 418
R+I PD+ +++I +HT M + D + E I +L D
Sbjct: 380 RKILFENPDQNTKRKIFTLHTSKMSLNEDVDLEEFIAQKDDLSGAD 425
>pir||T41420 26S proteinase regulatory subunit 6b homolog - fission yeast
(Schizosaccharomyces pombe) >gi|3687465|emb|CAA21189.1|
(AL031798) 26s protease regulatory subunit 6b homolog
[Schizosaccharomyces pombe]
Length = 389
Score = 226 bits (571), Expect = 6e-58
Identities = 148/388 (38%), Positives = 221/388 (56%), Gaps = 35/388 (9%)
Query: 409 KALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELA 468
+ L+ L+ + F KE K + ++ +A +EE+K I + L I + ID+ +
Sbjct: 18 RQLEMLDLQEGFIKEDCKSLKRELIRA--QEEVKRI--QSVPLVIGQFLEAIDQNTAIVG 73
Query: 469 EVT-HGFVGADLAALARE----AAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFY 523
T +V L+ L RE +A V L+R N + +P E + + + D
Sbjct: 74 STTGSNYVVRILSTLDRELLKPSASVALQR-----HSNALVDILPPEADSSISMLRPD-- 126
Query: 524 EALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKG 583
E P+V + D+GGL+ KQE+REAVE PL ++++GI PP+G
Sbjct: 127 ----------------ERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRG 170
Query: 584 VLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAI 643
VLLYGPPGTGKT+L KAVA + ANFI + G E + K++GE + +R++FR AR+ +PAI
Sbjct: 171 VLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAI 230
Query: 644 IFIDEIDAIAPARGTAE--GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPAL 701
IFIDEIDAIA R A+ ++ RI+ +LLT+MDG + + V VI ATNR D LDPAL
Sbjct: 231 IFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPAL 290
Query: 702 LRPGRFDRLILVPA-PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCR 760
LRPGR DR I P+ D + R +F+ T M L+ +VDL R + +GA IAA+ +
Sbjct: 291 LRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQ 350
Query: 761 EAAMNALRRAVAKLSPEELEEESEKFLK 788
+A + A+R++ + ++EE + +K
Sbjct: 351 DAGLLAVRKSRGVILQSDIEEAYARAVK 378
Score = 204 bits (514), Expect = 3e-51
Identities = 109/229 (47%), Positives = 149/229 (64%), Gaps = 9/229 (3%)
Query: 189 NTEVEVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGI 243
N V++LP + +R ++ P+V+Y D+GGL +++RE VELPL +L+ ++GI
Sbjct: 106 NALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGI 165
Query: 244 EPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEE 303
+PP+GVLLYGPPGTGKT+L KAVAN A FI + G E + KY GE +R++F+ A E
Sbjct: 166 DPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARE 225
Query: 304 NAPAIIFIDEIDAIAPKREEVVGEVEK---RVVSQLLTLMDGLKSRGKVIVIAATNRPDA 360
NAPAIIFIDEIDAIA KR + ++ R++ +LLT MDG V VI ATNR D
Sbjct: 226 NAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADT 285
Query: 361 LDPALRRPGRFDREIEV-GVPDKQGRKEILQIHTRGMPIEPDFEKETVI 408
LDPAL RPGR DR+IE D++ R+ + Q T M + P+ + +T I
Sbjct: 286 LDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFI 334
>sp|Q41365|PRS7_SPIOL 26S PROTEASE REGULATORY SUBUNIT 7 (26S PROTEASOME SUBUNIT 7)
>gi|7435732|pir||T09104 26S proteasome ATPase chain -
spinach >gi|1395191|dbj|BAA13021.1| (D86121) 26S
proteasome ATPase subunit [Spinacia oleracea]
Length = 426
Score = 226 bits (570), Expect = 8e-58
Identities = 117/251 (46%), Positives = 160/251 (63%), Gaps = 14/251 (5%)
Query: 162 EAMSVGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAI 221
E M VG K+ + +P ++ P + E+ P+VTY D+GG KE I
Sbjct: 129 EGMRVGVDRNKYQIQIPLPP-----------KIDPSVTMMTVEEKPDVTYNDVGGCKEQI 177
Query: 222 EKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPE 281
EK+RE+VELP+ HPE F +LGI+PPKGVL YGPPGTGKTLLA+AVAN +A FI + G E
Sbjct: 178 EKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237
Query: 282 IMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLT 338
++ KY GE +RE+F+ A I+F DE+DAI R + V G+ E +R + +++
Sbjct: 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297
Query: 339 LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPI 398
+DG +RG + V+ ATNRPD LDPAL RPGR DR++E G+PD +GR +I +IHTR M
Sbjct: 298 QLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNC 357
Query: 399 EPDFEKETVIK 409
E D E + +
Sbjct: 358 ERDIRFELLAR 368
Score = 224 bits (564), Expect = 4e-57
Identities = 124/301 (41%), Positives = 176/301 (58%), Gaps = 28/301 (9%)
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
++PS + E P+V ++D+GG ++ +++RE VE P+ +P+ F +LGI PPKGVL YG
Sbjct: 150 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYG 209
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PPGTGKTLLA+AVA + A FI + G E++ K+VGE + +RE+F+ AR I+F DE
Sbjct: 210 PPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDE 269
Query: 649 IDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGR 706
+DAI AR G+ R + +++ ++DG + V+ ATNRPD LDPALLRPGR
Sbjct: 270 VDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGR 329
Query: 707 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNA 766
DR + PD + R +IFK+HTR M D+ + LAR TGADI +VC EA M A
Sbjct: 330 LDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYA 389
Query: 767 LRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRM 826
+R + VT KDF A+ KV ++ Y++F + K M
Sbjct: 390 IR------------------ARRKTVTEKDFLDAVNKV--------IKGYQKFSATPKYM 423
Query: 827 V 827
V
Sbjct: 424 V 424
>sp|P73179|FTH2_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 2 >gi|7446575|pir||S75291 cell
division protein ftsH-3 - Synechocystis sp. (strain PCC
6803) >gi|1652282|dbj|BAA17205.1| (D90904) cell division
protein FtsH [Synechocystis sp.]
Length = 665
Score = 226 bits (570), Expect = 8e-58
Identities = 116/249 (46%), Positives = 165/249 (65%), Gaps = 3/249 (1%)
Query: 544 VHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
V +DD+ G+++ K+EL+E V + LK P+ F +G P+GVLL GPPGTGKTLLAKA+A
Sbjct: 208 VGFDDVAGIDEAKEELQEVVTF-LKQPEKFTAIGAKIPRGVLLIGPPGTGKTLLAKAIAG 266
Query: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEK 663
E+ F +I G E + +VG R+R++F+KA++ +P ++FIDEIDA+ RG G
Sbjct: 267 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLVFIDEIDAVGRQRGVGYGGG 326
Query: 664 VTDR--IINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 721
+R +NQLLTEMDG NSG++VIAATNRPD+LD ALLRPGRFDR + V PD + R
Sbjct: 327 NDEREQTLNQLLTEMDGFEGNSGIIVIAATNRPDVLDLALLRPGRFDRQVTVDYPDVQGR 386
Query: 722 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
I +H + L ++V L +ARRT G+TGAD+A V EAA+ RR ++ E+ +
Sbjct: 387 ELILAIHAQNKKLHEEVQLAAIARRTPGFTGADLANVLNEAAIFTARRRKEAITMAEVND 446
Query: 782 ESEKFLKSL 790
++ + +
Sbjct: 447 AIDRVVAGM 455
Score = 191 bits (480), Expect = 3e-47
Identities = 105/252 (41%), Positives = 153/252 (60%), Gaps = 11/252 (4%)
Query: 168 FGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKI-------PEVTYEDIGGLKEA 220
+G L ++V I G+V + QA+ + K V ++D+ G+ EA
Sbjct: 160 YGLLTNLLVVAILIGLVVMVVRRSANASGQAMSFGKSKARFQMEAKTGVGFDDVAGIDEA 219
Query: 221 IEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGP 280
E+++E+V LK PE F +G + P+GVLL GPPGTGKTLLAKA+A EA F +I+G
Sbjct: 220 KEELQEVVTF-LKQPEKFTAIGAKIPRGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGS 278
Query: 281 EIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVG---EVEKRVVSQLL 337
E + + G R+R++FK+A+ENAP ++FIDEIDA+ +R G + ++ ++QLL
Sbjct: 279 EFVEMFVGVGASRVRDLFKKAKENAPCLVFIDEIDAVGRQRGVGYGGGNDEREQTLNQLL 338
Query: 338 TLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMP 397
T MDG + +IVIAATNRPD LD AL RPGRFDR++ V PD QGR+ IL IH +
Sbjct: 339 TEMDGFEGNSGIIVIAATNRPDVLDLALLRPGRFDRQVTVDYPDVQGRELILAIHAQNKK 398
Query: 398 IEPDFEKETVIK 409
+ + + + +
Sbjct: 399 LHEEVQLAAIAR 410
>gi|11467752 hypothetical chloroplast RF25 [Guillardia theta]
>gi|6016057|sp|O78516|FTSH_GUITH CELL DIVISION PROTEIN
FTSH HOMOLOG >gi|3603077|gb|AAC35738.1| (AF041468)
hypothetical chloroplast RF25 [Guillardia theta]
Length = 631
Score = 226 bits (570), Expect = 8e-58
Identities = 118/280 (42%), Positives = 180/280 (64%), Gaps = 8/280 (2%)
Query: 544 VHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
V ++D+ G+++ K+E E V + LK P+ F +G PKGVLL GPPGTGKTLLAKA+A
Sbjct: 170 VTFNDVAGVDEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 228
Query: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA--EG 661
E+ F +I G E + +VG R+R++F+KA++ SP I+FIDEIDA+ RGT G
Sbjct: 229 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENSPCIVFIDEIDAVGRQRGTGIGGG 288
Query: 662 EKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 721
++ +NQLLTEMDG N+G+++IAATNR D+LD ALLRPGRFDR + V PD K R
Sbjct: 289 NDEREQTLNQLLTEMDGFEGNTGIIIIAATNRVDVLDAALLRPGRFDRQVTVDVPDVKGR 348
Query: 722 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
EI VH R L + L+ +A+RT G++GAD+A + EAA+ RR +++ E++
Sbjct: 349 LEILNVHARNKKLDLSISLELIAKRTPGFSGADLANLLNEAAILTARRRKKQITISEIDA 408
Query: 782 ESEKFL-----KSLIVTRKDFEVALKKVKPSVTKYMMEYY 816
++ + K+L+ ++ +A +V ++ +++++
Sbjct: 409 SIDRVIAGMEGKALVDSKTKRLIAYHEVGHAIIGTLLKHH 448
Score = 194 bits (488), Expect = 3e-48
Identities = 99/204 (48%), Positives = 136/204 (66%), Gaps = 4/204 (1%)
Query: 209 VTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVAN 268
VT+ D+ G+ EA E+ E+V LK PE F +G + PKGVLL GPPGTGKTLLAKA+A
Sbjct: 170 VTFNDVAGVDEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 228
Query: 269 EANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVG-- 326
EA F +I+G E + + G R+R++FK+A+EN+P I+FIDEIDA+ +R +G
Sbjct: 229 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENSPCIVFIDEIDAVGRQRGTGIGGG 288
Query: 327 -EVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGR 385
+ ++ ++QLLT MDG + +I+IAATNR D LD AL RPGRFDR++ V VPD +GR
Sbjct: 289 NDEREQTLNQLLTEMDGFEGNTGIIIIAATNRVDVLDAALLRPGRFDRQVTVDVPDVKGR 348
Query: 386 KEILQIHTRGMPIEPDFEKETVIK 409
EIL +H R ++ E + K
Sbjct: 349 LEILNVHARNKKLDLSISLELIAK 372
>gb|AAF91243.1|AF227499_1 (AF227499) proteasome regulatory ATPase subunit 1 [Trypanosoma
brucei]
Length = 437
Score = 226 bits (570), Expect = 8e-58
Identities = 112/215 (52%), Positives = 150/215 (69%), Gaps = 1/215 (0%)
Query: 196 PQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPP 255
P ++ E+ P+VTY D+GG KE I++IRE+VELPL +PE + +LGI+PPKGVLLYGPP
Sbjct: 165 PSVSMMQVEEKPDVTYNDVGGAKEQIDRIREVVELPLTNPEKYTQLGIDPPKGVLLYGPP 224
Query: 256 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEID 315
GTGKTLLAKAVAN +A FI + G E++ +Y GE +REIF+ A AIIF DE+D
Sbjct: 225 GTGKTLLAKAVANRTDATFIRVIGSELVQRYIGEGARMIREIFQLARTKKAAIIFFDEVD 284
Query: 316 AIAPKREEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDRE 374
A+ R G+ E +R + +++ MDG SRG + VI ATNRPD LDPAL RPGR DR+
Sbjct: 285 AVGGARGGGDGDDEIQRTMLEMVNQMDGFDSRGNIKVIMATNRPDTLDPALTRPGRMDRK 344
Query: 375 IEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIK 409
+EVG+PD +GR +IL+IH + + E E + +
Sbjct: 345 LEVGLPDLEGRTKILRIHAKSLSCEKAIRFELIAR 379
Score = 225 bits (567), Expect = 2e-57
Identities = 127/355 (35%), Positives = 200/355 (55%), Gaps = 28/355 (7%)
Query: 442 KDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKIN 501
++++R + +L++ T++I+K D+ A R+ A V++
Sbjct: 88 QEVMRSENSLHVARCTRIINKGQDD----------AKYVVAIRDTAKYVVKL-------- 129
Query: 502 PEAETIPREVLEE-LKVTKADFYEALKM-------VEPSALREVLIEVPNVHWDDIGGLE 553
+ R+ +EE ++V Y ++ + V+PS + E P+V ++D+GG +
Sbjct: 130 --GNRVARQDIEESMRVGVLVGYSSIHIEIPLPPRVDPSVSMMQVEEKPDVTYNDVGGAK 187
Query: 554 DVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIR 613
+ +RE VE PL P+ + +LGI PPKGVLLYGPPGTGKTLLAKAVA + A FI +
Sbjct: 188 EQIDRIREVVELPLTNPEKYTQLGIDPPKGVLLYGPPGTGKTLLAKAVANRTDATFIRVI 247
Query: 614 GPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLL 673
G E++ +++GE + IREIF+ AR AIIF DE+DA+ ARG +G+ R + +++
Sbjct: 248 GSELVQRYIGEGARMIREIFQLARTKKAAIIFFDEVDAVGGARGGGDGDDEIQRTMLEMV 307
Query: 674 TEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMP 733
+MDG + VI ATNRPD LDPAL RPGR DR + V PD + R +I ++H + +
Sbjct: 308 NQMDGFDSRGNIKVIMATNRPDTLDPALTRPGRMDRKLEVGLPDLEGRTKILRIHAKSLS 367
Query: 734 LADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLK 788
+ + +AR TGAD+ +VC EA M A+R ++ ++ + K +K
Sbjct: 368 CEKAIRFELIARLCPNATGADLRSVCTEAGMFAIRARRKTINEKDFLDAVNKVIK 422
>dbj|BAB17624.1| (AB033535) 26S proteasome regulatory particle triple-A ATPase
subunit1 [Oryza sativa]
Length = 426
Score = 226 bits (570), Expect = 8e-58
Identities = 117/251 (46%), Positives = 160/251 (63%), Gaps = 14/251 (5%)
Query: 162 EAMSVGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAI 221
E M VG K+ + +P ++ P + E+ P+VTY D+GG KE I
Sbjct: 129 EGMRVGVDRNKYQIQIPLPP-----------KIDPSVTMMTVEEKPDVTYNDVGGCKEQI 177
Query: 222 EKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPE 281
EK+RE+VELP+ HPE F +LGI+PPKGVL YGPPGTGKTLLA+AVAN +A FI + G E
Sbjct: 178 EKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237
Query: 282 IMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLT 338
++ KY GE +RE+F+ A I+F DE+DAI R + V G+ E +R + +++
Sbjct: 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297
Query: 339 LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPI 398
+DG +RG + V+ ATNRPD LDPAL RPGR DR++E G+PD +GR +I +IHTR M
Sbjct: 298 QLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNC 357
Query: 399 EPDFEKETVIK 409
E D E + +
Sbjct: 358 ERDIRFELLAR 368
Score = 224 bits (564), Expect = 4e-57
Identities = 124/301 (41%), Positives = 176/301 (58%), Gaps = 28/301 (9%)
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
++PS + E P+V ++D+GG ++ +++RE VE P+ +P+ F +LGI PPKGVL YG
Sbjct: 150 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYG 209
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PPGTGKTLLA+AVA + A FI + G E++ K+VGE + +RE+F+ AR I+F DE
Sbjct: 210 PPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDE 269
Query: 649 IDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGR 706
+DAI AR G+ R + +++ ++DG + V+ ATNRPD LDPALLRPGR
Sbjct: 270 VDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGR 329
Query: 707 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNA 766
DR + PD + R +IFK+HTR M D+ + LAR TGADI +VC EA M A
Sbjct: 330 LDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYA 389
Query: 767 LRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRM 826
+R + VT KDF A+ KV ++ Y++F + K M
Sbjct: 390 IR------------------ARRKTVTEKDFLDAVNKV--------IKGYQKFSATPKYM 423
Query: 827 V 827
V
Sbjct: 424 V 424
>gi|4506213 proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Homo
sapiens] >gi|2136322|pir||S60343 Trip1 protein - human
>gi|695370|gb|AAC41735.1| (L38810) thyroid receptor
interactor [Homo sapiens] >gi|1094810|prf||2106382A
thyroid hormone receptor-interacting protein [Homo
sapiens]
Length = 406
Score = 226 bits (569), Expect = 1e-57
Identities = 138/369 (37%), Positives = 217/369 (58%), Gaps = 32/369 (8%)
Query: 445 LREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGK--INP 502
L+ RN + + +L+ + L L E +VG + A+ ++ +V ++ EGK ++
Sbjct: 45 LQAQRN-ELNAKVRLLREELQLLQE-QGSYVGEVVRAMDKKKVLV---KVHPEGKFVVDV 99
Query: 503 EAETIPREVLEELKVT-KADFYEALKM----VEPSALREVLIEVPNVHWDDIGGLEDVKQ 557
+ +V +V + D Y K+ V+P ++ +VP+ ++ IGGL+ +
Sbjct: 100 DKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIK 159
Query: 558 ELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEV 617
E++E +E P+K+P+ F+ LGI PKGVLLYGPPGTGKTLLA+AVA + FI + G E+
Sbjct: 160 EIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 219
Query: 618 LSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR--GTAEGEKVTDRIINQLLTE 675
+ K++GE + +RE+F AR+ +P+IIF+DEID+I +R G + G R + +LL +
Sbjct: 220 VQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGSSEVQRQMLELLNQ 279
Query: 676 MDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLA 735
+DG + VI ATNR D+LD ALLRPGR DR I P P+E+AR +I K+H+R M L
Sbjct: 280 LDGFEATKNIKVIMATNRIDMLDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT 339
Query: 736 DDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRK 795
++L+++A G +GA++ VC EA M ALR + + VT++
Sbjct: 340 RGINLRKIAELMPGASGAEVKGVCTEAGMYALRE------------------RRVHVTQE 381
Query: 796 DFEVALKKV 804
DFE+A+ KV
Sbjct: 382 DFEMAVAKV 390
Score = 204 bits (514), Expect = 3e-51
Identities = 107/213 (50%), Positives = 151/213 (70%), Gaps = 10/213 (4%)
Query: 193 EVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPK 247
++LP V+ + EK+P+ TYE IGGL + I++I+E++ELP+KHPELFE LGI PK
Sbjct: 125 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 184
Query: 248 GVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPA 307
GVLLYGPPGTGKTLLA+AVA+ + FI ++G E++ K+ GE +RE+F A E+AP+
Sbjct: 185 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 244
Query: 308 IIFIDEIDAIAPKREE----VVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDP 363
IIF+DEID+I R E EV+++++ +LL +DG ++ + VI ATNR D LD
Sbjct: 245 IIFMDEIDSIGSSRLEGGSGGSSEVQRQML-ELLNQLDGFEATKNIKVIMATNRIDMLDS 303
Query: 364 ALRRPGRFDREIEVGVPDKQGRKEILQIHTRGM 396
AL RPGR DR+IE P+++ R +IL+IH+R M
Sbjct: 304 ALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM 336
>sp|P46470|PRS8_XENLA 26S PROTEASE REGULATORY SUBUNIT 8 (SUG1 HOMOLOG) (XSUG1)
>gi|1877414|emb|CAA57512.1| (X81986) XSUG1 [Xenopus
laevis]
Length = 461
Score = 226 bits (569), Expect = 1e-57
Identities = 138/368 (37%), Positives = 217/368 (58%), Gaps = 31/368 (8%)
Query: 445 LREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGK--INP 502
L+ RN + + +L+ + L L E +VG + A+ ++ +V ++ EGK ++
Sbjct: 40 LQAQRN-ELNAKVRLLREELQLLQE-QGSYVGEVVRAMDKKKVLV---KVHPEGKFVVDV 94
Query: 503 EAETIPREVLEELKVT-KADFYEALKM----VEPSALREVLIEVPNVHWDDIGGLEDVKQ 557
+ +V +V + D Y K+ V+P ++ +VP+ ++ IGGL+ +
Sbjct: 95 DKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIK 154
Query: 558 ELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEV 617
E++E +E P+K+P+ F+ LGI PKGVLLYGPPGTGKTLLA+AVA + FI + G E+
Sbjct: 155 EIKEVIELPVKHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 214
Query: 618 LSKWVGESEKRIREIFRKARQASPAIIFIDEIDAI-APARGTAEGEKVTDRIINQLLTEM 676
+ K++GE + +RE+F AR+ +P+IIF+DEID+I + G + G+ R + +LL ++
Sbjct: 215 VQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSRLEGGSGGDSEVQRTMLELLNQL 274
Query: 677 DGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLAD 736
DG + VI ATNR DILD ALLRPGR DR I P P+E+AR +I K+H+R M L
Sbjct: 275 DGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTR 334
Query: 737 DVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKD 796
++L+++A G +GA++ VC EA M ALR + + VT++D
Sbjct: 335 GINLRKIAELMPGASGAEVKGVCTEAGMYALRE------------------RRVHVTQED 376
Query: 797 FEVALKKV 804
FE+A+ KV
Sbjct: 377 FEMAVAKV 384
Score = 202 bits (509), Expect = 1e-50
Identities = 107/212 (50%), Positives = 149/212 (69%), Gaps = 9/212 (4%)
Query: 193 EVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPK 247
++LP V+ + EK+P+ TYE IGGL + I++I+E++ELP+KHPE FE LGI PK
Sbjct: 120 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEHFEALGIAQPK 179
Query: 248 GVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPA 307
GVLLYGPPGTGKTLLA+AVA+ + FI ++G E++ K+ GE +RE+F A E+AP+
Sbjct: 180 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 239
Query: 308 IIFIDEIDAIAPKREEVVG---EVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
IIF+DEID+I + E G EV+ R + +LL +DG ++ + VI ATNR D LD A
Sbjct: 240 IIFMDEIDSIGSRLEGGSGGDSEVQ-RTMLELLNQLDGFEATKNIKVIMATNRIDILDSA 298
Query: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGM 396
L RPGR DR+IE P+++ R +IL+IH+R M
Sbjct: 299 LLRPGRIDRKIEFPPPNEEARLDILKIHSRKM 330
>gb|AAF91246.1|AF227502_1 (AF227502) proteasome regulatory ATPase subunit 4 [Trypanosoma
brucei]
Length = 399
Score = 225 bits (568), Expect = 1e-57
Identities = 145/385 (37%), Positives = 215/385 (55%), Gaps = 18/385 (4%)
Query: 414 LEKDDRFDKEKIKKIIEK-VSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTH 472
L + ++ ++ I K I + S+A+ E K + +R L +++D+L L + H
Sbjct: 11 LSEREQLRQDVIAKTIRRNESRARVREVAKAMEASERELM-----RVVDQL-SALMSIGH 64
Query: 473 GFVGADLAALAREAAMVV----LRRLIKEGK-INPEAETIPREVLEELKVTKADFYEAL- 526
FVG L + E +V R L+ K I PE I V L++T L
Sbjct: 65 -FVGEILHKVDEERFIVQSVSGARHLVGYKKSIKPEKLKIGTRVA--LEITTLTIVRVLP 121
Query: 527 KMVEPSALR-EVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVL 585
+ V+P +V+ N+ + +IGGL++ +++RE VE PL P+ F R+GI+PPKGVL
Sbjct: 122 REVDPQVYNMQVMENEKNISFQEIGGLQEQMRQMREVVELPLTNPELFVRVGISPPKGVL 181
Query: 586 LYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIF 645
LYGPPGTGKTLLAKA+A+ A F+ I ++ K++GES + +RE+F AR P IIF
Sbjct: 182 LYGPPGTGKTLLAKAIASNVDAAFLKIVASSIVDKYIGESARVLREMFAFARDHEPCIIF 241
Query: 646 IDEIDAIAPAR-GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRP 704
IDE+DAI R + ++ R + +LL +MDG + V VI ATNRPD LDPAL+RP
Sbjct: 242 IDEVDAIGGKRIEGSSSDREVQRTLMELLHQMDGFEKLGKVKVIMATNRPDTLDPALMRP 301
Query: 705 GRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAM 764
GR DR I + P+E R ++ K+H + D+D + + +EG+ GAD+ VC EA M
Sbjct: 302 GRLDRKIEIGLPNEAGRLDVLKIHASKITKQGDIDYDSIVKLSEGFNGADLRNVCTEAGM 361
Query: 765 NALRRAVAKLSPEELEEESEKFLKS 789
ALR + E+ + + K S
Sbjct: 362 FALRAGRDYVINEDFNKATRKVADS 386
Score = 221 bits (558), Expect = 2e-56
Identities = 116/234 (49%), Positives = 161/234 (68%), Gaps = 8/234 (3%)
Query: 184 VQITYNTEVEVLPQAVEVRE------EKIPEVTYEDIGGLKEAIEKIREMVELPLKHPEL 237
++IT T V VLP+ V+ + E +++++IGGL+E + ++RE+VELPL +PEL
Sbjct: 109 LEITTLTIVRVLPREVDPQVYNMQVMENEKNISFQEIGGLQEQMRQMREVVELPLTNPEL 168
Query: 238 FERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREI 297
F R+GI PPKGVLLYGPPGTGKTLLAKA+A+ +A F+ I I+ KY GES LRE+
Sbjct: 169 FVRVGISPPKGVLLYGPPGTGKTLLAKAIASNVDAAFLKIVASSIVDKYIGESARVLREM 228
Query: 298 FKEAEENAPAIIFIDEIDAIAPKREEVVGEVE--KRVVSQLLTLMDGLKSRGKVIVIAAT 355
F A ++ P IIFIDE+DAI KR E +R + +LL MDG + GKV VI AT
Sbjct: 229 FAFARDHEPCIIFIDEVDAIGGKRIEGSSSDREVQRTLMELLHQMDGFEKLGKVKVIMAT 288
Query: 356 NRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIK 409
NRPD LDPAL RPGR DR+IE+G+P++ GR ++L+IH + + D + ++++K
Sbjct: 289 NRPDTLDPALMRPGRLDRKIEIGLPNEAGRLDVLKIHASKITKQGDIDYDSIVK 342
>gb|AAB42248.1| (U88170) Contains similarity to Pfam domain: PF00004 (AAA),
Score=322.1, E-value=2.1e-93, N=1 [Caenorhabditis
elegans]
Length = 493
Score = 225 bits (567), Expect = 2e-57
Identities = 117/269 (43%), Positives = 174/269 (64%), Gaps = 6/269 (2%)
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
++ +A+ + + P +DDIGG E QEL+E+VE PL +P+ ++ +GIT PKGV+LYG
Sbjct: 220 IDSNAMGHKVEKTPKETFDDIGGCESQIQELKESVELPLTHPEYYEEMGITAPKGVILYG 279
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PGTGKTLLAKAVA + A FI G +++ K GE + +R+IF+ A++ +P+I+FIDE
Sbjct: 280 EPGTGKTLLAKAVANSTSATFIRATGSDLVQKQSGEGARLVRQIFQMAKEQAPSIVFIDE 339
Query: 649 IDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGR 706
IDA+ R ++ GE+ R + +LL ++DG V +I ATNR D LDPAL+RPGR
Sbjct: 340 IDAVGTKRFDTSSRGEQEVQRTLLELLNQLDGFESRGDVKIIMATNRIDSLDPALIRPGR 399
Query: 707 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNA 766
DR I +P PDEK R +IF +HT GM + V + + + + +GA+I AVC EA M A
Sbjct: 400 IDRKIELPKPDEKTRQKIFTIHTSGMTIQKAVTYENVLGKEKSISGAEIKAVCTEAGMLA 459
Query: 767 LRRAVAKLSPEELEEESEKFLKSLIVTRK 795
LR + ++ EK +KS+++++K
Sbjct: 460 LRAQRKCVGTDDF----EKAVKSVMLSKK 484
Score = 215 bits (543), Expect = 1e-54
Identities = 115/240 (47%), Positives = 161/240 (66%), Gaps = 6/240 (2%)
Query: 178 TIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPEL 237
T+P IV + + ++ A+ + EK P+ T++DIGG + I++++E VELPL HPE
Sbjct: 207 TVPSAIVGVL---DDKIDSNAMGHKVEKTPKETFDDIGGCESQIQELKESVELPLTHPEY 263
Query: 238 FERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREI 297
+E +GI PKGV+LYG PGTGKTLLAKAVAN +A FI G +++ K GE +R+I
Sbjct: 264 YEEMGITAPKGVILYGEPGTGKTLLAKAVANSTSATFIRATGSDLVQKQSGEGARLVRQI 323
Query: 298 FKEAEENAPAIIFIDEIDAIAPKREEVV--GEVE-KRVVSQLLTLMDGLKSRGKVIVIAA 354
F+ A+E AP+I+FIDEIDA+ KR + GE E +R + +LL +DG +SRG V +I A
Sbjct: 324 FQMAKEQAPSIVFIDEIDAVGTKRFDTSSRGEQEVQRTLLELLNQLDGFESRGDVKIIMA 383
Query: 355 TNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKEL 414
TNR D+LDPAL RPGR DR+IE+ PD++ R++I IHT GM I+ E V+ K +
Sbjct: 384 TNRIDSLDPALIRPGRIDRKIELPKPDEKTRQKIFTIHTSGMTIQKAVTYENVLGKEKSI 443
>pir||D70198 cell division protein (ftsH) homolog - Lyme disease spirochete
>gi|2688712|gb|AAC67120.1| (AE001177) cell division
protein (ftsH) [Borrelia burgdorferi]
Length = 639
Score = 225 bits (567), Expect = 2e-57
Identities = 124/280 (44%), Positives = 179/280 (63%), Gaps = 9/280 (3%)
Query: 544 VHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
+ + D+ G E+VKQELRE VE+ LK PK F+++G PKGVLL G PGTGKTLLAKAVA
Sbjct: 169 ITFKDVAGQEEVKQELREVVEF-LKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAG 227
Query: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA--EG 661
E+ +F + G + + +VG R+R++F AR+ SP IIFIDE+DA+ +RG G
Sbjct: 228 EAGVSFFHMSGSDFVEMFVGVGASRVRDLFDNARKNSPCIIFIDELDAVGRSRGAGLGGG 287
Query: 662 EKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 721
++ +NQLL EMDG ++ V+V+AATNRPD+LD ALLRPGRFDR + V PD K R
Sbjct: 288 HDEREQTLNQLLVEMDGFGTHTNVIVMAATNRPDVLDSALLRPGRFDRQVTVSLPDIKER 347
Query: 722 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
I +H+ L+ D++L+ +AR T G +GAD+A + E A+ A R ++ +++EE
Sbjct: 348 EAILNIHSLKTKLSKDINLQVIARATPGASGADLANLINEGALIAARNNQDEILMKDMEE 407
Query: 782 ESEKFL-----KSLIVT-RKDFEVALKKVKPSVTKYMMEY 815
+K L KS+ +T R+ E A + ++ Y +E+
Sbjct: 408 ARDKILMGVAKKSMTITDRQKLETAYHEAGHALLHYYLEH 447
Score = 182 bits (457), Expect = 1e-44
Identities = 92/206 (44%), Positives = 137/206 (65%), Gaps = 4/206 (1%)
Query: 208 EVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVA 267
++T++D+ G +E +++RE+VE LK+P+ FE++G + PKGVLL G PGTGKTLLAKAVA
Sbjct: 168 KITFKDVAGQEEVKQELREVVEF-LKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVA 226
Query: 268 NEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVG- 326
EA F ++G + + + G R+R++F A +N+P IIFIDE+DA+ R +G
Sbjct: 227 GEAGVSFFHMSGSDFVEMFVGVGASRVRDLFDNARKNSPCIIFIDELDAVGRSRGAGLGG 286
Query: 327 --EVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQG 384
+ ++ ++QLL MDG + VIV+AATNRPD LD AL RPGRFDR++ V +PD +
Sbjct: 287 GHDEREQTLNQLLVEMDGFGTHTNVIVMAATNRPDVLDSALLRPGRFDRQVTVSLPDIKE 346
Query: 385 RKEILQIHTRGMPIEPDFEKETVIKA 410
R+ IL IH+ + D + + +A
Sbjct: 347 REAILNIHSLKTKLSKDINLQVIARA 372
>gb|AAG38539.1|AF309805_4 (AF309805) putative 26S protease regulatory subunit 4 [Pneumocystis
carinii f. sp. carinii]
Length = 437
Score = 225 bits (567), Expect = 2e-57
Identities = 117/265 (44%), Positives = 170/265 (64%), Gaps = 4/265 (1%)
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
++P L + P + DIGGLE QE++E VE PL +P+ ++ +GI PPKGV+LYG
Sbjct: 162 IDPMVSVMKLDKAPTESYADIGGLESQIQEIKETVELPLTHPELYEEIGIRPPKGVILYG 221
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PGTGKTLLAKAVA ++ A F+ I G E++ K++G+ K +RE+F+ A+ SP+I+FIDE
Sbjct: 222 EPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPKFVRELFQTAQDNSPSIVFIDE 281
Query: 649 IDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGR 706
IDAI R T+ GE+ R + +LL ++DG + V VI ATNR + LDPAL+RPGR
Sbjct: 282 IDAIGTKRYDSTSSGEREIQRTMLELLNQLDGFDDRGDVKVIMATNRINDLDPALIRPGR 341
Query: 707 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGAD--IAAVCREAAM 764
DR IL PD+ + +IF++HT M L DDV ++E + +GAD + A+C EA +
Sbjct: 342 MDRKILFETPDQNTKRKIFQIHTSKMNLGDDVLIEEFITAKDEMSGADVKVIAICTEAGL 401
Query: 765 NALRRAVAKLSPEELEEESEKFLKS 789
ALR ++ ++ + E LK+
Sbjct: 402 LALRERRMRVVADDFRKAKEHVLKT 426
Score = 216 bits (545), Expect = 7e-55
Identities = 112/229 (48%), Positives = 153/229 (65%), Gaps = 3/229 (1%)
Query: 193 EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLY 252
++ P ++ +K P +Y DIGGL+ I++I+E VELPL HPEL+E +GI PPKGV+LY
Sbjct: 161 DIDPMVSVMKLDKAPTESYADIGGLESQIQEIKETVELPLTHPELYEEIGIRPPKGVILY 220
Query: 253 GPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFID 312
G PGTGKTLLAKAVAN+ +A F+ I G E++ KY G+ + +RE+F+ A++N+P+I+FID
Sbjct: 221 GEPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPKFVRELFQTAQDNSPSIVFID 280
Query: 313 EIDAIAPKREEVVGEVEK---RVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPG 369
EIDAI KR + E+ R + +LL +DG RG V VI ATNR + LDPAL RPG
Sbjct: 281 EIDAIGTKRYDSTSSGEREIQRTMLELLNQLDGFDDRGDVKVIMATNRINDLDPALIRPG 340
Query: 370 RFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDD 418
R DR+I PD+ +++I QIHT M + D E I A E+ D
Sbjct: 341 RMDRKILFETPDQNTKRKIFQIHTSKMNLGDDVLIEEFITAKDEMSGAD 389
>gb|AAF46146.1| (AE003437) Rpt4 gene product [Drosophila melanogaster]
Length = 397
Score = 224 bits (566), Expect = 2e-57
Identities = 144/365 (39%), Positives = 205/365 (55%), Gaps = 27/365 (7%)
Query: 421 DKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTH--GFVGAD 478
D ++K + E K +EI+ L+E R I+ TKL DK ++L + VG
Sbjct: 10 DNLRVKALSEYRKKLLEHKEIEGRLKEKRE-EIKDLTKLYDKSENDLKALQSVGQIVGEV 68
Query: 479 LAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVL 538
L L + + I + P R L++ K+ K+ AL M + +R +
Sbjct: 69 LKQLTED-------KFIVKATNGPRYVVGCRRQLDKAKL-KSGTRVALDMTTLTIMRYLP 120
Query: 539 IEVP------------NVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLL 586
EV +V + IGGL D +ELRE +E PL P+ F R+GITPPKG LL
Sbjct: 121 REVDPLVYNMSHEDPGDVTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCLL 180
Query: 587 YGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFI 646
YGPPGTGKTLLA+AVA++ ANF+ + ++ K++GES + IRE+F AR P IIF+
Sbjct: 181 YGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFM 240
Query: 647 DEIDAIAPAR---GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLR 703
DEIDAI R GT+ ++ R + +LL +MDG V +I ATNRPD LDPALLR
Sbjct: 241 DEIDAIGGRRFSEGTSADREI-QRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 299
Query: 704 PGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAA 763
PGR DR I +P P+E+AR EI K+H + ++D + + + ++ + GAD+ VC EA
Sbjct: 300 PGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDNFNGADLRNVCTEAG 359
Query: 764 MNALR 768
+ A+R
Sbjct: 360 LFAIR 364
Score = 211 bits (531), Expect = 3e-53
Identities = 115/259 (44%), Positives = 163/259 (62%), Gaps = 9/259 (3%)
Query: 193 EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLY 252
EV P + E +VTY IGGL + I ++RE++ELPL +PELF R+GI PPKG LLY
Sbjct: 122 EVDPLVYNMSHEDPGDVTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCLLY 181
Query: 253 GPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFID 312
GPPGTGKTLLA+AVA++ +A F+ + I+ KY GES +RE+F A ++ P IIF+D
Sbjct: 182 GPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMD 241
Query: 313 EIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPG 369
EIDAI +R E + E +R + +LL MDG S G+V +I ATNRPD LDPAL RPG
Sbjct: 242 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPG 301
Query: 370 RFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKII 429
R DR+IE+ +P++Q R EIL+IH + + + E ++K D F+ ++ +
Sbjct: 302 RLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKL------SDNFNGADLRNVC 355
Query: 430 EKVSKAKSEEEIKDILRED 448
+ E + +++ED
Sbjct: 356 TEAGLFAIRAEREYVIQED 374
>sp|O64982|PRS7_PRUPE 26S PROTEASE REGULATORY SUBUNIT 7 (26S PROTEASOME SUBUNIT 7)
>gi|3172331|gb|AAC18523.1| (AF041258) 26S proteasome
subunit 7 [Prunus persica]
Length = 425
Score = 224 bits (565), Expect = 3e-57
Identities = 124/301 (41%), Positives = 177/301 (58%), Gaps = 28/301 (9%)
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
++PS + E P+V ++D+GG ++ +++RE VE P+ +P+ F +LGI PPKGVL YG
Sbjct: 149 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYG 208
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PPGTGKTLLA+AVA + A FI + G E++ K+VGE + +RE+F+ AR I+F DE
Sbjct: 209 PPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDE 268
Query: 649 IDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGR 706
+DAI AR G+ R + +++ ++DG + V+ ATNRPD LDPALLRPGR
Sbjct: 269 VDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGR 328
Query: 707 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNA 766
DR + PD ++R +IFK+HTR M D+ + LAR TGADI +VC EA M A
Sbjct: 329 LDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYA 388
Query: 767 LRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRM 826
+R + VT KDF A+ KV ++ Y++F + K M
Sbjct: 389 IR------------------ARRKTVTEKDFLDAVNKV--------IKGYQKFSATPKYM 422
Query: 827 V 827
V
Sbjct: 423 V 423
Score = 224 bits (564), Expect = 4e-57
Identities = 116/251 (46%), Positives = 159/251 (63%), Gaps = 14/251 (5%)
Query: 162 EAMSVGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAI 221
E M VG K+ + +P ++ P + E+ P+VTY D+GG KE I
Sbjct: 128 EGMRVGVDRNKYQIQIPLPP-----------KIDPSVTMMTVEEKPDVTYNDVGGCKEQI 176
Query: 222 EKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPE 281
EK+RE+VELP+ HPE F +LGI+PPKGVL YGPPGTGKTLLA+AVAN +A FI + G E
Sbjct: 177 EKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 236
Query: 282 IMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLT 338
++ KY GE +RE+F+ A I+F DE+DAI R + V G+ E +R + +++
Sbjct: 237 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 296
Query: 339 LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPI 398
+DG +RG + V+ ATNRPD LDPAL RPGR DR++E G+PD + R +I +IHTR M
Sbjct: 297 QLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC 356
Query: 399 EPDFEKETVIK 409
E D E + +
Sbjct: 357 ERDIRFELLAR 367
>gb|AAF02852.1|AC009324_1 (AC009324) 26S proteasome ATPase subunit [Arabidopsis thaliana]
>gi|10645345|gb|AAG21465.1|AC024260_8 (AC024260) 26S
proteasome ATPase subunit; 3861-6264 [Arabidopsis
thaliana]
Length = 426
Score = 224 bits (565), Expect = 3e-57
Identities = 124/301 (41%), Positives = 177/301 (58%), Gaps = 28/301 (9%)
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
++PS + E P+V ++D+GG ++ +++RE VE P+ +P+ F +LGI PPKGVL YG
Sbjct: 150 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYG 209
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PPGTGKTLLA+AVA + A FI + G E++ K+VGE + +RE+F+ AR I+F DE
Sbjct: 210 PPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDE 269
Query: 649 IDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGR 706
+DAI AR G+ R + +++ ++DG + V+ ATNRPD LDPALLRPGR
Sbjct: 270 VDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGR 329
Query: 707 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNA 766
DR + PD ++R +IFK+HTR M D+ + LAR TGADI +VC EA M A
Sbjct: 330 LDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYA 389
Query: 767 LRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRM 826
+R + VT KDF A+ KV ++ Y++F + K M
Sbjct: 390 IR------------------ARRKTVTEKDFLDAVNKV--------IKGYQKFSATPKYM 423
Query: 827 V 827
V
Sbjct: 424 V 424
Score = 224 bits (564), Expect = 4e-57
Identities = 116/251 (46%), Positives = 159/251 (63%), Gaps = 14/251 (5%)
Query: 162 EAMSVGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAI 221
E M VG K+ + +P ++ P + E+ P+VTY D+GG KE I
Sbjct: 129 EGMRVGVDRNKYQIQIPLPP-----------KIDPSVTMMTVEEKPDVTYNDVGGCKEQI 177
Query: 222 EKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPE 281
EK+RE+VELP+ HPE F +LGI+PPKGVL YGPPGTGKTLLA+AVAN +A FI + G E
Sbjct: 178 EKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237
Query: 282 IMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLT 338
++ KY GE +RE+F+ A I+F DE+DAI R + V G+ E +R + +++
Sbjct: 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297
Query: 339 LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPI 398
+DG +RG + V+ ATNRPD LDPAL RPGR DR++E G+PD + R +I +IHTR M
Sbjct: 298 QLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC 357
Query: 399 EPDFEKETVIK 409
E D E + +
Sbjct: 358 ERDIRFELLAR 368
>pir||S51042 tat-binding protein homolog - malaria parasite (Plasmodium
falciparum)
Length = 435
Score = 224 bits (564), Expect = 4e-57
Identities = 137/387 (35%), Positives = 216/387 (55%), Gaps = 30/387 (7%)
Query: 431 KVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLD--ELAEVTHGFVGADLAALAREAAM 488
K S A +EE+++ ++ L IE +I+K L + E + A + L E
Sbjct: 36 KNSSALNEEQVQSGIKRYYELKIEEYESIINKKLQNKKRLEAQRNELNARVRELCDEIQY 95
Query: 489 VV-----LRRLIKEG-------KINPEAETIPREVLEELKVTKA----------DFYEAL 526
++ + ++K KINPE + + ++ + ++ D Y+
Sbjct: 96 LLEAASYVGEIVKPMGKNKVLVKINPEGKYVV-DIARHINISHCTPNTRVALYNDSYKLH 154
Query: 527 KM----VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPK 582
K+ V+P + +VP+ ++ +GGL+ +E++E +E P+K+P+ F+ LGI+ PK
Sbjct: 155 KILPSKVDPLVSLMKVEKVPDSTYEMVGGLDQQVKEVKEVIELPVKHPEIFESLGISQPK 214
Query: 583 GVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPA 642
GVLLYGPPGTGKTLLA+AVA + FI + G E++ K++GE + +RE+F AR+ +P+
Sbjct: 215 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 274
Query: 643 IIFIDEIDAIAPARGTAE-GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPAL 701
IIF+DEID+I R E G+ R + +LL ++DG + VI TNR DILD AL
Sbjct: 275 IIFMDEIDSIGSQRIEGEHGDSEVQRTMMELLNQLDGFESTQNIKVIMCTNRIDILDEAL 334
Query: 702 LRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCRE 761
LRPGR DR I P P+ +AR EI K+H+R + L +D+ ++A +GA++ AVC E
Sbjct: 335 LRPGRIDRKIEFPNPNVEARMEILKIHSRKINLMRGIDMLKIATHMNNCSGAEVKAVCTE 394
Query: 762 AAMNALRRAVAKLSPEELEEESEKFLK 788
A M ALR ++ E+ E K +K
Sbjct: 395 AGMFALRERRVHVTQEDFEMAVAKVMK 421
Score = 207 bits (521), Expect = 5e-52
Identities = 105/209 (50%), Positives = 149/209 (71%), Gaps = 7/209 (3%)
Query: 193 EVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPK 247
++LP V+ ++ EK+P+ TYE +GGL + +++++E++ELP+KHPE+FE LGI PK
Sbjct: 155 KILPSKVDPLVSLMKVEKVPDSTYEMVGGLDQQVKEVKEVIELPVKHPEIFESLGISQPK 214
Query: 248 GVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPA 307
GVLLYGPPGTGKTLLA+AVA+ + FI ++G E++ KY GE +RE+F A E+AP+
Sbjct: 215 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 274
Query: 308 IIFIDEIDAIAPKR-EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPAL 365
IIF+DEID+I +R E G+ E +R + +LL +DG +S + VI TNR D LD AL
Sbjct: 275 IIFMDEIDSIGSQRIEGEHGDSEVQRTMMELLNQLDGFESTQNIKVIMCTNRIDILDEAL 334
Query: 366 RRPGRFDREIEVGVPDKQGRKEILQIHTR 394
RPGR DR+IE P+ + R EIL+IH+R
Sbjct: 335 LRPGRIDRKIEFPNPNVEARMEILKIHSR 363
>gb|AAF08391.1|AF145310_1 (AF145310) 26S proteasome regulatory complex subunit p42D
[Drosophila melanogaster]
Length = 390
Score = 224 bits (564), Expect = 4e-57
Identities = 144/365 (39%), Positives = 204/365 (55%), Gaps = 27/365 (7%)
Query: 421 DKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTH--GFVGAD 478
D ++K + E K +EI+ L+E R I+ TKL DK ++L + VG
Sbjct: 3 DNLRVKALSEYRKKLLEHKEIEGRLKEKRE-EIKDLTKLYDKSENDLKALQSVGQIVGEV 61
Query: 479 LAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVL 538
L L + + I + P R L++ K+ K+ AL M + +R +
Sbjct: 62 LKQLTED-------KFIVKATNGPRYVVGCRRQLDKAKL-KSGTRVALDMTTLTIMRYLP 113
Query: 539 IEVP------------NVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLL 586
EV +V + IGGL D +ELRE +E PL P+ F R+GITPPKG LL
Sbjct: 114 REVDPLVYNMSHEAPGDVTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCLL 173
Query: 587 YGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFI 646
YGPPGTGKTLLA+AVA++ ANF+ + ++ K++GES + IRE+F AR P IIF+
Sbjct: 174 YGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFM 233
Query: 647 DEIDAIAPAR---GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLR 703
DEIDAI R GT+ ++ R + +LL +MDG V +I ATNRPD LDPALLR
Sbjct: 234 DEIDAIGGRRFSEGTSADREI-QRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 292
Query: 704 PGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAA 763
PGR DR I +P P+E+AR EI K+H + ++D + + + ++ + GAD+ VC EA
Sbjct: 293 PGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDNFNGADLRNVCTEAG 352
Query: 764 MNALR 768
A+R
Sbjct: 353 FFAIR 357
Score = 210 bits (530), Expect = 4e-53
Identities = 115/259 (44%), Positives = 163/259 (62%), Gaps = 9/259 (3%)
Query: 193 EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLY 252
EV P + E +VTY IGGL + I ++RE++ELPL +PELF R+GI PPKG LLY
Sbjct: 115 EVDPLVYNMSHEAPGDVTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCLLY 174
Query: 253 GPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFID 312
GPPGTGKTLLA+AVA++ +A F+ + I+ KY GES +RE+F A ++ P IIF+D
Sbjct: 175 GPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMD 234
Query: 313 EIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPG 369
EIDAI +R E + E +R + +LL MDG S G+V +I ATNRPD LDPAL RPG
Sbjct: 235 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPG 294
Query: 370 RFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKII 429
R DR+IE+ +P++Q R EIL+IH + + + E ++K D F+ ++ +
Sbjct: 295 RLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKL------SDNFNGADLRNVC 348
Query: 430 EKVSKAKSEEEIKDILRED 448
+ E + +++ED
Sbjct: 349 TEAGFFAIRAEREYVIQED 367
>gi|6324833 ATPase; component of the 26S proteasome cap subunit; Rpt4p
[Saccharomyces cerevisiae]
>gi|2506090|sp|P53549|SUG2_YEAST PROBABLE 26S PROTEASE
SUBUNIT SUG2 (PROTEASOMAL CAP SUBUNIT)
>gi|2133163|pir||S67156 26S proteasome regulatory
particle chain RPT4 - yeast (Saccharomyces cerevisiae)
>gi|1420585|emb|CAA99481.1| (Z75167) ORF YOR259c
[Saccharomyces cerevisiae] >gi|1931623|gb|AAB51594.1|
(U93262) proteasome cap subunit [Saccharomyces
cerevisiae]
Length = 437
Score = 223 bits (563), Expect = 5e-57
Identities = 146/417 (35%), Positives = 218/417 (52%), Gaps = 15/417 (3%)
Query: 378 GVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKS 437
G+ + G Q H + +P+ +ET +E + D ++E K + + +
Sbjct: 11 GLGETSGDNHTQQSHEQ----QPEQPQETEEHHEEEPSRVDP-EQEAHNKALNQFKRKLL 65
Query: 438 EEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTH--GFVGADLAALAREAAMVVLR--- 492
E D + R I KL DK +++ + +G + L+ E +V
Sbjct: 66 EHRRYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGP 125
Query: 493 RLIKEGKINPEAETIPREVLEELKVTKADFYEAL-KMVEPSALREVLIEVPNVHWDDIGG 551
R I + + + + + V L +T L + +P E + +D IGG
Sbjct: 126 RYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGG 185
Query: 552 LEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIA 611
L + +ELRE +E PLK P+ F+R+GI PPKGVLLYGPPGTGKTLLAKAVA ANFI
Sbjct: 186 LTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF 245
Query: 612 IRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR---GTAEGEKVTDRI 668
++ K++GES + IRE+F A++ P IIF+DE+DAI R GT+ ++ R
Sbjct: 246 SPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREI-QRT 304
Query: 669 INQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVH 728
+ +LLT+MDG +I ATNRPD LDPALLRPGR DR + +P P+E R EIFK+H
Sbjct: 305 LMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIH 364
Query: 729 TRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEK 785
T + + D + + ++G+ GADI EA A+R ++P++L + K
Sbjct: 365 TAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421
Score = 212 bits (535), Expect = 1e-53
Identities = 115/242 (47%), Positives = 162/242 (66%), Gaps = 11/242 (4%)
Query: 179 IPKGI---VQITYNTEVEVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVEL 230
+ KG+ + IT T + +LP+ + + + E+T++ IGGL E I ++RE++EL
Sbjct: 140 LKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIEL 199
Query: 231 PLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGES 290
PLK+PE+F+R+GI+PPKGVLLYGPPGTGKTLLAKAVA A FI I+ KY GES
Sbjct: 200 PLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGES 259
Query: 291 EERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRG 347
+RE+F A+E+ P IIF+DE+DAI +R E + E +R + +LLT MDG + G
Sbjct: 260 ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319
Query: 348 KVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETV 407
+ +I ATNRPD LDPAL RPGR DR++E+ +P++ GR EI +IHT + +F+ E
Sbjct: 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAA 379
Query: 408 IK 409
+K
Sbjct: 380 VK 381
>gb|AAA85134.1| (U43720) Sug2p [Saccharomyces cerevisiae]
Length = 437
Score = 223 bits (562), Expect = 7e-57
Identities = 146/417 (35%), Positives = 218/417 (52%), Gaps = 15/417 (3%)
Query: 378 GVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKS 437
G+ + G Q H + +P+ +ET +E + D ++E K + + +
Sbjct: 11 GLGETSGDNHTQQSHEQ----QPEQPQETEEHHEEEPSRVDP-EQEAHNKALNQFKRKLL 65
Query: 438 EEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTH--GFVGADLAALAREAAMVVLR--- 492
E D + R I KL DK +++ + +G + L+ E +V
Sbjct: 66 EHRRYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKPSSGP 125
Query: 493 RLIKEGKINPEAETIPREVLEELKVTKADFYEAL-KMVEPSALREVLIEVPNVHWDDIGG 551
R I + + + + + V L +T L + +P E + +D IGG
Sbjct: 126 RYIVGVRNSADRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGG 185
Query: 552 LEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIA 611
L + +ELRE +E PLK P+ F+R+GI PPKGVLLYGPPGTGKTLLAKAVA ANFI
Sbjct: 186 LTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF 245
Query: 612 IRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR---GTAEGEKVTDRI 668
++ K++GES + IRE+F A++ P IIF+DE+DAI R GT+ ++ R
Sbjct: 246 SPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREI-QRT 304
Query: 669 INQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVH 728
+ +LLT+MDG +I ATNRPD LDPALLRPGR DR + +P P+E R EIFK+H
Sbjct: 305 LMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIH 364
Query: 729 TRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEK 785
T + + D + + ++G+ GADI EA A+R ++P++L + K
Sbjct: 365 TAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421
Score = 212 bits (535), Expect = 1e-53
Identities = 115/242 (47%), Positives = 162/242 (66%), Gaps = 11/242 (4%)
Query: 179 IPKGI---VQITYNTEVEVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVEL 230
+ KG+ + IT T + +LP+ + + + E+T++ IGGL E I ++RE++EL
Sbjct: 140 LKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIEL 199
Query: 231 PLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGES 290
PLK+PE+F+R+GI+PPKGVLLYGPPGTGKTLLAKAVA A FI I+ KY GES
Sbjct: 200 PLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGES 259
Query: 291 EERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRG 347
+RE+F A+E+ P IIF+DE+DAI +R E + E +R + +LLT MDG + G
Sbjct: 260 ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319
Query: 348 KVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETV 407
+ +I ATNRPD LDPAL RPGR DR++E+ +P++ GR EI +IHT + +F+ E
Sbjct: 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAA 379
Query: 408 IK 409
+K
Sbjct: 380 VK 381
>sp|P78578|PRS6_ASPNG 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG
>gi|1777414|gb|AAB40510.1| (U15601) 26S proteasome
subunit [Aspergillus niger]
Length = 423
Score = 223 bits (562), Expect = 7e-57
Identities = 123/246 (50%), Positives = 165/246 (67%), Gaps = 4/246 (1%)
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
E P+V + D+GGL+ KQE+REAVE PL +K++GI PP+GVLLYGPPGTGKT+L K
Sbjct: 159 EKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVK 218
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA 659
AVA + A+FI + G E + K++GE + +R++FR AR+ SPAIIFIDEIDAIA R A
Sbjct: 219 AVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKRFDA 278
Query: 660 E--GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPA-P 716
+ ++ RI+ +LL +MDG ++S V VI ATNR D LDPALLRPGR DR I P+
Sbjct: 279 QTGADREVQRILLELLNQMDGFEQSSNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLR 338
Query: 717 DEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSP 776
D + R IF M L+ +VDL L R E +GA IAA+ +EA + A+R+ + P
Sbjct: 339 DRRERRLIFSTIASKMSLSPEVDLDSLIVRNEPLSGAVIAAIMQEAGLRAVRKNRYNIIP 398
Query: 777 -EELEE 781
+LE+
Sbjct: 399 RSDLED 404
Score = 204 bits (514), Expect = 3e-51
Identities = 108/229 (47%), Positives = 150/229 (65%), Gaps = 9/229 (3%)
Query: 189 NTEVEVLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGI 243
N V++LP + + E + P+VTY D+GGL ++IRE VELPL +L++++GI
Sbjct: 138 NALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGI 197
Query: 244 EPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEE 303
+PP+GVLLYGPPGTGKT+L KAVAN A FI +NG E + KY GE +R++F+ A E
Sbjct: 198 DPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARE 257
Query: 304 NAPAIIFIDEIDAIAPKREEVVGEVEK---RVVSQLLTLMDGLKSRGKVIVIAATNRPDA 360
N+PAIIFIDEIDAIA KR + ++ R++ +LL MDG + V VI ATNR D
Sbjct: 258 NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFEQSSNVKVIMATNRADT 317
Query: 361 LDPALRRPGRFDREIEV-GVPDKQGRKEILQIHTRGMPIEPDFEKETVI 408
LDPAL RPGR DR+IE + D++ R+ I M + P+ + +++I
Sbjct: 318 LDPALLRPGRLDRKIEFPSLRDRRERRLIFSTIASKMSLSPEVDLDSLI 366
>emb|CAB63651.1| (AJ251819) 26S proteasome subunit 8 [Fagus sylvatica]
Length = 418
Score = 223 bits (562), Expect = 7e-57
Identities = 121/278 (43%), Positives = 179/278 (63%), Gaps = 20/278 (7%)
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAF-KRLGITPPKGVLLYGPPGTGKTLLA 598
+VP+ +D IGGL+ +E++E +E P+K+P+ F + LGI PKGVLLYGPPGTGKTLLA
Sbjct: 150 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFLESLGIAQPKGVLLYGPPGTGKTLLA 209
Query: 599 KAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR-- 656
+AVA + FI + G E++ K++GE + +RE+F AR+ +P+IIF+DEID+I AR
Sbjct: 210 RAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 269
Query: 657 -GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPA 715
G+ G+ + +LL ++DG + V+ TNR DILD ALLRPGR DR I P
Sbjct: 270 SGSGNGDSEVQDHMLELLNQLDGFESIKQIKVLMRTNRIDILDQALLRPGRIDRKIEFPN 329
Query: 716 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLS 775
P+ ++RF+I K+H+R M L +DLK++A + G +GA++ AVC EA M AL
Sbjct: 330 PNRESRFDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALT------- 382
Query: 776 PEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMM 813
+E+ ++ +VT++DFE+A+ KV T+ M
Sbjct: 383 -------AERRVR--LVTQEDFEMAVAKVMKKETEKNM 411
Score = 198 bits (497), Expect = 3e-49
Identities = 106/213 (49%), Positives = 148/213 (68%), Gaps = 10/213 (4%)
Query: 194 VLPQAVE-----VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELF-ERLGIEPPK 247
+LP V+ ++ EK+P+ TY+ IGGL + I++I+E++ELP+KHPELF E LGI PK
Sbjct: 134 ILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFLESLGIAQPK 193
Query: 248 GVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPA 307
GVLLYGPPGTGKTLLA+AVA+ + FI ++G E++ KY GE +RE+F A E+AP+
Sbjct: 194 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 253
Query: 308 IIFIDEIDAIAPKR-EEVVGEVEKRV---VSQLLTLMDGLKSRGKVIVIAATNRPDALDP 363
IIF+DEID+I R E G + V + +LL +DG +S ++ V+ TNR D LD
Sbjct: 254 IIFMDEIDSIGSARMESGSGNGDSEVQDHMLELLNQLDGFESIKQIKVLMRTNRIDILDQ 313
Query: 364 ALRRPGRFDREIEVGVPDKQGRKEILQIHTRGM 396
AL RPGR DR+IE P+++ R +IL+IH+R M
Sbjct: 314 ALLRPGRIDRKIEFPNPNRESRFDILKIHSRRM 346
>gb|AAF54440.1| (AE003684) CG9475 gene product [Drosophila melanogaster]
Length = 421
Score = 223 bits (562), Expect = 7e-57
Identities = 143/401 (35%), Positives = 220/401 (54%), Gaps = 41/401 (10%)
Query: 412 KELEKDDRFDKEKIKKIIEKVSKAKSEEEIKD--ILREDRNLYIEV--------RTKLID 461
+ LEK D D + + +K+ ++++ I E RNL E R K +
Sbjct: 14 QSLEKYDGLDPHDLYVLYKKLQMELELIQVQEDYIKEEQRNLKKEFIHAQEEVKRIKAVP 73
Query: 462 KLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAET---IPREVLEELKVT 518
++ + E G + + VL + +E ++ P + L +L
Sbjct: 74 LVIGQFLEAVDENNGIVASTTGSNYYVRVLSTIDRE-QLKPSSSVGLHKQSNCLVDLVPP 132
Query: 519 KADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLG- 577
+AD + M+ P E P++ + DIGGL+ KQE+REAVE PL + + +K++G
Sbjct: 133 EAD--STISMLSPD-------EKPDISYSDIGGLDIQKQEIREAVELPLTHAQLYKQIGG 183
Query: 578 ---------------ITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWV 622
I PP+GVLL+GPPG GKT+LAKAVA + A+FI + G E + K++
Sbjct: 184 YSQYQKTISTNSLPGIDPPRGVLLFGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYL 243
Query: 623 GESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLTEMDGLV 680
GE + +R++FR A+Q SP+IIFIDEIDAIA R A+ ++ RI+ +LL +MDG
Sbjct: 244 GEGPRMVRDLFRLAKQNSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD 303
Query: 681 ENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDL 740
E + + VI ATNR D LDPALLRPGR DR I +P PD + + +F T M + +DVDL
Sbjct: 304 ETTNIKVIMATNRADTLDPALLRPGRLDRKIELPLPDRRQKRLVFTTITSKMNVGEDVDL 363
Query: 741 KELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
+++ R + + ADI A+C+EA M+A+R ++ ++ E+
Sbjct: 364 EDIIARPDKISNADINAICQEAGMHAVRENRYVVNAKDFEK 404
Score = 188 bits (472), Expect = 3e-46
Identities = 99/231 (42%), Positives = 144/231 (61%), Gaps = 19/231 (8%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLG----------------IEPPKGVL 250
P+++Y DIGGL ++IRE VELPL H +L++++G I+PP+GVL
Sbjct: 147 PDISYSDIGGLDIQKQEIREAVELPLTHAQLYKQIGGYSQYQKTISTNSLPGIDPPRGVL 206
Query: 251 LYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIF 310
L+GPPG GKT+LAKAVA+ A FI + G E + KY GE +R++F+ A++N+P+IIF
Sbjct: 207 LFGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDLFRLAKQNSPSIIF 266
Query: 311 IDEIDAIAPKREEVVGEVEK---RVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRR 367
IDEIDAIA KR + ++ R++ +LL MDG + VI ATNR D LDPAL R
Sbjct: 267 IDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDETTNIKVIMATNRADTLDPALLR 326
Query: 368 PGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDD 418
PGR DR+IE+ +PD++ ++ + T M + D + E +I ++ D
Sbjct: 327 PGRLDRKIELPLPDRRQKRLVFTTITSKMNVGEDVDLEDIIARPDKISNAD 377
>pir||T38636 tat binding homolog - fission yeast (Schizosaccharomyces pombe)
>gi|2388970|emb|CAB11703.1| (Z98979) tat-binding homolog
7, AAA ATPase family protein [Schizosaccharomyces pombe]
Length = 1190
Score = 222 bits (560), Expect = 1e-56
Identities = 142/449 (31%), Positives = 241/449 (53%), Gaps = 46/449 (10%)
Query: 209 VTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVAN 268
+++E +GGL I +++EMV LPL +PE+F+R ++PP+GVL +GPPGTGKTL+A+A+A
Sbjct: 263 LSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALAA 322
Query: 269 EANAY-----FIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREE 323
++ F G + +SK+ GE+E +LR +F+EA+ P+IIF DEID +AP R
Sbjct: 323 ACSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKSTQPSIIFFDEIDGLAPVRSS 382
Query: 324 VVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQ 383
++ +VS LL LMDG++SRG+VI+I ATNRPDA+DPALRRPGRFDRE +PD+
Sbjct: 383 KQEQIHASIVSTLLALMDGMESRGQVIIIGATNRPDAVDPALRRPGRFDREFYFPLPDRD 442
Query: 384 GRKEILQIHTRGM-PIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIK 442
RK+I++IHTR P P++ + EK + ++ + + + +
Sbjct: 443 ARKKIIEIHTRNWDPPVPEWLCSML------AEKSKGYGGADLRALCTEAALNSIKRTYP 496
Query: 443 DILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINP 502
+ R + L I+ +T + K+ D + + ++ ++++ ++P
Sbjct: 497 QLYRSTKRLQIDPKTIKV-KVKDFVMSMKRMIPSSERSSIS------------PSKPLSP 543
Query: 503 EAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREA 562
E + + E ++++ T + P L EV+ + P ++ E ++
Sbjct: 544 ELKPLLNEAFQDIEKTLQKLMPVASKLNP--LEEVMYDDP----------KENDFEYQQR 591
Query: 563 VEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWV 622
+E F+ L I P+ L+ G G G+T L A+ + + + L +
Sbjct: 592 LE-------TFETLRIYKPR-FLICGRKGLGQTALGPAILQQYEGVHVQSFDMSTLLQDS 643
Query: 623 GES-EKRIREIFRKARQASPAIIFIDEID 650
+S E I +F + R+ +P+II+I +ID
Sbjct: 644 TQSIETSIIHLFLEVRRHTPSIIYIPDID 672
Score = 220 bits (556), Expect = 4e-56
Identities = 116/296 (39%), Positives = 186/296 (62%), Gaps = 13/296 (4%)
Query: 543 NVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVA 602
++ ++ +GGL++ +L+E V PL YP+ F+R + PP+GVL +GPPGTGKTL+A+A+A
Sbjct: 262 SLSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALA 321
Query: 603 T-----ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARG 657
+ +F +G + LSKWVGE+E+++R +F +A+ P+IIF DEID +AP R
Sbjct: 322 AACSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKSTQPSIIFFDEIDGLAPVRS 381
Query: 658 TAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 717
+ + E++ I++ LL MDG+ V++I ATNRPD +DPAL RPGRFDR P PD
Sbjct: 382 SKQ-EQIHASIVSTLLALMDGMESRGQVIIIGATNRPDAVDPALRRPGRFDREFYFPLPD 440
Query: 718 EKARFEIFKVHTRGM-PLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKL-- 774
AR +I ++HTR P + LA +++GY GAD+ A+C EAA+N+++R +L
Sbjct: 441 RDARKKIIEIHTRNWDPPVPEWLCSMLAEKSKGYGGADLRALCTEAALNSIKRTYPQLYR 500
Query: 775 SPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGES 830
S + L+ + K++ V KDF +++K++ PS + + + K ++ E+
Sbjct: 501 STKRLQIDP----KTIKVKVKDFVMSMKRMIPSSERSSISPSKPLSPELKPLLNEA 552
>gb|AAF08388.1|AF145307_1 (AF145307) 26S proteasome regulatory complex subunit p48B
[Drosophila melanogaster] >gi|7304183|gb|AAF59219.1|
(AE003840) Rpt1 gene product [Drosophila melanogaster]
Length = 433
Score = 222 bits (560), Expect = 1e-56
Identities = 116/243 (47%), Positives = 152/243 (61%), Gaps = 14/243 (5%)
Query: 162 EAMSVGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAI 221
E M VG K+ + +P ++ P ++ E P+VTY D+GG KE I
Sbjct: 136 EGMRVGVDRNKYQIHIPLPP-----------KIDPTVTMMQVEDKPDVTYSDVGGCKEQI 184
Query: 222 EKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPE 281
EK+RE+VE PL HPE F LGIEPPKGVLL+GPPGTGKTL A+AVAN +A FI + G E
Sbjct: 185 EKLREVVETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSE 244
Query: 282 IMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLT 338
++ KY GE +RE+F+ A +IF DEIDAI R + G+ E +R + +L+
Sbjct: 245 LVQKYVGEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELIN 304
Query: 339 LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPI 398
+DG RG + V+ ATNRPD LDPAL RPGR DR++E G+PD+ GR I +IH R M +
Sbjct: 305 QLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSV 364
Query: 399 EPD 401
E D
Sbjct: 365 ERD 367
Score = 222 bits (559), Expect = 2e-56
Identities = 120/285 (42%), Positives = 166/285 (58%), Gaps = 20/285 (7%)
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
++P+ + + P+V + D+GG ++ ++LRE VE PL +P+ F LGI PPKGVLL+G
Sbjct: 157 IDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVNLGIEPPKGVLLFG 216
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PPGTGKTL A+AVA + A FI + G E++ K+VGE + +RE+F AR +IF DE
Sbjct: 217 PPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSKKACLIFFDE 276
Query: 649 IDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGR 706
IDAI AR A G+ R + +L+ ++DG + V+ ATNRPD LDPAL+RPGR
Sbjct: 277 IDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGR 336
Query: 707 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNA 766
DR + PD+ R IFK+H R M + D+ LAR TGA+I +VC EA M A
Sbjct: 337 LDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCPNSTGAEIRSVCTEAGMFA 396
Query: 767 LRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKY 811
+R + + T KDF A+KKV S K+
Sbjct: 397 IRA------------------RRKVATEKDFLEAVKKVIKSYAKF 423
>gb|AAC15706.1| (AF052191) katanin p60 subunit [Strongylocentrotus purpuratus]
Length = 516
Score = 222 bits (559), Expect = 2e-56
Identities = 131/296 (44%), Positives = 184/296 (61%), Gaps = 14/296 (4%)
Query: 535 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPP-KGVLLYGPPGTG 593
R+++ PNVHW DI GL + K+ L EAV PL P FK GI P KGVL+ GPPGTG
Sbjct: 222 RDIVQRNPNVHWADIAGLTEAKRLLEEAVVLPLWMPDYFK--GIRRPWKGVLMVGPPGTG 279
Query: 594 KTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIA 653
KT+LAKAVATE F + + SK+ GESEK +R +F AR +P+ IFIDEID+I
Sbjct: 280 KTMLAKAVATECGTTFFNVSSASLTSKYHGESEKLVRLLFEMARFYAPSTIFIDEIDSIC 339
Query: 654 PARGTAEGEKVTDRIINQLLTEMDGLVENSG-------VVVIAATNRPDILDPALLRPGR 706
RGT + + R+ ++LL +MDG+ S V+V+AATN P +D AL R R
Sbjct: 340 SKRGTGSEHEASRRVKSELLIQMDGVSGPSAGEESSKMVMVLAATNFPWDIDEALRR--R 397
Query: 707 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNA 766
++ I +P P+ R ++ +++ + +PLADD+DLK +A + +GY+GADI VCR+A+M A
Sbjct: 398 LEKRIYIPLPEIDGREQLLRINLKEVPLADDIDLKSIAEKMDGYSGADITNVCRDASMMA 457
Query: 767 LRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKY-MMEYYRQFEE 821
+RR + L PEE+ ++ L T DF +AL+KV SV K +++Y EE
Sbjct: 458 MRRRIQGLRPEEIRHIPKEELNQ-PSTPADFLLALQKVSKSVGKEDLVKYMAWMEE 512
Score = 153 bits (383), Expect = 7e-36
Identities = 102/264 (38%), Positives = 150/264 (56%), Gaps = 27/264 (10%)
Query: 204 EKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPP-KGVLLYGPPGTGKTLL 262
++ P V + DI GL EA + E V LPL P+ F+ GI P KGVL+ GPPGTGKT+L
Sbjct: 226 QRNPNVHWADIAGLTEAKRLLEEAVVLPLWMPDYFK--GIRRPWKGVLMVGPPGTGKTML 283
Query: 263 AKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR- 321
AKAVA E F ++ + SKY+GESE+ +R +F+ A AP+ IFIDEID+I KR
Sbjct: 284 AKAVATECGTTFFNVSSASLTSKYHGESEKLVRLLFEMARFYAPSTIFIDEIDSICSKRG 343
Query: 322 EEVVGEVEKRVVSQLLTLMDGL-------KSRGKVIVIAATNRPDALDPALRRPGRFDRE 374
E +RV S+LL MDG+ +S V+V+AATN P +D ALRR R ++
Sbjct: 344 TGSEHEASRRVKSELLIQMDGVSGPSAGEESSKMVMVLAATNFPWDIDEALRR--RLEKR 401
Query: 375 IEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVS- 433
I + +P+ GR+++L+I+ + +P+ D + +++ EK D + I + S
Sbjct: 402 IYIPLPEIDGREQLLRINLKEVPLADDIDLKSI------AEKMDGYSGADITNVCRDASM 455
Query: 434 -------KAKSEEEIKDILREDRN 450
+ EEI+ I +E+ N
Sbjct: 456 MAMRRRIQGLRPEEIRHIPKEELN 479
>pir||T33155 hypothetical protein F56H1.4 - Caenorhabditis elegans
>gi|3193161|gb|AAC19196.1| (AF067618) contains
similarity to the AAA family of ATPases (Pfam; AAA,
score; 259.07); most similar to human probable 26S
protease subunit TBP-1 (SW:P17980) [Caenorhabditis
elegans]
Length = 430
Score = 222 bits (559), Expect = 2e-56
Identities = 113/241 (46%), Positives = 161/241 (65%), Gaps = 2/241 (0%)
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
E P + DIGG + QEL EAV P+ + F LGI PPKGVL+YGPPGTGKT++A+
Sbjct: 170 ERPTEQYSDIGGCDKQIQELIEAVVLPMTHKDRFVNLGIHPPKGVLMYGPPGTGKTMMAR 229
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA 659
AVA ++++ F+ + GP+++ ++G+ K +R+ F A++ +PAIIFIDE+DAI R +
Sbjct: 230 AVAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDS 289
Query: 660 E--GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 717
E G++ R + +LL ++DG N + VIAATNR D+LDPALLR GR DR I +P P+
Sbjct: 290 EKAGDREVQRTMLELLNQLDGFQPNDDIKVIAATNRIDVLDPALLRSGRLDRKIELPHPN 349
Query: 718 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPE 777
E AR I ++H+R M + DV+ +ELAR T+ + GA AVC EA M ALRR ++ E
Sbjct: 350 EDARARIMQIHSRKMNVNKDVNFEELARCTDDFNGAQCKAVCVEAGMIALRRDATEILHE 409
Query: 778 E 778
+
Sbjct: 410 D 410
Score = 194 bits (487), Expect = 4e-48
Identities = 114/297 (38%), Positives = 173/297 (57%), Gaps = 21/297 (7%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + ++++ +P Y++ V+ A+EV E P Y DIGG + I+++
Sbjct: 142 VGVNKDSYLILEKLPA-----EYDSRVK----AMEVDER--PTEQYSDIGGCDKQIQELI 190
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E V LP+ H + F LGI PPKGVL+YGPPGTGKT++A+AVA + + F+ + GP+++
Sbjct: 191 EAVVLPMTHKDRFVNLGIHPPKGVLMYGPPGTGKTMMARAVAAQTKSTFLKLAGPQLVQM 250
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
+ G+ + +R+ F A+E APAIIFIDE+DAI KR E G+ E +R + +LL +DG
Sbjct: 251 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 310
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
+ + VIAATNR D LDPAL R GR DR+IE+ P++ R I+QIH+R M + D
Sbjct: 311 FQPNDDIKVIAATNRIDVLDPALLRSGRLDRKIELPHPNEDARARIMQIHSRKMNVNKDV 370
Query: 403 EKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILRED-RNLYIEVRTK 458
E + + D F+ + K + + + +IL ED + +EV+ K
Sbjct: 371 NFEELARC------TDDFNGAQCKAVCVEAGMIALRRDATEILHEDFMDAILEVQAK 421
>gb|AAD24194.1|AF134402_1 (AF134402) Tat-binding protein-1 [Drosophila melanogaster]
Length = 431
Score = 222 bits (559), Expect = 2e-56
Identities = 143/389 (36%), Positives = 223/389 (56%), Gaps = 18/389 (4%)
Query: 393 TRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLY 452
TR M E K VI+ E++ + EKIK EK+ K+ + + E L
Sbjct: 38 TRLMDNEIKIMKSEVIRITHEIQAQN----EKIKDNTEKIKVNKTLPYLVSNVIE--LLD 91
Query: 453 IEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINP-EAETIPREV 511
++ + + D + L G A + R+A + + L+ K+ P + + ++
Sbjct: 92 VDPQEEEDDGSVTVLDNQRKGKC-AVIKTSTRQAYFLPVIGLVDAEKLKPGDLAGVNKDF 150
Query: 512 LEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPK 571
L+ A++ +K +E E P + DIGGL+ QEL EAV P+ + +
Sbjct: 151 YLILETLPAEYDARVKAMEVD-------ERPTEQFSDIGGLDKQIQELIEAVVLPMTHKE 203
Query: 572 AFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIRE 631
FK LGI PPKGV+LYGPPGTGKTLLA+A A ++++ F+ + GP+++ ++G+ K +R+
Sbjct: 204 KFKNLGIHPPKGVILYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 263
Query: 632 IFRKARQASPAIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLTEMDGLVENSGVVVIA 689
F A++ +PAIIFIDE+DAI R +E G++ R + +LL +++G + + VIA
Sbjct: 264 AFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLNGFSSTADIKVIA 323
Query: 690 ATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEG 749
ATNR DIL PALLR GR DR I P P+E+AR I ++H+R M +++DV+ +EL+R T+
Sbjct: 324 ATNRVDIL-PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSNDVNFEELSRSTDD 382
Query: 750 YTGADIAAVCREAAMNALRRAVAKLSPEE 778
+ GA AVC EA M ALRR+ ++ E+
Sbjct: 383 FNGAQCKAVCVEAGMIALRRSANSVTHED 411
Score = 185 bits (465), Expect = 2e-45
Identities = 111/290 (38%), Positives = 167/290 (57%), Gaps = 22/290 (7%)
Query: 173 FMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPL 232
++++ T+P E + +A+EV E P + DIGGL + I+++ E V LP+
Sbjct: 151 YLILETLP---------AEYDARVKAMEVDER--PTEQFSDIGGLDKQIQELIEAVVLPM 199
Query: 233 KHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEE 292
H E F+ LGI PPKGV+LYGPPGTGKTLLA+A A + + F+ + GP+++ + G+ +
Sbjct: 200 THKEKFKNLGIHPPKGVILYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAK 259
Query: 293 RLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKV 349
+R+ F A+E APAIIFIDE+DAI KR E G+ E +R + +LL ++G S +
Sbjct: 260 LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLNGFSSTADI 319
Query: 350 IVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIK 409
VIAATNR D L PAL R GR DR+IE P+++ R I+QIH+R M + D E + +
Sbjct: 320 KVIAATNRVDIL-PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSNDVNFEELSR 378
Query: 410 ALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILRED-RNLYIEVRTK 458
+ D F+ + K + + + ED + +EV+ K
Sbjct: 379 S------TDDFNGAQCKAVCVEAGMIALRRSANSVTHEDFMDAIMEVQAK 422
>gi|4506209 proteasome (prosome, macropain) 26S subunit, ATPase, 2; Proteasome
26S subunit, ATPase, 2 [Homo sapiens]
>gi|547930|sp|P35998|PRS7_HUMAN 26S PROTEASE REGULATORY
SUBUNIT 7 (MSS1 PROTEIN) >gi|107102|pir||S24353
proteasome 26S subunit MSS1 - human
>gi|219931|dbj|BAA01868.1| (D11094) MSS1 protein [Homo
sapiens] >gi|228886|prf||1813280A tat-mediated
transactivation modulator [Homo sapiens]
Length = 433
Score = 221 bits (558), Expect = 2e-56
Identities = 122/285 (42%), Positives = 166/285 (57%), Gaps = 20/285 (7%)
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
++P+ + E P+V + D+GG ++ ++LRE VE PL +P+ F LGI PPKGVLL+G
Sbjct: 157 IDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFG 216
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PPGTGKTL A+AVA + A FI + G E++ K+VGE + +RE+F AR +IF DE
Sbjct: 217 PPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDE 276
Query: 649 IDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGR 706
IDAI AR A G+ R + +L+ ++DG + V+ ATNRPD LDPAL+RPGR
Sbjct: 277 IDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGR 336
Query: 707 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNA 766
DR I PD + R IFK+H R M + D+ + LAR TGA+I +VC EA M A
Sbjct: 337 LDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 396
Query: 767 LRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKY 811
+R + I T KDF A+ KV S K+
Sbjct: 397 IR------------------ARRKIATEKDFLEAVNKVIKSYAKF 423
Score = 221 bits (557), Expect = 3e-56
Identities = 117/251 (46%), Positives = 155/251 (61%), Gaps = 14/251 (5%)
Query: 162 EAMSVGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAI 221
E M VG K+ + +P ++ P ++ E+ P+VTY D+GG KE I
Sbjct: 136 EGMRVGVDRNKYQIHIPLPP-----------KIDPTVTMMQVEEKPDVTYSDVGGCKEQI 184
Query: 222 EKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPE 281
EK+RE+VE PL HPE F LGIEPPKGVLL+GPPGTGKTL A+AVAN +A FI + G E
Sbjct: 185 EKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSE 244
Query: 282 IMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLT 338
++ KY GE +RE+F+ A +IF DEIDAI R + G+ E +R + +L+
Sbjct: 245 LVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELIN 304
Query: 339 LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPI 398
+DG RG + V+ ATNRPD LDPAL RPGR DR+IE +PD +GR I +IH R M +
Sbjct: 305 QLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSV 364
Query: 399 EPDFEKETVIK 409
E D E + +
Sbjct: 365 ERDIRFELLAR 375
>sp|Q63347|PRS7_RAT 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PROTEIN)
>gi|1395179|dbj|BAA09339.1| (D50694) proteasomal ATPase
(MSS1) [Rattus norvegicus]
Length = 433
Score = 221 bits (558), Expect = 2e-56
Identities = 122/285 (42%), Positives = 166/285 (57%), Gaps = 20/285 (7%)
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
++P+ + E P+V + D+GG ++ ++LRE VE PL +P+ F LGI PPKGVLL+G
Sbjct: 157 IDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFG 216
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PPGTGKTL A+AVA + A FI + G E++ K+VGE + +RE+F AR +IF DE
Sbjct: 217 PPGTGKTLCARAVANRTDACFIPVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDE 276
Query: 649 IDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGR 706
IDAI AR A G+ R + +L+ ++DG + V+ ATNRPD LDPAL+RPGR
Sbjct: 277 IDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGR 336
Query: 707 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNA 766
DR I PD + R IFK+H R M + D+ + LAR TGA+I +VC EA M A
Sbjct: 337 LDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 396
Query: 767 LRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKY 811
+R + I T KDF A+ KV S K+
Sbjct: 397 IR------------------ARRKIATEKDFLEAVNKVIKSYAKF 423
Score = 221 bits (557), Expect = 3e-56
Identities = 117/251 (46%), Positives = 155/251 (61%), Gaps = 14/251 (5%)
Query: 162 EAMSVGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAI 221
E M VG K+ + +P ++ P ++ E+ P+VTY D+GG KE I
Sbjct: 136 EGMRVGVDRNKYQIHIPLPP-----------KIDPTVTMMQVEEKPDVTYSDVGGCKEQI 184
Query: 222 EKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPE 281
EK+RE+VE PL HPE F LGIEPPKGVLL+GPPGTGKTL A+AVAN +A FI + G E
Sbjct: 185 EKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIPVIGSE 244
Query: 282 IMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLT 338
++ KY GE +RE+F+ A +IF DEIDAI R + G+ E +R + +L+
Sbjct: 245 LVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELIN 304
Query: 339 LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPI 398
+DG RG + V+ ATNRPD LDPAL RPGR DR+IE +PD +GR I +IH R M +
Sbjct: 305 QLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSV 364
Query: 399 EPDFEKETVIK 409
E D E + +
Sbjct: 365 ERDIRFELLAR 375
>sp|O14126|PRSA_SCHPO 26S PROTEASE REGULATORY SUBUNIT 6A >gi|7435746|pir||T11634 26S
proteasome regulatory particle chain RPT5 - fission
yeast (Schizosaccharomyces pombe)
>gi|2414640|emb|CAB16387.1| (Z99260) probable 26s
protease regulatory subunit 6a. [Schizosaccharomyces
pombe] >gi|6681372|dbj|BAA88693.1| (AB012136) regulatory
subunit of 26S proteasome [Schizosaccharomyces pombe]
Length = 438
Score = 221 bits (558), Expect = 2e-56
Identities = 145/430 (33%), Positives = 240/430 (55%), Gaps = 31/430 (7%)
Query: 359 DALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKA-LKELEKD 417
DALD + ++ G + E G+ + I ++++R +E D + V+K+ + L +
Sbjct: 8 DALDQS-QQGGSSNNEGLDGIEQEILAAGIDELNSRTRLLENDIK---VMKSEFQRLTHE 63
Query: 418 DRFDKEKIKKIIEKVSKAK-------SEEEIKDILREDRNLYIEVRTKLIDKLLDELAEV 470
EKIK+ EK+S K + EI D+ ++ + + + ++ +E
Sbjct: 64 KSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVD---------VQESANQNSEA 114
Query: 471 THGFVGADLAALAREAAMVVLRRLIKEGKINP-EAETIPREVLEELKVTKADFYEALKMV 529
T A + R+ + L L++ +++P + + ++ + +++ +K +
Sbjct: 115 TRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAM 174
Query: 530 EPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGP 589
E E P + DIGGL +EL EA+ P++ F++LG+ PPKG L++GP
Sbjct: 175 EVD-------EKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGP 227
Query: 590 PGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEI 649
PGTGKTLLA+A A +S A F+ + P+++ ++G+ K +R+ F A++ SPAIIFIDE+
Sbjct: 228 PGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIFIDEL 287
Query: 650 DAIAPARGTAE--GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRF 707
DAI R +E G++ R + +LL ++DG + V VIAATNR D LDPALLR GR
Sbjct: 288 DAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRL 347
Query: 708 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNAL 767
DR + P P+E+AR I ++H+R M + DD++ +ELAR T+ Y GA + +VC EA M AL
Sbjct: 348 DRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAMLKSVCVEAGMIAL 407
Query: 768 RRAVAKLSPE 777
R+ K++ E
Sbjct: 408 RQGDTKINHE 417
Score = 194 bits (487), Expect = 4e-48
Identities = 104/251 (41%), Positives = 163/251 (64%), Gaps = 14/251 (5%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
+G + +++++ +P Y++ V+ A+EV E+ P Y DIGGL + IE++
Sbjct: 150 IGVNKDSYLIIDKLPS-----EYDSRVK----AMEVDEK--PTERYSDIGGLSKQIEELF 198
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E + LP++ + F +LG++PPKG L++GPPGTGKTLLA+A A ++NA F+ + P+++
Sbjct: 199 EAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQM 258
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
+ G+ + +R+ F A+E +PAIIFIDE+DAI KR E G+ E +R + +LL +DG
Sbjct: 259 FIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 318
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
S +V VIAATNR D LDPAL R GR DR++E +P+++ R IL+IH+R M I+ D
Sbjct: 319 FSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDI 378
Query: 403 EKETVIKALKE 413
E + ++ E
Sbjct: 379 NWEELARSTDE 389
>gb|AAF35993.1|AC005836_5 (AC005836) 26S Protease Regulatory Subunit [Leishmania major]
Length = 396
Score = 221 bits (558), Expect = 2e-56
Identities = 139/358 (38%), Positives = 205/358 (56%), Gaps = 24/358 (6%)
Query: 423 EKIKKIIEK-VSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDE---LAEVTHGFVGAD 478
E IKK +E+ V++A+ ++ D+ + R L DK+ D+ L + H +VG
Sbjct: 17 EAIKKTVERNVTQARLKKVNDDVKLQQREL---------DKVEDQVNALLSIGH-YVGEV 66
Query: 479 LAALAREAAMVV----LRRLIKEGK-INPEAETIPREVLEELKVTKADFYEAL-KMVEPS 532
L + E +V R L+ K I PE V L++T + L + V+P
Sbjct: 67 LKRVDEERFIVKSISGARHLVGYRKSIKPEKLKFGARVA--LEITTFTIVKVLPREVDPQ 124
Query: 533 ALR-EVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPG 591
+ + +V + DIGGL+ +++RE +E PL P+ F R+GI PPKGVLLYGPPG
Sbjct: 125 VYSMQYMSSDKDVSFQDIGGLQPQMRQMREVIELPLTNPELFVRVGIAPPKGVLLYGPPG 184
Query: 592 TGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDA 651
TGKTLLAKA+A A F+ I ++ K++GES + IRE+F AR+ P IIFIDE+DA
Sbjct: 185 TGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREMFAYAREHEPCIIFIDEVDA 244
Query: 652 IAPAR-GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRL 710
I R + ++ R + +LL +MDG + V VI ATNRPD LD AL+RPGR DR
Sbjct: 245 IGSKRIEGSSSDREIQRTLMELLNQMDGFDKLGKVKVIMATNRPDTLDAALMRPGRLDRK 304
Query: 711 ILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALR 768
I +P P+E R ++ ++H+ + D+D + + + +EG+ GAD+ VC EA M A+R
Sbjct: 305 IEIPLPNEAGRLDVLRIHSAKITKKGDIDFESVVKLSEGFNGADLRNVCTEAGMFAIR 362
Score = 215 bits (542), Expect = 2e-54
Identities = 115/234 (49%), Positives = 159/234 (67%), Gaps = 8/234 (3%)
Query: 184 VQITYNTEVEVLPQAVEVREEKIP------EVTYEDIGGLKEAIEKIREMVELPLKHPEL 237
++IT T V+VLP+ V+ + + +V+++DIGGL+ + ++RE++ELPL +PEL
Sbjct: 106 LEITTFTIVKVLPREVDPQVYSMQYMSSDKDVSFQDIGGLQPQMRQMREVIELPLTNPEL 165
Query: 238 FERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREI 297
F R+GI PPKGVLLYGPPGTGKTLLAKA+A +A F+ I I+ KY GES +RE+
Sbjct: 166 FVRVGIAPPKGVLLYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREM 225
Query: 298 FKEAEENAPAIIFIDEIDAIAPKREEVVGEVE--KRVVSQLLTLMDGLKSRGKVIVIAAT 355
F A E+ P IIFIDE+DAI KR E +R + +LL MDG GKV VI AT
Sbjct: 226 FAYAREHEPCIIFIDEVDAIGSKRIEGSSSDREIQRTLMELLNQMDGFDKLGKVKVIMAT 285
Query: 356 NRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIK 409
NRPD LD AL RPGR DR+IE+ +P++ GR ++L+IH+ + + D + E+V+K
Sbjct: 286 NRPDTLDAALMRPGRLDRKIEIPLPNEAGRLDVLRIHSAKITKKGDIDFESVVK 339
>gi|6320197 (putative) 26S protease subunit; Rpt2p [Saccharomyces cerevisiae]
>gi|730904|sp|P40327|PRS4_YEAST 26S PROTEASE REGULATORY
SUBUNIT 4 HOMOLOG (TAT-BINDING HOMOLOG 5)
>gi|626989|pir||S46613 26S proteasome regulatory
particle chain RPT2 - yeast (Saccharomyces cerevisiae)
>gi|531758|emb|CAA56957.1| (X81070) probable regulatory
subunit of 26S proteasome; homologue to S4 subunit of
human 26S proteasome [Saccharomyces cerevisiae]
>gi|683690|emb|CAA88352.1| (Z48432) homolog to S4
subunit of human 26S proteasome (X81070) [Saccharomyces
cerevisiae] >gi|1430967|emb|CAA98563.1| (Z74055) ORF
YDL007w [Saccharomyces cerevisiae]
Length = 437
Score = 221 bits (557), Expect = 3e-56
Identities = 111/252 (44%), Positives = 167/252 (66%), Gaps = 2/252 (0%)
Query: 542 PNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAV 601
P + DIGGLE QE++E+VE PL +P+ ++ +GI PPKGV+LYG PGTGKTLLAKAV
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236
Query: 602 ATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR--GTA 659
A ++ A F+ I G E++ K++G+ + R+IF+ A + +P+I+FIDEIDAI R +
Sbjct: 237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNS 296
Query: 660 EGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEK 719
GE+ R + +LL ++DG + V VI ATN+ + LDPAL+RPGR DR IL PD
Sbjct: 297 GGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS 356
Query: 720 ARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEEL 779
+ +I +HT M L++DV+L+ L + +GADI A+C EA + ALR +++ E+
Sbjct: 357 TKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDF 416
Query: 780 EEESEKFLKSLI 791
++ E+ +K+ +
Sbjct: 417 KQAKERVMKNKV 428
Score = 219 bits (551), Expect = 1e-55
Identities = 124/270 (45%), Positives = 165/270 (60%), Gaps = 21/270 (7%)
Query: 196 PQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPP 255
P ++ +K P +Y DIGGL+ I++I+E VELPL HPEL+E +GI+PPKGV+LYG P
Sbjct: 166 PMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAP 225
Query: 256 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEID 315
GTGKTLLAKAVAN+ +A F+ I G E++ KY G+ R+IFK A ENAP+I+FIDEID
Sbjct: 226 GTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEID 285
Query: 316 AIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFD 372
AI KR GE E +R + +LL +DG RG V VI ATN+ + LDPAL RPGR D
Sbjct: 286 AIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRID 345
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKEL------------------ 414
R+I PD +K+IL IHT M + D ET++ +L
Sbjct: 346 RKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALR 405
Query: 415 EKDDRFDKEKIKKIIEKVSKAKSEEEIKDI 444
E+ + E K+ E+V K K EE ++ +
Sbjct: 406 ERRMQVTAEDFKQAKERVMKNKVEENLEGL 435
>sp|P46472|PRS7_XENLA 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PROTEIN)
>gi|1079305|pir||S53709 MSS1 protein homolog - African
clawed frog >gi|695772|emb|CAA56438.1| (X80157) xMSS1
[Xenopus laevis] >gi|1095500|prf||2109230A MSS1-like
protein [Xenopus laevis]
Length = 433
Score = 221 bits (557), Expect = 3e-56
Identities = 121/285 (42%), Positives = 166/285 (57%), Gaps = 20/285 (7%)
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
++P+ + E P+V + D+GG ++ ++LRE VE PL +P+ F LGI PPKGVLL+G
Sbjct: 157 IDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFG 216
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PPGTGKTL A+AVA + A FI + G E++ K+VGE + +RE+F AR +IF DE
Sbjct: 217 PPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDE 276
Query: 649 IDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGR 706
IDAI AR A G+ R + +L+ ++DG + V+ ATNRPD LDPAL+RPGR
Sbjct: 277 IDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGR 336
Query: 707 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNA 766
DR I PD + R IFK+H R M + D+ + LAR TGA+I +VC EA M A
Sbjct: 337 LDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 396
Query: 767 LRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKY 811
+R + + T KDF A+ KV S K+
Sbjct: 397 IR------------------ARRKVATEKDFLEAVNKVIKSYAKF 423
Score = 221 bits (557), Expect = 3e-56
Identities = 117/251 (46%), Positives = 155/251 (61%), Gaps = 14/251 (5%)
Query: 162 EAMSVGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAI 221
E M VG K+ + +P ++ P ++ E+ P+VTY D+GG KE I
Sbjct: 136 EGMRVGVDRNKYQIHIPLPP-----------KIDPTVTMMQVEEKPDVTYSDVGGCKEQI 184
Query: 222 EKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPE 281
EK+RE+VE PL HPE F LGIEPPKGVLL+GPPGTGKTL A+AVAN +A FI + G E
Sbjct: 185 EKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSE 244
Query: 282 IMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLT 338
++ KY GE +RE+F+ A +IF DEIDAI R + G+ E +R + +L+
Sbjct: 245 LVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELIN 304
Query: 339 LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPI 398
+DG RG + V+ ATNRPD LDPAL RPGR DR+IE +PD +GR I +IH R M +
Sbjct: 305 QLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSV 364
Query: 399 EPDFEKETVIK 409
E D E + +
Sbjct: 365 ERDIRFELLAR 375
>sp|O17071|PRSX_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT S10B
>gi|7499759|pir||T32268 hypothetical protein F23F1.8 -
Caenorhabditis elegans >gi|2394434|gb|AAB70326.1|
(AF024493) strong similarity to the AAA family of
ATPases [Caenorhabditis elegans]
Length = 398
Score = 221 bits (557), Expect = 3e-56
Identities = 129/340 (37%), Positives = 199/340 (57%), Gaps = 15/340 (4%)
Query: 438 EEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTH--GFVGADLAALAREAAMVVLR--- 492
E+++KD+ +++ + TK DK +++ + VG L L+ E +V
Sbjct: 32 EQKLKDLRKKESEM-----TKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGP 86
Query: 493 RLIKEGKINPEAETIPREVLEELKVTKADFYEAL-KMVEPSALREVLIEVPNVHWDDIGG 551
R + + + E + + L +T L + V+P + + N+ + D+GG
Sbjct: 87 RYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGG 146
Query: 552 LEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIA 611
L + +ELRE VE PL P+ FKR+GITPPKG LL+GPPGTGKTLLA+AVA++ NF+
Sbjct: 147 LAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLK 206
Query: 612 IRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR---GTAEGEKVTDRI 668
+ ++ K++GES + IRE+F AR P I+F+DEIDAI R GT+ ++ R
Sbjct: 207 VVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREI-QRT 265
Query: 669 INQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVH 728
+ +LL ++DG V VI ATNRPD LDPALLRPGR DR I + P+E++R EI K+H
Sbjct: 266 LMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIH 325
Query: 729 TRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALR 768
+ + ++D + + + ++G++ AD+ VC EA M A+R
Sbjct: 326 SNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIR 365
Score = 215 bits (542), Expect = 2e-54
Identities = 115/259 (44%), Positives = 164/259 (62%), Gaps = 9/259 (3%)
Query: 193 EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLY 252
EV P ++ E ++Y D+GGL E I ++RE+VELPL +PELF+R+GI PPKG LL+
Sbjct: 123 EVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLF 182
Query: 253 GPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFID 312
GPPGTGKTLLA+AVA++ + F+ + I+ KY GES +RE+F A ++ P I+F+D
Sbjct: 183 GPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMD 242
Query: 313 EIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPG 369
EIDAI +R E + E +R + +LL +DG S GKV VI ATNRPD LDPAL RPG
Sbjct: 243 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPG 302
Query: 370 RFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKII 429
R DR+IE+G+P++Q R EIL+IH+ + + + E V+K D F ++ +
Sbjct: 303 RLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKL------SDGFSAADLRNVC 356
Query: 430 EKVSKAKSEEEIKDILRED 448
+ E + ++ ED
Sbjct: 357 TEAGMFAIRAEREFVIDED 375
>gb|AAF22521.1|AF123390_1 (AF123390) 26S proteasome AAA-ATPase subunit RPT1a [Arabidopsis
thaliana]
Length = 426
Score = 221 bits (557), Expect = 3e-56
Identities = 123/301 (40%), Positives = 176/301 (57%), Gaps = 28/301 (9%)
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
++PS + E P+V ++D+GG ++ +++RE VE P+ +P+ F +LGI PPKGVL YG
Sbjct: 150 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYG 209
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PPGTGKTLLA+AVA + A FI + G E++ K+VGE + +RE+F+ AR I+F DE
Sbjct: 210 PPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDE 269
Query: 649 IDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGR 706
+DAI AR G+ R + +++ ++DG + V+ ATNRPD LDPALLR GR
Sbjct: 270 VDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRSGR 329
Query: 707 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNA 766
DR + PD ++R +IFK+HTR M D+ + LAR TGADI +VC EA M A
Sbjct: 330 LDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYA 389
Query: 767 LRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRM 826
+R + VT KDF A+ KV ++ Y++F + K M
Sbjct: 390 IR------------------ARRKTVTEKDFLDAVNKV--------IKGYQKFSATPKYM 423
Query: 827 V 827
V
Sbjct: 424 V 424
Score = 220 bits (556), Expect = 4e-56
Identities = 115/251 (45%), Positives = 158/251 (62%), Gaps = 14/251 (5%)
Query: 162 EAMSVGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAI 221
E M VG K+ + +P ++ P + E+ P+VTY D+GG KE I
Sbjct: 129 EGMRVGVDRNKYQIQIPLPP-----------KIDPSVTMMTVEEKPDVTYNDVGGCKEQI 177
Query: 222 EKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPE 281
EK+RE+VELP+ HPE F +LGI+PPKGVL YGPPGTGKTLLA+AVAN +A FI + G E
Sbjct: 178 EKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237
Query: 282 IMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLT 338
++ KY GE +RE+F+ A I+F DE+DAI R + V G+ E +R + +++
Sbjct: 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297
Query: 339 LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPI 398
+DG +RG + V+ ATNRPD LDPAL R GR DR++E G+PD + R +I +IHTR M
Sbjct: 298 QLDGFDARGNIKVLMATNRPDTLDPALLRSGRLDRKVEFGLPDLESRTQIFKIHTRTMNC 357
Query: 399 EPDFEKETVIK 409
E D E + +
Sbjct: 358 ERDIRFELLAR 368
>gb|AAA97498.1| (L17040) ATPase [Saccharomyces cerevisiae]
Length = 437
Score = 220 bits (556), Expect = 4e-56
Identities = 111/252 (44%), Positives = 167/252 (66%), Gaps = 2/252 (0%)
Query: 542 PNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAV 601
P + DIGGLE QE++E+VE PL +P+ ++ +GI PPKGV+LYG PGTGKTLLAKAV
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236
Query: 602 ATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR--GTA 659
A ++ A F+ I G E++ K++G+ + R+IF+ A + +P+I+FIDEIDAI R +
Sbjct: 237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNS 296
Query: 660 EGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEK 719
GE+ R + +LL ++DG + V VI ATN+ + LDPAL+RPGR DR IL PD
Sbjct: 297 GGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRNILFENPDLS 356
Query: 720 ARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEEL 779
+ +I +HT M L++DV+L+ L + +GADI A+C EA + ALR +++ E+
Sbjct: 357 TKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDF 416
Query: 780 EEESEKFLKSLI 791
++ E+ +K+ +
Sbjct: 417 KQAKERVMKNKV 428
Score = 218 bits (550), Expect = 2e-55
Identities = 124/270 (45%), Positives = 164/270 (59%), Gaps = 21/270 (7%)
Query: 196 PQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPP 255
P ++ +K P +Y DIGGL+ I++I+E VELPL HPEL+E +GI+PPKGV+LYG P
Sbjct: 166 PMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAP 225
Query: 256 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEID 315
GTGKTLLAKAVAN+ +A F+ I G E++ KY G+ R+IFK A ENAP+I+FIDEID
Sbjct: 226 GTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEID 285
Query: 316 AIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFD 372
AI KR GE E +R + +LL +DG RG V VI ATN+ + LDPAL RPGR D
Sbjct: 286 AIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRID 345
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKEL------------------ 414
R I PD +K+IL IHT M + D ET++ +L
Sbjct: 346 RNILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALR 405
Query: 415 EKDDRFDKEKIKKIIEKVSKAKSEEEIKDI 444
E+ + E K+ E+V K K EE ++ +
Sbjct: 406 ERRMQVTAEDFKQAKERVMKNKVEENLEGL 435
>sp|P71377|FTH1_HAEIN CELL DIVISION PROTEIN FTSH HOMOLOG 1 >gi|1574793|gb|AAC22979.1|
(U32812) cell division protein (ftsH) [Haemophilus
influenzae Rd]
Length = 635
Score = 220 bits (556), Expect = 4e-56
Identities = 118/262 (45%), Positives = 169/262 (64%), Gaps = 8/262 (3%)
Query: 544 VHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
V + D+ G ++ K+E+ E V++ L+ P F+ LG PKG+L+ GPPGTGKTLLA+A+A
Sbjct: 148 VTFADVAGCDEAKEEVGEIVDF-LRDPNKFQNLGGKIPKGILMVGPPGTGKTLLARAIAG 206
Query: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA--EG 661
E++ F I G + + +VG R+R++F +A++ +P +IFIDEIDA+ RG G
Sbjct: 207 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCLIFIDEIDAVGRQRGAGLGGG 266
Query: 662 EKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 721
++ +NQ+L EMDG N GV+VIAATNRPD+LDPAL RPGRFDR ++V PD K R
Sbjct: 267 HDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGR 326
Query: 722 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
+I KVH R + +A DVD LAR T GY+GAD+A + EAA+ A R ++ E E+
Sbjct: 327 EQILKVHMRKVSVAQDVDAMTLARGTPGYSGADLANLVNEAALFAARVNKRTVTMLEFEK 386
Query: 782 ESEKF-----LKSLIVTRKDFE 798
+K +++I+T K E
Sbjct: 387 AKDKINMGPERRTMIMTDKQKE 408
Score = 194 bits (487), Expect = 4e-48
Identities = 105/264 (39%), Positives = 164/264 (61%), Gaps = 7/264 (2%)
Query: 150 GTPFDEIFRGFFEAMSVGFGELKFMV-VNTIPKGIVQITYNTEVEVLPQAVEVREEKIPE 208
GTPF+ RGF + + + + F+V V +Q + ++ + +
Sbjct: 90 GTPFER--RGFLSQILISWFPMLFLVGVWVFFMRQMQGGGGKAMSFGKSRAKMLNQDQIK 147
Query: 209 VTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVAN 268
VT+ D+ G EA E++ E+V+ L+ P F+ LG + PKG+L+ GPPGTGKTLLA+A+A
Sbjct: 148 VTFADVAGCDEAKEEVGEIVDF-LRDPNKFQNLGGKIPKGILMVGPPGTGKTLLARAIAG 206
Query: 269 EANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVG-- 326
EA F I+G + + + G R+R++F++A++NAP +IFIDEIDA+ +R +G
Sbjct: 207 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCLIFIDEIDAVGRQRGAGLGGG 266
Query: 327 -EVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGR 385
+ ++ ++Q+L MDG VIVIAATNRPD LDPAL RPGRFDR++ VG+PD +GR
Sbjct: 267 HDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGR 326
Query: 386 KEILQIHTRGMPIEPDFEKETVIK 409
++IL++H R + + D + T+ +
Sbjct: 327 EQILKVHMRKVSVAQDVDAMTLAR 350
>gb|AAF21247.1|AF048706_1 (AF048706) CAD ATPase; AAA1 [Arabidopsis thaliana]
>gi|6751710|gb|AAF27692.1|AC018848_9 (AC018848) CAD
ATPase (AAA1); 35570-33019 [Arabidopsis thaliana]
Length = 523
Score = 220 bits (556), Expect = 4e-56
Identities = 124/295 (42%), Positives = 190/295 (64%), Gaps = 15/295 (5%)
Query: 535 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPP-KGVLLYGPPGTG 593
R+VL P V WDD+ GL + K+ L EAV PL P+ F+ GI P KGVL++GPPGTG
Sbjct: 227 RDVLDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTG 284
Query: 594 KTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIA 653
KTLLAKAVATE F + + SKW GESE+ +R +F AR +P+ IFIDEID++
Sbjct: 285 KTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLC 344
Query: 654 PARGTAEGEKVTDRIINQLLTEMDGLVENSG---------VVVIAATNRPDILDPALLRP 704
+RG + + + R+ ++LL ++DG V N+ V+V+AATN P +D AL R
Sbjct: 345 NSRGGSGEHESSRRVKSELLVQVDG-VSNTATNEDGSRKIVMVLAATNFPWDIDEALRR- 402
Query: 705 GRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAM 764
R ++ I +P PD ++R + ++ R + +A DV+++++ARRTEGY+G D+ VCR+A+M
Sbjct: 403 -RLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDASM 461
Query: 765 NALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQF 819
N +RR +A + +E++ S+ + + V DFE A++KV+PSV+ +E + ++
Sbjct: 462 NGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIRKVQPSVSSSDIEKHEKW 516
Score = 150 bits (375), Expect = 6e-35
Identities = 98/257 (38%), Positives = 145/257 (56%), Gaps = 16/257 (6%)
Query: 204 EKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPP-KGVLLYGPPGTGKTLL 262
+ P V ++D+ GL EA + E V LPL PE F+ GI P KGVL++GPPGTGKTLL
Sbjct: 231 DSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKTLL 288
Query: 263 AKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR- 321
AKAVA E F ++ + SK+ GESE +R +F A AP+ IFIDEID++ R
Sbjct: 289 AKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRG 348
Query: 322 EEVVGEVEKRVVSQLLTLMDGLK--------SRGKVIVIAATNRPDALDPALRRPGRFDR 373
E +RV S+LL +DG+ SR V+V+AATN P +D ALRR R ++
Sbjct: 349 GSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR--RLEK 406
Query: 374 EIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFD--KEKIKKIIEK 431
I + +PD + RK ++ I+ R + + D E V + + DD + ++ + +
Sbjct: 407 RIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRR 466
Query: 432 VSKAKSEEEIKDILRED 448
K+ +EIK++ ++D
Sbjct: 467 KIAGKTRDEIKNMSKDD 483
>gb|AAF02853.1|AC009324_2 (AC009324) Putative 26S proteasome ATPase subunit [Arabidopsis
thaliana]
Length = 451
Score = 219 bits (551), Expect = 1e-55
Identities = 114/231 (49%), Positives = 151/231 (65%), Gaps = 7/231 (3%)
Query: 182 GIVQITYNTEV----EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPEL 237
G+ Q Y ++ ++ P + E+ P+ TY DIGG KE IEKIRE+VELP+ HPE
Sbjct: 158 GVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEK 217
Query: 238 FERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREI 297
F RLGI+PPKGVL YGPPG+GKTL+A+AVAN A FI + G E++ KY GE +RE+
Sbjct: 218 FVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVREL 277
Query: 298 FKEAEENAPAIIFIDEIDAIAPKR-EEVVGEVE--KRVVSQLLTLMDGLKSRGKVIVIAA 354
F+ A I+F DEIDAI R ++ VG +R + ++L +DG +RG + V+ A
Sbjct: 278 FQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMA 337
Query: 355 TNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKE 405
TNRPD LDPAL RPGR DR++E +PD +GR +I +IHTR M E D E
Sbjct: 338 TNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFE 388
Score = 215 bits (541), Expect = 2e-54
Identities = 125/296 (42%), Positives = 170/296 (57%), Gaps = 27/296 (9%)
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
++PS + E P+ + DIGG ++ +++RE VE P+ +P+ F RLGI PPKGVL YG
Sbjct: 174 IDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYG 233
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PPG+GKTL+A+AVA + A FI + G E++ K++GE + +RE+F+ AR I+F DE
Sbjct: 234 PPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDE 293
Query: 649 IDAIAPAR---GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPG 705
IDAI AR G +V R + ++L ++DG + V+ ATNRPDILDPALLRPG
Sbjct: 294 IDAIGGARFDDGVGSDNEV-QRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPG 352
Query: 706 RFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMN 765
R DR + PD + R +IFK+HTR M D+ + LA TGADI +VC EA M
Sbjct: 353 RLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMY 412
Query: 766 ALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKV-----KPSVTKYMMEYY 816
A+ + VT KDF A+ KV K S T M YY
Sbjct: 413 AIG------------------ARRKSVTEKDFLDAVNKVVKGYQKFSATPKYMAYY 450
>sp|P46471|PRS7_MOUSE 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PROTEIN)
Length = 433
Score = 218 bits (550), Expect = 2e-55
Identities = 120/285 (42%), Positives = 165/285 (57%), Gaps = 20/285 (7%)
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
++P+ + E P+V + D+GG ++ ++LRE VE PL +P+ LGI PPKGVLL+G
Sbjct: 157 IDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERLVNLGIEPPKGVLLFG 216
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PPGTGKTL A+AVA + A FI + G E++ K+VGE + +RE+F AR +IF DE
Sbjct: 217 PPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDE 276
Query: 649 IDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGR 706
+DAI AR A G+ R + +L+ ++DG + V+ ATNRPD LDPAL+RPGR
Sbjct: 277 MDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGR 336
Query: 707 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNA 766
DR I PD + R IFK+H R M + D+ + LAR TGA+I +VC EA M A
Sbjct: 337 LDRKIEFSLPDLEGRTHIFKIHARSMSVERDIGFELLARLCPNSTGAEIRSVCTEAGMFA 396
Query: 767 LRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKY 811
+R + I T KDF A+ KV S K+
Sbjct: 397 IR------------------ARRKIATEKDFLEAVNKVIKSYAKF 423
Score = 217 bits (546), Expect = 5e-55
Identities = 115/251 (45%), Positives = 154/251 (60%), Gaps = 14/251 (5%)
Query: 162 EAMSVGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAI 221
E M VG K+ + +P ++ P ++ E+ P+VTY D+GG KE I
Sbjct: 136 EGMRVGVDRNKYQIHIPLPP-----------KIDPTVTMMQVEEKPDVTYSDVGGCKEQI 184
Query: 222 EKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPE 281
EK+RE+VE PL HPE LGIEPPKGVLL+GPPGTGKTL A+AVAN +A FI + G E
Sbjct: 185 EKLREVVETPLLHPERLVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSE 244
Query: 282 IMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLT 338
++ KY GE +RE+F+ A +IF DE+DAI R + G+ E +R + +L+
Sbjct: 245 LVQKYVGEGARMVRELFEMARTKKACLIFFDEMDAIGGARFDDGAGGDNEVQRTMLELIN 304
Query: 339 LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPI 398
+DG RG + V+ ATNRPD LDPAL RPGR DR+IE +PD +GR I +IH R M +
Sbjct: 305 QLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSV 364
Query: 399 EPDFEKETVIK 409
E D E + +
Sbjct: 365 ERDIGFELLAR 375
>emb|CAC05251.1| (AL391604) putative mitochondrial respiratory chain complexes
assembly protein [Schizosaccharomyces pombe]
Length = 773
Score = 218 bits (549), Expect = 2e-55
Identities = 124/283 (43%), Positives = 173/283 (60%), Gaps = 12/283 (4%)
Query: 544 VHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
+ + D+ G+++ K+E+ E V++ LK PK ++RLG P+G +L GPPGTGKTLLAKA A
Sbjct: 293 IKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAG 351
Query: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA---E 660
E+ F+++ G E L +VG R+R++F AR+ +P IIFIDEIDAI ARG
Sbjct: 352 EANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKARGRGGQFG 411
Query: 661 GEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKA 720
+ +NQLL EMDG + +VV A TNRPD+LDPALLRPGRFDR I + PD
Sbjct: 412 SNDERESTLNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGG 471
Query: 721 RFEIFKVHTRGMPLADDVDL--KELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEE 778
R +IFKVH + + AD++DL K LA T G+TGADI VC E A+ A R ++
Sbjct: 472 REQIFKVHLKHIKAADNIDLIAKRLAVLTSGFTGADIMNVCNEGALIAARSNSNEVQMVH 531
Query: 779 LEEESEKFL-----KSLIVTRKDFE-VALKKVKPSVTKYMMEY 815
E+ E+ KS +++ ++ VA + +V + MEY
Sbjct: 532 FEQAIERVTAGLEKKSRVLSPEEKNTVAHHEAGHAVAGWFMEY 574
Score = 180 bits (451), Expect = 7e-44
Identities = 93/191 (48%), Positives = 129/191 (66%), Gaps = 5/191 (2%)
Query: 208 EVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVA 267
++ + D+ G+ EA E+I E V+ LK+P+ +ERLG + P+G +L GPPGTGKTLLAKA A
Sbjct: 292 KIKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATA 350
Query: 268 NEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAI--APKREEVV 325
EAN F++++G E + + G R+R++F A +NAP IIFIDEIDAI A R
Sbjct: 351 GEANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKARGRGGQF 410
Query: 326 GEVEKR--VVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQ 383
G ++R ++QLL MDG S ++V A TNRPD LDPAL RPGRFDR+I + PD
Sbjct: 411 GSNDERESTLNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIG 470
Query: 384 GRKEILQIHTR 394
GR++I ++H +
Sbjct: 471 GREQIFKVHLK 481
>emb|CAA16915.2| (AL021767) 26s protease regulatory subunit 7 homolog
[Schizosaccharomyces pombe]
Length = 438
Score = 217 bits (548), Expect = 3e-55
Identities = 114/251 (45%), Positives = 158/251 (62%), Gaps = 14/251 (5%)
Query: 162 EAMSVGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAI 221
E M VG K+ + +P ++ P ++ E+ P+VTY D+GG KE I
Sbjct: 140 EGMRVGCDRNKYAIQLPLPP-----------KIDPSVTMMQVEEKPDVTYGDVGGCKEQI 188
Query: 222 EKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPE 281
E++RE+VELPL PE F +LGI+PPKG++LYGPPGTGKTL A+AVAN +A FI + G E
Sbjct: 189 ERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSE 248
Query: 282 IMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLT 338
++ KY GE +RE+F+ A IIF DEIDAI R + G+ E +R + +L+T
Sbjct: 249 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELIT 308
Query: 339 LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPI 398
+DG RG + V+ ATNRP+ LD AL RPGR DR++E G+PD +GR IL+IH + M I
Sbjct: 309 QLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAI 368
Query: 399 EPDFEKETVIK 409
+ D E + +
Sbjct: 369 DKDIRWELIAR 379
Score = 210 bits (529), Expect = 5e-53
Identities = 114/285 (40%), Positives = 164/285 (57%), Gaps = 20/285 (7%)
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
++PS + E P+V + D+GG ++ + LRE VE PL P+ F +LGI PPKG++LYG
Sbjct: 161 IDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYG 220
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PPGTGKTL A+AVA + A FI + G E++ K+VGE + +RE+F AR IIF DE
Sbjct: 221 PPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDE 280
Query: 649 IDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGR 706
IDAI AR A G+ R + +L+T++DG + V+ ATNRP+ LD AL+RPGR
Sbjct: 281 IDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGR 340
Query: 707 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNA 766
DR + PD + R I ++H + M + D+ + +AR TGA++ +VC EA M A
Sbjct: 341 IDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFA 400
Query: 767 LRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKY 811
+R + + T KDF A++KV K+
Sbjct: 401 IR------------------ARRRVATEKDFLDAVQKVVKGNQKF 427
>pir||T39558 26S proteinase regulatory subunit 7 - fission yeast
(Schizosaccharomyces pombe)
Length = 440
Score = 217 bits (548), Expect = 3e-55
Identities = 114/251 (45%), Positives = 158/251 (62%), Gaps = 14/251 (5%)
Query: 162 EAMSVGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAI 221
E M VG K+ + +P ++ P ++ E+ P+VTY D+GG KE I
Sbjct: 142 EGMRVGCDRNKYAIQLPLPP-----------KIDPSVTMMQVEEKPDVTYGDVGGCKEQI 190
Query: 222 EKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPE 281
E++RE+VELPL PE F +LGI+PPKG++LYGPPGTGKTL A+AVAN +A FI + G E
Sbjct: 191 ERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSE 250
Query: 282 IMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLT 338
++ KY GE +RE+F+ A IIF DEIDAI R + G+ E +R + +L+T
Sbjct: 251 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELIT 310
Query: 339 LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPI 398
+DG RG + V+ ATNRP+ LD AL RPGR DR++E G+PD +GR IL+IH + M I
Sbjct: 311 QLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAI 370
Query: 399 EPDFEKETVIK 409
+ D E + +
Sbjct: 371 DKDIRWELIAR 381
Score = 210 bits (529), Expect = 5e-53
Identities = 114/285 (40%), Positives = 164/285 (57%), Gaps = 20/285 (7%)
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
++PS + E P+V + D+GG ++ + LRE VE PL P+ F +LGI PPKG++LYG
Sbjct: 163 IDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYG 222
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PPGTGKTL A+AVA + A FI + G E++ K+VGE + +RE+F AR IIF DE
Sbjct: 223 PPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDE 282
Query: 649 IDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGR 706
IDAI AR A G+ R + +L+T++DG + V+ ATNRP+ LD AL+RPGR
Sbjct: 283 IDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGR 342
Query: 707 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNA 766
DR + PD + R I ++H + M + D+ + +AR TGA++ +VC EA M A
Sbjct: 343 IDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFA 402
Query: 767 LRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKY 811
+R + + T KDF A++KV K+
Sbjct: 403 IR------------------ARRRVATEKDFLDAVQKVVKGNQKF 429
>pir||T49507 probable 26S proteasome regulatory particle chain RPT1 [imported] -
Neurospora crassa >gi|7899363|emb|CAB91768.1| (AL356173)
probable 26S proteasome regulatory particle chain RPT1
[Neurospora crassa]
Length = 439
Score = 217 bits (548), Expect = 3e-55
Identities = 117/249 (46%), Positives = 155/249 (61%), Gaps = 14/249 (5%)
Query: 162 EAMSVGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAI 221
E M VG K+ ++ +P I + V VE + P+VTY D+GG KE +
Sbjct: 142 EGMRVGVDRNKYQILLPLPPKI-------DASVTMMTVEEK----PDVTYGDVGGCKEQV 190
Query: 222 EKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPE 281
EK+RE+VE+PL PE F LGI+PPKG LLYGPPGTGKTL A+AVAN +A FI + G E
Sbjct: 191 EKLREVVEMPLLSPERFVNLGIDPPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSE 250
Query: 282 IMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLT 338
++ KY GE +RE+F+ A IIF DEIDAI R + G+ E +R + +L+T
Sbjct: 251 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELIT 310
Query: 339 LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPI 398
+DG +RG + V+ ATNRP LDPAL RPGR DR+IE +PD +GR IL+IH + M +
Sbjct: 311 QLDGFDARGNIKVMFATNRPSTLDPALMRPGRIDRKIEFSLPDLEGRANILRIHAKSMSV 370
Query: 399 EPDFEKETV 407
E D E +
Sbjct: 371 ERDIRWELI 379
Score = 210 bits (528), Expect = 7e-53
Identities = 135/397 (34%), Positives = 207/397 (52%), Gaps = 38/397 (9%)
Query: 410 ALKELEKDDRFDKEKIKKIIEKVSKAKSEEEI-----------KDILREDRNLYIEVRTK 458
A+K+LE+ KEK + + EK+ +S+ + + + E++ L + TK
Sbjct: 48 AIKKLEQQI---KEKQQSVDEKIGVKESDTGLAPPHLWDVAADRQRMSEEQPLQVARCTK 104
Query: 459 LIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKV- 517
+I DE ++ V+ + I + + P ++ E ++V
Sbjct: 105 IIPDEKDE-----------------SKSKYVINVKQIAKFVVQLGERVSPTDIEEGMRVG 147
Query: 518 TKADFYEALKMVEPSALREVLI----EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAF 573
+ Y+ L + P V + E P+V + D+GG ++ ++LRE VE PL P+ F
Sbjct: 148 VDRNKYQILLPLPPKIDASVTMMTVEEKPDVTYGDVGGCKEQVEKLREVVEMPLLSPERF 207
Query: 574 KRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIF 633
LGI PPKG LLYGPPGTGKTL A+AVA + A FI + G E++ K+VGE + +RE+F
Sbjct: 208 VNLGIDPPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELF 267
Query: 634 RKARQASPAIIFIDEIDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAAT 691
AR IIF DEIDAI AR A G+ R + +L+T++DG + V+ AT
Sbjct: 268 EMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDARGNIKVMFAT 327
Query: 692 NRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYT 751
NRP LDPAL+RPGR DR I PD + R I ++H + M + D+ + ++R T
Sbjct: 328 NRPSTLDPALMRPGRIDRKIEFSLPDLEGRANILRIHAKSMSVERDIRWELISRLCPNAT 387
Query: 752 GADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLK 788
GA++ +VC EA M A+R S ++ +K +K
Sbjct: 388 GAELRSVCTEAGMFAIRARRKVASEKDFLSAVDKVIK 424
>emb|CAA11285.1| (AJ223384) 26S proteasome regulatory ATPase subunit 10b (S10b)
[Manduca sexta]
Length = 396
Score = 217 bits (547), Expect = 4e-55
Identities = 142/357 (39%), Positives = 208/357 (57%), Gaps = 29/357 (8%)
Query: 454 EVRTKLIDKLLDELAEVTHGFVGA--DLAALAREAAMV--VLRRLIKEGKINPEAETIPR 509
EV ++L + D+L ++T + + DL AL +V VL++L +E K +A PR
Sbjct: 28 EVESRL-KAMRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEE-KFIVKATNGPR 85
Query: 510 EV------LEELKVTKADFYEALKMVEPSALREVLIEVP------------NVHWDDIGG 551
V L++ K+ K AL M + +R + EV +V + IGG
Sbjct: 86 YVVGCRRQLDKNKL-KGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYAAIGG 144
Query: 552 LEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIA 611
L++ ++LRE +E PL P+ F R+GITPPKG LLYGPPGTGKTLLA+AVA++ ANF+
Sbjct: 145 LQEQIRQLREVIELPLLNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLK 204
Query: 612 IRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR---GTAEGEKVTDRI 668
+ ++ K++GES + IRE+F AR P IIF+DEIDAI R GT+ ++ R
Sbjct: 205 VVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREI-QRT 263
Query: 669 INQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVH 728
+ +LL +MDG V +I ATNRPD LDPALLRPGR DR I +P P+E+AR EI K+H
Sbjct: 264 LMELLNQMDGFDSLGQVKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIH 323
Query: 729 TRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEK 785
+ ++D + + + ++ + GAD+ VC EA + A+R + E+L + K
Sbjct: 324 AAPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRK 380
Score = 214 bits (540), Expect = 3e-54
Identities = 118/259 (45%), Positives = 164/259 (62%), Gaps = 9/259 (3%)
Query: 193 EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLY 252
EV P + E +VTY IGGL+E I ++RE++ELPL +PELF R+GI PPKG LLY
Sbjct: 121 EVDPLVYNMSHEDPGDVTYAAIGGLQEQIRQLREVIELPLLNPELFVRVGITPPKGCLLY 180
Query: 253 GPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFID 312
GPPGTGKTLLA+AVA++ +A F+ + I+ KY GES +RE+F A ++ P IIF+D
Sbjct: 181 GPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMD 240
Query: 313 EIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPG 369
EIDAI +R E + E +R + +LL MDG S G+V +I ATNRPD LDPAL RPG
Sbjct: 241 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKIIMATNRPDTLDPALLRPG 300
Query: 370 RFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKII 429
R DR+IE+ +P++Q R EIL+IH + + + E V+K D F+ ++ +
Sbjct: 301 RLDRKIEIPLPNEQARLEILKIHAAPIAKHGEMDYEAVVKL------SDTFNGADLRNVC 354
Query: 430 EKVSKAKSEEEIKDILRED 448
+ E + I++ED
Sbjct: 355 TEAGLFAIRAEREYIIQED 373
>sp|Q18787|PRS7_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT 7 >gi|7497832|pir||T20152
hypothetical protein C52E4.4 - Caenorhabditis elegans
>gi|3875191|emb|CAB01414.1| (Z78012) Similarity to Human
26S protease regulatory subunit 7 (SW:PRS7_HUMAN),
contains similarity to Pfam domain: PF00004 (ATPases
associated with various cellular activities (AAA)),
Score=326.4, E-value=1.1e-94, N=1~cDNA EST EMBL:T00856
comes from t>
Length = 435
Score = 217 bits (546), Expect = 5e-55
Identities = 113/251 (45%), Positives = 155/251 (61%), Gaps = 14/251 (5%)
Query: 162 EAMSVGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAI 221
E M VG K+ + +P ++ P ++ E+ P+VTY D+GG K+ I
Sbjct: 138 EGMRVGVDRNKYQIHLPLP-----------AKIDPTVTMMQVEEKPDVTYSDVGGCKDQI 186
Query: 222 EKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPE 281
EK+RE+VE PL HPE + LGIEPPKGVLLYGPPGTGKTL A+AVAN +A FI + G E
Sbjct: 187 EKLREVVETPLLHPERYVNLGIEPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSE 246
Query: 282 IMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLT 338
++ KY GE +RE+F+ A +IF DEIDA+ R + G+ E +R + +L+
Sbjct: 247 LVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQGGDNEVQRTMLELIN 306
Query: 339 LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPI 398
+DG RG + V+ ATNRPD LDPAL RPGR DR++E +PD GR IL+IH + M +
Sbjct: 307 QLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSV 366
Query: 399 EPDFEKETVIK 409
E D + + +
Sbjct: 367 ERDIRYDLLAR 377
Score = 214 bits (540), Expect = 3e-54
Identities = 151/440 (34%), Positives = 220/440 (49%), Gaps = 61/440 (13%)
Query: 414 LEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLID-------KLLDE 466
L D R K+ K EK +A E +I + R + Y E + K +D K ++E
Sbjct: 5 LGDDMRKTKKDDTKEEEKNFQALDEGDIAVLKRYGQGPYAE-QLKTLDADIENCLKKVNE 63
Query: 467 LAEVTHGFVG----------ADLAALAREAAMVVLR--RLIKEGKINPE----------- 503
L+ V G AD A+ +E + V R ++I K +P
Sbjct: 64 LSGVKESDTGLAPPALWDIAADKQAMQQEQPLQVARCTKIITSDKHDPRYLINVKQFAKF 123
Query: 504 ----AETI-PREVLEELKV----TKADFYEALKM-VEPSALREVLIEVPNVHWDDIGGLE 553
A+++ P ++ E ++V K + L ++P+ + E P+V + D+GG +
Sbjct: 124 VVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEKPDVTYSDVGGCK 183
Query: 554 DVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIR 613
D ++LRE VE PL +P+ + LGI PPKGVLLYGPPGTGKTL A+AVA + A FI +
Sbjct: 184 DQIEKLREVVETPLLHPERYVNLGIEPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVI 243
Query: 614 GPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR--GTAEGEKVTDRIINQ 671
G E++ K+VGE + +RE+F AR +IF DEIDA+ AR G+ R + +
Sbjct: 244 GSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQGGDNEVQRTMLE 303
Query: 672 LLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG 731
L+ ++DG + V+ ATNRPD LDPAL+RPGR DR + PD R I K+H +
Sbjct: 304 LINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQ 363
Query: 732 MPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLI 791
M + D+ LAR TGA+I +VC EA M A+R + +
Sbjct: 364 MSVERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIR------------------ARRKV 405
Query: 792 VTRKDFEVALKKVKPSVTKY 811
T KDF A+ KV K+
Sbjct: 406 ATEKDFLEAINKVVKGYAKF 425
>pir||T41400 probable peroxisome biosynthesis protein - fission yeast
(Schizosaccharomyces pombe) >gi|3169060|emb|CAA19256.1|
(AL023704) putative peroxisome biosynthesis protein; AAA
family ATPases [Schizosaccharomyces pombe]
Length = 937
Score = 217 bits (546), Expect = 5e-55
Identities = 108/322 (33%), Positives = 193/322 (59%), Gaps = 7/322 (2%)
Query: 454 EVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLE 513
E+ T + + ++ + F+ ++ ++RL+ E + + + P+ ++
Sbjct: 519 EILTTIFQENFSDITMDSIEFISVKTEGYLMTDLVLFVKRLLSEAFVE-KIQNGPKHLMN 577
Query: 514 ELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAF 573
+ + K LK P LR+ ++ W DI G+++ K+ +R+ +E P+KY +
Sbjct: 578 KGLIEKT-----LKDFVPLQLRKAKFVKSSIRWIDIAGMQEAKEAVRDIIESPVKYSLIY 632
Query: 574 KRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIF 633
K+ + P G+LL+G PG GKT LA A+++ FI+I+GPE+L K++G+SE+ +R++F
Sbjct: 633 KQCRLRLPTGILLFGYPGCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLF 692
Query: 634 RKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNR 693
+A+ A P ++F DE D++AP RG + VTDR++NQ+LT+MDG GV ++AAT R
Sbjct: 693 SRAQMAKPCVLFFDEFDSVAPRRG-QDSTGVTDRVVNQILTQMDGAESLDGVYIVAATTR 751
Query: 694 PDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGA 753
PD++DPALLRPGR D+LI P+E+ R E+ + + + LK+L+ T+GYT A
Sbjct: 752 PDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLSTLTDGYTYA 811
Query: 754 DIAAVCREAAMNALRRAVAKLS 775
D++++ +A + A+ + + ++S
Sbjct: 812 DLSSLLYDAHLIAVHKLLKRVS 833
Score = 168 bits (422), Expect = 2e-40
Identities = 84/212 (39%), Positives = 139/212 (64%), Gaps = 7/212 (3%)
Query: 181 KGIVQITYNTEVEVLPQAVEVREEKIPE--VTYEDIGGLKEAIEKIREMVELPLKHPELF 238
KG+++ T V + ++R+ K + + + DI G++EA E +R+++E P+K+ ++
Sbjct: 578 KGLIEKTLKDFVPL-----QLRKAKFVKSSIRWIDIAGMQEAKEAVRDIIESPVKYSLIY 632
Query: 239 ERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIF 298
++ + P G+LL+G PG GKT LA A+++ FI+I GPE++ KY G+SE+ +R++F
Sbjct: 633 KQCRLRLPTGILLFGYPGCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLF 692
Query: 299 KEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRP 358
A+ P ++F DE D++AP+R + V RVV+Q+LT MDG +S V ++AAT RP
Sbjct: 693 SRAQMAKPCVLFFDEFDSVAPRRGQDSTGVTDRVVNQILTQMDGAESLDGVYIVAATTRP 752
Query: 359 DALDPALRRPGRFDREIEVGVPDKQGRKEILQ 390
D +DPAL RPGR D+ I +P+++ R E+LQ
Sbjct: 753 DMIDPALLRPGRLDKLIFCDLPNEEERLEVLQ 784
>pir||H72692 probable p60 katanin APE0960 - Aeropyrum pernix (strain K1)
>gi|5104629|dbj|BAA79944.1| (AP000060) 384aa long
hypothetical p60 katanin [Aeropyrum pernix]
Length = 384
Score = 217 bits (546), Expect = 5e-55
Identities = 138/369 (37%), Positives = 206/369 (55%), Gaps = 30/369 (8%)
Query: 460 IDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIPREVLEELKVTK 519
++K ++ L E+ + LA + R + RR +K+ + +A IP E
Sbjct: 34 LNKAIEYLTEIVRNYPDYPLAHIYRRL-IAQYRRKVKD--LEKKARMIPASGDE----VY 86
Query: 520 ADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGIT 579
D E E A VL E P+V +DDI GLE+ K+ +REA+ +P+K P F +
Sbjct: 87 VDTQEKDGGGEDEAPEFVLKEKPSVTFDDIAGLEEAKKAIREAIVFPVKRPDLFP---LG 143
Query: 580 PPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIF----RK 635
P+G+LLYGPPGTGKT+LA AVA E F+ + ++SKW+GE EK ++++F K
Sbjct: 144 WPRGILLYGPPGTGKTMLASAVANEIDGEFLYVDAANIMSKWLGEGEKNVKKLFNYARNK 203
Query: 636 ARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSG---VVVIAATN 692
A++ P +IFIDE+DA+ G+ G +V R+ NQ L EMDG+ + V VIAATN
Sbjct: 204 AKEGKPVVIFIDEVDALLGVHGSEVGGEV--RVRNQFLKEMDGIQDKGSRLHVYVIAATN 261
Query: 693 RPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTG 752
+P LD +R RF + I VP P + R + +++TR + LA DVDL LA EGYTG
Sbjct: 262 KPWKLDEPFIR--RFQKRIYVPLPSRETRKRMLEMYTRKLRLAGDVDLDRLAEMLEGYTG 319
Query: 753 ADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYM 812
+DIA + REA M +R EL E+ + + +T DF+ L++ +PSV +
Sbjct: 320 SDIADIVREAYMATVR---------ELFEKGKVDGEPRPITMSDFQEILRRRRPSVDHRL 370
Query: 813 MEYYRQFEE 821
++ Y ++ E
Sbjct: 371 LKTYEEWTE 379
Score = 165 bits (414), Expect = 2e-39
Identities = 110/286 (38%), Positives = 165/286 (57%), Gaps = 20/286 (6%)
Query: 201 VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKT 260
V +EK P VT++DI GL+EA + IRE + P+K P+LF + P+G+LLYGPPGTGKT
Sbjct: 104 VLKEK-PSVTFDDIAGLEEAKKAIREAIVFPVKRPDLFP---LGWPRGILLYGPPGTGKT 159
Query: 261 LLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIF----KEAEENAPAIIFIDEIDA 316
+LA AVANE + F+ ++ IMSK+ GE E+ ++++F +A+E P +IFIDE+DA
Sbjct: 160 MLASAVANEIDGEFLYVDAANIMSKWLGEGEKNVKKLFNYARNKAKEGKPVVIFIDEVDA 219
Query: 317 -IAPKREEVVGEVEKRVVSQLLTLMDGLKSRGK---VIVIAATNRPDALDPALRRPGRFD 372
+ EV GEV RV +Q L MDG++ +G V VIAATN+P LD R RF
Sbjct: 220 LLGVHGSEVGGEV--RVRNQFLKEMDGIQDKGSRLHVYVIAATNKPWKLDEPFIR--RFQ 275
Query: 373 REIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFD---KEKIKKII 429
+ I V +P ++ RK +L+++TR + + D + + + + L+ D D + + +
Sbjct: 276 KRIYVPLPSRETRKRMLEMYTRKLRLAGDVDLDRLAEMLEGYTGSDIADIVREAYMATVR 335
Query: 430 EKVSKAKSEEEIKDILREDRNLYIEVRTKLID-KLLDELAEVTHGF 474
E K K + E + I D + R +D +LL E T F
Sbjct: 336 ELFEKGKVDGEPRPITMSDFQEILRRRRPSVDHRLLKTYEEWTERF 381
>gi|6322704 putative ATPase, 26S protease subunit component; Rpt1p
[Saccharomyces cerevisiae]
>gi|464862|sp|P33299|PRS7_YEAST 26S PROTEASE REGULATORY
SUBUNIT 7 HOMOLOG (CIM5 PROTEIN) (TAT-BINDING HOMOLOG 3)
>gi|422126|pir||S34354 26S proteasome regulatory
particle chain RPT1 - yeast (Saccharomyces cerevisiae)
>gi|313882|emb|CAA51973.1| (X73571) 26S proteasome
subunit Rpt1 [Saccharomyces cerevisiae]
>gi|410510|emb|CAA80470.1| (Z22817) putative ATPase
[Saccharomyces cerevisiae] >gi|486249|emb|CAA81986.1|
(Z28145) ORF YKL145w [Saccharomyces cerevisiae]
>gi|738777|prf||2001430A 26S protease [Saccharomyces
cerevisiae]
Length = 467
Score = 215 bits (542), Expect = 2e-54
Identities = 120/294 (40%), Positives = 169/294 (56%), Gaps = 25/294 (8%)
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
++PS + E P+V + D+GG +D ++LRE VE PL P+ F LGI PPKG+LLYG
Sbjct: 191 IDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYG 250
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PPGTGKTL A+AVA + A FI + G E++ K+VGE + +RE+F AR IIF DE
Sbjct: 251 PPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDE 310
Query: 649 IDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGR 706
IDA+ AR A G+ R + +L+T++DG + V+ ATNRP+ LDPALLRPGR
Sbjct: 311 IDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGR 370
Query: 707 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNA 766
DR + PD + R IF++H++ M + + + ++R TGA++ +VC EA M A
Sbjct: 371 IDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFA 430
Query: 767 LRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKV-----KPSVTKYMMEY 815
+R + + T KDF A+ KV K S T M+Y
Sbjct: 431 IR------------------ARRKVATEKDFLKAVDKVISGYKKFSSTSRYMQY 466
Score = 214 bits (540), Expect = 3e-54
Identities = 110/233 (47%), Positives = 151/233 (64%), Gaps = 7/233 (3%)
Query: 182 GIVQITYNTEV----EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPEL 237
G+ + YN E+ + P + E+ P+VTY D+GG K+ IEK+RE+VELPL PE
Sbjct: 175 GVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPER 234
Query: 238 FERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREI 297
F LGI+PPKG+LLYGPPGTGKTL A+AVAN +A FI + G E++ KY GE +RE+
Sbjct: 235 FATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVREL 294
Query: 298 FKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAA 354
F+ A IIF DEIDA+ R + G+ E +R + +L+T +DG RG + V+ A
Sbjct: 295 FEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFA 354
Query: 355 TNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETV 407
TNRP+ LDPAL RPGR DR++E +PD +GR I +IH++ M +E E +
Sbjct: 355 TNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELI 407
>gb|AAF49987.1| (AE003543) CG7257 gene product [Drosophila melanogaster]
Length = 398
Score = 215 bits (542), Expect = 2e-54
Identities = 136/364 (37%), Positives = 199/364 (54%), Gaps = 25/364 (6%)
Query: 421 DKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTH--GFVGAD 478
D E+++ + +K EI+ L+ R+ Y V + +K D+L + VG
Sbjct: 11 DDERVRALTNYRTKLLEHREIESKLKALRDKYKVVNAEY-EKSEDDLKALQSVGQMVGEI 69
Query: 479 LAALAREAAMVVL----------RRLIKEGKINPEAETIPREVLEELKVTKADFYEAL-K 527
L L + +V RR I + K+ P L VT L +
Sbjct: 70 LKQLTPDNFIVKASNGPRYVVGCRRQINKEKLKPGTRVA-------LDVTTLTIMRYLPR 122
Query: 528 MVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLY 587
V+P + NV++ +IGGL +ELRE +E PL P F R+GI+PPKG LLY
Sbjct: 123 EVDPLVYNMTHEDPGNVNYAEIGGLGQQIRELREVIELPLLNPDIFLRVGISPPKGCLLY 182
Query: 588 GPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFID 647
GPPGTGKTLLA+A+A++ ANF+ + ++ K++GES + IRE+F AR P IIF+D
Sbjct: 183 GPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARDHQPCIIFMD 242
Query: 648 EIDAIAPAR---GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRP 704
EIDAI R GT+ ++ R + +LL +MDG V +I ATNRPD LDPALLRP
Sbjct: 243 EIDAIGGRRFSEGTSADREI-QRTLMELLNQMDGFDALGQVKMIMATNRPDTLDPALLRP 301
Query: 705 GRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAM 764
GR DR + +P P+E AR +I K+H + ++D + + + ++ + GAD+ +C EA +
Sbjct: 302 GRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDLFNGADLRNICTEAGL 361
Query: 765 NALR 768
ALR
Sbjct: 362 FALR 365
Score = 200 bits (503), Expect = 6e-50
Identities = 103/220 (46%), Positives = 147/220 (66%), Gaps = 3/220 (1%)
Query: 193 EVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLY 252
EV P + E V Y +IGGL + I ++RE++ELPL +P++F R+GI PPKG LLY
Sbjct: 123 EVDPLVYNMTHEDPGNVNYAEIGGLGQQIRELREVIELPLLNPDIFLRVGISPPKGCLLY 182
Query: 253 GPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFID 312
GPPGTGKTLLA+A+A++ +A F+ + I+ KY GES +RE+F A ++ P IIF+D
Sbjct: 183 GPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARDHQPCIIFMD 242
Query: 313 EIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPG 369
EIDAI +R E + E +R + +LL MDG + G+V +I ATNRPD LDPAL RPG
Sbjct: 243 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDALGQVKMIMATNRPDTLDPALLRPG 302
Query: 370 RFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIK 409
R DR++E+ +P++ R +IL+IH + + + E V+K
Sbjct: 303 RLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDYEAVVK 342
>gi|6324691 26S protease regulatory subunit; Rpt5p [Saccharomyces cerevisiae]
>gi|464859|sp|P33297|PRSA_YEAST 26S PROTEASE REGULATORY
SUBUNIT 6A (TAT-BINDING PROTEIN HOMOLOG 1) (TBP-1)
>gi|626983|pir||S46605 26S proteasome regulatory
particle chain RPT5 - yeast (Saccharomyces cerevisiae)
>gi|313878|emb|CAA51971.1| (X73569) yeast tat-binding
analog [Saccharomyces cerevisiae]
>gi|1050819|emb|CAA62114.1| (X90518) ORF O3258
[Saccharomyces cerevisiae] >gi|1164962|emb|CAA64037.1|
(X94335) YOR3258w [Saccharomyces cerevisiae]
>gi|1420311|emb|CAA99315.1| (Z75025) ORF YOR117w
[Saccharomyces cerevisiae]
Length = 434
Score = 214 bits (539), Expect = 4e-54
Identities = 137/415 (33%), Positives = 219/415 (52%), Gaps = 26/415 (6%)
Query: 381 DKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEE 440
D + +EIL + T+ + + EL++ + ++KI + K K+ +
Sbjct: 15 DDELDQEILNLSTQELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQ 74
Query: 441 IKDILREDRNLYIEVR--TKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRR----- 493
+ ++ +EV ++ DK E + G V D A+ + A + R
Sbjct: 75 LPYLVAN----VVEVMDMNEIEDKENSE-STTQGGNVNLDNTAVGKAAVVKTSSRQTVFL 129
Query: 494 ----LIKEGKINP-EAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDD 548
L+ K+ P + + ++ L ++F +K +E E P + D
Sbjct: 130 PMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVD-------EKPTETYSD 182
Query: 549 IGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQAN 608
+GGL+ +EL EA+ P+K FK +GI PKG L+YGPPGTGKTLLA+A A ++ A
Sbjct: 183 VGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT 242
Query: 609 FIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE--GEKVTD 666
F+ + P+++ ++GE K +R+ F A++ +P IIFIDE+DAI R +E G++
Sbjct: 243 FLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQ 302
Query: 667 RIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFK 726
R + +LL ++DG + V V+AATNR D+LDPALLR GR DR I P P E +R +I +
Sbjct: 303 RTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQ 362
Query: 727 VHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE 781
+H+R M DD++ +ELAR T+ + GA + AV EA M ALR + + E+ E
Sbjct: 363 IHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVE 417
Score = 196 bits (493), Expect = 9e-49
Identities = 107/251 (42%), Positives = 158/251 (62%), Gaps = 14/251 (5%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + +++++T+P +E + +A+EV E+ P TY D+GGL + IE++
Sbjct: 146 VGVNKDSYLILDTLP---------SEFDSRVKAMEVDEK--PTETYSDVGGLDKQIEELV 194
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E + LP+K + F+ +GI PKG L+YGPPGTGKTLLA+A A + NA F+ + P+++
Sbjct: 195 EAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM 254
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
Y GE + +R+ F A+E AP IIFIDE+DAI KR E G+ E +R + +LL +DG
Sbjct: 255 YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
S +V V+AATNR D LDPAL R GR DR+IE +P + R +ILQIH+R M + D
Sbjct: 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI 374
Query: 403 EKETVIKALKE 413
+ + ++ E
Sbjct: 375 NWQELARSTDE 385
>sp|Q09803|SKD1_SCHPO SUPRESSOR PROTEIN OF BEM1/BED5 DOUBLE MUTANTS
>gi|2130392|pir||S62461 probable AAA-family ATPase,
supressor protein - fission yeast (Schizosaccharomyces
pombe) >gi|7492345|pir||T38572 probable AAA-family
ATPase - fission yeast (Schizosaccharomyces pombe)
>gi|496311|gb|AAA35347.1| (L33456) supressor protein
[Schizosaccharomyces pombe] >gi|1019404|emb|CAA91171.1|
(Z54354) putative AAA-family ATPase [Schizosaccharomyces
pombe]
Length = 432
Score = 213 bits (537), Expect = 6e-54
Identities = 127/321 (39%), Positives = 189/321 (58%), Gaps = 33/321 (10%)
Query: 527 KMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLL 586
K + + +L+E PNV WDDI GLE+ K+ L+E V P+K P+ F G P G+LL
Sbjct: 109 KKLRSALTSAILVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILL 167
Query: 587 YGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFI 646
YGPPGTGK+ LAKAVATE+ + F +I +++SKW+GESE+ +R++F AR+ P+IIFI
Sbjct: 168 YGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFI 227
Query: 647 DEIDAIAPARGTAEGEKVTDRIINQLLTEMDGL-VENSGVVVIAATNRPDILDPALLRPG 705
DEID++ +R E E + RI + L +M+G+ + SGV+V+ ATN P LD A+ R
Sbjct: 228 DEIDSLCGSRSEGESES-SRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRR-- 284
Query: 706 RFDRLILVPAPDEKARFEIFKVHTRGMPL-ADDVDLKELARRTEGYTGADIAAVCREAAM 764
RF++ I +P P+ AR +F+++ +P D KELA+ T+GY+G+DI+ V R+A M
Sbjct: 285 RFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDISIVVRDAIM 344
Query: 765 NALRR------------------AVAKLSPEE--------LEEESEKFLKSLIVTRKDFE 798
+RR V SP + LE E ++ + R DF
Sbjct: 345 EPVRRIHTATHFKEVYDNKSNRTLVTPCSPGDPDAFESSWLEVNPEDIMEPKLTVR-DFY 403
Query: 799 VALKKVKPSVTKYMMEYYRQF 819
A++KVKP++ +E + QF
Sbjct: 404 SAVRKVKPTLNAGDIEKHTQF 424
Score = 159 bits (399), Expect = 9e-38
Identities = 84/194 (43%), Positives = 127/194 (65%), Gaps = 4/194 (2%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAV 266
P V ++DI GL+ A E ++E V LP+K P+LF G +P G+LLYGPPGTGK+ LAKAV
Sbjct: 124 PNVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPGTGKSYLAKAV 182
Query: 267 ANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVG 326
A EA + F +I+ +++SK+ GESE +R++F+ A E P+IIFIDEID++ R E
Sbjct: 183 ATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEGES 242
Query: 327 EVEKRVVSQLLTLMDGL-KSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGR 385
E +R+ ++ L M+G+ K V+V+ ATN P LD A+RR RF++ I + +P+ R
Sbjct: 243 ESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRR--RFEKRIYIPLPNAHAR 300
Query: 386 KEILQIHTRGMPIE 399
+ +++ +P E
Sbjct: 301 ARMFELNVGKIPSE 314
>gb|AAF91247.1|AF227503_1 (AF227503) proteasome regulatory ATPase subunit 5 [Trypanosoma
brucei]
Length = 445
Score = 212 bits (533), Expect = 2e-53
Identities = 127/383 (33%), Positives = 210/383 (54%), Gaps = 20/383 (5%)
Query: 403 EKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDK 462
E+ T+ L L ++ +++++ + S E+ D+ +D++ +++
Sbjct: 62 EERTMSSELAGLRREVEESQKRVRDSNKLPYLVASIAEVLDLEADDQD---------VEE 112
Query: 463 LLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAET-IPREVLEELKVTKAD 521
L + H A + +R+ + + L+ K++P+ + ++ L+ +
Sbjct: 113 LNVGKKKSRHPQKSAIIKTSSRQTVFLPVVGLVDANKLSPQDLVGVNKDTFLVLEELPPE 172
Query: 522 FYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPP 581
+ +K +E ++E P + D+GGL+ E+ EAV P+ + + R+GI PP
Sbjct: 173 YDSRVKAME-------IVEKPKEKYTDVGGLDKQINEMIEAVVLPITEKEKYVRIGIKPP 225
Query: 582 KGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASP 641
KGVLLYG PGTGKT+LA+A A + A F+ + GP+++ ++GE + +R+ F A++ +P
Sbjct: 226 KGVLLYGSPGTGKTMLARACAASTDACFLRLAGPQLVQMYIGEGARILRDAFALAKKRAP 285
Query: 642 AIIFIDEIDAIAPAR---GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILD 698
IIFIDE+DAI R G+ G + R + +LL+ +DG V VIAATNR D+LD
Sbjct: 286 TIIFIDELDAIGSRRSDEGSKHGSREVQRRMLELLSLLDGFGSTDDVKVIAATNRIDVLD 345
Query: 699 PALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAV 758
PALLR GR DR + PDE+AR I ++H+R M L DV+ +E++R TE GA + AV
Sbjct: 346 PALLRRGRIDRKVEFTLPDEEARAHILQIHSRRMALHGDVNFEEISRMTEDMNGAQLKAV 405
Query: 759 CREAAMNALRRAVAKLSPEELEE 781
C EA M ALR ++ E+ E
Sbjct: 406 CVEAGMLALRNERVYVAHEDFAE 428
Score = 191 bits (480), Expect = 3e-47
Identities = 108/254 (42%), Positives = 160/254 (62%), Gaps = 17/254 (6%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + F+V+ +P Y++ V+ A+E+ E+ P+ Y D+GGL + I ++
Sbjct: 156 VGVNKDTFLVLEELPP-----EYDSRVK----AMEIVEK--PKEKYTDVGGLDKQINEMI 204
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E V LP+ E + R+GI+PPKGVLLYG PGTGKT+LA+A A +A F+ + GP+++
Sbjct: 205 EAVVLPITEKEKYVRIGIKPPKGVLLYGSPGTGKTMLARACAASTDACFLRLAGPQLVQM 264
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVG-----EVEKRVVSQLLTLM 340
Y GE LR+ F A++ AP IIFIDE+DAI +R + EV++R++ +LL+L+
Sbjct: 265 YIGEGARILRDAFALAKKRAPTIIFIDELDAIGSRRSDEGSKHGSREVQRRML-ELLSLL 323
Query: 341 DGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEP 400
DG S V VIAATNR D LDPAL R GR DR++E +PD++ R ILQIH+R M +
Sbjct: 324 DGFGSTDDVKVIAATNRIDVLDPALLRRGRIDRKVEFTLPDEEARAHILQIHSRRMALHG 383
Query: 401 DFEKETVIKALKEL 414
D E + + +++
Sbjct: 384 DVNFEEISRMTEDM 397
>pir||S39349 MSS1 protein homolog - mouse
Length = 433
Score = 210 bits (528), Expect = 7e-53
Identities = 117/285 (41%), Positives = 162/285 (56%), Gaps = 20/285 (7%)
Query: 529 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYG 588
++P+ + E + + D+GG ++ ++L E VE PL +P+ LGI PPKGVLL+G
Sbjct: 157 IDPTVTMMQVEEKLDFTYSDVGGCKEQIEKLLEVVETPLLHPERLVNLGIEPPKGVLLFG 216
Query: 589 PPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDE 648
PPGTGKTL A+AVA + A FI + G E++ K+VGE + +RE+F AR +IF DE
Sbjct: 217 PPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDE 276
Query: 649 IDAIAPAR--GTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGR 706
+DAI AR A G+ R + +L+ ++DG + V+ ATNRPD LDPAL+RPGR
Sbjct: 277 MDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGR 336
Query: 707 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNA 766
DR I PD + R IFK+H R M + D+ + LAR TGA+I +VC EA M A
Sbjct: 337 LDRKIEFSLPDLEGRTHIFKIHARSMSVERDIGFELLARLCPNSTGAEIRSVCTEAGMFA 396
Query: 767 LRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKY 811
+R + I T KDF A+ KV S K+
Sbjct: 397 IR------------------ARRKIATEKDFLEAVNKVIKSYAKF 423
Score = 208 bits (524), Expect = 2e-52
Identities = 115/251 (45%), Positives = 151/251 (59%), Gaps = 14/251 (5%)
Query: 162 EAMSVGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAI 221
E M VG K+ + +P I +VE EK+ + TY D+GG KE I
Sbjct: 136 EGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVE----------EKL-DFTYSDVGGCKEQI 184
Query: 222 EKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPE 281
EK+ E+VE PL HPE LGIEPPKGVLL+GPPGTGKTL A+AVAN +A FI + G E
Sbjct: 185 EKLLEVVETPLLHPERLVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSE 244
Query: 282 IMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLT 338
++ KY GE +RE+F+ A +IF DE+DAI R + G+ E +R + +L+
Sbjct: 245 LVQKYVGEGARMVRELFEMARTKKACLIFFDEMDAIGGARFDDGAGGDNEVQRTMLELIN 304
Query: 339 LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPI 398
+DG RG + V+ ATNRPD LDPAL RPGR DR+IE +PD +GR I +IH R M +
Sbjct: 305 QLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSV 364
Query: 399 EPDFEKETVIK 409
E D E + +
Sbjct: 365 ERDIGFELLAR 375
>gb|AAF52059.1| (AE003603) katanin-60 gene product [Drosophila melanogaster]
Length = 554
Score = 208 bits (525), Expect = 2e-52
Identities = 119/290 (41%), Positives = 180/290 (62%), Gaps = 10/290 (3%)
Query: 535 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPP-KGVLLYGPPGTG 593
R++L + P V W DI L D K+ L EAV P+ P FK GI P KGVL+ GPPGTG
Sbjct: 263 RDILQKDPKVRWSDIADLHDAKRLLEEAVVLPMLMPDYFK--GIRRPWKGVLMVGPPGTG 320
Query: 594 KTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIA 653
KT+LAKAVATE F + + SK+ GESEK +R +F AR +P+ IFIDEID++
Sbjct: 321 KTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPSTIFIDEIDSLC 380
Query: 654 PARGTAEGEKVTDRIINQLLTEMDGL----VENSGVVVIAATNRPDILDPALLRPGRFDR 709
RG+ + + R+ ++LL +MDG+ + V+V+AATN P +D AL R R ++
Sbjct: 381 SRRGSESEHEASRRVKSELLVQMDGVGGGEEQAKVVMVLAATNFPWDIDEALRR--RLEK 438
Query: 710 LILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRR 769
I +P P ++ R + K++ R + + D VDL +A +GY+GADI VCREA+M ++RR
Sbjct: 439 RIYIPLPSDEGREALLKINLREVKVDDSVDLTYVANELKGYSGADITNVCREASMMSMRR 498
Query: 770 AVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQF 819
+A L+PE++ + + + + L V+ KDF A+ + SV++ ++ Y ++
Sbjct: 499 KIAGLTPEQIRQLATEEV-DLPVSNKDFNEAMSRCNKSVSRADLDKYEKW 547
Score = 146 bits (365), Expect = 9e-34
Identities = 90/215 (41%), Positives = 132/215 (60%), Gaps = 10/215 (4%)
Query: 204 EKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPP-KGVLLYGPPGTGKTLL 262
+K P+V + DI L +A + E V LP+ P+ F+ GI P KGVL+ GPPGTGKT+L
Sbjct: 267 QKDPKVRWSDIADLHDAKRLLEEAVVLPMLMPDYFK--GIRRPWKGVLMVGPPGTGKTML 324
Query: 263 AKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR- 321
AKAVA E F ++ + SKY GESE+ +R +F+ A AP+ IFIDEID++ +R
Sbjct: 325 AKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPSTIFIDEIDSLCSRRG 384
Query: 322 EEVVGEVEKRVVSQLLTLMDGL---KSRGKVI-VIAATNRPDALDPALRRPGRFDREIEV 377
E E +RV S+LL MDG+ + + KV+ V+AATN P +D ALRR R ++ I +
Sbjct: 385 SESEHEASRRVKSELLVQMDGVGGGEEQAKVVMVLAATNFPWDIDEALRR--RLEKRIYI 442
Query: 378 GVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALK 412
+P +GR+ +L+I+ R + ++ + V LK
Sbjct: 443 PLPSDEGREALLKINLREVKVDDSVDLTYVANELK 477
>gb|AAF34687.1|AF223064_1 (AF223064) putative microtubule severing protein katanin p60
subunit [Drosophila melanogaster]
Length = 571
Score = 207 bits (521), Expect = 5e-52
Identities = 118/289 (40%), Positives = 178/289 (60%), Gaps = 9/289 (3%)
Query: 535 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPP-KGVLLYGPPGTG 593
R++L + P V W DI L D K+ L EAV P+ P FK GI P KGVL+ GP GTG
Sbjct: 281 RDILQKDPKVRWSDIADLHDAKRLLEEAVVLPMLMPDYFK--GIRRPWKGVLMVGPSGTG 338
Query: 594 KTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIA 653
KT+LAKAVATE F + + SK+ GESEK +R +F AR +P+ IFIDEID++
Sbjct: 339 KTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPSTIFIDEIDSLC 398
Query: 654 PARGTAEGEKVTDRIINQLLTEMDGLVENSG---VVVIAATNRPDILDPALLRPGRFDRL 710
RG+ + + R+ ++LL +MDG+ V+V+AATN P +D AL R R ++
Sbjct: 399 SRRGSESEHEASRRVKSELLVQMDGVAREEQAKVVMVLAATNFPWDIDEALRR--RLEKR 456
Query: 711 ILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRA 770
I +P P ++ R + K++ R + + D VDL +A +GY+GADI VCREA+M ++RR
Sbjct: 457 IYIPLPSDEGREALLKINLREVKVDDSVDLTYVANELKGYSGADITNVCREASMMSMRRK 516
Query: 771 VAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQF 819
+A L+PE++ + + + + L V+ KDF A+ + SV++ ++ Y ++
Sbjct: 517 IAGLTPEQIRQLATEEV-DLPVSNKDFNEAMSRCNKSVSRADLDKYEKW 564
Score = 143 bits (358), Expect = 6e-33
Identities = 89/214 (41%), Positives = 131/214 (60%), Gaps = 9/214 (4%)
Query: 204 EKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPP-KGVLLYGPPGTGKTLL 262
+K P+V + DI L +A + E V LP+ P+ F+ GI P KGVL+ GP GTGKT+L
Sbjct: 285 QKDPKVRWSDIADLHDAKRLLEEAVVLPMLMPDYFK--GIRRPWKGVLMVGPSGTGKTML 342
Query: 263 AKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR- 321
AKAVA E F ++ + SKY GESE+ +R +F+ A AP+ IFIDEID++ +R
Sbjct: 343 AKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPSTIFIDEIDSLCSRRG 402
Query: 322 EEVVGEVEKRVVSQLLTLMDGL--KSRGKVI-VIAATNRPDALDPALRRPGRFDREIEVG 378
E E +RV S+LL MDG+ + + KV+ V+AATN P +D ALRR R ++ I +
Sbjct: 403 SESEHEASRRVKSELLVQMDGVAREEQAKVVMVLAATNFPWDIDEALRR--RLEKRIYIP 460
Query: 379 VPDKQGRKEILQIHTRGMPIEPDFEKETVIKALK 412
+P +GR+ +L+I+ R + ++ + V LK
Sbjct: 461 LPSDEGREALLKINLREVKVDDSVDLTYVANELK 494
>gi|6325431 AAA-type ATPase; Vps4p [Saccharomyces cerevisiae]
>gi|1706647|sp|P52917|VPS4_YEAST VACUOLAR PROTEIN
SORTING-ASSOCIATED PROTEIN VPS4 (END13 PROTEIN)
>gi|2131247|pir||S59831 END13 protein - yeast
(Saccharomyces cerevisiae) >gi|786322|gb|AAB68107.1|
(U25842) Similar to several members of the
Cdc48/Pas1/Sec18 family of proteins (Swiss Prot.
accession numbers P25694, P24004, P18759) [Saccharomyces
cerevisiae]
Length = 437
Score = 206 bits (520), Expect = 6e-52
Identities = 121/310 (39%), Positives = 181/310 (58%), Gaps = 31/310 (10%)
Query: 537 VLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTL 596
+L E PNV W+D+ GLE K+ L+EAV P+K+P FK P G+LLYGPPGTGK+
Sbjct: 123 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSY 181
Query: 597 LAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR 656
LAKAVATE+ + F ++ +++SKW+GESEK ++++F AR+ P+IIFIDE+DA+ R
Sbjct: 182 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR 241
Query: 657 GTAEGEKVTDRIINQLLTEMDGLVENS-GVVVIAATNRPDILDPALLRPGRFDRLILVPA 715
G E E + RI +LL +M+G+ +S GV+V+ ATN P LD A+ R RF+R I +P
Sbjct: 242 GEGESE-ASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPL 298
Query: 716 PDEKARFEIFKVHTRGMP-LADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKL 774
PD AR +F+++ P + D + L TEGY+G+DIA V ++A M +R+ +
Sbjct: 299 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 358
Query: 775 SPEELEEESEKF-------------------------LKSLIVTRKDFEVALKKVKPSVT 809
+++ E ++ LK +T KDF A+K +P+V
Sbjct: 359 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 418
Query: 810 KYMMEYYRQF 819
+ + QF
Sbjct: 419 EDDLLKQEQF 428
Score = 168 bits (422), Expect = 2e-40
Identities = 111/335 (33%), Positives = 173/335 (51%), Gaps = 39/335 (11%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAV 266
P V +ED+ GL+ A E ++E V LP+K P LF+ +P G+LLYGPPGTGK+ LAKAV
Sbjct: 128 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAV 186
Query: 267 ANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVG 326
A EAN+ F +++ +++SK+ GESE+ ++++F A EN P+IIFIDE+DA+ R E
Sbjct: 187 ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGES 246
Query: 327 EVEKRVVSQLLTLMDGLKSRGK-VIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGR 385
E +R+ ++LL M+G+ + + V+V+ ATN P LD A+RR RF+R I + +PD R
Sbjct: 247 EASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAAR 304
Query: 386 KEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDIL 445
+ +I+ P E + A+ E +++ + K +S KD+
Sbjct: 305 TTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVS 364
Query: 446 REDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAE 505
ED DE ++T G D G I
Sbjct: 365 TED----------------DETRKLTPCSPGDD-------------------GAIEMSWT 389
Query: 506 TIPREVLEELKVTKADFYEALKMVEPSALREVLIE 540
I + L+E +T DF +A+K P+ + L++
Sbjct: 390 DIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLK 424
>emb|CAA63364.1| (X92680) allelic to VPS4 [Saccharomyces cerevisiae]
Length = 437
Score = 206 bits (520), Expect = 6e-52
Identities = 121/310 (39%), Positives = 181/310 (58%), Gaps = 31/310 (10%)
Query: 537 VLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTL 596
+L E PNV W+D+ GLE K+ L+EAV P+K+P FK P G+LLYGPPGTGK+
Sbjct: 123 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSY 181
Query: 597 LAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR 656
LAKAVATE+ + F ++ +++SKW+GESEK ++++F AR+ P+IIFIDE+DA+ R
Sbjct: 182 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR 241
Query: 657 GTAEGEKVTDRIINQLLTEMDGLVENS-GVVVIAATNRPDILDPALLRPGRFDRLILVPA 715
G E E + RI +LL +M+G+ +S GV+V+ ATN P LD A+ R RF+R I +P
Sbjct: 242 GEGESE-ASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPL 298
Query: 716 PDEKARFEIFKVHTRGMP-LADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKL 774
PD AR +F+++ P + D + L TEGY+G+DIA V ++A M +R+ +
Sbjct: 299 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 358
Query: 775 SPEELEEESEKF-------------------------LKSLIVTRKDFEVALKKVKPSVT 809
+++ E ++ LK +T KDF A+K +P+V
Sbjct: 359 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 418
Query: 810 KYMMEYYRQF 819
+ + QF
Sbjct: 419 EDDLLKQEQF 428
Score = 168 bits (422), Expect = 2e-40
Identities = 111/335 (33%), Positives = 173/335 (51%), Gaps = 39/335 (11%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAV 266
P V +ED+ GL+ A E ++E V LP+K P LF+ +P G+LLYGPPGTGK+ LAKAV
Sbjct: 128 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAV 186
Query: 267 ANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVG 326
A EAN+ F +++ +++SK+ GESE+ ++++F A EN P+IIFIDE+DA+ R E
Sbjct: 187 ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGES 246
Query: 327 EVEKRVVSQLLTLMDGLKSRGK-VIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGR 385
E +R+ ++LL M+G+ + + V+V+ ATN P LD A+RR RF+R I + +PD R
Sbjct: 247 EASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAAR 304
Query: 386 KEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDIL 445
+ +I+ P E + A+ E +++ + K +S KD+
Sbjct: 305 TTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVS 364
Query: 446 REDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAE 505
ED DE ++T G D G I
Sbjct: 365 TED----------------DETRKLTPCSPGDD-------------------GAIEMSWT 389
Query: 506 TIPREVLEELKVTKADFYEALKMVEPSALREVLIE 540
I + L+E +T DF +A+K P+ + L++
Sbjct: 390 DIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLK 424
>sp|O42587|PRSA_XENLA 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 6) (TBP-6)
>gi|2648047|emb|CAA71487.1| (Y10461) TBP6 protein
[Xenopus laevis]
Length = 405
Score = 206 bits (520), Expect = 6e-52
Identities = 115/271 (42%), Positives = 162/271 (59%), Gaps = 20/271 (7%)
Query: 505 ETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVE 564
ET+P E +K + D E P + DIGGL+ QEL EA+
Sbjct: 146 ETLPTEYDSRVKAMEVD------------------ERPTEQYSDIGGLDKQIQELVEAIV 187
Query: 565 WPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGE 624
P+ + + F+ LGI PPKGVL+YGPPGTGKTLLA+A A +++A F+ + GP+++ ++G+
Sbjct: 188 LPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 247
Query: 625 SEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAE--GEKVTDRIINQLLTEMDGLVEN 682
K +R+ F A++ +P+IIFIDE+DAI R +E G++ R + +LL ++DG N
Sbjct: 248 GAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPN 307
Query: 683 SGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKE 742
V VIAATNR DILDPALLR GR DR I P P+E+AR I ++H+R M ++ DV+ +E
Sbjct: 308 MQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEE 367
Query: 743 LARRTEGYTGADIAAVCREAAMNALRRAVAK 773
LAR EA M ALRR +
Sbjct: 368 LARCPTISMALSAKQFGVEAGMIALRRGATE 398
Score = 204 bits (514), Expect = 3e-51
Identities = 110/247 (44%), Positives = 159/247 (63%), Gaps = 14/247 (5%)
Query: 166 VGFGELKFMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIR 225
VG + ++++ T+P TE + +A+EV E P Y DIGGL + I+++
Sbjct: 135 VGVNKDSYLILETLP---------TEYDSRVKAMEVDER--PTEQYSDIGGLDKQIQELV 183
Query: 226 EMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 285
E + LP+ H E FE LGI+PPKGVL+YGPPGTGKTLLA+A A + A F+ + GP+++
Sbjct: 184 EAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQM 243
Query: 286 YYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKR--EEVVGEVE-KRVVSQLLTLMDG 342
+ G+ + +R+ F A+E AP+IIFIDE+DAI KR E G+ E +R + +LL +DG
Sbjct: 244 FIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 303
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDF 402
+ +V VIAATNR D LDPAL R GR DR+IE +P+++ R I+QIH+R M + PD
Sbjct: 304 FQPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDV 363
Query: 403 EKETVIK 409
E + +
Sbjct: 364 NYEELAR 370
>pir||T41657 probable metallopeptidase - fission yeast (Schizosaccharomyces
pombe) >gi|3136033|emb|CAA19064.1| (AL023590) putative
metallopeptidase [Schizosaccharomyces pombe]
Length = 709
Score = 205 bits (517), Expect = 1e-51
Identities = 113/249 (45%), Positives = 156/249 (62%), Gaps = 6/249 (2%)
Query: 543 NVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVA 602
NV + D+ G+++ K+EL E V++ L+ P F RLG P+GVLL GPPGTGKT+LA+AVA
Sbjct: 263 NVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVA 321
Query: 603 TESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGE 662
E+ F + G + +VG KR+RE+F AR+ +P+IIFIDE+DAI R +
Sbjct: 322 GEANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELDAIGQKRNARDAA 381
Query: 663 KVTDRIINQLLTEMDGLVENSG----VVVIAATNRPDILDPALLRPGRFDRLILVPAPDE 718
+ + +NQLL ++DG +N VV I ATN P+ LDPAL RPGRFDR I VP PD
Sbjct: 382 HMR-QTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDV 440
Query: 719 KARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEE 778
+ R I HTR +PL DVDL +AR T G+ GAD+A + +AA+ A + +S +
Sbjct: 441 RGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAGADLANLINQAAVYASKNLSTAVSMRD 500
Query: 779 LEEESEKFL 787
LE ++ L
Sbjct: 501 LEWSKDRIL 509
Score = 178 bits (447), Expect = 2e-43
Identities = 112/288 (38%), Positives = 160/288 (54%), Gaps = 15/288 (5%)
Query: 130 PVVKGDIIVASGRSEMYYSSGTP-FDEIFR--GFFEAMSVG-FGELKFMVVNTIPKGIVQ 185
P + + S ++ +Y P F + FR F +SV + L M + G+
Sbjct: 187 PTIVSSALGTSSKTPVYVVVDEPRFTKFFRIFKFIAGLSVASYFVLLGMSIFAETSGLNN 246
Query: 186 ITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEP 245
I NT + E EE+ V + D+ G+ EA E++ E+V+ L+ P F RLG +
Sbjct: 247 IMTNTTEQ------EPMEERAINVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKL 299
Query: 246 PKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENA 305
P+GVLL GPPGTGKT+LA+AVA EAN F ++G + Y G +R+RE+F A + A
Sbjct: 300 PRGVLLTGPPGTGKTMLARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARKQA 359
Query: 306 PAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSR----GKVIVIAATNRPDAL 361
P+IIFIDE+DAI KR ++ ++QLL +DG V+ I ATN P++L
Sbjct: 360 PSIIFIDELDAIGQKRNARDAAHMRQTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESL 419
Query: 362 DPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIK 409
DPAL RPGRFDR I V +PD +GR IL HTR +P+ D + + +
Sbjct: 420 DPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIAR 467
>gb|AAF21428.1|AF165422_1 (AF165422) suppressor of K+ transport growth defect-like protein
[Mesembryanthemum crystallinum]
Length = 317
Score = 205 bits (515), Expect = 2e-51
Identities = 121/313 (38%), Positives = 185/313 (58%), Gaps = 33/313 (10%)
Query: 537 VLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAF--KRLGITPPKGVLLYGPPGTGK 594
++ E PNV W+D+ GLE KQ L+EAV P+K+P+ F KR P + LLYGPPGTGK
Sbjct: 4 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR---RPWRAFLLYGPPGTGK 60
Query: 595 TLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAP 654
+ LAKAVATE+ + F ++ +++SKW+GESEK + +F+ AR+++P+IIF+DEID++
Sbjct: 61 SYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCG 120
Query: 655 ARGTAEGEKVTDRIINQLLTEMDGLVEN-SGVVVIAATNRPDILDPALLRPGRFDRLILV 713
RG + + RI +LL +M G+ N V+V+AATN P LD A+ R RFD+ I +
Sbjct: 121 QRGEGNESEASRRIKTELLVQMQGVGHNDEKVLVLAATNTPYALDQAIRR--RFDKRIYI 178
Query: 714 PAPDEKARFEIFKVHTRGMP-LADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVA 772
P PD KAR +FKVH P + D + LAR+ EG++G+DIA ++ +R+
Sbjct: 179 PLPDLKARQHMFKVHLGDTPHNLTESDFEFLARKAEGFSGSDIAVCVKDVLFEPVRKTQD 238
Query: 773 KL-------------SPEE-------LEEESEKFLKSLIV----TRKDFEVALKKVKPSV 808
+ P + +++ + K L + IV R DFE L + +P+V
Sbjct: 239 AMFFYKTSDDVWVPCGPRQPGAVQITMQDLAAKGLAAKIVPPPIARTDFEKVLARQRPTV 298
Query: 809 TKYMMEYYRQFEE 821
+K +E + +F +
Sbjct: 299 SKSDLEVHERFTQ 311
Score = 155 bits (389), Expect = 1e-36
Identities = 88/208 (42%), Positives = 136/208 (65%), Gaps = 10/208 (4%)
Query: 201 VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKT 260
+RE+ P V + D+ GL+ A + ++E V LP+K P+ F P + LLYGPPGTGK+
Sbjct: 5 IREK--PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-RPWRAFLLYGPPGTGKS 61
Query: 261 LLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPK 320
LAKAVA EA++ F +++ +++SK+ GESE+ + +F+ A E+AP+IIF+DEID++ +
Sbjct: 62 YLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQ 121
Query: 321 R-EEVVGEVEKRVVSQLLTLMDGL-KSRGKVIVIAATNRPDALDPALRRPGRFDREIEVG 378
R E E +R+ ++LL M G+ + KV+V+AATN P ALD A+RR RFD+ I +
Sbjct: 122 RGEGNESEASRRIKTELLVQMQGVGHNDEKVLVLAATNTPYALDQAIRR--RFDKRIYIP 179
Query: 379 VPDKQGRKEILQIHTRGMP---IEPDFE 403
+PD + R+ + ++H P E DFE
Sbjct: 180 LPDLKARQHMFKVHLGDTPHNLTESDFE 207
>sp|P54816|TBP7_CAEEL TAT-BINDING HOMOLOG 7 >gi|7498868|pir||T20739 hypothetical protein
F11A10.1 - Caenorhabditis elegans
>gi|4008355|emb|CAA92596.1| (Z68297) Similarity to Yeast
TAT-binding homolog 7 (SW:TBP7_YEAST), contains
similarity to Pfam domain: PF00004 (ATPases associated
with various cellular activities (AAA)), Score=294.7,
E-value=3.7e-85, N=1; PF00439 (Bromodomain), Score=99.1,
E-value=7> >gi|4008373|emb|CAA92684.1| (Z68316)
Similarity to Yeast TAT-binding homolog 7
(SW:TBP7_YEAST), contains similarity to Pfam domain:
PF00004 (ATPases associated with various cellular
activities (AAA)), Score=294.7, E-value=3.7e-85, N=1;
PF00439 (Bromodomain), Score=99.1, E-value=7>
Length = 1242
Score = 204 bits (514), Expect = 3e-51
Identities = 118/297 (39%), Positives = 178/297 (59%), Gaps = 14/297 (4%)
Query: 543 NVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVA 602
+V +D +GGL Q L+E V +P+ YP+ F++ I PPKGV+ YGPPGTGKTL+A+A+A
Sbjct: 387 SVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRINPPKGVVFYGPPGTGKTLVARALA 446
Query: 603 TESQ--ANFIAI---RGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARG 657
E + AN +A +G + LSKWVGESE+++R +F +A P+IIF DEID +AP R
Sbjct: 447 NECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPVRS 506
Query: 658 TAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 717
+ + +++ I++ LL MDGL VVVI ATNR D LDPAL RPGRFDR + PD
Sbjct: 507 SKQ-DQIHASIVSTLLALMDGLDGRGEVVVIGATNRLDTLDPALRRPGRFDRELRFSLPD 565
Query: 718 EKARFEIFKVHT----RGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAK 773
AR +I +HT P+ + +D +A RT GY GAD+ +C EA + LR
Sbjct: 566 LNARRQILDIHTSKWEENKPIPETLD--AIAERTSGYCGADLKFLCTEAVLIGLRSRYPH 623
Query: 774 LSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGES 830
+ E + + ++ +T + F A++++ P+ + + R +E ++G++
Sbjct: 624 I--YMCSERLKLDVATIKITSEHFGHAMRRITPASRRDLTIPSRPLDERTSILLGDT 678
Score = 198 bits (498), Expect = 2e-49
Identities = 98/191 (51%), Positives = 132/191 (68%), Gaps = 7/191 (3%)
Query: 209 VTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVAN 268
V ++ +GGL I+ ++E+V P+ +PE+FE+ I PPKGV+ YGPPGTGKTL+A+A+AN
Sbjct: 388 VGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRINPPKGVVFYGPPGTGKTLVARALAN 447
Query: 269 EAN------AYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKRE 322
E A+F+ G + +SK+ GESE +LR +F +A P+IIF DEID +AP R
Sbjct: 448 ECRRGANKVAFFMR-KGADCLSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPVRS 506
Query: 323 EVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDK 382
++ +VS LL LMDGL RG+V+VI ATNR D LDPALRRPGRFDRE+ +PD
Sbjct: 507 SKQDQIHASIVSTLLALMDGLDGRGEVVVIGATNRLDTLDPALRRPGRFDRELRFSLPDL 566
Query: 383 QGRKEILQIHT 393
R++IL IHT
Sbjct: 567 NARRQILDIHT 577
>gb|AAD38581.1|AF145606_1 (AF145606) BcDNA.GH02678 [Drosophila melanogaster]
>gi|7293406|gb|AAF48783.1| (AE003507) BcDNA:GH02678 gene
product [Drosophila melanogaster]
Length = 442
Score = 203 bits (512), Expect = 5e-51
Identities = 125/320 (39%), Positives = 187/320 (58%), Gaps = 40/320 (12%)
Query: 537 VLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTL 596
++IE P V W D+ GL+ K+ L+EAV P+K+P+ F I P KG+LL+GPPGTGK+
Sbjct: 122 IVIEKPKVQWSDVAGLDAAKEALKEAVILPIKFPQLFTGKRI-PWKGILLFGPPGTGKSY 180
Query: 597 LAKAVATES-QANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPA 655
LAKAVATE+ ++ F ++ +++SKW+GESEK ++ +F ARQ P+IIFIDEID++ A
Sbjct: 181 LAKAVATEANRSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEIDSMCSA 240
Query: 656 RGTAEGEKVTDRIINQLLTEMDGL-VENSGVVVIAATNRPDILDPALLRPGRFDRLILVP 714
R E + V RI + L +M G+ + G++V+ ATN P +LD A+ R RF++ I +P
Sbjct: 241 RSDNENDSVR-RIKTEFLVQMQGVGNDTDGILVLGATNIPWVLDSAIRR--RFEKRIYIP 297
Query: 715 APDEKARFEIFKVHTRGMP-LADDVDLKELARRTEGYTGADIAAVCREAAMNALRRA--- 770
P+ AR +FK+H + + DLKELA +TEGY+GADI+ V R+A M +R+
Sbjct: 298 LPEAHARLVMFKIHLGNTTHVLTEQDLKELAGKTEGYSGADISIVVRDALMEPVRKVQTA 357
Query: 771 -----VAKLSPEELEE------------------------ESEKFLKSLIVTRKDFEVAL 801
V+ SP EE S+K + VT +D +L
Sbjct: 358 THFKRVSGPSPTNHEEIVNDLLVPCSPGDQGAVEMNWMDVPSDKLFEP-PVTMRDMLKSL 416
Query: 802 KKVKPSVTKYMMEYYRQFEE 821
+ KP+V + ++ R+F E
Sbjct: 417 SRTKPTVNEDDLKKLRKFTE 436
Score = 145 bits (361), Expect = 3e-33
Identities = 78/188 (41%), Positives = 123/188 (64%), Gaps = 5/188 (2%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAV 266
P+V + D+ GL A E ++E V LP+K P+LF I P KG+LL+GPPGTGK+ LAKAV
Sbjct: 127 PKVQWSDVAGLDAAKEALKEAVILPIKFPQLFTGKRI-PWKGILLFGPPGTGKSYLAKAV 185
Query: 267 ANEAN-AYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVV 325
A EAN + F +++ ++MSK+ GESE+ ++ +F+ A ++ P+IIFIDEID++ R +
Sbjct: 186 ATEANRSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEIDSMCSARSDNE 245
Query: 326 GEVEKRVVSQLLTLMDGL-KSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQG 384
+ +R+ ++ L M G+ ++V+ ATN P LD A+RR RF++ I + +P+
Sbjct: 246 NDSVRRIKTEFLVQMQGVGNDTDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHA 303
Query: 385 RKEILQIH 392
R + +IH
Sbjct: 304 RLVMFKIH 311
>emb|CAC12300.1| (AL445066) VAT-2 protein [Thermoplasma acidophilum]
Length = 375
Score = 203 bits (512), Expect = 5e-51
Identities = 112/282 (39%), Positives = 166/282 (58%), Gaps = 16/282 (5%)
Query: 540 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAK 599
E+P V ++D+ GL+DVK E+ + +P+K+ + + I G+LLYGPPGTGKT + K
Sbjct: 105 EIPKVTFEDVAGLDDVKNEILGKIVYPMKFKELSQEYNIQFGGGMLLYGPPGTGKTFIVK 164
Query: 600 AVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTA 659
A+A E +A FI + + S+W G EK I ++FR A SP+IIF DEIDA+ P R T+
Sbjct: 165 AIANEVRARFINVNPASLYSQWFGMFEKNISKLFRAAALLSPSIIFFDEIDALVPKRDTS 224
Query: 660 EGEKVTDRIINQLLTEMDGL--VENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 717
+ R + QLL E+ G+ +N + +IAATN P +D A+LRPGRFD I VP PD
Sbjct: 225 NSD-AAKRGVAQLLNEVGGINSQKNKNLFIIAATNNPWEIDEAMLRPGRFDIKIYVPPPD 283
Query: 718 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPE 777
AR +IF+++ + A ++D LA++TEGY+GADI +C++A+ N AV
Sbjct: 284 IIARKKIFELNMAKVKQAGNIDYNLLAQQTEGYSGADIEFICKKASQNVFMEAV------ 337
Query: 778 ELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQF 819
K K V +D + +KPS+ ++ YR+F
Sbjct: 338 -------KSGKQRQVETRDLLDVIGSIKPSIDADLLSKYREF 372
Score = 164 bits (410), Expect = 5e-39
Identities = 100/300 (33%), Positives = 163/300 (54%), Gaps = 18/300 (6%)
Query: 190 TEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGV 249
+E E L + + + + +IP+VT+ED+ GL + +I + P+K EL + I+ G+
Sbjct: 90 SEGEALLEEIGLEKPEIPKVTFEDVAGLDDVKNEILGKIVYPMKFKELSQEYNIQFGGGM 149
Query: 250 LLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAII 309
LLYGPPGTGKT + KA+ANE A FI +N + S+++G E+ + ++F+ A +P+II
Sbjct: 150 LLYGPPGTGKTFIVKAIANEVRARFINVNPASLYSQWFGMFEKNISKLFRAAALLSPSII 209
Query: 310 FIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSR--GKVIVIAATNRPDALDPALRR 367
F DEIDA+ PKR+ + KR V+QLL + G+ S+ + +IAATN P +D A+ R
Sbjct: 210 FFDEIDALVPKRDTSNSDAAKRGVAQLLNEVGGINSQKNKNLFIIAATNNPWEIDEAMLR 269
Query: 368 PGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKK 427
PGRFD +I V PD RK+I +++ + + + + + + D
Sbjct: 270 PGRFDIKIYVPPPDIIARKKIFELNMAKVKQAGNIDYNLLAQQTEGYSGAD--------- 320
Query: 428 IIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAA 487
IE + K S+ + ++ + +E R LLD + + + ADL + RE A
Sbjct: 321 -IEFICKKASQNVFMEAVKSGKQRQVETR-----DLLDVIGSIKPS-IDADLLSKYREFA 373
>pir||T02610 YTA11 protein homolog T19L18.5 - Arabidopsis thaliana
>gi|3413700|gb|AAC31223.1| (AC004747) putative
ATP-dependent zinc protease [Arabidopsis thaliana]
Length = 627
Score = 201 bits (507), Expect = 2e-50
Identities = 106/242 (43%), Positives = 156/242 (63%), Gaps = 2/242 (0%)
Query: 546 WDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATES 605
+ D+ G+++ K EL E V + L+ PK F RLG PKGVLL GPPGTGKT+LA+A+A E+
Sbjct: 136 FSDVKGVDEAKAELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA 194
Query: 606 QANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVT 665
F + G E +VG +R+R++F A++ SP IIFIDEIDAI +R + ++
Sbjct: 195 GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKCSPCIIFIDEIDAIGGSRNPKD-QQYM 253
Query: 666 DRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIF 725
+NQ+L E+DG +N G++V+AATN P+ LD AL+RPGRFDR I+VP PD + R +I
Sbjct: 254 KMTLNQMLVELDGFKQNEGIIVVAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIL 313
Query: 726 KVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEK 785
+ H + A+DVDL +AR T G++GAD+A + AA+ A ++ +LE ++
Sbjct: 314 ESHMSKVLKAEDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGSKDVTMSDLEFAKDR 373
Query: 786 FL 787
+
Sbjct: 374 IM 375
Score = 167 bits (419), Expect = 4e-40
Identities = 149/570 (26%), Positives = 254/570 (44%), Gaps = 48/570 (8%)
Query: 127 LGRPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQI 186
+G+P G + AS + T F E + VGF + + +GI +
Sbjct: 60 VGKPTKDGVLGTASAPIHTISTERTHFKEQLWSTIRTIGVGFLLISGIGALIEDRGIGK- 118
Query: 187 TYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPP 246
L EV+ + D+ G+ EA ++ E+V L+ P+ F RLG + P
Sbjct: 119 -------GLGLHEEVQPSMDSSTKFSDVKGVDEAKAELEEIVHY-LRDPKRFTRLGGKLP 170
Query: 247 KGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAP 306
KGVLL GPPGTGKT+LA+A+A EA F + +G E + G R+R++F A++ +P
Sbjct: 171 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKCSP 230
Query: 307 AIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALR 366
IIFIDEIDAI R + K ++Q+L +DG K +IV+AATN P++LD AL
Sbjct: 231 CIIFIDEIDAIGGSRNPKDQQYMKMTLNQMLVELDGFKQNEGIIVVAATNFPESLDKALV 290
Query: 367 RPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIK 426
RPGRFDR I V PD +GR++IL+ H + D + + + D + +
Sbjct: 291 RPGRFDRHIVVPNPDVEGRRQILESHMSKVLKAEDVDLMIIARGTPGFSGADLANLVNVA 350
Query: 427 KIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGAD-LAALARE 485
+ + +K +DR + R + + DE ++T G L A+ E
Sbjct: 351 ALKAAMDGSKDVTMSDLEFAKDRIMMGSERKSAV--ISDESRKLTAFHEGGHALVAIHTE 408
Query: 486 AAMVVLR-RLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPNV 544
A+ V + ++ G +P + +E +++ L + + E L
Sbjct: 409 GALPVHKATIVPRGMALGMVSQLPDK--DETSISRKQMLARLDVCMGGRVAEEL------ 460
Query: 545 HWDDIGGLEDVKQELREAVEWPLKYPKAF-KRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
I G +V +E K +A + G++ G++ + GK++ +T
Sbjct: 461 ----IFGESEVTSGASSDLEQATKLARAMVTKFGMSKEVGLVAHNYDDNGKSM-----ST 511
Query: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEK 663
E++ E ++++ KA + I+ + + A A + E
Sbjct: 512 ETRLLI----------------ESEVKQLLEKAYNNAKTILTVYNKELHALANALLQHET 555
Query: 664 VTDRIINQLLTEMDG-LVENSGVVVIAATN 692
++ + I +LLT+++ L++ VV +N
Sbjct: 556 LSGKQIKELLTDLNSPLLQKRQEVVTKQSN 585
>gb|AAC73040.1| (AC005824) putative AAA-type ATPase [Arabidopsis thaliana]
Length = 435
Score = 201 bits (507), Expect = 2e-50
Identities = 116/313 (37%), Positives = 184/313 (58%), Gaps = 33/313 (10%)
Query: 537 VLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAF--KRLGITPPKGVLLYGPPGTGK 594
++ E PN+ W D+ GLE KQ L+EAV P+K+P+ F KR P + LLYGPPGTGK
Sbjct: 122 IVREKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFTGKR---RPWRAFLLYGPPGTGK 178
Query: 595 TLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAP 654
+ LAKAVATE+ + F ++ +++SKW+GESEK + +F AR+++P+IIF+DEID++
Sbjct: 179 SYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCG 238
Query: 655 ARGTAEGEKVTDRIINQLLTEMDGLVEN-SGVVVIAATNRPDILDPALLRPGRFDRLILV 713
RG + + RI +LL +M G+ N V+V+AATN P LD A+ R RFD+ I +
Sbjct: 239 TRGEGNESEASRRIKTELLVQMQGVGHNDEKVLVLAATNTPYALDQAIRR--RFDKRIYI 296
Query: 714 PAPDEKARFEIFKVHTRGMP-LADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVA 772
P P+ KAR +FKVH P + D + L ++TEG++G+D++ ++ +R+
Sbjct: 297 PLPEAKARQHMFKVHLGDTPHNLTEPDFEYLGQKTEGFSGSDVSVCVKDVLFEPVRKTQD 356
Query: 773 KL----SPE----------------ELEEESEKFLKSLI----VTRKDFEVALKKVKPSV 808
+ SP+ +++ + K L I +TR DFE L + +P+V
Sbjct: 357 AMFFFKSPDGTWMPCGPRHPGAIQTTMQDLATKGLAEKIIPPPITRTDFEKVLARQRPTV 416
Query: 809 TKYMMEYYRQFEE 821
+K ++ + +F +
Sbjct: 417 SKSDLDVHERFTQ 429
Score = 157 bits (392), Expect = 6e-37
Identities = 88/208 (42%), Positives = 136/208 (65%), Gaps = 10/208 (4%)
Query: 201 VREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKT 260
VRE+ P + + D+ GL+ A + ++E V LP+K P+ F P + LLYGPPGTGK+
Sbjct: 123 VREK--PNIKWSDVAGLESAKQALQEAVILPVKFPQFFTGKR-RPWRAFLLYGPPGTGKS 179
Query: 261 LLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPK 320
LAKAVA EA++ F +++ +++SK+ GESE+ + +F+ A E+AP+IIF+DEID++
Sbjct: 180 YLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGT 239
Query: 321 R-EEVVGEVEKRVVSQLLTLMDGL-KSRGKVIVIAATNRPDALDPALRRPGRFDREIEVG 378
R E E +R+ ++LL M G+ + KV+V+AATN P ALD A+RR RFD+ I +
Sbjct: 240 RGEGNESEASRRIKTELLVQMQGVGHNDEKVLVLAATNTPYALDQAIRR--RFDKRIYIP 297
Query: 379 VPDKQGRKEILQIHTRGMP---IEPDFE 403
+P+ + R+ + ++H P EPDFE
Sbjct: 298 LPEAKARQHMFKVHLGDTPHNLTEPDFE 325
>gb|AAG19908.1| (AE005074) cell division cycle protein; Cdc48e [Halobacterium sp.
NRC-1]
Length = 394
Score = 201 bits (507), Expect = 2e-50
Identities = 106/238 (44%), Positives = 154/238 (64%), Gaps = 6/238 (2%)
Query: 546 WDDIGGLEDVKQELREAVEWPL----KYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAV 601
+DD+GGL D +E+++ VE PL K F + G+ P G+L +GPPGTGKTLLAKAV
Sbjct: 150 YDDVGGLTDTIEEVKDVVEIPLRESDKETNRFNKHGVEPDTGILFHGPPGTGKTLLAKAV 209
Query: 602 ATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEG 661
A E+ ++ + GPE++SKW GE+E IREIF A++ AIIFIDE+D+IAP RG +
Sbjct: 210 AKETGSSIYLVNGPEIISKWYGETEDIIREIFSNAKKKKRAIIFIDEVDSIAPDRG--DT 267
Query: 662 EKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 721
++ +I+ QLLTE+DG + VVVI ATN + +D A++RPGRFDR I P + R
Sbjct: 268 KQFQRKIVAQLLTELDGFEPLNDVVVIGATNALNEVDSAIIRPGRFDRKIKFSKPTQTER 327
Query: 722 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEEL 779
EI + T+ + + VDL+ A T+G+TGAD++ V A ++RR ++ ++L
Sbjct: 328 MEIIEKITKDVDFGESVDLQLFAESTDGWTGADLSGVISRAVTISIRREGDLVTQDDL 385
Score = 185 bits (464), Expect = 2e-45
Identities = 102/232 (43%), Positives = 150/232 (63%), Gaps = 21/232 (9%)
Query: 182 GIVQITYNTEVEVLPQAVEVR-------------EEKIPEVT--YEDIGGLKEAIEKIRE 226
G V T + EV + P+ +E R E+I EV Y+D+GGL + IE++++
Sbjct: 107 GKVTATISDEV-IAPKGIEDRFGEQNRSKAYLKDPEEISEVDSGYDDVGGLTDTIEEVKD 165
Query: 227 MVELPL----KHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEI 282
+VE+PL K F + G+EP G+L +GPPGTGKTLLAKAVA E + +NGPEI
Sbjct: 166 VVEIPLRESDKETNRFNKHGVEPDTGILFHGPPGTGKTLLAKAVAKETGSSIYLVNGPEI 225
Query: 283 MSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDG 342
+SK+YGE+E+ +REIF A++ AIIFIDE+D+IAP R + + ++++V+QLLT +DG
Sbjct: 226 ISKWYGETEDIIREIFSNAKKKKRAIIFIDEVDSIAPDRGD-TKQFQRKIVAQLLTELDG 284
Query: 343 LKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTR 394
+ V+VI ATN + +D A+ RPGRFDR+I+ P + R EI++ T+
Sbjct: 285 FEPLNDVVVIGATNALNEVDSAIIRPGRFDRKIKFSKPTQTERMEIIEKITK 336
>gi|6325281 Mitochondrial member of the CDC48/PAS1/SEC18 family of ATPases;
Yme1p [Saccharomyces cerevisiae]
>gi|418575|sp|P32795|YME1_YEAST YME1 PROTEIN
(TAT-BINDING HOMOLOG 11) (OSD1 PROTEIN)
>gi|2133216|pir||S46608 YTA11 protein - yeast
(Saccharomyces cerevisiae) >gi|295582|gb|AAA02883.1|
(L14616) putative ATPase [Saccharomyces cerevisiae]
>gi|809589|emb|CAA89278.1| (Z49274) Yme1p [Saccharomyces
cerevisiae] >gi|1314098|emb|CAA95020.1| (Z71255) Yme1p
[Saccharomyces cerevisiae]
Length = 747
Score = 200 bits (504), Expect = 4e-50
Identities = 110/264 (41%), Positives = 164/264 (61%), Gaps = 7/264 (2%)
Query: 535 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGK 594
+ V + NV +DD+ G ++ + EL E V++ LK P ++ LG PKGVLL GPPGTGK
Sbjct: 269 KSVDVAKTNVKFDDVCGCDEARAELEEIVDF-LKDPTKYESLGGKLPKGVLLTGPPGTGK 327
Query: 595 TLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAP 654
TLLA+A A E+ +F + G E +VG KRIR++F +AR +PAIIFIDE+DAI
Sbjct: 328 TLLARATAGEAGVDFFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGG 387
Query: 655 ARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVP 714
R + + + +NQLL E+DG + SG+++I ATN P+ LD AL RPGRFD+++ V
Sbjct: 388 KRNPKD-QAYAKQTLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVD 446
Query: 715 APDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKL 774
PD + R +I K H + + LAD+VD +AR T G +GA++A + +AA+ A ++ +
Sbjct: 447 LPDVRGRADILKHHMKKITLADNVDPTIIARGTPGLSGAELANLVNQAAVYACQKNAVSV 506
Query: 775 SPEELEEESEKFL-----KSLIVT 793
E +K L K++++T
Sbjct: 507 DMSHFEWAKDKILMGAERKTMVLT 530
Score = 173 bits (435), Expect = 5e-42
Identities = 111/312 (35%), Positives = 167/312 (52%), Gaps = 26/312 (8%)
Query: 120 DIVKNNLL---GRPVVKGDIIVASGRSEMYYSS-GTPFDEIFRGFFEAMSVGFGELKFMV 175
D V+ NLL V + +S Y+ + + + ++ E + V E F V
Sbjct: 170 DAVRQNLLTASSAGAVNPSLASSSSNQSGYHGNFPSMYSPLYGSRKEPLHVVVSESTFTV 229
Query: 176 VN--------------TIPKGIVQITYNTEV----EVLPQAVEVREEKIPEVTYEDIGGL 217
V+ + +G IT NT + EV ++V+V + V ++D+ G
Sbjct: 230 VSRWVKWLLVFGILTYSFSEGFKYITENTTLLKSSEVADKSVDVAKTN---VKFDDVCGC 286
Query: 218 KEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAI 277
EA ++ E+V+ LK P +E LG + PKGVLL GPPGTGKTLLA+A A EA F +
Sbjct: 287 DEARAELEEIVDF-LKDPTKYESLGGKLPKGVLLTGPPGTGKTLLARATAGEAGVDFFFM 345
Query: 278 NGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLL 337
+G E Y G +R+R++F +A APAIIFIDE+DAI KR K+ ++QLL
Sbjct: 346 SGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGGKRNPKDQAYAKQTLNQLL 405
Query: 338 TLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMP 397
+DG +I+I ATN P+ALD AL RPGRFD+ + V +PD +GR +IL+ H + +
Sbjct: 406 VELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKHHMKKIT 465
Query: 398 IEPDFEKETVIK 409
+ + + + +
Sbjct: 466 LADNVDPTIIAR 477
>emb|CAA56954.1| (X81067) probable mitochondrial protein; nearly identical to YME1
[Saccharomyces cerevisiae]
Length = 747
Score = 200 bits (504), Expect = 4e-50
Identities = 110/264 (41%), Positives = 164/264 (61%), Gaps = 7/264 (2%)
Query: 535 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGK 594
+ V + NV +DD+ G ++ + EL E V++ LK P ++ LG PKGVLL GPPGTGK
Sbjct: 269 KSVDVAKTNVKFDDVCGCDEARAELEEIVDF-LKDPTKYESLGGKLPKGVLLTGPPGTGK 327
Query: 595 TLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAP 654
TLLA+A A E+ +F + G E +VG KRIR++F +AR +PAIIFIDE+DAI
Sbjct: 328 TLLARATAGEAGVDFFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGG 387
Query: 655 ARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVP 714
R + + + +NQLL E+DG + SG+++I ATN P+ LD AL RPGRFD+++ V
Sbjct: 388 KRNPKD-QAYAKQTLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVD 446
Query: 715 APDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKL 774
PD + R +I K H + + LAD+VD +AR T G +GA++A + +AA+ A ++ +
Sbjct: 447 LPDVRGRADILKHHMKKITLADNVDPTIIARGTPGLSGAELANLVNQAAVYACQKNAVSV 506
Query: 775 SPEELEEESEKFL-----KSLIVT 793
E +K L K++++T
Sbjct: 507 DMSHFEWAKDKILMGAERKTMVLT 530
Score = 173 bits (435), Expect = 5e-42
Identities = 111/312 (35%), Positives = 167/312 (52%), Gaps = 26/312 (8%)
Query: 120 DIVKNNLL---GRPVVKGDIIVASGRSEMYYSS-GTPFDEIFRGFFEAMSVGFGELKFMV 175
D V+ NLL V + +S Y+ + + + ++ E + V E F V
Sbjct: 170 DAVRQNLLTASSAGAVNPSLASSSSNQSGYHGNFPSMYSPLYGSRKEPLHVVVSESTFTV 229
Query: 176 VN--------------TIPKGIVQITYNTEV----EVLPQAVEVREEKIPEVTYEDIGGL 217
V+ + +G IT NT + EV ++V+V + V ++D+ G
Sbjct: 230 VSRWVKWLLVFGILTYSFSEGFKYITENTTLLKSSEVADKSVDVAKTN---VKFDDVCGC 286
Query: 218 KEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAI 277
EA ++ E+V+ LK P +E LG + PKGVLL GPPGTGKTLLA+A A EA F +
Sbjct: 287 DEARAELEEIVDF-LKDPTKYESLGGKLPKGVLLTGPPGTGKTLLARATAGEAGVDFFFM 345
Query: 278 NGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLL 337
+G E Y G +R+R++F +A APAIIFIDE+DAI KR K+ ++QLL
Sbjct: 346 SGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGGKRNPKDQAYAKQTLNQLL 405
Query: 338 TLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMP 397
+DG +I+I ATN P+ALD AL RPGRFD+ + V +PD +GR +IL+ H + +
Sbjct: 406 VELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKHHMKKIT 465
Query: 398 IEPDFEKETVIK 409
+ + + + +
Sbjct: 466 LADNVDPTIIAR 477
>dbj|BAA03839.1| (D16332) OSD1 gene product [Saccharomyces cerevisiae]
Length = 747
Score = 200 bits (504), Expect = 4e-50
Identities = 110/264 (41%), Positives = 164/264 (61%), Gaps = 7/264 (2%)
Query: 535 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGK 594
+ V + NV +DD+ G ++ + EL E V++ LK P ++ LG PKGVLL GPPGTGK
Sbjct: 269 KSVDVAKTNVKFDDVCGCDEARAELEEIVDF-LKDPTKYESLGGKLPKGVLLTGPPGTGK 327
Query: 595 TLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAP 654
TLLA+A A E+ +F + G E +VG KRIR++F +AR +PAIIFIDE+DAI
Sbjct: 328 TLLARATAGEAGVDFFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGG 387
Query: 655 ARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVP 714
R + + + +NQLL E+DG + SG+++I ATN P+ LD AL RPGRFD+++ V
Sbjct: 388 KRNPKD-QAYAKQTLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVD 446
Query: 715 APDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKL 774
PD + R +I K H + + LAD+VD +AR T G +GA++A + +AA+ A ++ +
Sbjct: 447 LPDVRGRADILKHHMKKITLADNVDPTIIARGTPGLSGAELANLVNQAAVYACQKNAVSV 506
Query: 775 SPEELEEESEKFL-----KSLIVT 793
E +K L K++++T
Sbjct: 507 DMSHFEWAKDKILMGAERKTMVLT 530
Score = 173 bits (435), Expect = 5e-42
Identities = 111/312 (35%), Positives = 167/312 (52%), Gaps = 26/312 (8%)
Query: 120 DIVKNNLL---GRPVVKGDIIVASGRSEMYYSS-GTPFDEIFRGFFEAMSVGFGELKFMV 175
D V+ NLL V + +S Y+ + + + ++ E + V E F V
Sbjct: 170 DAVRQNLLTASSAGAVNPSLASSSSNQSGYHGNFPSMYSPLYGSRKEPLHVVVSESTFTV 229
Query: 176 VN--------------TIPKGIVQITYNTEV----EVLPQAVEVREEKIPEVTYEDIGGL 217
V+ + +G IT NT + EV ++V+V + V ++D+ G
Sbjct: 230 VSRWVKWLLVFGILTYSFSEGFKYITENTTLLKSSEVADKSVDVAKTN---VKFDDVCGC 286
Query: 218 KEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAI 277
EA ++ E+V+ LK P +E LG + PKGVLL GPPGTGKTLLA+A A EA F +
Sbjct: 287 DEARAELEEIVDF-LKDPTKYESLGGKLPKGVLLTGPPGTGKTLLARATAGEAGVDFFFM 345
Query: 278 NGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEKRVVSQLL 337
+G E Y G +R+R++F +A APAIIFIDE+DAI KR K+ ++QLL
Sbjct: 346 SGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGGKRNPKDQAYAKQTLNQLL 405
Query: 338 TLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMP 397
+DG +I+I ATN P+ALD AL RPGRFD+ + V +PD +GR +IL+ H + +
Sbjct: 406 VELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKHHMKKIT 465
Query: 398 IEPDFEKETVIK 409
+ + + + +
Sbjct: 466 LADNVDPTIIAR 477
>gi|11230794 fidgetin-like 1 [Mus musculus]
>gi|10442029|gb|AAG17290.1|AF263914_1 (AF263914)
fidgetin-like 1 [Mus musculus]
Length = 683
Score = 199 bits (502), Expect = 8e-50
Identities = 115/310 (37%), Positives = 178/310 (57%), Gaps = 25/310 (8%)
Query: 524 EALKMVEPSALREVLIEV----PNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGIT 579
+ LK VEP + V+ E+ P VHWDDI G+E K ++E V WP+ P F L
Sbjct: 383 DCLKNVEPRMVELVMNEIMDHGPPVHWDDIAGVEFAKATIKEIVVWPMMRPDIFTGLR-G 441
Query: 580 PPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQA 639
PPKG+LL+GPPGTGKTL+ K +A++S A F +I + SKWVGE EK +R +F AR
Sbjct: 442 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQ 501
Query: 640 SPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENS--GVVVIAATNRPDIL 697
PA+IFIDEID++ RG E E + RI + L ++DG +S ++V+ ATNRP +
Sbjct: 502 QPAVIFIDEIDSLLSQRGDGEHES-SRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEI 560
Query: 698 DPALLRPGRFDRLILVPAPDEKARFEIF-KVHTRGMPLADDVDLKELARRTEGYTGADIA 756
D A R R + + +P P+ AR +I + ++ D + + ++++G++GAD+
Sbjct: 561 DEAARR--RLVKRLYIPLPEASARKQIVGNLMSKEQCCLSDEETDLVVQQSDGFSGADMT 618
Query: 757 AVCREAAMNALRRA----VAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYM 812
+CREA++ +R +A +SP+++ + DFE A K V+P+V+
Sbjct: 619 QLCREASLGPIRSLHAADIATISPDQVRP----------IAYIDFENAFKTVRPTVSPKD 668
Query: 813 MEYYRQFEES 822
+E Y + E+
Sbjct: 669 LELYENWNET 678
Score = 142 bits (354), Expect = 2e-32
Identities = 77/202 (38%), Positives = 125/202 (61%), Gaps = 9/202 (4%)
Query: 194 VLPQAVEVREEKI----PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGV 249
V P+ VE+ +I P V ++DI G++ A I+E+V P+ P++F L PPKG+
Sbjct: 388 VEPRMVELVMNEIMDHGPPVHWDDIAGVEFAKATIKEIVVWPMMRPDIFTGLR-GPPKGI 446
Query: 250 LLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAII 309
LL+GPPGTGKTL+ K +A+++ A F +I+ + SK+ GE E+ +R +F A PA+I
Sbjct: 447 LLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVI 506
Query: 310 FIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDG--LKSRGKVIVIAATNRPDALDPALRR 367
FIDEID++ +R + E +R+ ++ L +DG S +++V+ ATNRP +D A RR
Sbjct: 507 FIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR 566
Query: 368 PGRFDREIEVGVPDKQGRKEIL 389
R + + + +P+ RK+I+
Sbjct: 567 --RLVKRLYIPLPEASARKQIV 586
>dbj|BAB16447.1| (AP002483) putative AAA-type ATPase [Oryza sativa]
Length = 411
Score = 199 bits (500), Expect = 1e-49
Identities = 123/322 (38%), Positives = 187/322 (57%), Gaps = 34/322 (10%)
Query: 534 LREVLIEV-PNVHWDDIGGLEDVKQELREAVEWPLKYPKAF--KRLGITPPKGVLLYGPP 590
LR ++ P+V W D+ GLE K+ L+EA P+K+P F KR +P K LLYGPP
Sbjct: 95 LRSAIVAAKPSVKWSDVAGLESAKEALQEAAILPIKFPHFFTGKR---SPWKAFLLYGPP 151
Query: 591 GTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEID 650
GTGK+ LA+AVATE + F +I +++SKW+GESEK + +F+ AR+ +P+IIFIDEID
Sbjct: 152 GTGKSYLAEAVATEVDSTFFSISSSDLVSKWMGESEKLVANLFQMARENAPSIIFIDEID 211
Query: 651 AIAPARGTAEGEKVTDRIINQLLTEMDGL-VENSGVVVIAATNRPDILDPALLRPGRFDR 709
++ RG + + RI +LL +M G N V+V+AATN P +LD A+ R RFD+
Sbjct: 212 SLCGQRGECNENEASRRIKTELLVQMQGFDNSNDKVLVLAATNMPHVLDQAMRR--RFDK 269
Query: 710 LILVPAPDEKARFEIFKVHTRGMPLA-DDVDLKELARRTEGYTGADIAAVCREAAMNALR 768
I +P PD KAR + FK+H P + + D LA +TEG++G+DIA ++A +R
Sbjct: 270 CIYIPLPDLKARKDTFKIHIGDTPHSLTEGDFVSLAYQTEGFSGSDIAVCVKDALFQPVR 329
Query: 769 RAV-AKL---------SPEE----------LEEESEKFLKSLI----VTRKDFEVALKKV 804
+ AK +P E ++E + K L + I +++ DF+ L +
Sbjct: 330 KTQDAKFFIKADDDTWTPSEQSQPGSIQTTMQELASKGLAAKILLPPISKIDFDEVLVRQ 389
Query: 805 KPSVTKYMMEYYRQFEESRKRM 826
+P+V+K + Y +F + R+
Sbjct: 390 RPTVSKKDLVVYEKFTQEFTRL 411
Score = 155 bits (389), Expect = 1e-36
Identities = 86/193 (44%), Positives = 123/193 (63%), Gaps = 5/193 (2%)
Query: 207 PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAV 266
P V + D+ GL+ A E ++E LP+K P F P K LLYGPPGTGK+ LA+AV
Sbjct: 104 PSVKWSDVAGLESAKEALQEAAILPIKFPHFFTGKR-SPWKAFLLYGPPGTGKSYLAEAV 162
Query: 267 ANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEV-V 325
A E ++ F +I+ +++SK+ GESE+ + +F+ A ENAP+IIFIDEID++ +R E
Sbjct: 163 ATEVDSTFFSISSSDLVSKWMGESEKLVANLFQMARENAPSIIFIDEIDSLCGQRGECNE 222
Query: 326 GEVEKRVVSQLLTLMDGL-KSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQG 384
E +R+ ++LL M G S KV+V+AATN P LD A+RR RFD+ I + +PD +
Sbjct: 223 NEASRRIKTELLVQMQGFDNSNDKVLVLAATNMPHVLDQAMRR--RFDKCIYIPLPDLKA 280
Query: 385 RKEILQIHTRGMP 397
RK+ +IH P
Sbjct: 281 RKDTFKIHIGDTP 293
>gb|AAK41191.1| AAA family ATPase, p60 katanin [Sulfolobus solfataricus]
Length = 372
Score = 197 bits (496), Expect = 4e-49
Identities = 124/298 (41%), Positives = 172/298 (57%), Gaps = 26/298 (8%)
Query: 537 VLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTL 596
V+ E P V + DI GL+DVK+ LREA+ +P K P F + P+G+LLYGPPG GKT+
Sbjct: 93 VITEKPKVSFKDIVGLDDVKEALREAIIYPTKRPDLFP---LGWPRGILLYGPPGCGKTM 149
Query: 597 LAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQAS-----PAIIFIDEIDA 651
+A AVA E + F+ + V+SKW+GE+EK + +F+ AR+ S PAIIFIDE+DA
Sbjct: 150 IAAAVANEIDSIFMQLDAASVMSKWLGEAEKNVANVFKMAREESKKQNKPAIIFIDELDA 209
Query: 652 IAPARGTAEGEKVTDRIINQLLTEMDGLV---ENSGVVVIAATNRPDILDPALLRPGRFD 708
+ T G + R+ NQ L EMDGL+ EN V VI ATN+P LD A LR RF
Sbjct: 210 LLGVYSTEVGGEA--RVRNQFLKEMDGLLDKSENYKVYVIGATNKPWRLDEAFLR--RFQ 265
Query: 709 RLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALR 768
+ I VP PD + R +FK +T + L +V L+ELA+ TEGYT +DI R+ A
Sbjct: 266 KRIYVPLPDYEQRLSLFKYYTSKIKLDTEVSLEELAKLTEGYTASDI----RDIVQAAHI 321
Query: 769 RAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRM 826
+ V ++ L E +T +DF+ LK PSV +++ Y + E K +
Sbjct: 322 KVVKEMFKNNLGEPR-------TITLQDFKDILKVRMPSVNPELIKAYEAWTEKFKAL 372
Score = 152 bits (379), Expect = 2e-35
Identities = 98/267 (36%), Positives = 150/267 (55%), Gaps = 22/267 (8%)
Query: 196 PQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPP 255
P+ V + E+ P+V+++DI GL + E +RE + P K P+LF + P+G+LLYGPP
Sbjct: 89 PEEVVITEK--PKVSFKDIVGLDDVKEALREAIIYPTKRPDLFP---LGWPRGILLYGPP 143
Query: 256 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEE-----NAPAIIF 310
G GKT++A AVANE ++ F+ ++ +MSK+ GE+E+ + +FK A E N PAIIF
Sbjct: 144 GCGKTMIAAAVANEIDSIFMQLDAASVMSKWLGEAEKNVANVFKMAREESKKQNKPAIIF 203
Query: 311 IDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRG---KVIVIAATNRPDALDPALRR 367
IDE+DA+ VG E RV +Q L MDGL + KV VI ATN+P LD A R
Sbjct: 204 IDELDALLGVYSTEVGG-EARVRNQFLKEMDGLLDKSENYKVYVIGATNKPWRLDEAFLR 262
Query: 368 PGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKK 427
RF + I V +PD + R + + +T + ++ + E + K + D I+
Sbjct: 263 --RFQKRIYVPLPDYEQRLSLFKYYTSKIKLDTEVSLEELAKLTEGYTASD------IRD 314
Query: 428 IIEKVSKAKSEEEIKDILREDRNLYIE 454
I++ +E K+ L E R + ++
Sbjct: 315 IVQAAHIKVVKEMFKNNLGEPRTITLQ 341
>gi|11545833 fidgetin-like 1 [Homo sapiens] >gi|10434929|dbj|BAB14426.1|
(AK023142) unnamed protein product [Homo sapiens]
Length = 674
Score = 190 bits (478), Expect = 5e-47
Identities = 107/310 (34%), Positives = 179/310 (57%), Gaps = 25/310 (8%)
Query: 524 EALKMVEPSALREVLIEV----PNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGIT 579
E LK +EP + ++ E+ P V+W+DI G+E K ++E V WP+ P F L
Sbjct: 374 ERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-G 432
Query: 580 PPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQA 639
PPKG+LL+GPPGTGKTL+ K +A++S A F +I + SKWVGE EK +R +F AR
Sbjct: 433 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQ 492
Query: 640 SPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENS--GVVVIAATNRPDIL 697
PA+IFIDEID++ RG E E + RI + L ++DG +S ++V+ ATNRP +
Sbjct: 493 QPAVIFIDEIDSLLSQRGDGEHES-SRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEI 551
Query: 698 DPALLRPGRFDRLILVPAPDEKARFEI-FKVHTRGMPLADDVDLKELARRTEGYTGADIA 756
D A R R + + +P P+ AR +I + ++ + +++++ ++++ ++GAD+
Sbjct: 552 DEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMT 609
Query: 757 AVCREAAMNALRRA----VAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYM 812
+CR A++ +R +A ++P+++ + DFE A + V+PSV+
Sbjct: 610 QLCRGASLGPIRSLQTADIATITPDQVRP----------IAYIDFENAFRTVRPSVSPKD 659
Query: 813 MEYYRQFEES 822
+E Y + ++
Sbjct: 660 LELYENWNKT 669
Score = 143 bits (356), Expect = 1e-32
Identities = 76/200 (38%), Positives = 124/200 (62%), Gaps = 9/200 (4%)
Query: 196 PQAVEVREEKI----PEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLL 251
P+ +E+ +I P V +EDI G++ A I+E+V P+ P++F L PPKG+LL
Sbjct: 381 PKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILL 439
Query: 252 YGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFI 311
+GPPGTGKTL+ K +A+++ A F +I+ + SK+ GE E+ +R +F A PA+IFI
Sbjct: 440 FGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFI 499
Query: 312 DEIDAIAPKREEVVGEVEKRVVSQLLTLMDG--LKSRGKVIVIAATNRPDALDPALRRPG 369
DEID++ +R + E +R+ ++ L +DG S +++V+ ATNRP +D A RR
Sbjct: 500 DEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR-- 557
Query: 370 RFDREIEVGVPDKQGRKEIL 389
R + + + +P+ RK+I+
Sbjct: 558 RLVKRLYIPLPEASARKQIV 577
>gb|AAD31547.1|U53149_5 (U53149) Contains similarity to Pfam domain: PF00004 (AAA),
Score=233.7, E-value=8.6e-67, N=1 [Caenorhabditis
elegans]
Length = 512
Score = 189 bits (475), Expect = 1e-46
Identities = 125/335 (37%), Positives = 184/335 (54%), Gaps = 24/335 (7%)
Query: 501 NPEAETIPREVLEELK-------VTKADFYEALKMVEPSALREVLIEVPNVHWDDIGGLE 553
N + ET+ R +++ V +A + V L + +++ V DD+ G
Sbjct: 186 NRKMETVKRVKVDKASLPMHQNPVNRAALLNGVDKVIGERLLDEVLDNTGVRMDDVAGCH 245
Query: 554 DVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIR 613
K L EAV P P FK L P KG+LL+GPPG GKTLLAKAVA ES+ F I
Sbjct: 246 SAKAALEEAVILPALNPNLFKGLR-QPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNIS 304
Query: 614 GPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLL 673
+ SKWVG+SEK IR +F+ AR A P+IIFIDEID+I R + E V+ R+ + L
Sbjct: 305 ASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCERSEKDAE-VSRRMKTEFL 363
Query: 674 TEMDGLVENSG--VVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG 731
+ DG ++ ++VI ATNRP LD A+LR RF + I++ PDE+AR E+ +
Sbjct: 364 VQFDGATSSADDRILVIGATNRPHELDDAVLR--RFPKRIMLNLPDEEARKELITKTLKK 421
Query: 732 MPLADDV---DLKELARRTEGYTGADIAAVCREAAMNALRRA-VAKLSPEELEEESEKFL 787
+ D + D++ +A T G++ +D+ A+C+EAAM +R +KLS + EK
Sbjct: 422 HNMMDGLISSDIRYIASNTSGFSNSDLVALCKEAAMVPIREIDRSKLS----MTDGEKIR 477
Query: 788 KSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEES 822
K + DF+ AL+ ++PS ++ +M F S
Sbjct: 478 K---IRASDFDTALRTIRPSTSQKIMSKLSDFSRS 509
Score = 156 bits (391), Expect = 8e-37
Identities = 109/332 (32%), Positives = 162/332 (47%), Gaps = 69/332 (20%)
Query: 209 VTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVAN 268
V +D+ G A + E V LP +P LF+ L +P KG+LL+GPPG GKTLLAKAVA
Sbjct: 236 VRMDDVAGCHSAKAALEEAVILPALNPNLFKGLR-QPVKGILLFGPPGNGKTLLAKAVAG 294
Query: 269 EANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEV 328
E+ F I+ + SK+ G+SE+ +R +F+ A P+IIFIDEID+I +R E EV
Sbjct: 295 ESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCERSEKDAEV 354
Query: 329 EKRVVSQLLTLMDGLKSRG--KVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRK 386
+R+ ++ L DG S +++VI ATNRP LD A+ R RF + I + +PD++ RK
Sbjct: 355 SRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLR--RFPKRIMLNLPDEEARK 412
Query: 387 EILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILR 446
E++ K L+K + D
Sbjct: 413 ELI---------------------TKTLKKHNMMD------------------------- 426
Query: 447 EDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAET 506
LI + +A T GF +DL AL +EAAMV +R + + + E
Sbjct: 427 -----------GLISSDIRYIASNTSGFSNSDLVALCKEAAMVPIREIDRSKLSMTDGEK 475
Query: 507 IPREVLEELKVTKADFYEALKMVEPSALREVL 538
I K+ +DF AL+ + PS ++++
Sbjct: 476 I-------RKIRASDFDTALRTIRPSTSQKIM 500
>pir||S37606 SEC18 protein - yeast (Candida albicans)
Length = 794
Score = 187 bits (471), Expect = 3e-46
Identities = 159/513 (30%), Positives = 235/513 (44%), Gaps = 93/513 (18%)
Query: 162 EAMSVGFGELKFMVVN-TIPKGIVQITYNTEVEVLPQAVEVREEKI-PEVTYED--IGGL 217
++ VGF + ++N T PK + Q + P R++ I P+ ED IGGL
Sbjct: 224 KSTDVGFYPYEGSIINLTKPKTLKQRMFGGST---PHRTSRRKQIINPDFKLEDLGIGGL 280
Query: 218 KEAIEKI-REMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIA 276
+ I R + PEL E+L + KG+LLYGPPGTGKTL+A+ ++ N
Sbjct: 281 DAEFQDIFRRAFNSRILPPELAEKLDYKHCKGLLLYGPPGTGKTLIARKLSKMLNGKEPK 340
Query: 277 I-NGPEIMSKYYGESEERLREIFKEAE--------ENAPAIIFIDEIDAIAPKREEVVGE 327
I NGPE++SKY G SEE +R +FK+AE ++ +I DE+D++ +R +
Sbjct: 341 IVNGPEMLSKYVGASEENIRNLFKDAEAEYKLKGEDSDLHVIIFDELDSVFKQRGSGKSD 400
Query: 328 ---VEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQG 384
V VV+QLL+ MDG+ ++VI TNR D +D AL RPGRF+ +IE+ +PD++G
Sbjct: 401 GTGVGDNVVNQLLSKMDGVDQLNNILVIGMTNRLDLIDTALLRPGRFEIQIEISLPDEKG 460
Query: 385 RKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDI 444
RK+I IHT KK+ E I
Sbjct: 461 RKDIFLIHT--------------------------------KKLTE-----------NGI 477
Query: 445 LREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEA 504
L D N DEL+ +T F GA++ L A + R K+G +
Sbjct: 478 LSSDVN-------------FDELSTLTKNFTGAEIEGLCNSAKSYAISRHTKKGAL---- 520
Query: 505 ETIPREVLEELKVTKADFYEALKMVEPS-ALREVLIEVPNVHWDDIGGLEDVKQELREAV 563
I E + ++K+T+ DF AL + P+ E + H G+ Q +R
Sbjct: 521 AQIDPESIAKMKITRDDFLLALNDIRPAFGTDEEDLSQQAQH-----GIIQFNQTIRNIF 575
Query: 564 EWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVG 623
E + + +LLYGPPG GKT +A +A S FI + E L VG
Sbjct: 576 EKGQSIIDVVRSSETEHLRSILLYGPPGVGKTSIATTLALNSDFPFIKMLSAETL---VG 632
Query: 624 ESEKR----IREIFRKARQASPAIIFIDEIDAI 652
E R I +FR ++ ++ ID+I+ I
Sbjct: 633 MGELRKIQEIDNVFRDVHKSPLNVLVIDKIENI 665
Score = 176 bits (442), Expect = 8e-43
Identities = 104/275 (37%), Positives = 165/275 (59%), Gaps = 19/275 (6%)
Query: 549 IGGLEDVKQEL-REAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQA 607
IGGL+ Q++ R A + P+ ++L KG+LLYGPPGTGKTL+A+ ++
Sbjct: 277 IGGLDAEFQDIFRRAFNSRILPPELAEKLDYKHCKGLLLYGPPGTGKTLIARKLSKMLNG 336
Query: 608 NFIAI-RGPEVLSKWVGESEKRIREIFR--------KARQASPAIIFIDEIDAIAPARGT 658
I GPE+LSK+VG SE+ IR +F+ K + +I DE+D++ RG+
Sbjct: 337 KEPKIVNGPEMLSKYVGASEENIRNLFKDAEAEYKLKGEDSDLHVIIFDELDSVFKQRGS 396
Query: 659 --AEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAP 716
++G V D ++NQLL++MDG+ + + ++VI TNR D++D ALLRPGRF+ I + P
Sbjct: 397 GKSDGTGVGDNVVNQLLSKMDGVDQLNNILVIGMTNRLDLIDTALLRPGRFEIQIEISLP 456
Query: 717 DEKARFEIFKVHTRGMP----LADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVA 772
DEK R +IF +HT+ + L+ DV+ EL+ T+ +TGA+I +C A A+ R
Sbjct: 457 DEKGRKDIFLIHTKKLTENGILSSDVNFDELSTLTKNFTGAEIEGLCNSAKSYAISRHTK 516
Query: 773 KLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPS 807
K + +++ ES + + +TR DF +AL ++P+
Sbjct: 517 KGALAQIDPES---IAKMKITRDDFLLALNDIRPA 548
>sp|P34732|SC18_CANAL VESICULAR-FUSION PROTEIN SEC18 >gi|578124|emb|CAA47077.1| (X66467)
SEC18 [Candida albicans]
Length = 794
Score = 187 bits (471), Expect = 3e-46
Identities = 159/513 (30%), Positives = 235/513 (44%), Gaps = 93/513 (18%)
Query: 162 EAMSVGFGELKFMVVN-TIPKGIVQITYNTEVEVLPQAVEVREEKI-PEVTYED--IGGL 217
++ VGF + ++N T PK + Q + P R++ I P+ ED IGGL
Sbjct: 224 KSTDVGFYPYEGSIINLTKPKTLKQRMFGGST---PHRTSRRKQIINPDFKLEDLGIGGL 280
Query: 218 KEAIEKI-REMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIA 276
+ I R + PEL E+L + KG+LLYGPPGTGKTL+A+ ++ N
Sbjct: 281 DAEFQDIFRRAFNSRILPPELAEKLDYKHCKGLLLYGPPGTGKTLIARKLSKMLNGKEPK 340
Query: 277 I-NGPEIMSKYYGESEERLREIFKEAE--------ENAPAIIFIDEIDAIAPKREEVVGE 327
I NGPE++SKY G SEE +R +FK+AE ++ +I DE+D++ +R +
Sbjct: 341 IVNGPEMLSKYVGASEENIRNLFKDAEAEYKLKGEDSDLHVIIFDELDSVFKQRGSGKSD 400
Query: 328 ---VEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQG 384
V VV+QLL+ MDG+ ++VI TNR D +D AL RPGRF+ +IE+ +PD++G
Sbjct: 401 GTGVGDNVVNQLLSKMDGVDQLNNILVIGMTNRLDLIDTALLRPGRFEIQIEISLPDEKG 460
Query: 385 RKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDI 444
RK+I IHT KK+ E I
Sbjct: 461 RKDIFLIHT--------------------------------KKLTE-----------NGI 477
Query: 445 LREDRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEA 504
L D N DEL+ +T F GA++ L A + R K+G +
Sbjct: 478 LSSDVN-------------FDELSTLTKNFTGAEIEGLCNSAKSYAISRHTKKGAL---- 520
Query: 505 ETIPREVLEELKVTKADFYEALKMVEPS-ALREVLIEVPNVHWDDIGGLEDVKQELREAV 563
I E + ++K+T+ DF AL + P+ E + H G+ Q +R
Sbjct: 521 AQIDPESIAKMKITRDDFLLALNDIRPAFGTDEEDLSQQAQH-----GIIQFNQTIRNIF 575
Query: 564 EWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVG 623
E + + +LLYGPPG GKT +A +A S FI + E L VG
Sbjct: 576 EKGQSIIDVVRSSETEHLRSILLYGPPGVGKTSIATTLALNSDFPFIKMLSAETL---VG 632
Query: 624 ESEKR----IREIFRKARQASPAIIFIDEIDAI 652
E R I +FR ++ ++ ID+I+ I
Sbjct: 633 MGELRKIQEIDNVFRDVHKSPLNVLVIDKIENI 665
Score = 176 bits (442), Expect = 8e-43
Identities = 104/275 (37%), Positives = 165/275 (59%), Gaps = 19/275 (6%)
Query: 549 IGGLEDVKQEL-REAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQA 607
IGGL+ Q++ R A + P+ ++L KG+LLYGPPGTGKTL+A+ ++
Sbjct: 277 IGGLDAEFQDIFRRAFNSRILPPELAEKLDYKHCKGLLLYGPPGTGKTLIARKLSKMLNG 336
Query: 608 NFIAI-RGPEVLSKWVGESEKRIREIFR--------KARQASPAIIFIDEIDAIAPARGT 658
I GPE+LSK+VG SE+ IR +F+ K + +I DE+D++ RG+
Sbjct: 337 KEPKIVNGPEMLSKYVGASEENIRNLFKDAEAEYKLKGEDSDLHVIIFDELDSVFKQRGS 396
Query: 659 --AEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAP 716
++G V D ++NQLL++MDG+ + + ++VI TNR D++D ALLRPGRF+ I + P
Sbjct: 397 GKSDGTGVGDNVVNQLLSKMDGVDQLNNILVIGMTNRLDLIDTALLRPGRFEIQIEISLP 456
Query: 717 DEKARFEIFKVHTRGMP----LADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVA 772
DEK R +IF +HT+ + L+ DV+ EL+ T+ +TGA+I +C A A+ R
Sbjct: 457 DEKGRKDIFLIHTKKLTENGILSSDVNFDELSTLTKNFTGAEIEGLCNSAKSYAISRHTK 516
Query: 773 KLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPS 807
K + +++ ES + + +TR DF +AL ++P+
Sbjct: 517 KGALAQIDPES---IAKMKITRDDFLLALNDIRPA 548
>gi|6325183 Yta6p [Saccharomyces cerevisiae] >gi|2133218|pir||S61113 YTA6
protein - yeast (Saccharomyces cerevisiae)
>gi|1147619|gb|AAB68264.1| (U41849) Yta6p [Saccharomyces
cerevisiae]
Length = 754
Score = 186 bits (467), Expect = 1e-45
Identities = 116/318 (36%), Positives = 182/318 (56%), Gaps = 28/318 (8%)
Query: 519 KADFYEALKMVEPSA----LREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFK 574
K D ++++ V+ +A L E+L+ V+W+DI GL + K L+EAV +P P FK
Sbjct: 439 KEDILKSVQGVDRNACEQILNEILVTDEKVYWEDIAGLRNAKNSLKEAVVYPFLRPDLFK 498
Query: 575 RLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFR 634
L P +G+LL+GPPGTGKT++AKAVATES + F ++ +LSK++GESEK +R +F
Sbjct: 499 GLR-EPVRGMLLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESEKLVRALFY 557
Query: 635 KARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVE------------N 682
A++ SP+IIFIDEID++ AR E E + RI +LL + L +
Sbjct: 558 MAKKLSPSIIFIDEIDSMLTARSDNENES-SRRIKTELLIQWSSLSSATAQSEDRNNTLD 616
Query: 683 SGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR-FEIFKVHTRGMPLADDVDLK 741
S V+V+ ATN P +D A R RF R + +P PD + R + + ++ + D+D +
Sbjct: 617 SRVLVLGATNLPWAIDDAARR--RFSRKLYIPLPDYETRLYHLKRLMAKQKNSLQDLDYE 674
Query: 742 ELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVAL 801
+ TEG++G+D+ ++ +EAAM +R KL + F K + KDF+ AL
Sbjct: 675 LITEMTEGFSGSDLTSLAKEAAMEPIRDLGDKLMFAD-------FDKIRGIEIKDFQNAL 727
Query: 802 KKVKPSVTKYMMEYYRQF 819
+K SV+ ++ Y ++
Sbjct: 728 LTIKKSVSSESLQKYEEW 745
Score = 148 bits (370), Expect = 2e-34
Identities = 120/377 (31%), Positives = 181/377 (47%), Gaps = 88/377 (23%)
Query: 130 PVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQITYN 189
PV+ V + M SGTP E + S K I K + + N
Sbjct: 403 PVLVSATAVPAESKPMRSKSGTPDKE------SSASSSLDSRK----EDILKSVQGVDRN 452
Query: 190 TEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGV 249
++L + + V +EK V +EDI GL+ A ++E V P P+LF+ L EP +G+
Sbjct: 453 ACEQILNEIL-VTDEK---VYWEDIAGLRNAKNSLKEAVVYPFLRPDLFKGLR-EPVRGM 507
Query: 250 LLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAII 309
LL+GPPGTGKT++AKAVA E+N+ F +++ ++SKY GESE+ +R +F A++ +P+II
Sbjct: 508 LLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESEKLVRALFYMAKKLSPSII 567
Query: 310 FIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSR------------GKVIVIAATNR 357
FIDEID++ R + E +R+ ++LL L S +V+V+ ATN
Sbjct: 568 FIDEIDSMLTARSDNENESSRRIKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNL 627
Query: 358 PDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKD 417
P A+D A RR RF R++ + +PD ET + LK L
Sbjct: 628 PWAIDDAARR--RFSRKLYIPLPD----------------------YETRLYHLKRL--- 660
Query: 418 DRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGA 477
AK + ++D+ D L + E+T GF G+
Sbjct: 661 ----------------MAKQKNSLQDL---DYEL---------------ITEMTEGFSGS 686
Query: 478 DLAALAREAAMVVLRRL 494
DL +LA+EAAM +R L
Sbjct: 687 DLTSLAKEAAMEPIRDL 703
>gb|AAF51127.1| (AE003580) CG3326 gene product [Drosophila melanogaster]
Length = 477
Score = 185 bits (466), Expect = 1e-45
Identities = 116/278 (41%), Positives = 165/278 (58%), Gaps = 16/278 (5%)
Query: 546 WDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATES 605
W+DI GLE K EA+ PL+ P F + PP+GVLL+GPPGTGKTL+AK++A+++
Sbjct: 203 WEDIAGLESAKSTFLEAIIMPLRRPDLFTGVRC-PPRGVLLFGPPGTGKTLIAKSIASQA 261
Query: 606 QANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVT 665
+A F +I + SKWVG++EK ++ +F A PAIIFIDE+D++ R E E T
Sbjct: 262 KAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKRSANENES-T 320
Query: 666 DRIINQLLTEMDGLVENS--GVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFE 723
R+ N+ L +DG N V+VI ATNRP LD A+ R RF R + VP P +AR +
Sbjct: 321 LRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRR--RFVRRLYVPLPTREARQK 378
Query: 724 IFKVHTRGMPLADDV-DLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEE 782
I + + DV + ELA T+GY+GAD+ +CR A+M LR L+P+++E
Sbjct: 379 IIEKLIHQVKHNLDVRQVIELAELTDGYSGADVDTLCRYASMAPLR----SLTPDQMEVI 434
Query: 783 SEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFE 820
L + VT DF+ AL+ + SV+ E +QFE
Sbjct: 435 ETHQLPA--VTMDDFKQALRVISKSVSS---EDCKQFE 467
Score = 158 bits (395), Expect = 3e-37
Identities = 109/328 (33%), Positives = 167/328 (50%), Gaps = 71/328 (21%)
Query: 211 YEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 270
+EDI GL+ A E + +PL+ P+LF + PP+GVLL+GPPGTGKTL+AK++A++A
Sbjct: 203 WEDIAGLESAKSTFLEAIIMPLRRPDLFTGVRC-PPRGVLLFGPPGTGKTLIAKSIASQA 261
Query: 271 NAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVEK 330
A F +IN + SK+ G++E+ ++ +F A + PAIIFIDE+D++ KR E
Sbjct: 262 KAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKRSANENESTL 321
Query: 331 RVVSQLLTLMDGLKSRG--KVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEI 388
R+ ++ L +DG S +V+VI ATNRP LD A+RR RF R + V +P ++ R++I
Sbjct: 322 RLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRR--RFVRRLYVPLPTREARQKI 379
Query: 389 LQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEEEIKDILRED 448
I+K+I +V K +++ ++
Sbjct: 380 ------------------------------------IEKLIHQV---KHNLDVRQVI--- 397
Query: 449 RNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALAREAAMVVLRRLIKEGKINPEAETIP 508
ELAE+T G+ GAD+ L R A+M LR L + E +P
Sbjct: 398 -----------------ELAELTDGYSGADVDTLCRYASMAPLRSLTPDQMEVIETHQLP 440
Query: 509 REVLEELKVTKADFYEALKMVEPSALRE 536
VT DF +AL+++ S E
Sbjct: 441 -------AVTMDDFKQALRVISKSVSSE 461
>emb|CAB95999.1| (AL360054) AAA family ATPase with similarity to katanin; putative
microtubule severing protein by similarity
[Schizosaccharomyces pombe]
Length = 741
Score = 183 bits (460), Expect = 6e-45
Identities = 113/304 (37%), Positives = 172/304 (56%), Gaps = 27/304 (8%)
Query: 532 SALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPG 591
S LRE+++ VHWDDI GLE K L+EAV +P P F+ L P +G+LL+GPPG
Sbjct: 444 SILREIVVSGDEVHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLR-EPARGMLLFGPPG 502
Query: 592 TGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDA 651
TGKT+LA+AVATES++ F +I + SK++GESEK +R +F A++ SP+IIF+DEID+
Sbjct: 503 TGKTMLARAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDS 562
Query: 652 IAPARGTAEGEKVTD-RIINQLLTEMDGL---------VENSGVVVIAATNRPDILDPAL 701
+ AR + E T RI + L + L ++ V+V+AATN P +D A
Sbjct: 563 LLSARSSDGNEHETSRRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATNLPWCIDDAA 622
Query: 702 LRPGRFDRLILVPAPDEKAR----FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAA 757
R RF R +P PDE R + K + L D++ + + TE Y+G+D+ A
Sbjct: 623 RR--RFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLE---DIEAIVKATEYYSGSDLTA 677
Query: 758 VCREAAMNALRRAVAKLSPEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYR 817
+ ++AAM LR L ++E + DF+ ++K ++PSV +E Y
Sbjct: 678 LAKDAAMGPLRSLGESLLFTKMESIRP-------INLDDFKTSIKVIRPSVNLQGLERYS 730
Query: 818 QFEE 821
++++
Sbjct: 731 EWDK 734
Score = 129 bits (322), Expect = 1e-28
Identities = 81/226 (35%), Positives = 129/226 (56%), Gaps = 21/226 (9%)
Query: 208 EVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVA 267
EV ++DI GL+ A ++E V P P+LF+ L EP +G+LL+GPPGTGKT+LA+AVA
Sbjct: 455 EVHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLR-EPARGMLLFGPPGTGKTMLARAVA 513
Query: 268 NEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGE 327
E+ + F +I+ + SK+ GESE+ +R +F A++ +P+IIF+DEID++ R E
Sbjct: 514 TESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSARSSDGNE 573
Query: 328 VE--KRVVSQLLTLMDGL---------KSRGKVIVIAATNRPDALDPALRRPGRFDREIE 376
E +R+ ++ L L +V+V+AATN P +D A RR RF R
Sbjct: 574 HETSRRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATNLPWCIDDAARR--RFVRRTY 631
Query: 377 VGVPDKQGRK----EILQIHTRGMPIEPDFEKETVIKALKELEKDD 418
+ +PD+ R+ +L+ + +E + E ++KA + D
Sbjct: 632 IPLPDETTRRLHLNNLLKYQKHSLSLE---DIEAIVKATEYYSGSD 674
>pir||H71952 ATP-dependent zinc metallopeptidase - Helicobacter pylori (strain
J99) >gi|4154795|gb|AAD05852.1| (AE001464) ATP-DEPENDENT
ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 182 bits (457), Expect = 1e-44
Identities = 109/288 (37%), Positives = 173/288 (59%), Gaps = 7/288 (2%)
Query: 544 VHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
V ++DI G+ +VK+EL E +++ LK PK ++ LGI PKGVLL GPPG GKT++AKA+A+
Sbjct: 159 VRFEDIAGVNEVKEELLEVIDY-LKNPKKYQDLGIFLPKGVLLVGPPGVGKTMIAKALAS 217
Query: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEK 663
E++ F G +VG K++ E+F A++ +P+IIFIDEIDA+ ARG ++
Sbjct: 218 EARVPFFYESGSAFSQIYVGAGAKKVHELFMHAKKHAPSIIFIDEIDALGKARGGHRSDE 277
Query: 664 VTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFE 723
+ +NQLLTEMDG ++N VVVI ATN+ +++D ALLR RFDR I + PD R
Sbjct: 278 -REATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLPDLLERQS 336
Query: 724 IFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEES 783
I + A +D ++A+ G++GA +A + E+A+NAL+ +++ ++ E
Sbjct: 337 ILEKLLENKKHA--LDYLKIAKICVGFSGAMLATLINESALNALKHQRKEITHGDILEVK 394
Query: 784 EK--FLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVGE 829
+K + K T + + L + S K + Y+ + E + ++GE
Sbjct: 395 DKIAYGKKKPQTLDENQKELVALYQS-AKALSAYWLEIEFDKASLLGE 441
Score = 150 bits (374), Expect = 8e-35
Identities = 79/182 (43%), Positives = 117/182 (63%), Gaps = 1/182 (0%)
Query: 209 VTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVAN 268
V +EDI G+ E E++ E+++ LK+P+ ++ LGI PKGVLL GPPG GKT++AKA+A+
Sbjct: 159 VRFEDIAGVNEVKEELLEVIDY-LKNPKKYQDLGIFLPKGVLLVGPPGVGKTMIAKALAS 217
Query: 269 EANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEV 328
EA F +G Y G +++ E+F A+++AP+IIFIDEIDA+ R +
Sbjct: 218 EARVPFFYESGSAFSQIYVGAGAKKVHELFMHAKKHAPSIIFIDEIDALGKARGGHRSDE 277
Query: 329 EKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEI 388
+ ++QLLT MDG +V+VI ATN+ + +D AL R RFDR I + +PD R+ I
Sbjct: 278 REATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLPDLLERQSI 337
Query: 389 LQ 390
L+
Sbjct: 338 LE 339
>pir||E64486 ATP-dependent 26S proteosome regulatory subunit 8 homolog -
Methanococcus jannaschii
Length = 373
Score = 179 bits (450), Expect = 1e-43
Identities = 98/251 (39%), Positives = 159/251 (63%), Gaps = 9/251 (3%)
Query: 546 WDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATES 605
+ +I G E+ K++ R +++ L+ PK F G PK VL YGPPGTGKTL+A+A+ATE+
Sbjct: 125 FSEIIGQEEAKKKCRIIMKY-LENPKLF---GEWAPKNVLFYGPPGTGKTLMARALATET 180
Query: 606 QANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVT 665
++FI ++ PE++ + VG++ K IRE++++A +++P I+FIDE+DAI +R
Sbjct: 181 NSSFILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDELDAIGLSREYQSLRGDV 240
Query: 666 DRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIF 725
++N LLTE+DG+ EN GVV IAATN P +LDPA+ RF+ I P+++ R +I
Sbjct: 241 SEVVNALLTELDGIKENEGVVTIAATNNPAMLDPAI--RSRFEEEIEFKLPNDEERLKIM 298
Query: 726 KVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEK 785
+++ + MPL +LKE +T+G++G DI + AL RA+ + +E+ E
Sbjct: 299 ELYAKKMPLPVKANLKEFVEKTKGFSGRDIK---EKFLKPALHRAILEDRDYVSKEDLEW 355
Query: 786 FLKSLIVTRKD 796
LK ++ R++
Sbjct: 356 ALKKILGNRRE 366
Score = 165 bits (414), Expect = 2e-39
Identities = 107/286 (37%), Positives = 168/286 (58%), Gaps = 17/286 (5%)
Query: 173 FMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPL 232
F V++T PK IT T V L +V + + + +I G +EA +K R +++ L
Sbjct: 88 FKVISTYPKEGGMITSET-VFKLQTPKKVLRTQFKKAKFSEIIGQEEAKKKCRIIMKY-L 145
Query: 233 KHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEE 292
++P+LF G PK VL YGPPGTGKTL+A+A+A E N+ FI + PE++ ++ G++ +
Sbjct: 146 ENPKLF---GEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASK 202
Query: 293 RLREIFKEAEENAPAIIFIDEIDAIAPKRE--EVVGEVEKRVVSQLLTLMDGLKSRGKVI 350
+RE+++ A E+AP I+FIDE+DAI RE + G+V + VV+ LLT +DG+K V+
Sbjct: 203 MIRELYQRASESAPCIVFIDELDAIGLSREYQSLRGDVSE-VVNALLTELDGIKENEGVV 261
Query: 351 VIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKA 410
IAATN P LDPA+R RF+ EIE +P+ + R +I++++ + MP+ + ++
Sbjct: 262 TIAATNNPAMLDPAIR--SRFEEEIEFKLPNDEERLKIMELYAKKMPLPVKANLKEFVEK 319
Query: 411 LKELEKDD---RFDKEKIKKII----EKVSKAKSEEEIKDILREDR 449
K D +F K + + I + VSK E +K IL R
Sbjct: 320 TKGFSGRDIKEKFLKPALHRAILEDRDYVSKEDLEWALKKILGNRR 365
>sp|Q58889|PRS2_METJA PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HOMOLOG MJ1494
>gi|2826420|gb|AAB99505.1| (U67590) AAA superfamily
ATPase, similar to FtsH [Methanococcus jannaschii]
Length = 371
Score = 179 bits (450), Expect = 1e-43
Identities = 98/251 (39%), Positives = 159/251 (63%), Gaps = 9/251 (3%)
Query: 546 WDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATES 605
+ +I G E+ K++ R +++ L+ PK F G PK VL YGPPGTGKTL+A+A+ATE+
Sbjct: 123 FSEIIGQEEAKKKCRIIMKY-LENPKLF---GEWAPKNVLFYGPPGTGKTLMARALATET 178
Query: 606 QANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEKVT 665
++FI ++ PE++ + VG++ K IRE++++A +++P I+FIDE+DAI +R
Sbjct: 179 NSSFILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDELDAIGLSREYQSLRGDV 238
Query: 666 DRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIF 725
++N LLTE+DG+ EN GVV IAATN P +LDPA+ RF+ I P+++ R +I
Sbjct: 239 SEVVNALLTELDGIKENEGVVTIAATNNPAMLDPAI--RSRFEEEIEFKLPNDEERLKIM 296
Query: 726 KVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEEESEK 785
+++ + MPL +LKE +T+G++G DI + AL RA+ + +E+ E
Sbjct: 297 ELYAKKMPLPVKANLKEFVEKTKGFSGRDIK---EKFLKPALHRAILEDRDYVSKEDLEW 353
Query: 786 FLKSLIVTRKD 796
LK ++ R++
Sbjct: 354 ALKKILGNRRE 364
Score = 165 bits (414), Expect = 2e-39
Identities = 107/286 (37%), Positives = 168/286 (58%), Gaps = 17/286 (5%)
Query: 173 FMVVNTIPKGIVQITYNTEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPL 232
F V++T PK IT T V L +V + + + +I G +EA +K R +++ L
Sbjct: 86 FKVISTYPKEGGMITSET-VFKLQTPKKVLRTQFKKAKFSEIIGQEEAKKKCRIIMKY-L 143
Query: 233 KHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEE 292
++P+LF G PK VL YGPPGTGKTL+A+A+A E N+ FI + PE++ ++ G++ +
Sbjct: 144 ENPKLF---GEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASK 200
Query: 293 RLREIFKEAEENAPAIIFIDEIDAIAPKRE--EVVGEVEKRVVSQLLTLMDGLKSRGKVI 350
+RE+++ A E+AP I+FIDE+DAI RE + G+V + VV+ LLT +DG+K V+
Sbjct: 201 MIRELYQRASESAPCIVFIDELDAIGLSREYQSLRGDVSE-VVNALLTELDGIKENEGVV 259
Query: 351 VIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKA 410
IAATN P LDPA+R RF+ EIE +P+ + R +I++++ + MP+ + ++
Sbjct: 260 TIAATNNPAMLDPAIR--SRFEEEIEFKLPNDEERLKIMELYAKKMPLPVKANLKEFVEK 317
Query: 411 LKELEKDD---RFDKEKIKKII----EKVSKAKSEEEIKDILREDR 449
K D +F K + + I + VSK E +K IL R
Sbjct: 318 TKGFSGRDIKEKFLKPALHRAILEDRDYVSKEDLEWALKKILGNRR 363
>sp|P40328|TBP6_YEAST PROBABLE 26S PROTEASE SUBUNIT YTA6 (TAT-BINDING HOMOLOG 6)
>gi|531761|emb|CAA56959.1| (X81071) probable regulatory
subunit of 26S protease [Saccharomyces cerevisiae]
Length = 446
Score = 178 bits (447), Expect = 2e-43
Identities = 111/308 (36%), Positives = 180/308 (58%), Gaps = 26/308 (8%)
Query: 519 KADFYEALKMVEPSA----LREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFK 574
K D ++++ V+ +A L E+L+ V+W+DI GL + K L+EAV +P P FK
Sbjct: 143 KEDILKSVQGVDRNACEQILNEILVTDEKVYWEDIAGLRNAKNSLKEAVVYPFLRPDLFK 202
Query: 575 RLGITPPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFR 634
L P +G+LL+GPPGTGKT++AKAVATES + F ++ +LSK++GESEK +R +F
Sbjct: 203 GLR-EPVRGMLLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESEKLVRALFY 261
Query: 635 KARQASPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVE------------N 682
A++ SP+IIFIDEID++ AR E E + RI +LL + L +
Sbjct: 262 MAKKLSPSIIFIDEIDSMLTARSDNENES-SRRIKTELLIQWSSLSSATAQSEDRNNTLD 320
Query: 683 SGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR-FEIFKVHTRGMPLADDVDLK 741
S V+V+ ATN P +D A R RF R + +P PD + R + + ++ + D+D +
Sbjct: 321 SRVLVLGATNLPWAIDDAARR--RFSRKLYIPLPDYETRLYHLKRLMAKQKNSLQDLDYE 378
Query: 742 ELARRTEGYTGADIAAVCREAAMNALRRAVAKLSPEELEE----ESEKFLKSLIVTRKDF 797
+ TEG++G+D+ ++ +EAAM +R KL + ++ E ++F + + +K+
Sbjct: 379 LITEMTEGFSGSDLTSLAKEAAMEPIRDLGDKLMFADFDKIRGIEIKRFSECSVDNKKER 438
Query: 798 EV-ALKKV 804
V +L+K+
Sbjct: 439 VVRSLQKI 446
Score = 148 bits (370), Expect = 2e-34
Identities = 120/377 (31%), Positives = 181/377 (47%), Gaps = 88/377 (23%)
Query: 130 PVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQITYN 189
PV+ V + M SGTP E + S K I K + + N
Sbjct: 107 PVLVSATAVPAESKPMRSKSGTPDKE------SSASSSLDSRK----EDILKSVQGVDRN 156
Query: 190 TEVEVLPQAVEVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGV 249
++L + + V +EK V +EDI GL+ A ++E V P P+LF+ L EP +G+
Sbjct: 157 ACEQILNEIL-VTDEK---VYWEDIAGLRNAKNSLKEAVVYPFLRPDLFKGLR-EPVRGM 211
Query: 250 LLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAII 309
LL+GPPGTGKT++AKAVA E+N+ F +++ ++SKY GESE+ +R +F A++ +P+II
Sbjct: 212 LLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESEKLVRALFYMAKKLSPSII 271
Query: 310 FIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSR------------GKVIVIAATNR 357
FIDEID++ R + E +R+ ++LL L S +V+V+ ATN
Sbjct: 272 FIDEIDSMLTARSDNENESSRRIKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNL 331
Query: 358 PDALDPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKD 417
P A+D A RR RF R++ + +PD ET + LK L
Sbjct: 332 PWAIDDAARR--RFSRKLYIPLPD----------------------YETRLYHLKRL--- 364
Query: 418 DRFDKEKIKKIIEKVSKAKSEEEIKDILREDRNLYIEVRTKLIDKLLDELAEVTHGFVGA 477
AK + ++D+ D L + E+T GF G+
Sbjct: 365 ----------------MAKQKNSLQDL---DYEL---------------ITEMTEGFSGS 390
Query: 478 DLAALAREAAMVVLRRL 494
DL +LA+EAAM +R L
Sbjct: 391 DLTSLAKEAAMEPIRDL 407
>pir||T49647 MSP1 related protein [imported] - Neurospora crassa
>gi|7801053|emb|CAB91448.1| (AL355933) MSP1 related
protein [Neurospora crassa]
Length = 1104
Score = 175 bits (439), Expect = 2e-42
Identities = 120/321 (37%), Positives = 172/321 (53%), Gaps = 28/321 (8%)
Query: 538 LIEVPNVH--WDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPK---GVLLYGPPGT 592
L+ ++H +DDI + K+ L L+ P AF G+ + G LLYGPPGT
Sbjct: 750 LVNAKDIHTTFDDIIVPAETKESLIGLTSLSLQRPDAFA-YGVLKTERIPGCLLYGPPGT 808
Query: 593 GKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAI 652
GKTLLAKAVA ES AN + + + W+G+SEK +R +F AR+ SP +IF+DE DA+
Sbjct: 809 GKTLLAKAVAKESGANMLEVSAASINDMWLGQSEKNVRALFSLARKLSPMVIFLDEADAL 868
Query: 653 APARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLIL 712
AR G I Q L E DGL + +++ ATNRP LD A+LR R R IL
Sbjct: 869 LGARHNNPGRTAHRETITQFLREWDGLSDMRAFIMV-ATNRPFDLDEAVLR--RLPRKIL 925
Query: 713 VPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRR--- 769
V P R +I KV R LA DVDL LA+ T+ Y+G+D+ +C AAM A+R
Sbjct: 926 VDLPLVAERAKILKVMLREEQLAPDVDLDALAKETDLYSGSDLKNLCVSAAMEAVREECR 985
Query: 770 ---------AVAKLSPEELEEESE-----KFLKSLIVTRKDFEVALKKVKPSVTKYM--M 813
A A + E EEE +F + ++TRK FE ++++ S+++ M +
Sbjct: 986 AKEAHDAAMAAAVAAHSEKEEEGSNRPAYEFPERRVLTRKHFEKGMREISASISEDMESL 1045
Query: 814 EYYRQFEESRKRMVGESTGRE 834
+ R+F+E G++ R+
Sbjct: 1046 KAIRKFDEQYGDAGGKAARRK 1066
Score = 116 bits (288), Expect = 9e-25
Identities = 76/203 (37%), Positives = 111/203 (54%), Gaps = 6/203 (2%)
Query: 210 TYEDIGGLKEAIEKIREMVELPLKHPELFER--LGIEPPKGVLLYGPPGTGKTLLAKAVA 267
T++DI E E + + L L+ P+ F L E G LLYGPPGTGKTLLAKAVA
Sbjct: 759 TFDDIIVPAETKESLIGLTSLSLQRPDAFAYGVLKTERIPGCLLYGPPGTGKTLLAKAVA 818
Query: 268 NEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGE 327
E+ A + ++ I + G+SE+ +R +F A + +P +IF+DE DA+ R G
Sbjct: 819 KESGANMLEVSAASINDMWLGQSEKNVRALFSLARKLSPMVIFLDEADALLGARHNNPGR 878
Query: 328 VEKR-VVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRK 386
R ++Q L DGL S + ++ ATNRP LD A+ R R R+I V +P R
Sbjct: 879 TAHRETITQFLREWDGL-SDMRAFIMVATNRPFDLDEAVLR--RLPRKILVDLPLVAERA 935
Query: 387 EILQIHTRGMPIEPDFEKETVIK 409
+IL++ R + PD + + + K
Sbjct: 936 KILKVMLREEQLAPDVDLDALAK 958
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.138 0.383
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 309071800
Number of Sequences: 2977
Number of extensions: 13974348
Number of successful extensions: 62994
Number of sequences better than 1.0e-10: 537
Number of HSP's better than 0.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 59057
Number of HSP's gapped (non-prelim): 1649
length of query: 840
length of database: 189,106,746
effective HSP length: 61
effective length of query: 779
effective length of database: 152,599,039
effective search space: 118874651381
effective search space used: 118874651381
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 169 (70.2 bits)