BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1496 (PAB1496) DE:Hypothetical protein
         (208 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75043 hypothetical protein PAB1496 - Pyrococcus abyssi (st...   423  e-118
pir||A71118 hypothetical protein PH0712 - Pyrococcus horikoshii ...   254  5e-67
gi|11499297 A. fulgidus predicted coding region AF1707 [Archaeog...   119  2e-26
pir||G69225 hypothetical protein MTH939 - Methanobacterium therm...    82  7e-15

>pir||B75043 hypothetical protein PAB1496 - Pyrococcus abyssi (strain Orsay)
           >gi|5458752|emb|CAB50239.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 208
           
 Score =  423 bits (1077), Expect = e-118
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MPRLRLGEKEVEYKVIVKPVKYVTIRILEDGTLLVVSPSEEIVEYVLRKKSRWILSKLRL 60
           MPRLRLGEKEVEYKVIVKPVKYVTIRILEDGTLLVVSPSEEIVEYVLRKKSRWILSKLRL
Sbjct: 1   MPRLRLGEKEVEYKVIVKPVKYVTIRILEDGTLLVVSPSEEIVEYVLRKKSRWILSKLRL 60

Query: 61  VEDAIRFSNSGFPLFGEFLSVENAPSREEIKRMLRKEVLNIAGEVGRALKVRPKRVYIKV 120
           VEDAIRFSNSGFPLFGEFLSVENAPSREEIKRMLRKEVLNIAGEVGRALKVRPKRVYIKV
Sbjct: 61  VEDAIRFSNSGFPLFGEFLSVENAPSREEIKRMLRKEVLNIAGEVGRALKVRPKRVYIKV 120

Query: 121 MKRKWGSTTWRGSITIDLSAAALPRDLLHYLVTHEMCHLIEMNHGKKFWSLVSRFHPDYK 180
           MKRKWGSTTWRGSITIDLSAAALPRDLLHYLVTHEMCHLIEMNHGKKFWSLVSRFHPDYK
Sbjct: 121 MKRKWGSTTWRGSITIDLSAAALPRDLLHYLVTHEMCHLIEMNHGKKFWSLVSRFHPDYK 180

Query: 181 EKRRELKRWWFIVRNNEVWKAILRLSEG 208
           EKRRELKRWWFIVRNNEVWKAILRLSEG
Sbjct: 181 EKRRELKRWWFIVRNNEVWKAILRLSEG 208


>pir||A71118 hypothetical protein PH0712 - Pyrococcus horikoshii
           >gi|3257120|dbj|BAA29803.1| (AP000003) 230aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 230
           
 Score =  254 bits (643), Expect = 5e-67
 Identities = 121/219 (55%), Positives = 155/219 (70%), Gaps = 14/219 (6%)

Query: 4   LRLGEKEVEYKVIVKPVKYVTIRILEDGTLLVVSPSEEIVEYVLRKKSRWILSKLRLVED 63
           + L  K V YKV+ KPVKYVT+R LEDGTLLVV+PS+EIV  VL KK  WILSKL ++E+
Sbjct: 5   ITLDGKIVRYKVVEKPVKYVTLRFLEDGTLLVVTPSKEIVREVLIKKRNWILSKLSIIEE 64

Query: 64  AIRFSNSGFPLFGEFLSVENA--------------PSREEIKRMLRKEVLNIAGEVGRAL 109
           A   +  GFPLFG F S+E                P  + ++  ++KEV   A E+ +  
Sbjct: 65  AKELAGEGFPLFGRFYSLEIGEKFEIDDKNRIIIYPGIDVLRDWIKKEVKRRAQEISKEF 124

Query: 110 KVRPKRVYIKVMKRKWGSTTWRGSITIDLSAAALPRDLLHYLVTHEMCHLIEMNHGKKFW 169
            V PKR+Y++VMK KWGSTTWR S+T++LS+ ALP +L HYLV HE+ HLIE+NH K+FW
Sbjct: 125 GVAPKRIYVRVMKTKWGSTTWRKSVTLNLSSVALPEELFHYLVIHELAHLIELNHSKRFW 184

Query: 170 SLVSRFHPDYKEKRRELKRWWFIVRNNEVWKAILRLSEG 208
           S+V+R+HPDYKEKRRELK+WWFIV  NE W+AIL+   G
Sbjct: 185 SIVARYHPDYKEKRRELKKWWFIVHLNETWRAILQWPGG 223


>gi|11499297 A. fulgidus predicted coding region AF1707 [Archaeoglobus fulgidus]
           >gi|7483698|pir||B69463 hypothetical protein AF1707 -
           Archaeoglobus fulgidus >gi|2648844|gb|AAB89540.1|
           (AE000985) A. fulgidus predicted coding region AF1707
           [Archaeoglobus fulgidus]
           Length = 219
           
 Score =  119 bits (296), Expect = 2e-26
 Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 23/211 (10%)

Query: 18  KPVKYVTIRILEDGTLLVVSPSEEIVEYVLRKKSRWILSKLRLVEDAIR----------- 66
           K V+ V I++L DG + VV+P +  V+  + K + WI  K   +E               
Sbjct: 8   KNVRNVRIQVLADGKVRVVAPPDFDVDSFISKHADWIKKKRAEIESLAEEIKGKERMLLL 67

Query: 67  -------FSNSGFPLF-GEFLSVENAPSREEIKR----MLRKEVLNIAGEVGRALKVRPK 114
                    +SGF +  GE + V    S   +KR    +LR+E+        R L +   
Sbjct: 68  NGKFYHLVKDSGFEIKEGEEVGVVKYYSLRNLKRNLASILREELKRNVSFYSRLLGINYG 127

Query: 115 RVYIKVMKRKWGSTTWRGSITIDLSAAALPRDLLHYLVTHEMCHLIEMNHGKKFWSLVSR 174
           R++IK+ K KW S + +G+++ +L++ ALP  L  Y+V HE+ HL+E  H + FW  V  
Sbjct: 128 RIFIKMQKTKWASCSSKGNLSFNLASLALPEKLREYIVVHELVHLLEPKHSRLFWETVGF 187

Query: 175 FHPDYKEKRRELKRWWFIVRNNEVWKAILRL 205
           ++P+Y+E  RELK++W  V  NEVW+ +  L
Sbjct: 188 YYPEYEEAERELKKYWIFVERNEVWRMLRAL 218


>pir||G69225 hypothetical protein MTH939 - Methanobacterium thermoautotrophicum
           (strain Delta H) >gi|2622037|gb|AAB85437.1| (AE000868)
           unknown [Methanobacterium thermoautotrophicum]
           Length = 188
           
 Score = 81.5 bits (198), Expect = 7e-15
 Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 16/192 (8%)

Query: 1   MPRLRLGEKEVEYKVIVKPVKYVTIRILEDGTLLVVSPSEEIVE--YVLRKKSRWILSKL 58
           M R   G+ EV  +VI + VK   I +  D   L++ P++   +   VL  +S WI  K+
Sbjct: 1   MDRFMAGDLEVRCEVIYRRVKNPRIELRFDSLRLIL-PADFTGDPMEVLSSRSDWIQRKI 59

Query: 59  RLVEDAIRFSNSGFPLFGEFLSVENAPSREEIKRMLRKEVLNIAGEVGRALKVRPKRVYI 118
               + +  ++         + +E    +E     LR  V          L V   RV  
Sbjct: 60  HEFHEMLERASD--------MELEYRRDKE-----LRSLVSGFLDHYSDVLGVEYGRVRF 106

Query: 119 KVMKRKWGSTTWRGSITIDLSAAALPRDLLHYLVTHEMCHLIEMNHGKKFWSLVSRFHPD 178
           + M+ +WGS + RG+++ +   + LP  ++ Y+V HE+ HL EMNH  +FW ++    PD
Sbjct: 107 RRMRSRWGSCSSRGNLSFNTLLSHLPDRMVEYVVLHELAHLREMNHSPRFWGILESEMPD 166

Query: 179 YKEKRRELKRWW 190
             E+RR L+ +W
Sbjct: 167 CTERRRMLRYYW 178


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.139    0.420 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77915343
Number of Sequences: 2977
Number of extensions: 3089403
Number of successful extensions: 9089
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9083
Number of HSP's gapped (non-prelim): 4
length of query: 208
length of database: 189,106,746
effective HSP length: 52
effective length of query: 156
effective length of database: 157,985,422
effective search space: 24645725832
effective search space used: 24645725832
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)