BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1509 (PAB1509) DE:Hypothetical protein
(155 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75040 hypothetical protein PAB1509 - Pyrococcus abyssi (st... 323 9e-88
pir||C71121 hypothetical protein PH0738 - Pyrococcus horikoshii ... 281 3e-75
pir||D72525 hypothetical protein APE2177 - Aeropyrum pernix (str... 145 2e-34
gi|11499026 A. fulgidus predicted coding region AF1431 [Archaeog... 106 2e-22
pir||B70934 hypothetical protein Rv0579 - Mycobacterium tubercul... 96 3e-19
pir||D72332 conserved hypothetical protein - Thermotoga maritima... 90 1e-17
emb|CAC12226.1| (AL445066) conserved hypothetical protein [Therm... 89 3e-17
gb|AAK40540.1| Conserved hypothetical protein [Sulfolobus solfat... 84 7e-16
pir||G72262 conserved hypothetical protein - Thermotoga maritima... 81 8e-15
pir||G70395 hypothetical protein aq_1110 - Aquifex aeolicus >gi|... 80 2e-14
dbj|BAB11227.1| (AB016884) gene_id:K16H17.2~pir||D72332~similar ... 71 7e-12
>pir||F75040 hypothetical protein PAB1509 - Pyrococcus abyssi (strain Orsay)
>gi|5458732|emb|CAB50219.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 155
Score = 323 bits (818), Expect = 9e-88
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MKFIADMMLGRLARWLRLYGYDTKYGIKDDDEIIETAKKEGRIILSRDLELVERAKKLGI 60
MKFIADMMLGRLARWLRLYGYDTKYGIKDDDEIIETAKKEGRIILSRDLELVERAKKLGI
Sbjct: 1 MKFIADMMLGRLARWLRLYGYDTKYGIKDDDEIIETAKKEGRIILSRDLELVERAKKLGI 60
Query: 61 KAIFIESNSIEGQIAQLMRLGIEFNELFPEGARCPKCNGIIVRVSKEEVKGKVPEKVYES 120
KAIFIESNSIEGQIAQLMRLGIEFNELFPEGARCPKCNGIIVRVSKEEVKGKVPEKVYES
Sbjct: 61 KAIFIESNSIEGQIAQLMRLGIEFNELFPEGARCPKCNGIIVRVSKEEVKGKVPEKVYES 120
Query: 121 YDEFYVCTNCGQIYWPGRQWEEMVKMDKKFRTNKP 155
YDEFYVCTNCGQIYWPGRQWEEMVKMDKKFRTNKP
Sbjct: 121 YDEFYVCTNCGQIYWPGRQWEEMVKMDKKFRTNKP 155
>pir||C71121 hypothetical protein PH0738 - Pyrococcus horikoshii
>gi|3257146|dbj|BAA29829.1| (AP000003) 155aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 155
Score = 281 bits (711), Expect = 3e-75
Identities = 127/155 (81%), Positives = 144/155 (91%)
Query: 1 MKFIADMMLGRLARWLRLYGYDTKYGIKDDDEIIETAKKEGRIILSRDLELVERAKKLGI 60
MKFIADMMLGRLARWLRLYGYDT+YG++DDDEII AKKEGRIIL+RD ELV++A+KLGI
Sbjct: 1 MKFIADMMLGRLARWLRLYGYDTRYGVEDDDEIISIAKKEGRIILTRDFELVKKARKLGI 60
Query: 61 KAIFIESNSIEGQIAQLMRLGIEFNELFPEGARCPKCNGIIVRVSKEEVKGKVPEKVYES 120
AI++ESNSIE Q+AQLM+ GI+F ELFPEGARCPKCNGIIV+V KEEVKGKVPEK+Y
Sbjct: 61 DAIYVESNSIEEQMAQLMKAGIKFGELFPEGARCPKCNGIIVKVKKEEVKGKVPEKIYRM 120
Query: 121 YDEFYVCTNCGQIYWPGRQWEEMVKMDKKFRTNKP 155
YDEFYVCTNCGQIYWPGRQWEEM+KMD+KF+ NKP
Sbjct: 121 YDEFYVCTNCGQIYWPGRQWEEMLKMDRKFKANKP 155
>pir||D72525 hypothetical protein APE2177 - Aeropyrum pernix (strain K1)
>gi|5105876|dbj|BAA81188.1| (AP000063) 174aa long
hypothetical protein [Aeropyrum pernix]
Length = 174
Score = 145 bits (363), Expect = 2e-34
Identities = 72/146 (49%), Positives = 98/146 (66%), Gaps = 3/146 (2%)
Query: 2 KFIADMMLGRLARWLRLYGYDTKYGIKDDD-EIIETAKKEGRIILSRDLELVERAKKLGI 60
+FI D MLG LA+WLRL GYDT Y D +I+ AK GRII++RD L +A+K+G+
Sbjct: 16 RFIVDSMLGSLAKWLRLMGYDTLYSRTYSDWQILRIAKSSGRIIVTRDRWLHSKARKMGL 75
Query: 61 KAIFIESNSIEGQIAQLM-RLGIEFNELFPEGARCPKCNGIIVRVSKEEVKGKVPEKVYE 119
K+I+IES S E ++A+L + G++ L PE +RCP CNG++ V KE V+ +VPE Y
Sbjct: 76 KSIYIESLSTEERLAELSAKAGLDLR-LEPERSRCPICNGVLEPVDKEAVRDRVPEATYR 134
Query: 120 SYDEFYVCTNCGQIYWPGRQWEEMVK 145
D+FYVCT CG++YW G W M K
Sbjct: 135 VVDKFYVCTRCGKVYWEGAHWRNMRK 160
>gi|11499026 A. fulgidus predicted coding region AF1431 [Archaeoglobus fulgidus]
>gi|7483624|pir||F69428 hypothetical protein AF1431 -
Archaeoglobus fulgidus >gi|2649142|gb|AAB89819.1|
(AE001004) A. fulgidus predicted coding region AF1431
[Archaeoglobus fulgidus]
Length = 159
Score = 106 bits (261), Expect = 2e-22
Identities = 60/161 (37%), Positives = 94/161 (58%), Gaps = 14/161 (8%)
Query: 1 MKFIADMMLGRLARWLRLYGYDT------KYGIKDDDEIIETAKKEGRIILSRDLELVER 54
MKF+ D MLGRL RWLR+ GYDT ++ ++D+ ++ + RI+L++D EL +
Sbjct: 4 MKFLTDRMLGRLTRWLRISGYDTVSVSELEFDEEEDEFMLRNLRD--RILLTKDRELYRK 61
Query: 55 AKKLGIKAIFIESNSIEGQIAQLMRLGIEFNELFPEGARCPKCNGIIVRVSKEEVKGKVP 114
+ K G KAI I S+S+EGQ+ +LM G++F + RC CN + + S+EE +
Sbjct: 62 SVKEGRKAILIRSDSLEGQMRELMERGVKFQIVMD---RCSLCNTPLRKPSREEAMEVIE 118
Query: 115 -EKVYESYDEF--YVCTNCGQIYWPGRQWEEMVKMDKKFRT 152
EK+ E EF + C C ++YW G W+ M + +KF +
Sbjct: 119 REKLSEDMLEFELWYCEKCRKLYWMGGHWKNMTRFLRKFES 159
>pir||B70934 hypothetical protein Rv0579 - Mycobacterium tuberculosis (strain
H37RV) >gi|2909638|emb|CAA17450.1| (AL021942)
hypothetical protein Rv0579 [Mycobacterium tuberculosis]
Length = 252
Score = 95.6 bits (234), Expect = 3e-19
Identities = 52/151 (34%), Positives = 87/151 (57%), Gaps = 4/151 (2%)
Query: 2 KFIADMMLGRLARWLRLYGYDTKYG-IKDDDEIIETAKKEGRIILSRDLELVERAKKLGI 60
+F+ D+ LG+LAR LRL G+DT++ DD + + + E RI+L+RD L++R +
Sbjct: 98 RFVVDVNLGQLARLLRLLGFDTRWSSAADDPTLADISLGEQRILLTRDRGLLKR--RAIT 155
Query: 61 KAIFIESNSIEGQIAQLMRLGIEFNELFPEGARCPKCNGIIVRVSKEEVKGKVPEKVYES 120
+F+ S E Q +++R ++ N +RC +CNG + VSK+EV G++
Sbjct: 156 HGLFVHSQHPEEQALEVLRR-LDLNGRLAPLSRCLRCNGELAAVSKDEVIGQLEPLTRRY 214
Query: 121 YDEFYVCTNCGQIYWPGRQWEEMVKMDKKFR 151
Y+ F C CG+IYWPG +V++ ++ R
Sbjct: 215 YESFSRCFGCGRIYWPGSHHARLVRLVERLR 245
>pir||D72332 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981308|gb|AAD35861.1|AE001747_4 (AE001747)
conserved hypothetical protein [Thermotoga maritima]
Length = 247
Score = 90.5 bits (221), Expect = 1e-17
Identities = 49/147 (33%), Positives = 86/147 (58%), Gaps = 3/147 (2%)
Query: 2 KFIADMMLGRLARWLRLYGYDTKYGIKDDDEIIETAKKEGRIILSRDLELVERAKKLGIK 61
+F+ D+ LG+LAR LR+ G++ +G + D+++ A K+ I+LSRD L++R K+L +
Sbjct: 98 RFVLDIHLGKLARLLRMLGFEAVFGEESDEKLCWMAVKKKAILLSRDTGLLKR-KEL-VF 155
Query: 62 AIFIESNSIEGQIAQLMRLGIEFNELFPEGARCPKCNGIIVRVSKEEVKGKVPEKVYESY 121
++ + + Q+ +++ + + RC +C + V KE VK +VP KVY +
Sbjct: 156 GYYVRNTDPKEQLVEVVER-YDLKKWMKPFTRCIECGVELEEVPKEAVKNRVPPKVYGFF 214
Query: 122 DEFYVCTNCGQIYWPGRQWEEMVKMDK 148
+EF C CG+IYW G ++ MV+ K
Sbjct: 215 NEFARCPVCGRIYWKGSHYDHMVEFIK 241
>emb|CAC12226.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 157
Score = 88.9 bits (217), Expect = 3e-17
Identities = 51/154 (33%), Positives = 82/154 (53%), Gaps = 16/154 (10%)
Query: 1 MKFIADMMLGRLARWLRLYGYDTKY--GIKDDDEIIETAKKEGRIILSRDLELVERAKKL 58
+K D MLG+LARW+RL GYD Y G DDEII ++ EGRII++RD + ++
Sbjct: 13 IKLTVDQMLGKLARWIRLMGYDVYYPSGTVPDDEIITKSRSEGRIIITRDYGMYQKYP-- 70
Query: 59 GIKAIFIESNSIEGQIAQ-LMRLGIEFNELFPEGARCPKCNGIIVRVSKEEVKGKVPEKV 117
+IF + I Q+ + + F RCP CNG +V+ ++ K+PE +
Sbjct: 71 --MSIFEPYDDINDQLRDFIAHFSSRMKDRF---MRCPVCNGRLVK-----LRSKIPEYL 120
Query: 118 YESYDEFYVCTNCGQIYWPGRQWEEMVKMDKKFR 151
++ + Y+CT C ++YW G + + + + R
Sbjct: 121 -RNHRDVYICTGCHKMYWKGSHYRRIYRKIENLR 153
>gb|AAK40540.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 176
Score = 84.3 bits (205), Expect = 7e-16
Identities = 50/162 (30%), Positives = 84/162 (50%), Gaps = 31/162 (19%)
Query: 2 KFIADMMLGRLARWLRLYGYDTKYGIKDDD-EIIETAKKEGRIILSRDLELVERAKKLGI 60
KF+ D MLG++ARWLR+ GYDT Y +D +I++ A+ + RII++RD + R+ K G+
Sbjct: 8 KFVVDSMLGKIARWLRIMGYDTLYSNDFEDWKILKIAETQKRIIITRDRGIYYRSLKRGL 67
Query: 61 KAIFI--ESNSIEGQIAQLMRLGIEFNELFPEGARCPKCNGIIVRVSKEEVKGKVPEKVY 118
I + +SN I+ +R I+ + + RCP+CN ++ ++S
Sbjct: 68 NCILLSPDSNIIQDLAFIALRSKIDLS-VNINATRCPQCNSVLSKLS------------- 113
Query: 119 ESYDEFYVCTNCGQIYWPGRQW-----------EEMVKMDKK 149
+ ++C C + YW GR W E+VK++ K
Sbjct: 114 ---ESMWLCPKCKKEYWKGRHWRTIEEIIIKANSELVKLETK 152
>pir||G72262 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981928|gb|AAD36438.1|AE001790_10 (AE001790)
conserved hypothetical protein [Thermotoga maritima]
Length = 164
Score = 80.8 bits (196), Expect = 8e-15
Identities = 48/138 (34%), Positives = 78/138 (55%), Gaps = 8/138 (5%)
Query: 1 MKFIADMMLGRLARWLRLYGYDTKYGIKDDD-EIIETAKKEGRIILSRDLELVERAKKLG 59
++F D L LA+ LR+ G D K ++ +++ +KEGRI+L++ L++ +K G
Sbjct: 4 VRFAVDASLVPLAKKLRILGVDVKVCYSEEPGKVLLICRKEGRILLTKKCSLIKFFEKYG 63
Query: 60 IKAIFIESNSIEGQIAQLMRLGIEFNELFPEGARCPKCNGIIVRVSKEEVKGKVPEKVYE 119
K +I+ L R+ IE +L PE ARCP CN ++ +EEV KVP V+
Sbjct: 64 QKVFYIKDEK------DLKRV-IEHFKLKPERARCPYCNRELLPTPREEVIEKVPLYVFL 116
Query: 120 SYDEFYVCTNCGQIYWPG 137
+ ++F C +CG+I+W G
Sbjct: 117 NAEKFSRCPSCGRIFWRG 134
>pir||G70395 hypothetical protein aq_1110 - Aquifex aeolicus
>gi|2983582|gb|AAC07154.1| (AE000723) putative protein
[Aquifex aeolicus]
Length = 151
Score = 79.6 bits (193), Expect = 2e-14
Identities = 52/152 (34%), Positives = 81/152 (53%), Gaps = 12/152 (7%)
Query: 2 KFIADMMLGRLARWLRLYGYDTKYGIKDDDEIIETAKKEGRIILSRDLELVERAKKLGIK 61
KF + L +LARWLR GY + IK ++ K +G + ++ ER KLGI+
Sbjct: 4 KFYLEENLEKLARWLRFLGYPA-HVIKGKVDL-NKIKPDG-VFITTSRRWYERLNKLGIR 60
Query: 62 AIFIESNSIEGQIAQLMRLGIEFNELFPEGAR--CPKCNGIIVRVSKEEVKGKVPEKVYE 119
A+ + + E Q+ + I+ L PE C C+ ++ VS+EEVK VPE+VY+
Sbjct: 61 AVLVPRHDFEVQLCTV----IKTLNLKPELKLNLCAYCSTPLLFVSREEVKESVPERVYK 116
Query: 120 SYDEFYVCTNCGQIYWPGRQWEEMVKMDKKFR 151
+F +C CG ++W G +E +M+KK R
Sbjct: 117 EATDFTLCPKCGAVFWKGSHFE---RMEKKLR 145
>dbj|BAB11227.1| (AB016884) gene_id:K16H17.2~pir||D72332~similar to unknown protein
[Arabidopsis thaliana]
Length = 505
Score = 71.0 bits (171), Expect = 7e-12
Identities = 48/158 (30%), Positives = 79/158 (49%), Gaps = 17/158 (10%)
Query: 2 KFIADMMLGRLARWLRLYGYDTKYGIK---DDDEIIETAKKEGRIILSRDLELVER---A 55
KF+ D+M+ LA+ LR G D D E+++ A KE R++L+RD +L+ A
Sbjct: 341 KFLLDVMVEGLAKHLRCVGIDAAIPHSKKPDSRELLDQAFKENRVLLTRDTKLLRHQDLA 400
Query: 56 KKLGIKAIFIESNSIEGQIAQLMRLGIEFNELFPEGARCPKCNG------IIVRVSKEEV 109
K + + N ++ + +L I N+L +RC KCNG + + + E
Sbjct: 401 KHQIYRVKSLLKNEQLLEVIETFQLKISGNQLM---SRCTKCNGKFIQKPLSIEEAIEAA 457
Query: 110 KG--KVPEKVYESYDEFYVCTNCGQIYWPGRQWEEMVK 145
KG ++P ++ EF+ C NC Q+YW G Q+ V+
Sbjct: 458 KGFQRIPNCLFNKNLEFWQCMNCHQLYWEGTQYHNAVQ 495
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.424
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56788836
Number of Sequences: 2977
Number of extensions: 2153215
Number of successful extensions: 6362
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 6341
Number of HSP's gapped (non-prelim): 11
length of query: 155
length of database: 189,106,746
effective HSP length: 50
effective length of query: 105
effective length of database: 159,182,396
effective search space: 16714151580
effective search space used: 16714151580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)