BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1505 (pyrF) DE:OROTIDINE-5'-MONOPHOSPHATE DECARBOXYLASE
(208 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75041 orotidine-5'-monophosphate decarboxylase PAB1505 - P... 412 e-114
sp|O58462|DCOP_PYRHO PROBABLE OROTIDINE 5'-PHOSPHATE DECARBOXYLA... 352 2e-96
sp|Q57700|DCOP_METJA PROBABLE OROTIDINE 5'-PHOSPHATE DECARBOXYLA... 192 3e-48
pdb|1DVJ|A Chain A, Crystal Structure Of Orotidine Monophosphate... 175 4e-43
pdb|1DV7|A Chain A, Crystal Structure Of Orotidine Monophosphate... 175 4e-43
sp|O26232|DCOP_METTH PROBABLE OROTIDINE 5'-PHOSPHATE DECARBOXYLA... 175 5e-43
sp|O74110|DCOP_THEAC PROBABLE OROTIDINE 5'-PHOSPHATE DECARBOXYLA... 155 4e-37
emb|CAC11221.1| (AL445063) orotidine-5'-monophosphate decarboxyl... 155 4e-37
pir||T37332 probable orotidine-5'-phosphate decarboxylase (EC 4.... 152 2e-36
gi|11498534 conserved hypothetical protein [Archaeoglobus fulgid... 151 5e-36
sp|Q9Y9D9|DCOP_AERPE PROBABLE OROTIDINE 5'-PHOSPHATE DECARBOXYLA... 127 1e-28
gb|AAK40927.1| Orotidine 5'-phosphate decarboxylase (OMP decarbo... 96 4e-19
emb|CAB57684.1| (Y18930) hypothetical protein [Sulfolobus solfat... 96 4e-19
sp|P43812|DCOP_HAEIN OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (OMP D... 74 2e-12
sp|O67520|DCOP_AQUAE OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (OMP D... 74 2e-12
pir||C81381 orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) C... 69 3e-11
>pir||C75041 orotidine-5'-monophosphate decarboxylase PAB1505 - Pyrococcus
abyssi (strain Orsay) >gi|5458737|emb|CAB50224.1|
(AJ248287) OROTIDINE-5'-MONOPHOSPHATE DECARBOXYLASE
[Pyrococcus abyssi]
Length = 208
Score = 412 bits (1048), Expect = e-114
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MIVLALDVYDEDRALKIAEETKDYVAMIKVNWPLIIGSGLDIIRKLKDRTGLKIIADLKL 60
MIVLALDVYDEDRALKIAEETKDYVAMIKVNWPLIIGSGLDIIRKLKDRTGLKIIADLKL
Sbjct: 1 MIVLALDVYDEDRALKIAEETKDYVAMIKVNWPLIIGSGLDIIRKLKDRTGLKIIADLKL 60
Query: 61 ADIPNTNKLIARKVYEAGADYIIVHPFVGRDSVEAVNELGEIILVVEMSHPGALEFINPL 120
ADIPNTNKLIARKVYEAGADYIIVHPFVGRDSVEAVNELGEIILVVEMSHPGALEFINPL
Sbjct: 61 ADIPNTNKLIARKVYEAGADYIIVHPFVGRDSVEAVNELGEIILVVEMSHPGALEFINPL 120
Query: 121 TDKFIELANDVEPFGVIAPGTRPERVKYIRERLKEGVKILTPGIGAQGGKAKEAIEAGAD 180
TDKFIELANDVEPFGVIAPGTRPERVKYIRERLKEGVKILTPGIGAQGGKAKEAIEAGAD
Sbjct: 121 TDKFIELANDVEPFGVIAPGTRPERVKYIRERLKEGVKILTPGIGAQGGKAKEAIEAGAD 180
Query: 181 YVIVGRSIYNAPNPREAAREIYDEIRGE 208
YVIVGRSIYNAPNPREAAREIYDEIRGE
Sbjct: 181 YVIVGRSIYNAPNPREAAREIYDEIRGE 208
>sp|O58462|DCOP_PYRHO PROBABLE OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (OMP DECARBOXYLASE)
(OMPDCASE) >gi|7450282|pir||D71120 hypothetical protein
PH0731 - Pyrococcus horikoshii
>gi|3257139|dbj|BAA29822.1| (AP000003) 241aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 241
Score = 352 bits (893), Expect = 2e-96
Identities = 166/207 (80%), Positives = 196/207 (94%)
Query: 1 MIVLALDVYDEDRALKIAEETKDYVAMIKVNWPLIIGSGLDIIRKLKDRTGLKIIADLKL 60
+IVLALDVY+ +RA+KIA+ KDY++MIKVNWPLI+GSG+DIIR+LK+ TG++IIADLKL
Sbjct: 34 VIVLALDVYEGERAIKIAKSVKDYISMIKVNWPLILGSGVDIIRRLKEETGVEIIADLKL 93
Query: 61 ADIPNTNKLIARKVYEAGADYIIVHPFVGRDSVEAVNELGEIILVVEMSHPGALEFINPL 120
ADIPNTN+LIARKV+ AGADY+IVH FVGRDSV AV ELGEII+VVEMSHPGALEFINPL
Sbjct: 94 ADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAVKELGEIIMVVEMSHPGALEFINPL 153
Query: 121 TDKFIELANDVEPFGVIAPGTRPERVKYIRERLKEGVKILTPGIGAQGGKAKEAIEAGAD 180
TD+FIE+AN++EPFGVIAPGTRPER+ YIR+RLKEG+KIL PGIGAQGGKAK+A++AGAD
Sbjct: 154 TDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGAD 213
Query: 181 YVIVGRSIYNAPNPREAAREIYDEIRG 207
Y+IVGR+IYNAPNPREAA+ IYDEIRG
Sbjct: 214 YIIVGRAIYNAPNPREAAKAIYDEIRG 240
>sp|Q57700|DCOP_METJA PROBABLE OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (OMP DECARBOXYLASE)
(OMPDCASE) >gi|2128198|pir||E64331 hypothetical protein
MJ0252 - Methanococcus jannaschii
>gi|1590982|gb|AAB98239.1| (U67480) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 234
Score = 192 bits (483), Expect = 3e-48
Identities = 100/206 (48%), Positives = 146/206 (70%), Gaps = 10/206 (4%)
Query: 2 IVLALDVYDEDRALKIAEETKDYVAMIKVNWPLIIGSGLDIIRKLKDRTGLKIIADLKLA 61
++LALDV D DRALKI E+ KDYV IKV +PL++ +G +II+++K ++IAD K+A
Sbjct: 25 LMLALDVLDRDRALKIVEDVKDYVDAIKVGYPLVLSTGTEIIKEIKKLCNKEVIADFKVA 84
Query: 62 DIPNTNKLIARKVYEAGADYIIVHPFVGRDSVEAVNELG-----EIILVVEMSHPGALEF 116
DIP TN+ IA K+ AD IIVH FVG DSV+AV ++ ++I+V EMSHPGA++F
Sbjct: 85 DIPATNEKIA-KITLKYADGIIVHGFVGEDSVKAVQDVAKKLNKKVIMVTEMSHPGAVQF 143
Query: 117 INPLTDKFIELANDVEPFGVIAPGTRPERVKYIRERLKEGVKILTPGIGAQGGKAKEAIE 176
+ P+ DK E+A ++ ++AP TRPER+K I+E + + ++TPG+GAQGGK ++ +
Sbjct: 144 LQPIADKLSEMAKKLKVDAIVAPSTRPERLKEIKEIAE--LPVITPGVGAQGGKIEDILN 201
Query: 177 A--GADYVIVGRSIYNAPNPREAARE 200
DYVIVGR+IY + NP+E A++
Sbjct: 202 ILDENDYVIVGRAIYQSQNPKEEAKK 227
>pdb|1DVJ|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complexed With 6-Azaump >gi|7546206|pdb|1DVJ|C Chain C,
Crystal Structure Of Orotidine Monophosphate
Decarboxylase Complexed With 6-Azaump
>gi|7546207|pdb|1DVJ|D Chain D, Crystal Structure Of
Orotidine Monophosphate Decarboxylase Complexed With
6-Azaump >gi|7546205|pdb|1DVJ|B Chain B, Crystal
Structure Of Orotidine Monophosphate Decarboxylase
Complexed With 6-Azaump
Length = 246
Score = 175 bits (439), Expect = 4e-43
Identities = 91/210 (43%), Positives = 133/210 (63%), Gaps = 6/210 (2%)
Query: 2 IVLALDVYDEDRALKIAEETKDYVAMIKVNWPLIIGSGLDIIRKLKDRTGLKIIADLKLA 61
++LA+D+ + D AL++ E ++Y+ +K+ +PL++ G+DII + + R G +IIAD K+A
Sbjct: 14 LILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFKVA 73
Query: 62 DIPNTNKLIARKVYEAGADYIIVHPFVGRDSVEA----VNELG-EIILVVEMSHPGALEF 116
DIP TN+ I R ++AGAD IIVH F G DSV A E+G E+ L+ EMSHPGA F
Sbjct: 74 DIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMF 133
Query: 117 INPLTDKFIELANDVEPFGVIAPGTRPERVKYIRERLKEGVKILTPGIGAQGGKAKEAIE 176
I D+ + D+ + P TRPER+ +RE + + +++PG+GAQGG E +
Sbjct: 134 IQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGETLR 193
Query: 177 AGADYVIVGRSIYNAPNPREAAREIYDEIR 206
AD +IVGRSIY A NP AA I + I+
Sbjct: 194 F-ADAIIVGRSIYLADNPAAAAAGIIESIK 222
>pdb|1DV7|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Length = 227
Score = 175 bits (439), Expect = 4e-43
Identities = 91/210 (43%), Positives = 133/210 (63%), Gaps = 6/210 (2%)
Query: 2 IVLALDVYDEDRALKIAEETKDYVAMIKVNWPLIIGSGLDIIRKLKDRTGLKIIADLKLA 61
++LA+D+ + D AL++ E ++Y+ +K+ +PL++ G+DII + + R G +IIAD K+A
Sbjct: 14 LILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFKVA 73
Query: 62 DIPNTNKLIARKVYEAGADYIIVHPFVGRDSVEA----VNELG-EIILVVEMSHPGALEF 116
DIP TN+ I R ++AGAD IIVH F G DSV A E+G E+ L+ EMSHPGA F
Sbjct: 74 DIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMF 133
Query: 117 INPLTDKFIELANDVEPFGVIAPGTRPERVKYIRERLKEGVKILTPGIGAQGGKAKEAIE 176
I D+ + D+ + P TRPER+ +RE + + +++PG+GAQGG E +
Sbjct: 134 IQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGETLR 193
Query: 177 AGADYVIVGRSIYNAPNPREAAREIYDEIR 206
AD +IVGRSIY A NP AA I + I+
Sbjct: 194 F-ADAIIVGRSIYLADNPAAAAAGIIESIK 222
>sp|O26232|DCOP_METTH PROBABLE OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (OMP DECARBOXYLASE)
(OMPDCASE) >gi|7450279|pir||F69038 orotidine 5'
monophosphate decarboxylase - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621169|gb|AAB84635.1| (AE000802) orotidine 5'
monophosphate decarboxylase [Methanobacterium
thermoautotrophicum]
Length = 228
Score = 175 bits (438), Expect = 5e-43
Identities = 91/210 (43%), Positives = 133/210 (63%), Gaps = 6/210 (2%)
Query: 2 IVLALDVYDEDRALKIAEETKDYVAMIKVNWPLIIGSGLDIIRKLKDRTGLKIIADLKLA 61
++LA+D+ + D AL++ E ++Y+ +K+ +PL++ G+DII + + R G +IIAD K+A
Sbjct: 15 LILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFKVA 74
Query: 62 DIPNTNKLIARKVYEAGADYIIVHPFVGRDSVEA----VNELG-EIILVVEMSHPGALEF 116
DIP TN+ I R ++AGAD IIVH F G DSV A E+G E+ L+ EMSHPGA F
Sbjct: 75 DIPETNEKICRATFKAGADAIIVHGFRGADSVRACLNVAEEMGREVFLLTEMSHPGAEMF 134
Query: 117 INPLTDKFIELANDVEPFGVIAPGTRPERVKYIRERLKEGVKILTPGIGAQGGKAKEAIE 176
I D+ + D+ + P TRPER+ +RE + + +++PG+GAQGG E +
Sbjct: 135 IQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGETLR 194
Query: 177 AGADYVIVGRSIYNAPNPREAAREIYDEIR 206
AD +IVGRSIY A NP AA I + I+
Sbjct: 195 F-ADAIIVGRSIYLADNPAAAAAGIIESIK 223
>sp|O74110|DCOP_THEAC PROBABLE OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (OMP DECARBOXYLASE)
(OMPDCASE)
Length = 214
Score = 155 bits (388), Expect = 4e-37
Identities = 89/207 (42%), Positives = 132/207 (62%), Gaps = 8/207 (3%)
Query: 2 IVLALDVYDEDRALKIAEETKDYVAMIKVNWPLIIGSGLDIIRKLKDRTGLKIIADLKLA 61
+V+ALD+ D+DRAL+IA V IK+NWPL++ II ++ + +++ D K+A
Sbjct: 6 LVVALDLTDKDRALEIARSIGRQVFAIKINWPLVLAGSGSIIGEIARVS--RVVCDFKIA 63
Query: 62 DIPNTNKLIARKVYEAGADYIIVHPFVGRDSVEAVNELG---EIILVVEMSHPGALEFIN 118
DIPNTN +IA+ + GA II H F G +S+ +V E ++ VV MSHPG+ + IN
Sbjct: 64 DIPNTNSIIAKFARDQGAWGIISHSFTGLESLRSVVEASGDTKVFSVVAMSHPGS-DLIN 122
Query: 119 PLTDKFIELANDVEPFGVIAPGTRPERVKYIRERLKEGVKILTPGIGAQGGKAKEAIEAG 178
K ++++ +G IAPG + + IR+R K+ I++PGIG+QGG+A +AI+AG
Sbjct: 123 DNYRKLMDISERAGVYGYIAPGNKLSDLSEIRKRTKK--TIMSPGIGSQGGRASDAIKAG 180
Query: 179 ADYVIVGRSIYNAPNPREAAREIYDEI 205
AD VIVGRSIY + +P AA I +EI
Sbjct: 181 ADLVIVGRSIYESADPVTAAEAINEEI 207
>emb|CAC11221.1| (AL445063) orotidine-5'-monophosphate decarboxylase (pyrF)
[Thermoplasma acidophilum]
Length = 215
Score = 155 bits (388), Expect = 4e-37
Identities = 89/207 (42%), Positives = 132/207 (62%), Gaps = 8/207 (3%)
Query: 2 IVLALDVYDEDRALKIAEETKDYVAMIKVNWPLIIGSGLDIIRKLKDRTGLKIIADLKLA 61
+V+ALD+ D+DRAL+IA V IK+NWPL++ II ++ + +++ D K+A
Sbjct: 7 LVVALDLTDKDRALEIARSIGRQVFAIKINWPLVLAGSGSIIGEIARVS--RVVCDFKIA 64
Query: 62 DIPNTNKLIARKVYEAGADYIIVHPFVGRDSVEAVNELG---EIILVVEMSHPGALEFIN 118
DIPNTN +IA+ + GA II H F G +S+ +V E ++ VV MSHPG+ + IN
Sbjct: 65 DIPNTNSIIAKFARDQGAWGIISHSFTGLESLRSVVEASGDTKVFSVVAMSHPGS-DLIN 123
Query: 119 PLTDKFIELANDVEPFGVIAPGTRPERVKYIRERLKEGVKILTPGIGAQGGKAKEAIEAG 178
K ++++ +G IAPG + + IR+R K+ I++PGIG+QGG+A +AI+AG
Sbjct: 124 DNYRKLMDISERAGVYGYIAPGNKLSDLSEIRKRTKK--TIMSPGIGSQGGRASDAIKAG 181
Query: 179 ADYVIVGRSIYNAPNPREAAREIYDEI 205
AD VIVGRSIY + +P AA I +EI
Sbjct: 182 ADLVIVGRSIYESADPVTAAEAINEEI 208
>pir||T37332 probable orotidine-5'-phosphate decarboxylase (EC 4.1.1.23) -
Thermoplasma acidophilum >gi|3249059|gb|AAC24044.1|
(AF038845) orotidine-5'-monophosphate decarboxylase
[Thermoplasma acidophilum]
Length = 214
Score = 152 bits (381), Expect = 2e-36
Identities = 88/207 (42%), Positives = 131/207 (62%), Gaps = 8/207 (3%)
Query: 2 IVLALDVYDEDRALKIAEETKDYVAMIKVNWPLIIGSGLDIIRKLKDRTGLKIIADLKLA 61
+V+ALD+ D+DRAL+IA V IK+NWPL++ II ++ + +++ D K+A
Sbjct: 6 LVVALDLTDKDRALEIARSIGRQVFAIKINWPLVLAGSGSIIGEIARVS--RVVCDFKIA 63
Query: 62 DIPNTNKLIARKVYEAGADYIIVHPFVGRDSVEAVNELG---EIILVVEMSHPGALEFIN 118
DIPNTN +IA+ + GA II H F G +S+ +V E ++ VV MSHPG+ + IN
Sbjct: 64 DIPNTNSIIAKFARDQGAWGIISHSFTGLESLRSVVEASGDTKVFSVVAMSHPGS-DLIN 122
Query: 119 PLTDKFIELANDVEPFGVIAPGTRPERVKYIRERLKEGVKILTPGIGAQGGKAKEAIEAG 178
K ++++ +G IAPG + + IR+R K+ I++PGIG+QGG+A +AI+AG
Sbjct: 123 DNYRKLMDISERAGVYGYIAPGNKLSDLSEIRKRTKK--TIMSPGIGSQGGRASDAIKAG 180
Query: 179 ADYVIVGRSIYNAPNPREAAREIYDEI 205
AD VIVGRSIY + +P AA I + I
Sbjct: 181 ADLVIVGRSIYESADPVTAAEAINEGI 207
>gi|11498534 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7387618|sp|O29333|DCOP_ARCFU PROBABLE OROTIDINE
5'-PHOSPHATE DECARBOXYLASE (OMP DECARBOXYLASE)
(OMPDCASE) >gi|7450278|pir||A69366 conserved
hypothetical protein AF0929 - Archaeoglobus fulgidus
>gi|2649667|gb|AAB90309.1| (AE001039) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 241
Score = 151 bits (378), Expect = 5e-36
Identities = 86/205 (41%), Positives = 137/205 (65%), Gaps = 10/205 (4%)
Query: 2 IVLALDVYDEDRALKIAEETKDYVAMIKVNWPLIIGSGLDIIRKLKDRTGLKIIADLKLA 61
++LALDV D ++A++IA++ ++V IKVN+PL++ +G+ I+++L + +IAD K+A
Sbjct: 36 LILALDVMDGEKAMEIAKKVAEHVDRIKVNYPLVLSAGVGIMKRLSEIK--PVIADFKIA 93
Query: 62 DIPNTNKLIARKVYEAGADYIIVHPFVGRDSVEAVNEL-----GEIILVVEMSHPGALEF 116
D+P T+ LIAR +E A+ +IVH FVG D++ V + G++ V E+S PG EF
Sbjct: 94 DVPYTSSLIARIAFENSAESVIVHGFVGSDTLREVCRVAEEFGGKVYAVTELSSPGGEEF 153
Query: 117 INPLTDKFIELANDVEPFGVIAPGTRPERVKYIRERLKEGVKILTPGIGAQGGKAKEAIE 176
++ ++ K +E A + G+IAP TR ER++ IR+ + ++IL PGIGAQ G EA++
Sbjct: 154 MSAVSLKIVEKAKEAGCHGLIAPSTRIERLREIRKAAGD-MEILCPGIGAQKGSI-EAVK 211
Query: 177 AGADYVIVGRSIYNAPNPREAAREI 201
AD +IVGR IY + NP E AR++
Sbjct: 212 Y-ADGIIVGRGIYASGNPAEEARKL 235
>sp|Q9Y9D9|DCOP_AERPE PROBABLE OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (OMP DECARBOXYLASE)
(OMPDCASE) >gi|7450280|pir||A72463 hypothetical protein
APE2348 - Aeropyrum pernix (strain K1)
>gi|5106050|dbj|BAA81361.1| (AP000064) 244aa long
hypothetical protein [Aeropyrum pernix]
Length = 244
Score = 127 bits (316), Expect = 1e-28
Identities = 89/217 (41%), Positives = 125/217 (57%), Gaps = 16/217 (7%)
Query: 2 IVLALDVY---DEDRALKIAEETKDYVAMIKVNWPLIIGSGLDIIR---KLKDRTGLKII 55
+++ALD D DR L +A A IKV P++ G + + +L GL+++
Sbjct: 13 VIVALDPARRGDVDRLLDMARLVCGVGAGIKVGLPMLALGGSEALAEAARLCKGGGLRVL 72
Query: 56 ADLKLADIPNTNKLIARKVYEAGADYIIVHPFVGRDS-----VEAVNELG-EIILVVEMS 109
DLKLADI +L A + G D I H FVG + + ++ LG ++LVV MS
Sbjct: 73 -DLKLADIGYIMRLAAESL-SRGFDAAIAHAFVGYEGGLVELKKTLDGLGARLVLVVSMS 130
Query: 110 HPGALEFINPLTDKFIELANDVEPFGVIAPGTRPERVKYIRERLKEGVKILTPGIGAQGG 169
HPG+ E ++P DK + +A VEP+GV+AP TRPE V +RE L V IL+PG+GAQGG
Sbjct: 131 HPGSREVLDPCLDKLLAVARRVEPWGVVAPATRPEVVARVRETLPTTV-ILSPGVGAQGG 189
Query: 170 KAKEAI-EAGADYVIVGRSIYNAPNPREAAREIYDEI 205
K +AI GADY IVGR + +P+P A R + + I
Sbjct: 190 KPGDAICLGGADYEIVGRMVAGSPDPVSALRGVAEYI 226
>gb|AAK40927.1| Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPdcase)
(pyrF) [Sulfolobus solfataricus]
Length = 222
Score = 95.6 bits (234), Expect = 4e-19
Identities = 68/207 (32%), Positives = 113/207 (53%), Gaps = 16/207 (7%)
Query: 2 IVLALDVYDEDRALKIAEETKDYVAMIKVNWPLIIGSGLDIIRKLKDRTGLK-IIADLKL 60
++LA+D + + ++ +E ++ + IKV PL++ G+D R+L ++ II D KL
Sbjct: 6 VILAMD---KPLSYQVLKEMENELYGIKVGLPLVLDLGVDKTRELLIGLDVEEIIVDFKL 62
Query: 61 ADIPNTNKLIARKVYEAGADYIIVHPFVG-RDSVEAVNELGE-----IILVVEMSHPGAL 114
ADI K I ++ + A+ I H F+G + S++ + + + LV MSH G
Sbjct: 63 ADIGYIMKSIVERL--SFANSFIAHSFIGVKGSLDELKRYLDANSKNLYLVAVMSHEG-- 118
Query: 115 EFINPLTDKFIELANDVEPFGVIAPGTRPERVKYIRERLKEGVKILTPGIGAQGGKAKEA 174
+ D + ++ P G++ GT+ + + R E + I++PG+G+QGG +A
Sbjct: 119 -WSTLFADYIKNVIREISPKGIVVGGTKLDHITQYRRDF-EKMTIVSPGMGSQGGSYGDA 176
Query: 175 IEAGADYVIVGRSIYNAPNPREAAREI 201
+ AGADY I+GRSIYNA NP A R I
Sbjct: 177 VCAGADYEIIGRSIYNAGNPLTALRTI 203
>emb|CAB57684.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 222
Score = 95.6 bits (234), Expect = 4e-19
Identities = 68/207 (32%), Positives = 113/207 (53%), Gaps = 16/207 (7%)
Query: 2 IVLALDVYDEDRALKIAEETKDYVAMIKVNWPLIIGSGLDIIRKLKDRTGLK-IIADLKL 60
++LA+D + + ++ +E ++ + IKV PL++ G+D R+L ++ II D KL
Sbjct: 6 VILAMD---KPLSYQVLKEMENELYGIKVGLPLVLDLGVDKTRELLIGLDVEEIIVDFKL 62
Query: 61 ADIPNTNKLIARKVYEAGADYIIVHPFVG-RDSVEAVNELGE-----IILVVEMSHPGAL 114
ADI K I ++ + A+ I H F+G + S++ + + + LV MSH G
Sbjct: 63 ADIGYIMKSIVERL--SFANSFIAHSFIGVKGSLDELKRYLDANSKNLYLVAVMSHEG-- 118
Query: 115 EFINPLTDKFIELANDVEPFGVIAPGTRPERVKYIRERLKEGVKILTPGIGAQGGKAKEA 174
+ D + ++ P G++ GT+ + + R E + I++PG+G+QGG +A
Sbjct: 119 -WSTLFADYIKNVIREISPKGIVVGGTKLDHITQYRRDF-EKMTIVSPGMGSQGGSYGDA 176
Query: 175 IEAGADYVIVGRSIYNAPNPREAAREI 201
+ AGADY I+GRSIYNA NP A R I
Sbjct: 177 VCAGADYEIIGRSIYNAGNPLTALRTI 203
>sp|P43812|DCOP_HAEIN OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (OMP DECARBOXYLASE) (OMPDCASE)
>gi|1075094|pir||B64111 orotidine-5'-phosphate
decarboxylase (EC 4.1.1.23) - Haemophilus influenzae
(strain Rd KW20) >gi|1574155|gb|AAC22877.1| (U32802)
orotidine 5'-phosphate decarboxylase (pyrF) [Haemophilus
influenzae Rd]
Length = 230
Score = 73.7 bits (178), Expect = 2e-12
Identities = 59/223 (26%), Positives = 102/223 (45%), Gaps = 25/223 (11%)
Query: 2 IVLALDVYDEDRALKIAEETKDYVAMIKVNWPLIIGSGLDIIRKLKDRTGLKIIADLKLA 61
I++ALD E AL + ++ + +KV + G++ +++L R + DLK
Sbjct: 5 IIVALDFEKEAEALALVDQIDPSLCRLKVGKEMFTTLGINFVKQLHQRN-FDVFLDLKYH 63
Query: 62 DIPNTNKLIARKVYEAGADYIIVHPFVGRDSVEAVNELGE--------IILVVEMSHPGA 113
DIPNT R + G + +H G +E ++ E +I V ++
Sbjct: 64 DIPNTVARAVRSAADLGVWMVDLHASGGLRMMEDAKKILEPYGKDAPLLIAVTVLTSMED 123
Query: 114 LEFI------NPLTDKFIELANDVEPFGVIAPGTRPERVKYIRERLKEGVKILTPGI--- 164
L+ + +P+ ++ + LA+ + G+ P+ V+ +R E K++TPGI
Sbjct: 124 LDLLQIGINASPM-EQVLRLAHLTQRAGLDGVVCSPQEVEILRNACGEDFKLVTPGIRPI 182
Query: 165 GAQGGKAKE------AIEAGADYVIVGRSIYNAPNPREAAREI 201
G G + AI AG+DY+++GR I A NP E R I
Sbjct: 183 GTDFGDQRRVMTPTAAIRAGSDYLVIGRPITQADNPAEVLRSI 225
>sp|O67520|DCOP_AQUAE OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (OMP DECARBOXYLASE) (OMPDCASE)
>gi|7436528|pir||F70436 orotidine-5'-phosphate
decarboxylase - Aquifex aeolicus
>gi|2983933|gb|AAC07482.1| (AE000746)
orotidine-5'-phosphate decarboxylase [Aquifex aeolicus]
Length = 231
Score = 73.7 bits (178), Expect = 2e-12
Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 29/218 (13%)
Query: 2 IVLALDVYDEDRALKIAEETKD----YVAMIKVNWPLIIGSGLDIIRKLKDRTGLKIIAD 57
I +ALDV E RA+KI ++ D Y ++K+ + + G D +++LK+ ++ D
Sbjct: 4 ICVALDVPWE-RAIKIVKDLYDFFETYPLILKIGHKIYLEKGGDAVKELKEDFPYEVFLD 62
Query: 58 LKLADIPNTNKLIARKVYEAGADYIIVHPFVGRDSV-EAVNELGEI-ILVVEMSHPGALE 115
LKL DIP+ L K+ E G DY VH G + V EAV G + IL V +
Sbjct: 63 LKLHDIPSVVGLAVEKISELGTDYTTVHLLGGPEMVKEAVKNKGSMKILGVTILTSHDEN 122
Query: 116 FINPLTDKFIELAN----------DVEPFGVIAPGTRPERVKYIRERLKEGVKILTPGIG 165
+I L F ++ N + GV+ G E V+++++ +++ + PGI
Sbjct: 123 YIKFLKSNFEDIKNFTLYLARVGIENGVDGVVCSG---EEVEFLKKNIEKDFIAVVPGIR 179
Query: 166 AQGGK---------AKEAIEAGADYVIVGRSIYNAPNP 194
+ K EA + GAD +++GR I + NP
Sbjct: 180 IKKEKRHDQKRVLTPAEAKKRGADVIVIGREITESKNP 217
>pir||C81381 orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) Cj0381c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6967855|emb|CAB74217.1| (AL139075) orotidine
5'-phosphate decarboxylase [Campylobacter jejuni]
Length = 279
Score = 69.5 bits (167), Expect = 3e-11
Identities = 60/224 (26%), Positives = 99/224 (43%), Gaps = 20/224 (8%)
Query: 2 IVLALDVYDEDRALKIAEETKDYVAMIKVNWPLIIGSGLDIIRKLKDRTGLKIIADLKLA 61
+ +ALD+ ++ L++A+E K+ +KV + G I +LK KI DLK
Sbjct: 3 LCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFIEELKKVDDFKIFLDLKFH 62
Query: 62 DIPNTNKLIARKVYEAGADYIIVHPFVGRDSVEAV----NELGEIILVVEMSHPGALEFI 117
DIPNT +V + G D I +H G+ +++ V ++ + LV+ +S + +
Sbjct: 63 DIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLSKFSKRPLVLAVSALTSFDEE 122
Query: 118 NPLTDKFIELANDVEPFGVIAPGTRPERV-------KYIRERLKEGVKILTPGIGAQG-- 168
N + ++ V F I+ + + K I+E LTPGI G
Sbjct: 123 NFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKKIKEHTSSNFLTLTPGIRPFGET 182
Query: 169 -------GKAKEAIEAGADYVIVGRSIYNAPNPREAAREIYDEI 205
A E +DY++VGR IY NPR +I ++I
Sbjct: 183 NDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAVCEKILNKI 226
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.142 0.397
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76711438
Number of Sequences: 2977
Number of extensions: 3203338
Number of successful extensions: 9017
Number of sequences better than 1.0e-10: 16
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 8974
Number of HSP's gapped (non-prelim): 16
length of query: 208
length of database: 189,106,746
effective HSP length: 55
effective length of query: 153
effective length of database: 156,189,961
effective search space: 23897064033
effective search space used: 23897064033
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)