BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1496 (PAB1496) DE:Hypothetical protein
(208 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75043 hypothetical protein PAB1496 - Pyrococcus abyssi (st... 423 e-118
pir||A71118 hypothetical protein PH0712 - Pyrococcus horikoshii ... 254 5e-67
gi|11499297 A. fulgidus predicted coding region AF1707 [Archaeog... 119 2e-26
pir||G69225 hypothetical protein MTH939 - Methanobacterium therm... 82 7e-15
>pir||B75043 hypothetical protein PAB1496 - Pyrococcus abyssi (strain Orsay)
>gi|5458752|emb|CAB50239.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 208
Score = 423 bits (1077), Expect = e-118
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MPRLRLGEKEVEYKVIVKPVKYVTIRILEDGTLLVVSPSEEIVEYVLRKKSRWILSKLRL 60
MPRLRLGEKEVEYKVIVKPVKYVTIRILEDGTLLVVSPSEEIVEYVLRKKSRWILSKLRL
Sbjct: 1 MPRLRLGEKEVEYKVIVKPVKYVTIRILEDGTLLVVSPSEEIVEYVLRKKSRWILSKLRL 60
Query: 61 VEDAIRFSNSGFPLFGEFLSVENAPSREEIKRMLRKEVLNIAGEVGRALKVRPKRVYIKV 120
VEDAIRFSNSGFPLFGEFLSVENAPSREEIKRMLRKEVLNIAGEVGRALKVRPKRVYIKV
Sbjct: 61 VEDAIRFSNSGFPLFGEFLSVENAPSREEIKRMLRKEVLNIAGEVGRALKVRPKRVYIKV 120
Query: 121 MKRKWGSTTWRGSITIDLSAAALPRDLLHYLVTHEMCHLIEMNHGKKFWSLVSRFHPDYK 180
MKRKWGSTTWRGSITIDLSAAALPRDLLHYLVTHEMCHLIEMNHGKKFWSLVSRFHPDYK
Sbjct: 121 MKRKWGSTTWRGSITIDLSAAALPRDLLHYLVTHEMCHLIEMNHGKKFWSLVSRFHPDYK 180
Query: 181 EKRRELKRWWFIVRNNEVWKAILRLSEG 208
EKRRELKRWWFIVRNNEVWKAILRLSEG
Sbjct: 181 EKRRELKRWWFIVRNNEVWKAILRLSEG 208
>pir||A71118 hypothetical protein PH0712 - Pyrococcus horikoshii
>gi|3257120|dbj|BAA29803.1| (AP000003) 230aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 230
Score = 254 bits (643), Expect = 5e-67
Identities = 121/219 (55%), Positives = 155/219 (70%), Gaps = 14/219 (6%)
Query: 4 LRLGEKEVEYKVIVKPVKYVTIRILEDGTLLVVSPSEEIVEYVLRKKSRWILSKLRLVED 63
+ L K V YKV+ KPVKYVT+R LEDGTLLVV+PS+EIV VL KK WILSKL ++E+
Sbjct: 5 ITLDGKIVRYKVVEKPVKYVTLRFLEDGTLLVVTPSKEIVREVLIKKRNWILSKLSIIEE 64
Query: 64 AIRFSNSGFPLFGEFLSVENA--------------PSREEIKRMLRKEVLNIAGEVGRAL 109
A + GFPLFG F S+E P + ++ ++KEV A E+ +
Sbjct: 65 AKELAGEGFPLFGRFYSLEIGEKFEIDDKNRIIIYPGIDVLRDWIKKEVKRRAQEISKEF 124
Query: 110 KVRPKRVYIKVMKRKWGSTTWRGSITIDLSAAALPRDLLHYLVTHEMCHLIEMNHGKKFW 169
V PKR+Y++VMK KWGSTTWR S+T++LS+ ALP +L HYLV HE+ HLIE+NH K+FW
Sbjct: 125 GVAPKRIYVRVMKTKWGSTTWRKSVTLNLSSVALPEELFHYLVIHELAHLIELNHSKRFW 184
Query: 170 SLVSRFHPDYKEKRRELKRWWFIVRNNEVWKAILRLSEG 208
S+V+R+HPDYKEKRRELK+WWFIV NE W+AIL+ G
Sbjct: 185 SIVARYHPDYKEKRRELKKWWFIVHLNETWRAILQWPGG 223
>gi|11499297 A. fulgidus predicted coding region AF1707 [Archaeoglobus fulgidus]
>gi|7483698|pir||B69463 hypothetical protein AF1707 -
Archaeoglobus fulgidus >gi|2648844|gb|AAB89540.1|
(AE000985) A. fulgidus predicted coding region AF1707
[Archaeoglobus fulgidus]
Length = 219
Score = 119 bits (296), Expect = 2e-26
Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 23/211 (10%)
Query: 18 KPVKYVTIRILEDGTLLVVSPSEEIVEYVLRKKSRWILSKLRLVEDAIR----------- 66
K V+ V I++L DG + VV+P + V+ + K + WI K +E
Sbjct: 8 KNVRNVRIQVLADGKVRVVAPPDFDVDSFISKHADWIKKKRAEIESLAEEIKGKERMLLL 67
Query: 67 -------FSNSGFPLF-GEFLSVENAPSREEIKR----MLRKEVLNIAGEVGRALKVRPK 114
+SGF + GE + V S +KR +LR+E+ R L +
Sbjct: 68 NGKFYHLVKDSGFEIKEGEEVGVVKYYSLRNLKRNLASILREELKRNVSFYSRLLGINYG 127
Query: 115 RVYIKVMKRKWGSTTWRGSITIDLSAAALPRDLLHYLVTHEMCHLIEMNHGKKFWSLVSR 174
R++IK+ K KW S + +G+++ +L++ ALP L Y+V HE+ HL+E H + FW V
Sbjct: 128 RIFIKMQKTKWASCSSKGNLSFNLASLALPEKLREYIVVHELVHLLEPKHSRLFWETVGF 187
Query: 175 FHPDYKEKRRELKRWWFIVRNNEVWKAILRL 205
++P+Y+E RELK++W V NEVW+ + L
Sbjct: 188 YYPEYEEAERELKKYWIFVERNEVWRMLRAL 218
>pir||G69225 hypothetical protein MTH939 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622037|gb|AAB85437.1| (AE000868)
unknown [Methanobacterium thermoautotrophicum]
Length = 188
Score = 81.5 bits (198), Expect = 7e-15
Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 16/192 (8%)
Query: 1 MPRLRLGEKEVEYKVIVKPVKYVTIRILEDGTLLVVSPSEEIVE--YVLRKKSRWILSKL 58
M R G+ EV +VI + VK I + D L++ P++ + VL +S WI K+
Sbjct: 1 MDRFMAGDLEVRCEVIYRRVKNPRIELRFDSLRLIL-PADFTGDPMEVLSSRSDWIQRKI 59
Query: 59 RLVEDAIRFSNSGFPLFGEFLSVENAPSREEIKRMLRKEVLNIAGEVGRALKVRPKRVYI 118
+ + ++ + +E +E LR V L V RV
Sbjct: 60 HEFHEMLERASD--------MELEYRRDKE-----LRSLVSGFLDHYSDVLGVEYGRVRF 106
Query: 119 KVMKRKWGSTTWRGSITIDLSAAALPRDLLHYLVTHEMCHLIEMNHGKKFWSLVSRFHPD 178
+ M+ +WGS + RG+++ + + LP ++ Y+V HE+ HL EMNH +FW ++ PD
Sbjct: 107 RRMRSRWGSCSSRGNLSFNTLLSHLPDRMVEYVVLHELAHLREMNHSPRFWGILESEMPD 166
Query: 179 YKEKRRELKRWW 190
E+RR L+ +W
Sbjct: 167 CTERRRMLRYYW 178
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.139 0.420
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77915343
Number of Sequences: 2977
Number of extensions: 3089403
Number of successful extensions: 9089
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9083
Number of HSP's gapped (non-prelim): 4
length of query: 208
length of database: 189,106,746
effective HSP length: 52
effective length of query: 156
effective length of database: 157,985,422
effective search space: 24645725832
effective search space used: 24645725832
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)