BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1503 (PAB1503) DE:Hypothetical protein
         (208 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75041 hypothetical protein PAB1503 - Pyrococcus abyssi (st...   413  e-115
pir||H71119 hypothetical protein PH0727 - Pyrococcus horikoshii ...   289  1e-77
gb|AAK42424.1| Conserved hypothetical protein [Sulfolobus solfat...    74  1e-12

>pir||F75041 hypothetical protein PAB1503 - Pyrococcus abyssi (strain Orsay)
           >gi|5458740|emb|CAB50227.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 208
           
 Score =  413 bits (1051), Expect = e-115
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MVSKSIDRIELESPLVALLMPPDPERLGWKVSYYTGIAFHNQTVVVRVSGLRRTIHYYIP 60
           MVSKSIDRIELESPLVALLMPPDPERLGWKVSYYTGIAFHNQTVVVRVSGLRRTIHYYIP
Sbjct: 1   MVSKSIDRIELESPLVALLMPPDPERLGWKVSYYTGIAFHNQTVVVRVSGLRRTIHYYIP 60

Query: 61  ENLKRLTNPLRREVENFLRLVNPEPLSVDQLEEVLSSGRRIADEALSYIKGLHDFVVIES 120
           ENLKRLTNPLRREVENFLRLVNPEPLSVDQLEEVLSSGRRIADEALSYIKGLHDFVVIES
Sbjct: 61  ENLKRLTNPLRREVENFLRLVNPEPLSVDQLEEVLSSGRRIADEALSYIKGLHDFVVIES 120

Query: 121 YSNYAAPTFKSLDVDVVIAVAPGKVALFKGEDYRKATSLYFNMKSPWLITTEDILPLLKP 180
           YSNYAAPTFKSLDVDVVIAVAPGKVALFKGEDYRKATSLYFNMKSPWLITTEDILPLLKP
Sbjct: 121 YSNYAAPTFKSLDVDVVIAVAPGKVALFKGEDYRKATSLYFNMKSPWLITTEDILPLLKP 180

Query: 181 IKIVEFGPKGIEGVFDLVAQVVEASSSL 208
           IKIVEFGPKGIEGVFDLVAQVVEASSSL
Sbjct: 181 IKIVEFGPKGIEGVFDLVAQVVEASSSL 208


>pir||H71119 hypothetical protein PH0727 - Pyrococcus horikoshii
           >gi|3257135|dbj|BAA29818.1| (AP000003) 278aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 278
           
 Score =  289 bits (733), Expect = 1e-77
 Identities = 134/206 (65%), Positives = 169/206 (81%)

Query: 3   SKSIDRIELESPLVALLMPPDPERLGWKVSYYTGIAFHNQTVVVRVSGLRRTIHYYIPEN 62
           +KSIDRIELESP+  LL+PPDPER+GW+VS Y GI+F NQ V+VR+SGL RTIHYYIPEN
Sbjct: 73  AKSIDRIELESPVTVLLLPPDPERVGWRVSSYMGISFQNQVVIVRISGLHRTIHYYIPEN 132

Query: 63  LKRLTNPLRREVENFLRLVNPEPLSVDQLEEVLSSGRRIADEALSYIKGLHDFVVIESYS 122
           L +LT PLR EV   + ++NP+PLSV +L+++LS  R+IADE L Y++  HD +VIESY+
Sbjct: 133 LNKLTKPLRGEVGKLISVLNPKPLSVGKLDDILSESRKIADEVLRYLEHYHDLMVIESYA 192

Query: 123 NYAAPTFKSLDVDVVIAVAPGKVALFKGEDYRKATSLYFNMKSPWLITTEDILPLLKPIK 182
           NYAAPTF SLDVDVV+ VAP K  +F GE Y++A SLYFN+KSPW++TTED+LPLL+P K
Sbjct: 193 NYAAPTFGSLDVDVVVVVAPSKAVIFDGEQYKRAVSLYFNLKSPWIVTTEDVLPLLRPRK 252

Query: 183 IVEFGPKGIEGVFDLVAQVVEASSSL 208
           IVEFGP+G +   + V QVV+ASSSL
Sbjct: 253 IVEFGPEGPKNSLEKVLQVVDASSSL 278


>gb|AAK42424.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 269
           
 Score = 74.1 bits (179), Expect = 1e-12
 Identities = 45/176 (25%), Positives = 87/176 (48%), Gaps = 20/176 (11%)

Query: 13  SPLVALLMPPDPERLGWKVSYYTGIAFHNQTVVVRVSG---------LRRTIHYYIPENL 63
           +P   L +P D E++ + VS Y  I  +    ++R+S          +  +   Y+P+++
Sbjct: 80  NPFAVLFVPIDLEKISYNVSLYNMIMEYGFPYLIRLSDCINGTDQYFVNSSADIYVPKSM 139

Query: 64  KRLTNPLRREVENFLRLVNPEPLSVDQLEEVLSSGRRIADEALSYIKGLHDFVVIESYSN 123
            + T  L  +    L          D++ E++ +  ++ D     +   ++ V+IESY++
Sbjct: 140 LKFTRNLALKFNAKL---------YDKMREIIDASPQLVDNCTIDVFRNYENVIIESYND 190

Query: 124 YAAPTFKSLDVDVVIAVAPGKVALFKGEDYRKATSLYFNMKSPWLITTEDILPLLK 179
            A+PT+ S +VD V  V+P K  L KG++++KA SL+     PW +    ++  LK
Sbjct: 191 SASPTYNSTNVDYVFTVSPTKAFLIKGQEFKKALSLF--SIPPWNVRVSTLMKYLK 244


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.139    0.395 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76140285
Number of Sequences: 2977
Number of extensions: 3037005
Number of successful extensions: 7397
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7395
Number of HSP's gapped (non-prelim): 3
length of query: 208
length of database: 189,106,746
effective HSP length: 55
effective length of query: 153
effective length of database: 156,189,961
effective search space: 23897064033
effective search space used: 23897064033
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)