BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1504 (PAB1504) DE:Hypothetical protein
         (196 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75041 hypothetical protein PAB1504 - Pyrococcus abyssi (st...   389  e-107
pir||C71120 hypothetical protein PH0730 - Pyrococcus horikoshii ...   306  1e-82

>pir||D75041 hypothetical protein PAB1504 - Pyrococcus abyssi (strain Orsay)
           >gi|5458738|emb|CAB50225.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 196
           
 Score =  389 bits (988), Expect = e-107
 Identities = 196/196 (100%), Positives = 196/196 (100%)

Query: 1   MERKRGAYPEYSIEDAIAVIILLKEPLGRKQIAEKLELGEGTVRTLLKKLAKLGMIDSKQ 60
           MERKRGAYPEYSIEDAIAVIILLKEPLGRKQIAEKLELGEGTVRTLLKKLAKLGMIDSKQ
Sbjct: 1   MERKRGAYPEYSIEDAIAVIILLKEPLGRKQIAEKLELGEGTVRTLLKKLAKLGMIDSKQ 60

Query: 61  RGHFLTEKGKRVRENLLELFSEPIGVSVDGYPAIGIVVRKPPSFKSIELRDEAIRFDAKG 120
           RGHFLTEKGKRVRENLLELFSEPIGVSVDGYPAIGIVVRKPPSFKSIELRDEAIRFDAKG
Sbjct: 61  RGHFLTEKGKRVRENLLELFSEPIGVSVDGYPAIGIVVRKPPSFKSIELRDEAIRFDAKG 120

Query: 121 AMILIVKNGEIVFPEDLRPLRDMYPDIARKIVDYDEGDAVVITWADTPPKAFKSAIHVAY 180
           AMILIVKNGEIVFPEDLRPLRDMYPDIARKIVDYDEGDAVVITWADTPPKAFKSAIHVAY
Sbjct: 121 AMILIVKNGEIVFPEDLRPLRDMYPDIARKIVDYDEGDAVVITWADTPPKAFKSAIHVAY 180

Query: 181 VMKKDEIPGEVMEVVR 196
           VMKKDEIPGEVMEVVR
Sbjct: 181 VMKKDEIPGEVMEVVR 196


>pir||C71120 hypothetical protein PH0730 - Pyrococcus horikoshii
           >gi|3257138|dbj|BAA29821.1| (AP000003) 214aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 214
           
 Score =  306 bits (776), Expect = 1e-82
 Identities = 144/194 (74%), Positives = 174/194 (89%)

Query: 3   RKRGAYPEYSIEDAIAVIILLKEPLGRKQIAEKLELGEGTVRTLLKKLAKLGMIDSKQRG 62
           RKRGAYPEY++ED +AVI LLKEPLGRKQI+E+LELGEG+VRTLL+KL+ L +I SKQRG
Sbjct: 21  RKRGAYPEYTVEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQRG 80

Query: 63  HFLTEKGKRVRENLLELFSEPIGVSVDGYPAIGIVVRKPPSFKSIELRDEAIRFDAKGAM 122
           HFLT KGK +R+ LL +FSEPIGVSVDGYP I IVV+ PP FKSIELRDEAI+FDAKGAM
Sbjct: 81  HFLTLKGKEIRDKLLSMFSEPIGVSVDGYPGIAIVVKNPPEFKSIELRDEAIKFDAKGAM 140

Query: 123 ILIVKNGEIVFPEDLRPLRDMYPDIARKIVDYDEGDAVVITWADTPPKAFKSAIHVAYVM 182
           IL VK+ EIVFPED RPL++MYP++A+KIVDY++GDAV+ITWA+TP KA KSAIHVAY++
Sbjct: 141 ILTVKDNEIVFPEDFRPLKEMYPEVAKKIVDYEDGDAVIITWAETPAKALKSAIHVAYIL 200

Query: 183 KKDEIPGEVMEVVR 196
           KK+EI  E++EVV+
Sbjct: 201 KKEEITPEILEVVK 214


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.141    0.396 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72237524
Number of Sequences: 2977
Number of extensions: 2923514
Number of successful extensions: 7127
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7125
Number of HSP's gapped (non-prelim): 2
length of query: 196
length of database: 189,106,746
effective HSP length: 55
effective length of query: 141
effective length of database: 156,189,961
effective search space: 22022784501
effective search space used: 22022784501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)