BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1499 (pyrI) DE:aspartate carbamoyltransferase, regulatory
subunit (pyrI)
(152 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P77919|PYRI_PYRAB ASPARTATE CARBAMOYLTRANSFERASE REGULATORY C... 305 2e-82
sp|O58452|PYRI_PYRHO ASPARTATE CARBAMOYLTRANSFERASE REGULATORY C... 281 2e-75
sp|Q58801|PYRI_METJA ASPARTATE CARBAMOYLTRANSFERASE REGULATORY C... 169 2e-41
gi|11497727 aspartate carbamoyltransferase, regulatory subunit (... 165 3e-40
sp|O26938|PYRI_METTH ASPARTATE CARBAMOYLTRANSFERASE REGULATORY C... 163 8e-40
emb|CAC11714.1| (AL445064) probable aspartate carbamoyltransfera... 160 9e-39
sp|P74766|PYRI_SULAC ASPARTATE CARBAMOYLTRANSFERASE REGULATORY C... 156 1e-37
gb|AAK40924.1| Aspartate carbamoyltransferase regulatory chain ... 155 2e-37
sp|Q9UX07|PYRI_SULSO ASPARTATE CARBAMOYLTRANSFERASE REGULATORY C... 155 2e-37
gb|AAG20943.1| (AE005160) aspartate carbamoyltransferase regulat... 140 8e-33
sp|P19936|PYRI_SERMA ASPARTATE CARBAMOYLTRANSFERASE REGULATORY C... 133 1e-30
sp|P00478|PYRI_ECOLI ASPARTATE CARBAMOYLTRANSFERASE REGULATORY C... 131 6e-30
pdb|5AT1|B Chain B, Aspartate Carbamoyltransferase (Aspartate Tr... 129 1e-29
pir||D82010 aspartate carbamoyltransferase regulatory chain NMA0... 129 2e-29
sp|P57451|PYRI_BUCAI ASPARTATE CARBAMOYLTRANSFERASE REGULATORY C... 129 2e-29
sp|P08421|PYRI_SALTY ASPARTATE CARBAMOYLTRANSFERASE REGULATORY C... 129 2e-29
pdb|1NBE|B Chain B, Aspartate Transcarbomylase Regulatory Chain ... 129 2e-29
pdb|9ATC|B Chain B, Atcase Y165f Mutant 129 2e-29
pir||B81238 aspartate carbamoyltransferase, regulatory chain NMB... 129 2e-29
pdb|8ATC|B Chain B, Aspartate Carbamoyltransferase (Aspartate Tr... 128 3e-29
gb|AAF01339.1|AF190426_3 (AF190426) aspartate transcarbamylase r... 127 5e-29
pdb|2ATC|B Chain B, Aspartate Carbamoyltransferase (Aspartate Tr... 127 6e-29
prf||681084A transcarbamylase R,Asp [Escherichia coli] 126 1e-28
pdb|1RAA|B Chain B, Aspartate Transcarbamoylase (E.C.2.1.3.2) (A... 126 1e-28
pir||A82067 aspartate carbamoyltransferase, regulatory chain VC2... 125 3e-28
pdb|1RAI|D Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2) (A... 124 4e-28
pir||B72547 probable aspartate carbamoyltransferase regulatory c... 119 2e-26
sp|P96175|PYRI_VIBS2 ASPARTATE CARBAMOYLTRANSFERASE REGULATORY C... 114 5e-25
emb|CAA71345.1| (Y10300) aspartate carbamoyltransferase with fus... 85 4e-16
sp|P96111|PYRB_THEMA PYRBI PROTEIN [INCLUDES: ASPARTATE CARBAMOY... 85 4e-16
>sp|P77919|PYRI_PYRAB ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN
>gi|7433579|pir||B75042 aspartate carbamoyltransferase,
regulatory chain (pyri) PAB1499 - Pyrococcus abyssi
(strain Orsay) >gi|1572498|gb|AAB62985.1| (U61765)
aspartate transcarbamylase regulatory chain [Pyrococcus
abyssi] >gi|5458744|emb|CAB50231.1| (AJ248287) aspartate
carbamoyltransferase, regulatory subunit (pyrI)
[Pyrococcus abyssi]
Length = 152
Score = 305 bits (772), Expect = 2e-82
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MAELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKV 60
MAELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKV
Sbjct: 1 MAELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKV 60
Query: 61 EGRFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYV 120
EGRFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYV
Sbjct: 61 EGRFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYV 120
Query: 121 TTKFYVISREPLKVRCHYCERTMEEEEILANL 152
TTKFYVISREPLKVRCHYCERTMEEEEILANL
Sbjct: 121 TTKFYVISREPLKVRCHYCERTMEEEEILANL 152
>sp|O58452|PYRI_PYRHO ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN
>gi|7433576|pir||B71119 probable aspartate
carbamoyltransferase regulatory chain - Pyrococcus
horikoshii >gi|3257129|dbj|BAA29812.1| (AP000003) 152aa
long hypothetical aspartate carbamoyltransferase
regulatory chain [Pyrococcus horikoshii]
Length = 152
Score = 281 bits (712), Expect = 2e-75
Identities = 139/152 (91%), Positives = 147/152 (96%)
Query: 1 MAELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKV 60
M ELKVSAIKEGTVIDHIPAGKGLKVIEIL L KL+NGG+VLLAMNVPSKKLGRKDIVKV
Sbjct: 1 MPELKVSAIKEGTVIDHIPAGKGLKVIEILGLSKLSNGGSVLLAMNVPSKKLGRKDIVKV 60
Query: 61 EGRFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYV 120
EG+FLSEEEVNKIALVAP ATVNIIR+YKVVEKFKVEVP+VIEGIL+CGNPNCITN+EYV
Sbjct: 61 EGKFLSEEEVNKIALVAPTATVNIIRNYKVVEKFKVEVPEVIEGILKCGNPNCITNYEYV 120
Query: 121 TTKFYVISREPLKVRCHYCERTMEEEEILANL 152
TTKFYVIS+ PLKVRCHYCERTMEEEEILANL
Sbjct: 121 TTKFYVISKNPLKVRCHYCERTMEEEEILANL 152
>sp|Q58801|PYRI_METJA ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN
>gi|2127772|pir||E64475 aspartate carbamoyltransferase
(EC 2.1.3.2) regulatory chain - Methanococcus jannaschii
>gi|1592055|gb|AAB99414.1| (U67581) aspartate
carbamoyltransferase regulatory chain (pyrI)
[Methanococcus jannaschii]
Length = 149
Score = 169 bits (423), Expect = 2e-41
Identities = 82/145 (56%), Positives = 110/145 (75%), Gaps = 3/145 (2%)
Query: 1 MAELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKV 60
M ELKV I GTVIDHI AGK L V ++L + K T+ V++A+NVPSKK G+KDI+K+
Sbjct: 4 MEELKVKKITNGTVIDHIDAGKALMVFKVLNVPKETS---VMIAINVPSKKKGKKDILKI 60
Query: 61 EGRFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYV 120
EG L +E+V+KI+L++P+ T+NIIR+ KVVEK K ++PD IEG L+C NPNCITN E V
Sbjct: 61 EGIELKKEDVDKISLISPDVTINIIRNGKVVEKLKPQIPDEIEGTLKCTNPNCITNKEKV 120
Query: 121 TTKFYVISREPLKVRCHYCERTMEE 145
KF + S+ PLK+RC+YCE+ + E
Sbjct: 121 RGKFKIESKNPLKIRCYYCEKFLNE 145
>gi|11497727 aspartate carbamoyltransferase, regulatory subunit (pyrI)
[Archaeoglobus fulgidus]
>gi|6647706|sp|O30129|PYRI_ARCFU ASPARTATE
CARBAMOYLTRANSFERASE REGULATORY CHAIN
>gi|7433578|pir||C69263 aspartate carbamoyltransferase,
regulatory subunit (pyrI) homolog - Archaeoglobus
fulgidus >gi|2650541|gb|AAB91124.1| (AE001099) aspartate
carbamoyltransferase, regulatory subunit (pyrI)
[Archaeoglobus fulgidus]
Length = 153
Score = 165 bits (413), Expect = 3e-40
Identities = 85/147 (57%), Positives = 110/147 (74%), Gaps = 4/147 (2%)
Query: 1 MAELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKV 60
M EL VS IKEGTVIDHI AGK L V++ILK+ T+ V +AMNVPS K+G+KDIVKV
Sbjct: 1 MRELVVSKIKEGTVIDHINAGKALLVLKILKIQPGTDL-TVSMAMNVPSSKMGKKDIVKV 59
Query: 61 EGRFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITN--HE 118
EG F+ +EE+NKIAL++PNAT+N+IRDY++ KFKV P+V+EG+L+C N CI+N E
Sbjct: 60 EGMFIRDEELNKIALISPNATINLIRDYEIERKFKVSPPEVVEGVLKCPNHACISNAERE 119
Query: 119 YVTTKFYVISRE-PLKVRCHYCERTME 144
+T KFY+ + E RCHYC R +E
Sbjct: 120 PITPKFYIKTEEMRATARCHYCGRKIE 146
>sp|O26938|PYRI_METTH ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN
>gi|7433577|pir||E69213 aspartate carbamoyltransferase
regulatory subunit - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621941|gb|AAB85348.1| (AE000861) aspartate
carbamoyltransferase regulatory subunit
[Methanobacterium thermoautotrophicum]
Length = 174
Score = 163 bits (409), Expect = 8e-40
Identities = 84/147 (57%), Positives = 105/147 (71%), Gaps = 3/147 (2%)
Query: 3 ELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEG 62
EL+V IK GTVIDHI A + L V+ IL G V +AMN+ S +LG KDIVK+E
Sbjct: 26 ELRVKPIKNGTVIDHITANRSLNVLNIL--GLPDGRSKVTVAMNMDSSQLGSKDIVKIEN 83
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITN-HEYVT 121
R L EV++IAL+AP AT+NI+RDYK+VEK KV + D + GILRC NPNCITN E V
Sbjct: 84 RELKPSEVDQIALIAPRATINIVRDYKIVEKAKVRLMDEVRGILRCPNPNCITNSDEGVE 143
Query: 122 TKFYVISREPLKVRCHYCERTMEEEEI 148
+FYVIS EP+ +RC+YCER +E +EI
Sbjct: 144 NRFYVISEEPVLLRCYYCERLIEADEI 170
>emb|CAC11714.1| (AL445064) probable aspartate carbamoyltransferase, regulatory
chain [Thermoplasma acidophilum]
Length = 151
Score = 160 bits (400), Expect = 9e-39
Identities = 74/146 (50%), Positives = 114/146 (77%), Gaps = 2/146 (1%)
Query: 4 LKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEGR 63
L++S I++GTVIDH+P+GKG++VI +L + + N V LA++VPS K+G KD++K+E R
Sbjct: 5 LRISKIRDGTVIDHVPSGKGIRVIGVLGVHEDVNY-TVSLAIHVPSNKMGFKDVIKIENR 63
Query: 64 FLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITN-HEYVTT 122
FL E++ I+L+APNAT++II++Y++ EKF+VE+P + G+L+C N NCITN E V +
Sbjct: 64 FLDRNELDMISLIAPNATISIIKNYEISEKFQVELPSRLIGVLKCKNQNCITNTREPVES 123
Query: 123 KFYVISREPLKVRCHYCERTMEEEEI 148
+F ++S+ PL +RC YCERTM E++I
Sbjct: 124 EFEIVSKHPLVIRCVYCERTMGEKDI 149
>sp|P74766|PYRI_SULAC ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN
>gi|1563754|emb|CAA69618.1| (Y08309) pyrI [Sulfolobus
acidocaldarius]
Length = 164
Score = 156 bits (390), Expect = 1e-37
Identities = 75/151 (49%), Positives = 109/151 (71%), Gaps = 2/151 (1%)
Query: 3 ELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEG 62
EL VS IK GTVIDHIPAG+ V+ +L + K G + L +NV SKK+G+KDIVK+E
Sbjct: 9 ELMVSKIKNGTVIDHIPAGRAFAVLNVLGI-KGHEGFRIALVINVDSKKMGKKDIVKIED 67
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEY-VT 121
+ +S+ E N I L+AP AT+NI+R+Y+VV+K K+EVP V++GIL+C NP CIT+++
Sbjct: 68 KEISDTEANLITLIAPTATINIVREYEVVKKTKLEVPKVVKGILKCPNPYCITSNDVEAI 127
Query: 122 TKFYVISREPLKVRCHYCERTMEEEEILANL 152
F ++ +PLK+RC YCE ++E EI++ +
Sbjct: 128 PTFKTLTEKPLKMRCEYCETIIDENEIMSQI 158
>gb|AAK40924.1| Aspartate carbamoyltransferase regulatory chain (pyrI) [Sulfolobus
solfataricus]
Length = 163
Score = 155 bits (388), Expect = 2e-37
Identities = 77/151 (50%), Positives = 108/151 (70%), Gaps = 2/151 (1%)
Query: 3 ELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEG 62
EL VS I+ GTVIDHIPAG+ L V+ IL + + + G V L MNV SKK+GRKDIVK+E
Sbjct: 13 ELIVSKIRNGTVIDHIPAGRALAVLRILGI-RGSEGYRVALVMNVESKKIGRKDIVKIED 71
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEY-VT 121
R + E+E + I L+AP+AT+NIIRDY V EK +EVP I G+++C NP CITN++
Sbjct: 72 RVIDEKEASLITLIAPSATINIIRDYVVTEKRHLEVPKQIRGLIKCPNPQCITNNDVEAE 131
Query: 122 TKFYVISREPLKVRCHYCERTMEEEEILANL 152
++F IS +PLK++C YCE + E++++ +
Sbjct: 132 SRFITISIKPLKLKCKYCEMYITEDDVIRQI 162
>sp|Q9UX07|PYRI_SULSO ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN
>gi|6015860|emb|CAB57687.1| (Y18930) aspartate
carbamoyltransferase regulatory chain [Sulfolobus
solfataricus]
Length = 163
Score = 155 bits (388), Expect = 2e-37
Identities = 77/151 (50%), Positives = 108/151 (70%), Gaps = 2/151 (1%)
Query: 3 ELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEG 62
EL VS I+ GTVIDHIPAG+ L V+ IL + + + G V L MNV SKK+GRKDIVK+E
Sbjct: 13 ELIVSKIRNGTVIDHIPAGRALAVLRILGI-RGSEGYRVALVMNVESKKIGRKDIVKIED 71
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEY-VT 121
R + E+E + I L+AP+AT+NIIRDY V EK +EVP I G+++C NP CITN++
Sbjct: 72 RVIDEKEASLITLIAPSATINIIRDYVVTEKRHLEVPKQIRGLIKCPNPQCITNNDVEAE 131
Query: 122 TKFYVISREPLKVRCHYCERTMEEEEILANL 152
++F IS +PLK++C YCE + E++++ +
Sbjct: 132 SRFITISIKPLKLKCKYCEMYITEDDVIRQI 162
>gb|AAG20943.1| (AE005160) aspartate carbamoyltransferase regulatory chain; PyrI
[Halobacterium sp. NRC-1]
Length = 159
Score = 140 bits (349), Expect = 8e-33
Identities = 75/147 (51%), Positives = 107/147 (72%), Gaps = 11/147 (7%)
Query: 4 LKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGA---VLLAMNVPSKKLGRKDIVKV 60
L+VS I+ GTVIDHIPAG+ L+V++IL TNG + + + MNV S++ RKDIVK+
Sbjct: 12 LQVSKIQAGTVIDHIPAGQALQVLQILG----TNGASDDQITVGMNVTSERHHRKDIVKI 67
Query: 61 EGRFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCIT-NHEY 119
EGR LS++EV+ ++L+AP+AT+NI+RDY+V EK +V+ PDV+ G+L C NPNCIT N E
Sbjct: 68 EGRELSQDEVDVLSLIAPDATINIVRDYEVDEKRRVDRPDVVAGVLSCPNPNCITANDEP 127
Query: 120 VTTKFYVISREPLKVRCHYCERTMEEE 146
V + F V+ +RC YCE+ + E+
Sbjct: 128 VRSGFDVLDD---GMRCQYCEQIVSED 151
>sp|P19936|PYRI_SERMA ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN
>gi|279482|pir||DTSECM aspartate carbamoyltransferase
(EC 2.1.3.2) regulatory chain - Serratia marcescens
>gi|398076|gb|AAA26565.1| (J05033) aspartate
transcarbamoylase [Serratia marcescens]
Length = 154
Score = 133 bits (331), Expect = 1e-30
Identities = 66/148 (44%), Positives = 99/148 (66%), Gaps = 3/148 (2%)
Query: 3 ELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEG 62
+L+V AIK GTVIDHIPA G K++ + KL + + +N+PS +LGRKD++K+E
Sbjct: 6 KLQVEAIKCGTVIDHIPAQIGFKLLTLFKL--TATDQRITIGLNLPSNELGRKDLIKIEN 63
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYVTT 122
FL+E++ N++A+ AP ATVN I +Y+VV K + +PD I+G+L C N NCI+ E V +
Sbjct: 64 TFLTEQQANQLAMYAPKATVNRIDNYEVVRKLTLSLPDHIDGVLTCPNGNCISRSEPVRS 123
Query: 123 KFYVISR-EPLKVRCHYCERTMEEEEIL 149
F V SR + ++C YCE+ E + +L
Sbjct: 124 SFSVKSRGGEVHLKCRYCEKEFEHQVVL 151
>sp|P00478|PYRI_ECOLI ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN
>gi|66487|pir||DTECR aspartate carbamoyltransferase (EC
2.1.3.2) regulatory chain - Escherichia coli
>gi|11513488|pdb|1EZZ|B Chain B, Crystal Structure Of E.
Coli Aspartate Transcarbamoylase P268a Mutant In The
T-State >gi|11513490|pdb|1EZZ|D Chain D, Crystal
Structure Of E. Coli Aspartate Transcarbamoylase P268a
Mutant In The T-State >gi|11513495|pdb|1F1B|B Chain B,
Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-State In The Presence Of N-
Phosphonacetyl-L-Aspartate >gi|11513497|pdb|1F1B|D Chain
D, Crystal Structure Of E. Coli Aspartate
Transcarbamoylase P268a Mutant In The R-State In The
Presence Of N- Phosphonacetyl-L-Aspartate
>gi|6980787|pdb|1D09|B Chain B, Aspartate
Transcarbamoylase Complexed With N-Phosphonacetyl-
L-Aspartate (Pala) >gi|6980789|pdb|1D09|D Chain D,
Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl- L-Aspartate (Pala)
>gi|147465|gb|AAA24477.1| (K01472) aspartate
transcarbamoylase regulatory chain (pyrI) [Escherichia
coli] >gi|537086|gb|AAA97141.1| (U14003) aspartate
carbomoyltransferase regulatory subunit [Escherichia
coli] >gi|1790692|gb|AAC77201.1| (AE000495) aspartate
carbamoyltransferase, regulatory subunit [Escherichia
coli K12]
Length = 153
Score = 131 bits (325), Expect = 6e-30
Identities = 65/150 (43%), Positives = 101/150 (67%), Gaps = 3/150 (2%)
Query: 3 ELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEG 62
+L+V AIK GTVIDHIPA G K++ + KL + + + +N+PS ++GRKD++K+E
Sbjct: 6 KLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQ--RITIGLNLPSGEMGRKDLIKIEN 63
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYVTT 122
FLSE++V+++AL AP ATVN I +Y+VV K + +P+ I+ +L C N NCI++ E V++
Sbjct: 64 TFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSS 123
Query: 123 KFYVISR-EPLKVRCHYCERTMEEEEILAN 151
F V R + ++C YCE+ +LAN
Sbjct: 124 SFAVRKRANDIALKCKYCEKEFSHNVVLAN 153
>pdb|5AT1|B Chain B, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Cytidine 5-Prime-Triphosphate (CTP)
>gi|576419|pdb|5AT1|D Chain D, Aspartate
Carbamoyltransferase (Aspartate Transcarbamylase) (T
State) (E.C.2.1.3.2) Complex With Cytidine
5-Prime-Triphosphate (CTP) >gi|576424|pdb|8AT1|B Chain
B, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM), Malonate (MAL), And Cytidine
5-Prime-Triphosphate (CTP) >gi|576425|pdb|8AT1|D Chain
D, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM), Malonate (MAL), And Cytidine
5-Prime-Triphosphate (CTP) >gi|809198|pdb|1AT1|B Chain
B, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM) And Malonate (MAL)
>gi|809199|pdb|1AT1|D Chain D, Aspartate
Carbamoyltransferase (Aspartate Transcarbamylase) (R
State) (E.C.2.1.3.2) Complex With Phosphonoacetamide
(PAM) And Malonate (MAL) >gi|229665|pdb|1ACM|B Chain B,
Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) Mutant With Arg A 54 (Catalytic Chain)
Replaced By Ala And Arg C 54 (Catalytic Chain) Replaced
By Ala (R(A)54A,R(C)54A) (R State) (E.C.2.1.3.2) Complex
With N-Phosphonacetyl-L-Asparta> >gi|229667|pdb|1ACM|D
Chain D, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) Mutant With Arg A 54 (Catalytic Chain)
Replaced By Ala And Arg C 54 (Catalytic Chain) Replaced
By Ala (R(A)54A,R(C)54A) (R State) (E.C.2.1.3.2) Complex
With N-Phosphonacetyl-L-Asparta>
Length = 153
Score = 129 bits (322), Expect = 1e-29
Identities = 65/150 (43%), Positives = 100/150 (66%), Gaps = 3/150 (2%)
Query: 3 ELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEG 62
+L V AIK GTVIDHIPA G K++ + KL + + + +N+PS ++GRKD++K+E
Sbjct: 6 KLGVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQ--RITIGLNLPSGEMGRKDLIKIEN 63
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYVTT 122
FLSE++V+++AL AP ATVN I +Y+VV K + +P+ I+ +L C N NCI++ E V++
Sbjct: 64 TFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSS 123
Query: 123 KFYVISR-EPLKVRCHYCERTMEEEEILAN 151
F V R + ++C YCE+ +LAN
Sbjct: 124 SFAVRKRANDIALKCKYCEKEFSHNVVLAN 153
>pir||D82010 aspartate carbamoyltransferase regulatory chain NMA0167 [imported]
- Neisseria meningitidis (group A strain Z2491)
>gi|7378938|emb|CAB83481.1| (AL162752) aspartate
carbamoyltransferase regulatory chain [Neisseria
meningitidis Z2491]
Length = 152
Score = 129 bits (321), Expect = 2e-29
Identities = 64/147 (43%), Positives = 95/147 (64%), Gaps = 3/147 (2%)
Query: 3 ELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEG 62
+L V AI++GTVIDHIPAG+GL ++ KL L G AV + N+PSK G KDI+K++G
Sbjct: 5 KLSVEAIEKGTVIDHIPAGRGLTILRQFKL--LHYGNAVTVGFNLPSKTQGSKDIIKIKG 62
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYVTT 122
L ++ +++AL AP A VN I +KVV+K + +PD I + RC N NC ++ E V +
Sbjct: 63 VCLDDKAADRLALFAPEAVVNTIDHFKVVQKRHLNLPDEIAEVFRCPNTNCASHGEPVKS 122
Query: 123 KFYVISRE-PLKVRCHYCERTMEEEEI 148
+FYV +++CHYCE+T + +
Sbjct: 123 RFYVKKHNGQTRLKCHYCEKTYSRDSV 149
>sp|P57451|PYRI_BUCAI ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN
>gi|10039040|dbj|BAB13074.1| (AP001119) aspartate
carbamoyltransferase regulatory chain [Buchnera sp. APS]
Length = 154
Score = 129 bits (321), Expect = 2e-29
Identities = 60/150 (40%), Positives = 99/150 (66%), Gaps = 4/150 (2%)
Query: 3 ELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEG 62
+L+V AIK G+VIDHIP G K++ + + + + + +N+PSKKLGRKDI+K+E
Sbjct: 5 KLQVEAIKSGSVIDHIPEYIGFKLLSLFRFTETEK--RITIGLNLPSKKLGRKDIIKIEN 62
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYVTT 122
FLS+E++N++A+ AP+ATVN I +Y +V K +P+ I+ IL C N NC+TNH + +
Sbjct: 63 TFLSDEQINQLAIYAPHATVNYINEYNLVRKVFPTLPETIDRILICPNSNCVTNHHLINS 122
Query: 123 KFYVISRE--PLKVRCHYCERTMEEEEILA 150
F + + + ++C YCE+ ++ +L+
Sbjct: 123 SFILKEDQFFNMNLKCKYCEKEFYKKIVLS 152
>sp|P08421|PYRI_SALTY ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN
>gi|279481|pir||DTEBCT aspartate carbamoyltransferase
(EC 2.1.3.2) regulatory chain - Salmonella typhimurium
>gi|47864|emb|CAA29130.1| (X05641) pyrI (AA 1-153)
[Salmonella typhimurium]
Length = 153
Score = 129 bits (321), Expect = 2e-29
Identities = 66/150 (44%), Positives = 99/150 (66%), Gaps = 3/150 (2%)
Query: 3 ELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEG 62
+L+V AIK GTVIDHIPA G K++ + KL + + + +N+PS ++GRKD++K+E
Sbjct: 6 KLQVEAIKCGTVIDHIPAQVGFKLLSLFKLTETDQ--RITIGLNLPSGEMGRKDLIKIEN 63
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYVTT 122
FL+EE+VN++AL AP ATVN I +Y VV K + +P+ I +L C N NCI++ E V++
Sbjct: 64 TFLTEEQVNQLALYAPQATVNRIDNYDVVGKSRPSLPERINNVLVCPNSNCISHAEPVSS 123
Query: 123 KFYVISR-EPLKVRCHYCERTMEEEEILAN 151
F V R + ++C YCE+ +LAN
Sbjct: 124 SFAVKKRANDIALKCKYCEKEFSHYVVLAN 153
>pdb|1NBE|B Chain B, Aspartate Transcarbomylase Regulatory Chain Mutant (T82a)
>gi|3891870|pdb|1NBE|D Chain D, Aspartate
Transcarbomylase Regulatory Chain Mutant (T82a)
Length = 153
Score = 129 bits (320), Expect = 2e-29
Identities = 64/150 (42%), Positives = 100/150 (66%), Gaps = 3/150 (2%)
Query: 3 ELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEG 62
+L+V AIK GTVIDHIPA G K++ + KL + + + +N+PS ++GRKD++K+E
Sbjct: 6 KLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQ--RITIGLNLPSGEMGRKDLIKIEN 63
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYVTT 122
FLSE++V+++AL AP A VN I +Y+VV K + +P+ I+ +L C N NCI++ E V++
Sbjct: 64 TFLSEDQVDQLALYAPQAAVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSS 123
Query: 123 KFYVISR-EPLKVRCHYCERTMEEEEILAN 151
F V R + ++C YCE+ +LAN
Sbjct: 124 SFAVRKRANDIALKCKYCEKEFSHNVVLAN 153
>pdb|9ATC|B Chain B, Atcase Y165f Mutant
Length = 146
Score = 129 bits (320), Expect = 2e-29
Identities = 64/148 (43%), Positives = 99/148 (66%), Gaps = 3/148 (2%)
Query: 5 KVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEGRF 64
+V AIK GTVIDHIPA G K++ + KL + + + +N+PS ++GRKD++K+E F
Sbjct: 1 QVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQ--RITIGLNLPSGEMGRKDLIKIENTF 58
Query: 65 LSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYVTTKF 124
LSE++V+++AL AP ATVN I +Y+VV K + +P+ I+ +L C N NCI++ E V++ F
Sbjct: 59 LSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSSSF 118
Query: 125 YVISR-EPLKVRCHYCERTMEEEEILAN 151
V R + ++C YCE+ +LAN
Sbjct: 119 AVRKRANDIALKCKYCEKEFSHNVVLAN 146
>pir||B81238 aspartate carbamoyltransferase, regulatory chain NMB0107 [imported]
- Neisseria meningitidis (group B strain MD58)
>gi|7225322|gb|AAF40566.1| (AE002369) aspartate
carbamoyltransferase, regulatory subunit [Neisseria
meningitidis MC58]
Length = 152
Score = 129 bits (320), Expect = 2e-29
Identities = 64/147 (43%), Positives = 95/147 (64%), Gaps = 3/147 (2%)
Query: 3 ELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEG 62
+L V AI++GTVIDHIPAG+GL ++ KL L G AV + N+PSK G KDI+K++G
Sbjct: 5 KLSVEAIEKGTVIDHIPAGRGLTILRQFKL--LHYGNAVTVGFNLPSKTQGSKDIIKIKG 62
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYVTT 122
L ++ +++AL AP A VN I ++KVV+K + +PD I + RC N NC + E V +
Sbjct: 63 VCLDDKAADRLALFAPEAVVNTIDNFKVVQKRHLNLPDEIAEVFRCPNTNCAGHGEPVKS 122
Query: 123 KFYVISRE-PLKVRCHYCERTMEEEEI 148
+FYV +++CHYCE+T + +
Sbjct: 123 RFYVKKHNGQTRLKCHYCEKTYSRDSV 149
>pdb|8ATC|B Chain B, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
N-Phosphonacetyl-L-Aspartate (PALA)
>gi|231289|pdb|8ATC|D Chain D, Aspartate
Carbamoyltransferase (Aspartate Transcarbamylase) (R
State) (E.C.2.1.3.2) Complex With
N-Phosphonacetyl-L-Aspartate (PALA)
>gi|230954|pdb|4AT1|B Chain B, Aspartate
Carbamoyltransferase (Aspartate Transcarbamylase) (T
State) (E.C.2.1.3.2) Complex With Adenosine
5-Prime-Triphosphate (ATP) >gi|230956|pdb|4AT1|D Chain
D, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Adenosine 5-Prime-Triphosphate (ATP)
>gi|231194|pdb|6AT1|B Chain B, Aspartate
Carbamoyltransferase (Aspartate Transcarbamylase) (T
State) (E.C.2.1.3.2) >gi|231196|pdb|6AT1|D Chain D,
Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2)
>gi|231244|pdb|7AT1|B Chain B, Aspartate
Carbamoyltransferase (Aspartate Transcarbamylase) (R
State) (E.C.2.1.3.2) Complex With Phosphonoacetamide
(PAM), Malonate (MAL), And Adenosine
5-Prime-Triphosphate (ATP) >gi|231246|pdb|7AT1|D Chain
D, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM), Malonate (MAL), And Adenosine
5-Prime-Triphosphate (ATP) >gi|230426|pdb|2AT1|B Chain
B, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM) And Malonate (MAL)
>gi|230428|pdb|2AT1|D Chain D, Aspartate
Carbamoyltransferase (Aspartate Transcarbamylase) (R
State) (E.C.2.1.3.2) Complex With Phosphonoacetamide
(PAM) And Malonate (MAL) >gi|230809|pdb|3AT1|B Chain B,
Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide >gi|230811|pdb|3AT1|D Chain D,
Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide
Length = 146
Score = 128 bits (319), Expect = 3e-29
Identities = 64/147 (43%), Positives = 98/147 (66%), Gaps = 3/147 (2%)
Query: 6 VSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEGRFL 65
V AIK GTVIDHIPA G K++ + KL + + + +N+PS ++GRKD++K+E FL
Sbjct: 2 VEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQ--RITIGLNLPSGEMGRKDLIKIENTFL 59
Query: 66 SEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYVTTKFY 125
SE++V+++AL AP ATVN I +Y+VV K + +P+ I+ +L C N NCI++ E V++ F
Sbjct: 60 SEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSSSFA 119
Query: 126 VISR-EPLKVRCHYCERTMEEEEILAN 151
V R + ++C YCE+ +LAN
Sbjct: 120 VRKRANDIALKCKYCEKEFSHNVVLAN 146
>gb|AAF01339.1|AF190426_3 (AF190426) aspartate transcarbamylase regulatory subunit [Erwinia
herbicola]
Length = 154
Score = 127 bits (317), Expect = 5e-29
Identities = 62/150 (41%), Positives = 99/150 (65%), Gaps = 3/150 (2%)
Query: 3 ELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEG 62
+L+V AIK GTVIDHIPA G K++ + +L + + + +N+PS ++GRKD++K+E
Sbjct: 6 KLQVEAIKRGTVIDHIPAQIGFKLLSLFRLTETDQ--RITIGLNLPSGEMGRKDLIKIEN 63
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYVTT 122
FL++++VN++A+ AP+ATVN I DY+VV K +PD +E +L C N NCI+ E V +
Sbjct: 64 TFLTDDQVNQLAVYAPHATVNRIDDYEVVAKIAPTLPDHVERVLTCPNSNCISRSEPVFS 123
Query: 123 KFYVISR-EPLKVRCHYCERTMEEEEILAN 151
F V R + + ++C YCE+ +L +
Sbjct: 124 SFAVKQRADDVHLKCKYCEKEFARHVVLGH 153
>pdb|2ATC|B Chain B, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (E.C.2.1.3.2)
Length = 152
Score = 127 bits (316), Expect = 6e-29
Identities = 62/149 (41%), Positives = 100/149 (66%), Gaps = 2/149 (1%)
Query: 3 ELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEG 62
+L+V+ IK GTVI+HIPA G K++ + KL + + + + +N+PS ++GRKD++K+E
Sbjct: 6 KLQVAEIKRGTVINHIPAEIGFKLLSLFKLTETQD--RITIGLNLPSGEMGRKDLIKIEN 63
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYVTT 122
FLSE+EV+++AL AP ATVN I DY+VV K + +P+ +L C + NCI++ E V++
Sbjct: 64 TFLSEDEVDELALYAPQATVNRINDYEVVGKSRPSLPERNIDVLVCPDSNCISHAEPVSS 123
Query: 123 KFYVISREPLKVRCHYCERTMEEEEILAN 151
F V + + ++C YCE+ +LAN
Sbjct: 124 SFAVRRADDIALKCKYCEKEFSHNVVLAN 152
>prf||681084A transcarbamylase R,Asp [Escherichia coli]
Length = 152
Score = 126 bits (314), Expect = 1e-28
Identities = 61/149 (40%), Positives = 100/149 (66%), Gaps = 2/149 (1%)
Query: 3 ELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEG 62
+L+V+ IK GTVI+HIPA G K++ + KL + + + + +N+PS ++GRKD++K+E
Sbjct: 6 KLQVAEIKRGTVINHIPAEIGFKLLSLFKLTETQD--RITIGLNLPSGEMGRKDLIKIEN 63
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYVTT 122
FLSE+ZV+++AL AP ATVN I DY+VV K + +P+ +L C + NCI++ E V++
Sbjct: 64 TFLSEBZVBZLALYAPQATVNRINDYEVVGKSRPSLPERNIDVLVCPDSNCISHAEPVSS 123
Query: 123 KFYVISREPLKVRCHYCERTMEEEEILAN 151
F V + + ++C YCE+ +LAN
Sbjct: 124 SFAVRRABBIALKCKYCEKEFSHNVVLAN 152
>pdb|1RAA|B Chain B, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 250 Steps Of Equilibration
Of Preliminary Refined Model) >gi|494501|pdb|1RAA|D
Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2)
(Aspartate Carbamoyltransferase) (T State) Complexed
With Ctp (Fast Cooling Sa Refinement After 250 Steps Of
Equilibration Of Preliminary Refined Model)
>gi|494503|pdb|1RAB|B Chain B, Aspartate
Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 250 Steps Of Equilibration
Of Preliminary Refined Model) >gi|494505|pdb|1RAB|D
Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2)
(Aspartate Carbamoyltransferase) (T State) Complexed
With Ctp (Slow Cooling Sa Refinement After 250 Steps Of
Equilibration Of Preliminary Refined Model)
>gi|494507|pdb|1RAC|B Chain B, Aspartate
Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 500 Steps Of Equilibration
Of Preliminary Refined Model) >gi|494509|pdb|1RAC|D
Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2)
(Aspartate Carbamoyltransferase) (T State) Complexed
With Ctp (Fast Cooling Sa Refinement After 500 Steps Of
Equilibration Of Preliminary Refined Model)
>gi|494511|pdb|1RAD|B Chain B, Aspartate
Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 500 Steps Of Equilibration
Of Preliminary Refined Model) >gi|494513|pdb|1RAD|D
Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2)
(Aspartate Carbamoyltransferase) (T State) Complexed
With Ctp (Slow Cooling Sa Refinement After 500 Steps Of
Equilibration Of Preliminary Refined Model)
>gi|494515|pdb|1RAE|B Chain B, Aspartate
Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 750 Steps Of Equilibration
Of Preliminary Refined Model) >gi|494517|pdb|1RAE|D
Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2)
(Aspartate Carbamoyltransferase) (T State) Complexed
With Ctp (Fast Cooling Sa Refinement After 750 Steps Of
Equilibration Of Preliminary Refined Model)
>gi|494519|pdb|1RAF|B Chain B, Aspartate
Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 750 Steps Of Equilibration
Of Preliminary Refined Model) >gi|494521|pdb|1RAF|D
Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2)
(Aspartate Carbamoyltransferase) (T State) Complexed
With Ctp (Slow Cooling Sa Refinement After 750 Steps Of
Equilibration Of Preliminary Refined Model)
>gi|494523|pdb|1RAG|B Chain B, Aspartate
Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 1000 Steps Of Equilibration
Of Preliminary Refined Model) >gi|494525|pdb|1RAG|D
Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2)
(Aspartate Carbamoyltransferase) (T State) Complexed
With Ctp (Fast Cooling Sa Refinement After 1000 Steps Of
Equilibration Of Preliminary Refined Model)
>gi|494527|pdb|1RAH|B Chain B, Aspartate
Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 1000 Steps Of Equilibration
Of Preliminary Refined Model) >gi|494529|pdb|1RAH|D
Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2)
(Aspartate Carbamoyltransferase) (T State) Complexed
With Ctp (Slow Cooling Sa Refinement After 1000 Steps Of
Equilibration Of Preliminary Refined Model)
>gi|494531|pdb|1RAI|B Chain B, Aspartate
Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp
(Refinement 9: Final Refined Structure)
Length = 154
Score = 126 bits (314), Expect = 1e-28
Identities = 65/151 (43%), Positives = 101/151 (66%), Gaps = 4/151 (2%)
Query: 3 ELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEG 62
+L+V AIK GTVIDHIPA G K++ + KL + + + +N+PS ++GRKD++K+E
Sbjct: 6 KLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQ--RITIGLNLPSGEMGRKDLIKIEN 63
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCG-NPNCITNHEYVT 121
FLSE++V+++AL AP ATVN I +Y+VV K + +P+ I+ +L C N NCI++ E V+
Sbjct: 64 TFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCXPNSNCISHAEPVS 123
Query: 122 TKFYVISR-EPLKVRCHYCERTMEEEEILAN 151
+ F V R + ++C YCE+ +LAN
Sbjct: 124 SSFAVRKRANDIALKCKYCEKEFSHNVVLAN 154
>pir||A82067 aspartate carbamoyltransferase, regulatory chain VC2511 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9657094|gb|AAF95653.1| (AE004321) aspartate
carbamoyltransferase, regulatory subunit [Vibrio
cholerae]
Length = 155
Score = 125 bits (310), Expect = 3e-28
Identities = 59/147 (40%), Positives = 98/147 (66%), Gaps = 3/147 (2%)
Query: 3 ELKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEG 62
+L+V AIK GTVIDHIPA G+KV+++ + + V + +N+PS LG KD++K+E
Sbjct: 6 KLQVEAIKNGTVIDHIPAKVGIKVLKLFDMHN--SAQRVTIGLNLPSSALGSKDLLKIEN 63
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYVTT 122
F+SE + NK+AL AP+ATVN I +Y+VV+K +++P+ I + C N NCI+++E V +
Sbjct: 64 VFISEAQANKLALYAPHATVNQIENYEVVKKLALQLPERINNVFACPNSNCISHNEPVES 123
Query: 123 KFYVISR-EPLKVRCHYCERTMEEEEI 148
F + + ++++C YCE+ + +
Sbjct: 124 SFKLSEKNNDIRLKCKYCEKVFARDVV 150
>pdb|1RAI|D Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp
(Refinement 9: Final Refined Structure)
Length = 147
Score = 124 bits (309), Expect = 4e-28
Identities = 64/149 (42%), Positives = 99/149 (65%), Gaps = 4/149 (2%)
Query: 5 KVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEGRF 64
+V AIK GTVIDHIPA G K++ + KL + + + +N+PS ++GRKD++K+E F
Sbjct: 1 QVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQ--RITIGLNLPSGEMGRKDLIKIENTF 58
Query: 65 LSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCG-NPNCITNHEYVTTK 123
LSE++V+++AL AP ATVN I +Y+VV K + +P+ I+ +L C N NCI++ E V++
Sbjct: 59 LSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCXPNSNCISHAEPVSSS 118
Query: 124 FYVISR-EPLKVRCHYCERTMEEEEILAN 151
F V R + ++C YCE+ +LAN
Sbjct: 119 FAVRKRANDIALKCKYCEKEFSHNVVLAN 147
>pir||B72547 probable aspartate carbamoyltransferase regulatory chain APE1662 -
Aeropyrum pernix (strain K1) >gi|5105350|dbj|BAA80663.1|
(AP000062) 162aa long hypothetical aspartate
carbamoyltransferase regulatory chain [Aeropyrum pernix]
Length = 162
Score = 119 bits (295), Expect = 2e-26
Identities = 62/150 (41%), Positives = 92/150 (61%), Gaps = 7/150 (4%)
Query: 4 LKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGG---AVLLAMNVPSKKLGRKDIVKV 60
L V I+ G VIDHIP G+ +++ L G L G + + +N S KLGRKDI+K+
Sbjct: 9 LLVRKIRSGVVIDHIPPGRAFTMLKAL--GLLPPRGYRWRIAVVINAESSKLGRKDILKI 66
Query: 61 EGRFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCIT--NHE 118
EG + ++ + ++AP AT N+I DYKVVEK K+++P+ +G+LRC NP CIT E
Sbjct: 67 EGYKPRQRDLEVLGIIAPGATFNVIEDYKVVEKVKLKLPEESQGVLRCPNPTCITRKERE 126
Query: 119 YVTTKFYVISREPLKVRCHYCERTMEEEEI 148
+K ++S++P RC YC T+ +EI
Sbjct: 127 KAVSKMVLVSQDPPAYRCVYCGTTVMGDEI 156
>sp|P96175|PYRI_VIBS2 ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN
>gi|11257054|pir||T48883 aspartate carbamoyltransferase
(EC 2.1.3.2) regulatory chain [validated] - Vibrio sp
>gi|1708788|emb|CAA70924.1| (Y09786) aspartate
carbamoyltransferase (ATCase) regulatory chain (r)
[Vibrio sp.]
Length = 153
Score = 114 bits (283), Expect = 5e-25
Identities = 56/150 (37%), Positives = 94/150 (62%), Gaps = 3/150 (2%)
Query: 4 LKVSAIKEGTVIDHIPAGKGLKVIEILKLGKLTNGGAVLLAMNVPSKKLGRKDIVKVEGR 63
++V AI G VIDHIP+G+G+K++ + L V + N+PS KD++KVE
Sbjct: 6 MQVEAICNGYVIDHIPSGQGVKILRLFSLTDTKQ--RVTVGFNLPSHDGTTKDLIKVENT 63
Query: 64 FLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGILRCGNPNCITNHEYVTTK 123
+++ + N++AL+APNATVNII ++KV +K + +P +E + C N NCIT+ E V +
Sbjct: 64 EITKSQANQLALLAPNATVNIIENFKVTDKHSLALPKEVENVFPCPNSNCITHGEPVISS 123
Query: 124 FYV-ISREPLKVRCHYCERTMEEEEILANL 152
F + + + + ++C YCE+T +E + A +
Sbjct: 124 FTIKMIKGNIGLKCKYCEKTFSKEIVTAQV 153
>emb|CAA71345.1| (Y10300) aspartate carbamoyltransferase with fused catalytic and
regulatory chains [Thermotoga maritima]
Length = 525
Score = 85.0 bits (207), Expect = 4e-16
Identities = 57/151 (37%), Positives = 83/151 (54%), Gaps = 10/151 (6%)
Query: 6 VSAIKEGTVIDHIPAGKGLKVI--EILKLGKLTNGGAVLLAMNVPSKKLGR-KDIVKVEG 62
+ I+ GTVIDHI GK + I ILK+ K+ V A + G K + +
Sbjct: 376 IKPIENGTVIDHIAKGKTPEEIYSTILKIRKILRLYDVDSADGIFRSSDGSFKGYISLPD 435
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGI--LRCGNPNCITN---H 117
R+LS++E+ K++ ++PN TVNII++ VVEK+++++P I G LRC N NCITN
Sbjct: 436 RYLSKKEIKKLSAISPNTTVNIIKNSTVVEKYRIKLPPTIYGFEELRCKNENCITNPAHG 495
Query: 118 EYVTTKFYVISREPLKVRCHYCERTMEEEEI 148
E + F + E + C YCE EEI
Sbjct: 496 ENASPSF--VRNEKGQFICEYCETPHSFEEI 524
>sp|P96111|PYRB_THEMA PYRBI PROTEIN [INCLUDES: ASPARTATE CARBAMOYLTRANSFERASE (ASPARTATE
TRANSCARBAMYLASE) (ATCASE); ASPARTATE
CARBAMOYLTRANSFERASE REGULATORY REGION]
>gi|7462060|pir||B72231 aspartate carbamoyltransferase,
catalytic and regulatory chains - Thermotoga maritima
(strain MSB8) >gi|4982215|gb|AAD36709.1|AE001806_19
(AE001806) aspartate carbamoyltransferase, catalytic and
regulatory chains [Thermotoga maritima]
Length = 527
Score = 85.0 bits (207), Expect = 4e-16
Identities = 57/151 (37%), Positives = 83/151 (54%), Gaps = 10/151 (6%)
Query: 6 VSAIKEGTVIDHIPAGKGLKVI--EILKLGKLTNGGAVLLAMNVPSKKLGR-KDIVKVEG 62
+ I+ GTVIDHI GK + I ILK+ K+ V A + G K + +
Sbjct: 376 IKPIENGTVIDHIAKGKTPEEIYSTILKIRKILRLYDVDSADGIFRSSDGSFKGYISLPD 435
Query: 63 RFLSEEEVNKIALVAPNATVNIIRDYKVVEKFKVEVPDVIEGI--LRCGNPNCITN---H 117
R+LS++E+ K++ ++PN TVNII++ VVEK+++++P I G LRC N NCITN
Sbjct: 436 RYLSKKEIKKLSAISPNTTVNIIKNSTVVEKYRIKLPPTIYGFEELRCKNENCITNPAHG 495
Query: 118 EYVTTKFYVISREPLKVRCHYCERTMEEEEI 148
E + F + E + C YCE EEI
Sbjct: 496 ENASPSF--VRNEKGQFICEYCETPHSFEEI 524
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.138 0.389
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54404614
Number of Sequences: 2977
Number of extensions: 2113502
Number of successful extensions: 5123
Number of sequences better than 1.0e-10: 30
Number of HSP's better than 0.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5043
Number of HSP's gapped (non-prelim): 30
length of query: 152
length of database: 189,106,746
effective HSP length: 55
effective length of query: 97
effective length of database: 156,189,961
effective search space: 15150426217
effective search space used: 15150426217
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)