BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1492 (PAB1492) DE:Hypothetical protein
(170 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75043 hypothetical protein PAB1492 - Pyrococcus abyssi (st... 337 5e-92
pir||C71117 hypothetical protein PH0706 - Pyrococcus horikoshii ... 326 1e-88
pir||E69029 hypothetical protein MTH1217 - Methanobacterium ther... 129 3e-29
gb|AAK40518.1| Conserved hypothetical protein [Sulfolobus solfat... 83 2e-15
>pir||G75043 hypothetical protein PAB1492 - Pyrococcus abyssi (strain Orsay)
>gi|5458757|emb|CAB50244.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 170
Score = 337 bits (855), Expect = 5e-92
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 1 MKAPICEVCLKTDGILCPADEKKLEEGIITELDVKISRMLYKLLGDADIEFKKAVEAGDL 60
MKAPICEVCLKTDGILCPADEKKLEEGIITELDVKISRMLYKLLGDADIEFKKAVEAGDL
Sbjct: 1 MKAPICEVCLKTDGILCPADEKKLEEGIITELDVKISRMLYKLLGDADIEFKKAVEAGDL 60
Query: 61 VVLIVGEGDVPIVIGKGGKNIKYLTRELGKRVRVIEGREIRGTEDVKKLAIDLLYPAGVF 120
VVLIVGEGDVPIVIGKGGKNIKYLTRELGKRVRVIEGREIRGTEDVKKLAIDLLYPAGVF
Sbjct: 61 VVLIVGEGDVPIVIGKGGKNIKYLTRELGKRVRVIEGREIRGTEDVKKLAIDLLYPAGVF 120
Query: 121 GVNIVYKPDGGKYYKILVFSRDRNKLPEKAEVLESILSQITGVEAKIFFI 170
GVNIVYKPDGGKYYKILVFSRDRNKLPEKAEVLESILSQITGVEAKIFFI
Sbjct: 121 GVNIVYKPDGGKYYKILVFSRDRNKLPEKAEVLESILSQITGVEAKIFFI 170
>pir||C71117 hypothetical protein PH0706 - Pyrococcus horikoshii
>gi|3257114|dbj|BAA29797.1| (AP000003) 185aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 185
Score = 326 bits (826), Expect = 1e-88
Identities = 163/170 (95%), Positives = 168/170 (97%)
Query: 1 MKAPICEVCLKTDGILCPADEKKLEEGIITELDVKISRMLYKLLGDADIEFKKAVEAGDL 60
MKAPICEVCLKTDGILCPADEKKLEEGIITELDVKISRMLYKLLGDADIEFKKAVEAGDL
Sbjct: 16 MKAPICEVCLKTDGILCPADEKKLEEGIITELDVKISRMLYKLLGDADIEFKKAVEAGDL 75
Query: 61 VVLIVGEGDVPIVIGKGGKNIKYLTRELGKRVRVIEGREIRGTEDVKKLAIDLLYPAGVF 120
VVLIVGEGDVPIVIGKGGKNIKYLTRELGKRVRVIEGR+I+ TEDVKKLAIDLLYPAGVF
Sbjct: 76 VVLIVGEGDVPIVIGKGGKNIKYLTRELGKRVRVIEGRDIKSTEDVKKLAIDLLYPAGVF 135
Query: 121 GVNIVYKPDGGKYYKILVFSRDRNKLPEKAEVLESILSQITGVEAKIFFI 170
GVNIVY+PDG KYYKILVFSRD+NKLPEKAEVLESIL+QITGVEAKIFFI
Sbjct: 136 GVNIVYRPDGEKYYKILVFSRDKNKLPEKAEVLESILTQITGVEAKIFFI 185
>pir||E69029 hypothetical protein MTH1217 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622327|gb|AAB85706.1| (AE000889)
unknown [Methanobacterium thermoautotrophicum]
Length = 183
Score = 129 bits (320), Expect = 3e-29
Identities = 65/162 (40%), Positives = 108/162 (66%), Gaps = 7/162 (4%)
Query: 1 MKAPICEVCLKTDGILCPADEKKLEEGIITELDVKISRMLYKLLGDADIEFKKAVEAGDL 60
M PIC+VCLK+ GILC E KL+ G +T+ +++I+++LY++ G+ + FK+A++ +
Sbjct: 19 MVLPICDVCLKS-GILCQGCENKLKTGEVTQTELEIAKVLYRI-GEGKLGFKRAIDLDGI 76
Query: 61 VVLIVGEGDVPIVIGKGGKNIKYLTRELGKRVRVIEGREIRGTEDVKKLAIDLLYPAGVF 120
V++I G+V +IGKGGK +K ++R +GK+VRV+ + D+K +A D+L PA +
Sbjct: 77 VIIITEAGEVGKLIGKGGKIVKAISRAIGKKVRVVGEKS-----DLKSVAEDVLAPARIS 131
Query: 121 GVNIVYKPDGGKYYKILVFSRDRNKLPEKAEVLESILSQITG 162
G+NIV+ DG + +KI V D ++P K E L +I+ +TG
Sbjct: 132 GINIVFGKDGEERFKIRVMREDARRVPGKLETLNNIIEMLTG 173
>gb|AAK40518.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 170
Score = 83.1 bits (202), Expect = 2e-15
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 12/172 (6%)
Query: 1 MKAPICEVCLKTDGILCPADEKKLEEGIITELDVKISRMLYKLLGDA-----DIEFKKAV 55
MK P+ VC+++ G+LC + ++ G + E +V+I ++L L D + KA
Sbjct: 3 MKIPLDYVCVRS-GLLCNRCQSLIDSGEVFEYEVEIIKILLDLEETQFKELKDSTYHKAY 61
Query: 56 EAGDLVVLIVGEGDVPIVIGKGGKNIKYLTRELGKRVRVIEGREIRGTEDVKKLAIDLLY 115
+ DL++L+V G + K K + L +L +VRV+E T +K A+ LL
Sbjct: 62 KVDDLLILLVTSGQ-EMTQQKWIKIARILQEKLNIKVRVLEK-----TNSIKNSAVQLLS 115
Query: 116 PAGVFGVNIVYKPDGGKYYKILVFSRDRNKLPEKAEVLESILSQITGVEAKI 167
PA V GVN V+ PDG Y I V +R LP +A++LES L++I +I
Sbjct: 116 PARVLGVNTVWMPDGSVQYVIRVSRSERRLLPAEAQLLESALTKIHSTPVRI 167
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.145 0.406
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62461751
Number of Sequences: 2977
Number of extensions: 2633923
Number of successful extensions: 6698
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6693
Number of HSP's gapped (non-prelim): 4
length of query: 170
length of database: 189,106,746
effective HSP length: 53
effective length of query: 117
effective length of database: 157,386,935
effective search space: 18414271395
effective search space used: 18414271395
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)