BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1493 (PAB1493) DE:Hypothetical protein
         (137 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75043 hypothetical protein PAB1493 - Pyrococcus abyssi (st...   268  2e-71
pir||D71117 hypothetical protein PH0707 - Pyrococcus horikoshii ...   189  1e-47
pir||D71015 hypothetical protein PH1418 - Pyrococcus horikoshii ...    83  2e-15
pir||C75117 hypothetical protein PAB0504 - Pyrococcus abyssi (st...    76  2e-13

>pir||F75043 hypothetical protein PAB1493 - Pyrococcus abyssi (strain Orsay)
           >gi|5458756|emb|CAB50243.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 137
           
 Score =  268 bits (678), Expect = 2e-71
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MSIKLIIKPDRGFGKIKVKLSDEIEAKILELSNKFGVPVERILEILILEDFKDPPAINIE 60
           MSIKLIIKPDRGFGKIKVKLSDEIEAKILELSNKFGVPVERILEILILEDFKDPPAINIE
Sbjct: 1   MSIKLIIKPDRGFGKIKVKLSDEIEAKILELSNKFGVPVERILEILILEDFKDPPAINIE 60

Query: 61  DLEKEISELEKKVWELEMEFAPLKFKAYNLTQENKLLAIELSGLLAENVQLKRFLKKKID 120
           DLEKEISELEKKVWELEMEFAPLKFKAYNLTQENKLLAIELSGLLAENVQLKRFLKKKID
Sbjct: 61  DLEKEISELEKKVWELEMEFAPLKFKAYNLTQENKLLAIELSGLLAENVQLKRFLKKKID 120

Query: 121 RNIELRKLITYYMNLGG 137
           RNIELRKLITYYMNLGG
Sbjct: 121 RNIELRKLITYYMNLGG 137


>pir||D71117 hypothetical protein PH0707 - Pyrococcus horikoshii
           >gi|3257115|dbj|BAA29798.1| (AP000003) 133aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 133
           
 Score =  189 bits (475), Expect = 1e-47
 Identities = 92/133 (69%), Positives = 112/133 (84%)

Query: 3   IKLIIKPDRGFGKIKVKLSDEIEAKILELSNKFGVPVERILEILILEDFKDPPAINIEDL 62
           +K+ IKPD+GFGKI  +L D I  +IL+L  +F VP+ERIL+I+I  +FK P + NIE  
Sbjct: 1   MKVTIKPDKGFGKITFELDDYIANEILKLGEEFKVPIERILQIIIFSEFKKPSSSNIEKA 60

Query: 63  EKEISELEKKVWELEMEFAPLKFKAYNLTQENKLLAIELSGLLAENVQLKRFLKKKIDRN 122
           E+EI +LEKKVW LEMEFAPLKFKAYN+TQENKLLAIE+SGLLAENVQLKRFLK KIDRN
Sbjct: 61  EEEIKKLEKKVWNLEMEFAPLKFKAYNVTQENKLLAIEVSGLLAENVQLKRFLKMKIDRN 120

Query: 123 IELRKLITYYMNL 135
           +ELRK+I+YYM +
Sbjct: 121 VELRKIISYYMGV 133


>pir||D71015 hypothetical protein PH1418 - Pyrococcus horikoshii
           >gi|3257841|dbj|BAA30524.1| (AP000006) 143aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 143
           
 Score = 82.7 bits (201), Expect = 2e-15
 Identities = 49/137 (35%), Positives = 90/137 (64%), Gaps = 10/137 (7%)

Query: 3   IKLIIKPDRGFGKIKVKLSDEIEAKILELSNKFGVPVERILEILILE---DFKDPPAINI 59
           +K+  K +R F K+ ++L D      L+L ++ G  VE IL  + ++   +F+      I
Sbjct: 1   MKVTFKKNR-FTKVTIELPDYA----LKLCHELGFSVEEILREIFIKGNTEFEGHSEDEI 55

Query: 60  EDLEKEISELEKKVWELEMEFAPLKFKAYNLTQENKLLAIELSGLLAENVQLKRFLKKKI 119
           ++LEK+I+E+EK+++ELE  ++ L+FK + ++ +N+ LAI++SGL+AEN +L+R L    
Sbjct: 56  KELEKKINEVEKRLYELEGSWSSLRFKLFQISSDNRNLAIQISGLIAENRRLRRMLNLP- 114

Query: 120 DRNIE-LRKLITYYMNL 135
           +RN E + ++I YY+N+
Sbjct: 115 ERNFEYVEEIIKYYLNI 131


>pir||C75117 hypothetical protein PAB0504 - Pyrococcus abyssi (strain Orsay)
           >gi|5458163|emb|CAB49652.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 131
           
 Score = 76.1 bits (184), Expect = 2e-13
 Identities = 41/120 (34%), Positives = 74/120 (61%), Gaps = 3/120 (2%)

Query: 19  KLSDEIEAKILELSNKFGVPVERILEILILE---DFKDPPAINIEDLEKEISELEKKVWE 75
           +++ EI    +E+  + G  +E +L+ L LE   DF+      +  LE +I + E+K++E
Sbjct: 12  RITVEIPTNAVEVCEELGFSLEEVLKKLFLEGNFDFEIHSEEEVMQLEMKIRDTERKLYE 71

Query: 76  LEMEFAPLKFKAYNLTQENKLLAIELSGLLAENVQLKRFLKKKIDRNIELRKLITYYMNL 135
           LE  ++ LKFK + +  +N+ LAI++SGL++EN +L++FL        ++ +LI YY+NL
Sbjct: 72  LEGSWSSLKFKLFQVYSDNRNLAIQISGLVSENKRLRKFLNLPSRDFRDVEELIRYYLNL 131


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.141    0.380 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47399869
Number of Sequences: 2977
Number of extensions: 1835893
Number of successful extensions: 12195
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12189
Number of HSP's gapped (non-prelim): 4
length of query: 137
length of database: 189,106,746
effective HSP length: 56
effective length of query: 81
effective length of database: 155,591,474
effective search space: 12602909394
effective search space used: 12602909394
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 161 (67.1 bits)