BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1500 1280958 1280590 -123 !not a gene!
         (123 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71119 hypothetical protein PH0723 - Pyrococcus horikoshii ...    87  8e-17

>pir||D71119 hypothetical protein PH0723 - Pyrococcus horikoshii
           >gi|3257131|dbj|BAA29814.1| (AP000003) 119aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 119
           
 Score = 87.0 bits (212), Expect = 8e-17
 Identities = 49/119 (41%), Positives = 60/119 (50%)

Query: 1   MSIVTTGMHLPRNPXXXXXXXXXXXWQSIHISPQSYGFIPRAYLRYNXXXXXXXXXXXXX 60
           M +VTT MHLPRNP            QSIHIS Q   F   + +RY              
Sbjct: 1   MGVVTTSMHLPRNPRLIRNIILLLNRQSIHISSQRDRFTSISNVRYYPSSSSFYLVAPFP 60

Query: 61  QVLFHYLGGSFLLESKLWIHVEVSSPSYNLIFNLLGLFNWIEVHWDHQDFDVFTHLSLF 119
           Q+L +YL   FLL++K W+HV+VSSP Y L+   L     IEVH  HQ   +   LSLF
Sbjct: 61  QMLLNYLRRPFLLKAKFWMHVKVSSPGYYLVLYFLSFLKRIEVHGLHQHLFILEPLSLF 119


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.328    0.143    0.490 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42501776
Number of Sequences: 2977
Number of extensions: 1331297
Number of successful extensions: 2074
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2073
Number of HSP's gapped (non-prelim): 1
length of query: 123
length of database: 189,106,746
effective HSP length: 43
effective length of query: 80
effective length of database: 163,371,805
effective search space: 13069744400
effective search space used: 13069744400
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 161 (67.1 bits)