BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1512 (PAB1512) DE:Hypothetical protein
         (124 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75040 hypothetical protein PAB1512 - Pyrococcus abyssi (st...   239  7e-63
pir||A71122 hypothetical protein PH0744 - Pyrococcus horikoshii ...   220  5e-57

>pir||B75040 hypothetical protein PAB1512 - Pyrococcus abyssi (strain Orsay)
           >gi|5458728|emb|CAB50215.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 124
           
 Score =  239 bits (604), Expect = 7e-63
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 1   MTDKGLAKFGDSLINFLYSLALTEFLGKPTGDRVPNASLAIALDLAGLSRNLRRMDKHAK 60
           MTDKGLAKFGDSLINFLYSLALTEFLGKPTGDRVPNASLAIALDLAGLSRNLRRMDKHAK
Sbjct: 1   MTDKGLAKFGDSLINFLYSLALTEFLGKPTGDRVPNASLAIALDLAGLSRNLRRMDKHAK 60

Query: 61  GDYAEALIAEAWLKGLITEREAVEIIKANLSEEVLDFSKKKEAIGKALAPLLKVIAERIT 120
           GDYAEALIAEAWLKGLITEREAVEIIKANLSEEVLDFSKKKEAIGKALAPLLKVIAERIT
Sbjct: 61  GDYAEALIAEAWLKGLITEREAVEIIKANLSEEVLDFSKKKEAIGKALAPLLKVIAERIT 120

Query: 121 SSRA 124
           SSRA
Sbjct: 121 SSRA 124


>pir||A71122 hypothetical protein PH0744 - Pyrococcus horikoshii
           >gi|3257152|dbj|BAA29835.1| (AP000003) 124aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 124
           
 Score =  220 bits (554), Expect = 5e-57
 Identities = 110/123 (89%), Positives = 120/123 (97%)

Query: 1   MTDKGLAKFGDSLINFLYSLALTEFLGKPTGDRVPNASLAIALDLAGLSRNLRRMDKHAK 60
           M DKGLAKFGDSLINFLYSLALTEFLGKPTGDRVPNASLAIALDLAGLS+ LRRMDKHAK
Sbjct: 1   MIDKGLAKFGDSLINFLYSLALTEFLGKPTGDRVPNASLAIALDLAGLSKGLRRMDKHAK 60

Query: 61  GDYAEALIAEAWLKGLITEREAVEIIKANLSEEVLDFSKKKEAIGKALAPLLKVIAERIT 120
           GDYAEALIA+AWL+G+I+EREA+EIIKANLS +VLDFSKKKEAIGKALAPLL+V+AER+T
Sbjct: 61  GDYAEALIAQAWLEGVISEREAIEIIKANLSVDVLDFSKKKEAIGKALAPLLRVVAERLT 120

Query: 121 SSR 123
           SSR
Sbjct: 121 SSR 123


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.134    0.360 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39332020
Number of Sequences: 2977
Number of extensions: 1388023
Number of successful extensions: 3739
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3737
Number of HSP's gapped (non-prelim): 2
length of query: 124
length of database: 189,106,746
effective HSP length: 58
effective length of query: 66
effective length of database: 154,394,500
effective search space: 10190037000
effective search space used: 10190037000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 160 (66.7 bits)