BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1506 (PAB1506) DE:Hypothetical protein
(172 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75041 hypothetical protein PAB1506 - Pyrococcus abyssi (st... 343 6e-94
pir||G71120 hypothetical protein PH0734 - Pyrococcus horikoshii ... 322 2e-87
pir||G64478 hypothetical protein YER007c-a homolog - Methanococc... 138 3e-32
gi|11499000 conserved hypothetical protein [Archaeoglobus fulgid... 115 2e-25
pir||E69186 conserved hypothetical protein MTH650 - Methanobacte... 113 2e-24
emb|CAC12543.1| (AL445067) conserved hypothetical protein [Therm... 92 5e-18
gb|AAG20678.1| (AE005137) Vng2646c [Halobacterium sp. NRC-1] 74 1e-12
gi|7662502 MCT-1 protein [Homo sapiens] >gi|11420610|ref|XP_0102... 70 1e-11
gi|6320844 Yer007c-ap [Saccharomyces cerevisiae] >gi|1084581|pir... 70 2e-11
pir||T40215 hypothetical protein SPBC31F10.12 - fission yeast (... 68 5e-11
>pir||B75041 hypothetical protein PAB1506 - Pyrococcus abyssi (strain Orsay)
>gi|5458736|emb|CAB50223.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 172
Score = 343 bits (871), Expect = 6e-94
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MELKVKHPLSKKEVKGIIAQLSQMFGEEIAGKMLNKKDEVKVAEFDKTTEIILVNGKPMF 60
MELKVKHPLSKKEVKGIIAQLSQMFGEEIAGKMLNKKDEVKVAEFDKTTEIILVNGKPMF
Sbjct: 1 MELKVKHPLSKKEVKGIIAQLSQMFGEEIAGKMLNKKDEVKVAEFDKTTEIILVNGKPMF 60
Query: 61 IRRKELIFPLVIALYNISDEEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVDADENIKE 120
IRRKELIFPLVIALYNISDEEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVDADENIKE
Sbjct: 61 IRRKELIFPLVIALYNISDEEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVDADENIKE 120
Query: 121 GDFVFVVEEKYGRPLAIGVALMSGKAMKEKSRGKAVKVIHHARDKIWQVTAG 172
GDFVFVVEEKYGRPLAIGVALMSGKAMKEKSRGKAVKVIHHARDKIWQVTAG
Sbjct: 121 GDFVFVVEEKYGRPLAIGVALMSGKAMKEKSRGKAVKVIHHARDKIWQVTAG 172
>pir||G71120 hypothetical protein PH0734 - Pyrococcus horikoshii
>gi|3257142|dbj|BAA29825.1| (AP000003) 175aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 175
Score = 322 bits (816), Expect = 2e-87
Identities = 159/171 (92%), Positives = 166/171 (96%)
Query: 1 MELKVKHPLSKKEVKGIIAQLSQMFGEEIAGKMLNKKDEVKVAEFDKTTEIILVNGKPMF 60
MELK+KHPLSKK+VK IIAQLSQMFGEEIA KMLNKKDEVKVAEFDKTTEIILVN KPMF
Sbjct: 4 MELKIKHPLSKKDVKEIIAQLSQMFGEEIARKMLNKKDEVKVAEFDKTTEIILVNDKPMF 63
Query: 61 IRRKELIFPLVIALYNISDEEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVDADENIKE 120
IRRK+LIFPLVIALYN+SDEEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVDADE IKE
Sbjct: 64 IRRKDLIFPLVIALYNLSDEEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVDADEGIKE 123
Query: 121 GDFVFVVEEKYGRPLAIGVALMSGKAMKEKSRGKAVKVIHHARDKIWQVTA 171
GDFVFVVEEKYGRPLAIG+ALMSGK MKEK+RGKAVKVIHHARDKIW+VTA
Sbjct: 124 GDFVFVVEEKYGRPLAIGIALMSGKVMKEKNRGKAVKVIHHARDKIWEVTA 174
>pir||G64478 hypothetical protein YER007c-a homolog - Methanococcus jannaschii
>gi|1592081|gb|AAB99442.1| (U67584) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 162
Score = 138 bits (345), Expect = 3e-32
Identities = 76/167 (45%), Positives = 112/167 (66%), Gaps = 9/167 (5%)
Query: 1 MELKVKHPLSKKEVKGIIAQLSQMFGEEIAGKMLNKKDEVKVAEFDKTTEIILVNGKPMF 60
ME++ ++ LSKK+VK I +L F E +++ KK V++A D EIILV+ +P+
Sbjct: 1 MEIRKRYFLSKKDVKKIKKELEVFF--ENVDEIIPKKGNVEIAITDDF-EIILVDKEPIA 57
Query: 61 IRRKELIFPLVIALYNISDEEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVDADENIKE 120
++ + + P + L +++L VVVD GA+ ++NGADVMAPGIVDADENIKE
Sbjct: 58 FKKDDKVIPTLKLLLKSLPDKNL------VVVDIGAIKFLINGADVMAPGIVDADENIKE 111
Query: 121 GDFVFVVEEKYGRPLAIGVALMSGKAMKEKSRGKAVKVIHHARDKIW 167
D VFVV+E + +P+ +G+ALM+GK MKE +GKA+K +H+ DKIW
Sbjct: 112 EDVVFVVDENHKKPICVGIALMNGKEMKEADKGKAIKNLHYVGDKIW 158
>gi|11499000 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7430217|pir||D69425 conserved hypothetical protein
AF1405 - Archaeoglobus fulgidus
>gi|2649170|gb|AAB89845.1| (AE001007) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 154
Score = 115 bits (286), Expect = 2e-25
Identities = 69/160 (43%), Positives = 94/160 (58%), Gaps = 15/160 (9%)
Query: 9 LSKKEVKGIIAQLSQMFGEEIAGKMLNKKDEVKVAEFDKTTEIILVNGKPMFIRRKELIF 68
L KKE K + A++ + G + G+M DEV ++ILV+ +P+ I +
Sbjct: 6 LRKKEAKKVSAEVEENAGARVEGEM----DEVDFGSI----KVILVDNEPLVINYDGRYY 57
Query: 69 PLVIALYNISDEEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVDADENIKEGDFVFVVE 128
V + E+ RV VDEGA+ ++NGADVM PGIV ADE IKEGDFVFV
Sbjct: 58 LSVYGAIKLKPEK------YRVTVDEGALKFVMNGADVMKPGIVYADERIKEGDFVFVTV 111
Query: 129 EKYGRPLAIGVALMSGKAMKEKSRGKAVKVIHHARDKIWQ 168
E P+A+GVAL +G+ M + +GKAVK IHH +DKIW+
Sbjct: 112 EGKDSPIAVGVALCNGEEM-VRGKGKAVKNIHHIKDKIWK 150
>pir||E69186 conserved hypothetical protein MTH650 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621732|gb|AAB85155.1| (AE000845) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 160
Score = 113 bits (279), Expect = 2e-24
Identities = 64/169 (37%), Positives = 99/169 (57%), Gaps = 13/169 (7%)
Query: 1 MELKVKHPLSKKEVKGIIAQLSQMFGEEIAGKMLNKKDEVKVAEFDKTTEIILVNGKPMF 60
++++ ++ + KK+++ I Q+ ++ +K V++ E D IILVNG+P+
Sbjct: 3 VKIRKRYHIKKKKLREIRGQIGDY------SSLIPEKATVEIIETDDNN-IILVNGEPLL 55
Query: 61 IRRKELIFPLVIALYNISDEEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVDADENIKE 120
+ + + P + + + VVVD GAV + NGADVM+PGIVDAD I E
Sbjct: 56 MFIDDRVVPTLRGALKMEIDRGY------VVVDMGAVRFLANGADVMSPGIVDADPEISE 109
Query: 121 GDFVFVVEEKYGRPLAIGVALMSGKAMKEKSRGKAVKVIHHARDKIWQV 169
D V VV+E+ RPLA+G++L+SG M E+ GKAVK IHH D IW++
Sbjct: 110 NDTVVVVDERNRRPLAVGISLISGPEMVERDSGKAVKTIHHIGDAIWEL 158
>emb|CAC12543.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 153
Score = 91.7 bits (224), Expect = 5e-18
Identities = 59/161 (36%), Positives = 89/161 (54%), Gaps = 16/161 (9%)
Query: 6 KHPLSKKEVKGIIAQLSQMFGEEIAGKMLNKKDEVKVAEFDKTTEIILVNGKPMFIRRKE 65
KH +SKKE K I +++ +G +I G+ L + K+ + GKPM + +
Sbjct: 4 KHFISKKEAKRIWEAMAR-YGIDITGESLEVAAQ-------KSASAYYIGGKPMVFQAGD 55
Query: 66 LIFPLVIALYNISDEEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVDADENIKEGDFVF 125
LI P V L + ++ V VDEGA PHILNG+D+ APGIV D++I++GD +F
Sbjct: 56 LI-PSVYLLNYRNPSRNI------VTVDEGAEPHILNGSDLFAPGIVSMDDSIRKGDMIF 108
Query: 126 VVEEKYGRPLAIGVALMSGKAMKEKSRGKAVKVIHHARDKI 166
V K G +A+G+A M + RGKA ++IH D++
Sbjct: 109 VKSSK-GYFIAVGMAEMDAGEVMATKRGKAARIIHFPGDEL 148
>gb|AAG20678.1| (AE005137) Vng2646c [Halobacterium sp. NRC-1]
Length = 159
Score = 73.7 bits (178), Expect = 1e-12
Identities = 53/168 (31%), Positives = 78/168 (45%), Gaps = 12/168 (7%)
Query: 1 MELKVKHPLSKKEVKGIIAQLSQMFGEEIAGKMLNKKDEVKVAEFDKTTEIILVNGKPMF 60
M++ +H L ++ I L G E+ G + V D+ EI+LV+G P+
Sbjct: 1 MDVSSRHHLRSDDIDEIGDALRTGLGVELDGDAYER-----VTFADEEFEIVLVDGDPLV 55
Query: 61 IRRKELIFPLVIALYNISDEEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVDADENIKE 120
F V + V VD GAV + +GADVM PGI A I
Sbjct: 56 WYPDGEPFVTVAGANRTDPSTGV------VTVDAGAVSFVSDGADVMRPGITAASPEITA 109
Query: 121 GDFVFVVEEKYGRPLAIGVALMSGKAMKEKSRGKAVKVIHHARDKIWQ 168
GD V + E +G+ LA+G AL+ G M +S GK V +HH D++++
Sbjct: 110 GDLVVIQEAAHGKTLAVGRALVDGTEMDGES-GKVVSSLHHVGDELFE 156
>gi|7662502 MCT-1 protein [Homo sapiens] >gi|11420610|ref|XP_010278.1| MCT-1
protein [Homo sapiens] >gi|6177738|dbj|BAA86055.1|
(AB034206) MCT-1 [Homo sapiens]
Length = 181
Score = 70.2 bits (169), Expect = 1e-11
Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 9 LSKKEVKGIIAQLSQMFG--EEIAGKMLNKKDEVKVAEFDKTTEIILVNGKPMFIRRKEL 66
L +KGI QL + F E +++ KKD VK+ + EI+ VNG+ +F R++E
Sbjct: 17 LKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREG 76
Query: 67 IFPLVIALYNISDEEDLRKWP---RRVVVDEGAVPHILNGADVMAPGIVDADENIKEG-- 121
F + L L K+P VD+GA+ +L+GA++M PG+ +
Sbjct: 77 PFYPTLRL--------LHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAV 128
Query: 122 -DFVFVVEEKYGRPLAIGVALMSGKAMKEKSRGKAVKVIHHARDKIWQV 169
V ++ E L +GV MS + +++ ++G ++ IH+ D +W +
Sbjct: 129 DTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHM 177
>gi|6320844 Yer007c-ap [Saccharomyces cerevisiae] >gi|1084581|pir||S53543
hypothetical protein YER007c-a - yeast (Saccharomyces
cerevisiae) >gi|1877417|gb|AAB64566.1| (U18778)
Yel007c-ap [Saccharomyces cerevisiae]
Length = 181
Score = 69.9 bits (168), Expect = 2e-11
Identities = 39/170 (22%), Positives = 91/170 (52%), Gaps = 14/170 (8%)
Query: 4 KVKHPLSKKEVKGIIAQLSQMFGEEIAGKMLNKKDEVKVAEFDKTTEIILVNGKPMFIRR 63
KVK + + ++ Q ++ E++ +++ KK ++++ + + ++ V+G+ +F ++
Sbjct: 15 KVKSSIQRTLKAKLVKQYPKI--EDVIDELIPKKSQIELIKCEDKIQLYSVDGEVLFFQK 72
Query: 64 KELIFPLVIALYNISDEEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVDADENI----- 118
+ + P + ++ + +P V VD GA+ +L+GA++M PG+ A ++
Sbjct: 73 FDELIPSLKLVHKFPEA-----YPT-VQVDRGAIKFVLSGANIMCPGLTSAGADLPPAPG 126
Query: 119 -KEGDFVFVVEEKYGRPLAIGVALMSGKAMKEKSRGKAVKVIHHARDKIW 167
++G V + E LAIG +M + +K ++G ++++IHH D +W
Sbjct: 127 YEKGTIVVINAENKENALAIGELMMGTEEIKSVNKGHSIELIHHLGDPLW 176
>pir||T40215 hypothetical protein SPBC31F10.12 - fission yeast
(Schizosaccharomyces pombe) >gi|4539267|emb|CAB39806.1|
(Z97204) hypothetical protein [Schizosaccharomyces
pombe]
Length = 184
Score = 68.3 bits (164), Expect = 5e-11
Identities = 45/173 (26%), Positives = 90/173 (52%), Gaps = 11/173 (6%)
Query: 2 ELKVKHPLSKKEVKGIIAQLSQMFG--EEIAGKMLNKKDEVKVAEFDKTTEIILVNGKPM 59
++K P+ +GI A+L Q + +++ +++ KK ++ + + + +NG+ +
Sbjct: 13 DIKGTTPIKSSIQRGIKAKLVQAYPNLKQVIDELIPKKSQLTQIKCEDRLFLYTLNGEII 72
Query: 60 FIRRKELIFPLVIALYNISDEEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVDADEN-- 117
+ + P++ +L + D +V VD GA+ +L+GA++M PG+V N
Sbjct: 73 LFQHFD--GPIIPSLRLVHKCPDAFT---QVRVDRGAIKFLLSGANIMIPGLVSKGGNLP 127
Query: 118 --IKEGDFVFVVEEKYGRPLAIGVALMSGKAMKEKSRGKAVKVIHHARDKIWQ 168
I++ +V V E P AIG+ MS K MKE ++G ++ +H+ D +W+
Sbjct: 128 DDIEKDQYVIVTAEGKEAPAAIGLTKMSAKEMKETNKGIGIENVHYLGDNLWK 180
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.389
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61469575
Number of Sequences: 2977
Number of extensions: 2547684
Number of successful extensions: 6406
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6391
Number of HSP's gapped (non-prelim): 10
length of query: 172
length of database: 189,106,746
effective HSP length: 55
effective length of query: 117
effective length of database: 156,189,961
effective search space: 18274225437
effective search space used: 18274225437
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)