BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1510 (PAB1510) DE:Hypothetical protein
         (223 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75040 hypothetical protein PAB1510 - Pyrococcus abyssi (st...   466  e-130
pir||G71121 hypothetical protein PH0742 - Pyrococcus horikoshii ...   415  e-115
dbj|BAA85249.1| (AB026488) TBP-interacting protein [Pyrococcus k...   255  3e-67

>pir||D75040 hypothetical protein PAB1510 - Pyrococcus abyssi (strain Orsay)
           >gi|5458730|emb|CAB50217.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 223
           
 Score =  466 bits (1185), Expect = e-130
 Identities = 223/223 (100%), Positives = 223/223 (100%)

Query: 1   MTMKFESLDEKMKKVYAKVRSLDDFYWYIEDHRILGIHKKSGMRIRITIAESKEEADKLA 60
           MTMKFESLDEKMKKVYAKVRSLDDFYWYIEDHRILGIHKKSGMRIRITIAESKEEADKLA
Sbjct: 1   MTMKFESLDEKMKKVYAKVRSLDDFYWYIEDHRILGIHKKSGMRIRITIAESKEEADKLA 60

Query: 61  KEKEAGIDIFVVPGKGTFYVNNGAFIMSLKYLRPTVQDIADHIVWAGFRIVEEDGRLKQE 120
           KEKEAGIDIFVVPGKGTFYVNNGAFIMSLKYLRPTVQDIADHIVWAGFRIVEEDGRLKQE
Sbjct: 61  KEKEAGIDIFVVPGKGTFYVNNGAFIMSLKYLRPTVQDIADHIVWAGFRIVEEDGRLKQE 120

Query: 121 DFYEYLGGRLIEHLKQGLINGRDYVFWQFYKCKHCNKYVDIDSFAKHMKRHGEDVKEWSE 180
           DFYEYLGGRLIEHLKQGLINGRDYVFWQFYKCKHCNKYVDIDSFAKHMKRHGEDVKEWSE
Sbjct: 121 DFYEYLGGRLIEHLKQGLINGRDYVFWQFYKCKHCNKYVDIDSFAKHMKRHGEDVKEWSE 180

Query: 181 ERYEVLEINFTDKKVYNKFGEEVSLDEFSEEAKDFIKESFEGE 223
           ERYEVLEINFTDKKVYNKFGEEVSLDEFSEEAKDFIKESFEGE
Sbjct: 181 ERYEVLEINFTDKKVYNKFGEEVSLDEFSEEAKDFIKESFEGE 223


>pir||G71121 hypothetical protein PH0742 - Pyrococcus horikoshii
           >gi|3257150|dbj|BAA29833.1| (AP000003) 256aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 256
           
 Score =  415 bits (1055), Expect = e-115
 Identities = 187/222 (84%), Positives = 212/222 (95%)

Query: 1   MTMKFESLDEKMKKVYAKVRSLDDFYWYIEDHRILGIHKKSGMRIRITIAESKEEADKLA 60
           M MKFE LDEKMKKVYAKVR+LDDFYWYIEDH+ILGIHKKSGMRIRI IA S+EEADKLA
Sbjct: 35  MHMKFEELDEKMKKVYAKVRTLDDFYWYIEDHQILGIHKKSGMRIRIRIAGSREEADKLA 94

Query: 61  KEKEAGIDIFVVPGKGTFYVNNGAFIMSLKYLRPTVQDIADHIVWAGFRIVEEDGRLKQE 120
           +EK+ GID+FV+PGKGTFYVNNGAFIMSLK+LRPT+QDIADHIVWAGF++V+EDGRLKQE
Sbjct: 95  QEKDVGIDLFVIPGKGTFYVNNGAFIMSLKFLRPTIQDIADHIVWAGFKVVDEDGRLKQE 154

Query: 121 DFYEYLGGRLIEHLKQGLINGRDYVFWQFYKCKHCNKYVDIDSFAKHMKRHGEDVKEWSE 180
           D YEYLGGRLIEHLKQG+ING+DYVFWQFYKCK+CNKY+DID+FA+HM++HGEDVKEW E
Sbjct: 155 DIYEYLGGRLIEHLKQGMINGKDYVFWQFYKCKYCNKYIDIDNFARHMRKHGEDVKEWGE 214

Query: 181 ERYEVLEINFTDKKVYNKFGEEVSLDEFSEEAKDFIKESFEG 222
           ERYEVLEI+F DKKVYNKFGEE+ LD F+EEA+DFIK+SFEG
Sbjct: 215 ERYEVLEISFVDKKVYNKFGEEIPLDNFTEEAQDFIKDSFEG 256


>dbj|BAA85249.1| (AB026488) TBP-interacting protein [Pyrococcus kodakaraensis]
           Length = 224
           
 Score =  255 bits (645), Expect = 3e-67
 Identities = 111/218 (50%), Positives = 157/218 (71%)

Query: 5   FESLDEKMKKVYAKVRSLDDFYWYIEDHRILGIHKKSGMRIRITIAESKEEADKLAKEKE 64
           +  L    KKVY +VR LDD++W IE   I GIHKKS +++ I +A+++EEAD LA +  
Sbjct: 2   YAELSPGTKKVYTQVRYLDDYHWEIEGSTITGIHKKSNVKVVIDVAKNREEADSLAGKDV 61

Query: 65  AGIDIFVVPGKGTFYVNNGAFIMSLKYLRPTVQDIADHIVWAGFRIVEEDGRLKQEDFYE 124
            GI I  +P  G FY+ NG+F+++ +YL+ T+ DI DHIVW+GF++VE++G+L QED YE
Sbjct: 62  NGIHIVAIPDNGVFYIKNGSFVLTYRYLKATLADINDHIVWSGFKVVEDNGKLVQEDVYE 121

Query: 125 YLGGRLIEHLKQGLINGRDYVFWQFYKCKHCNKYVDIDSFAKHMKRHGEDVKEWSEERYE 184
           YLG  L+ H+K   + G+DY+FWQFYKC+ C KYVDI++   H++ HG  + E SEE YE
Sbjct: 122 YLGAALVNHIKNNALAGQDYIFWQFYKCEECGKYVDIENLEAHLREHGIKLHEKSEEHYE 181

Query: 185 VLEINFTDKKVYNKFGEEVSLDEFSEEAKDFIKESFEG 222
           V E+NF + KV++KFG EV +D+FS EA++FIKE   G
Sbjct: 182 VFELNFREGKVFDKFGGEVPMDKFSSEAREFIKEVLSG 219


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.140    0.415 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89347795
Number of Sequences: 2977
Number of extensions: 4016058
Number of successful extensions: 12232
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12229
Number of HSP's gapped (non-prelim): 3
length of query: 223
length of database: 189,106,746
effective HSP length: 53
effective length of query: 170
effective length of database: 157,386,935
effective search space: 26755778950
effective search space used: 26755778950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)