BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1513 (PAB1513) DE:Hypothetical protein
         (380 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75039 hypothetical protein PAB1513 - Pyrococcus abyssi (st...   772  0.0
pir||B71122 hypothetical protein PH0745 - Pyrococcus horikoshii ...   665  0.0
gb|AAK42598.1| Conserved hypothetical protein [Sulfolobus solfat...   300  2e-80
pir||F72567 hypothetical protein APE1824 - Aeropyrum pernix (str...   245  8e-64
gi|11499091 A. fulgidus predicted coding region AF1496 [Archaeog...   237  1e-61
pir||E69158 hypothetical protein MTH448 - Methanobacterium therm...   206  3e-52
emb|CAC12222.1| (AL445066) conserved hypothetical protein [Therm...   194  1e-48
pir||F69158 hypothetical protein MTH449 - Methanobacterium therm...    76  5e-13

>pir||H75039 hypothetical protein PAB1513 - Pyrococcus abyssi (strain Orsay)
           >gi|5458726|emb|CAB50213.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 380
           
 Score =  772 bits (1972), Expect = 0.0
 Identities = 380/380 (100%), Positives = 380/380 (100%)

Query: 1   MMRTGVAELPLHTGHVPPWLANRMRKLSKIVLKLLVEEYGTKGLLERLADPVWFQAFNNL 60
           MMRTGVAELPLHTGHVPPWLANRMRKLSKIVLKLLVEEYGTKGLLERLADPVWFQAFNNL
Sbjct: 1   MMRTGVAELPLHTGHVPPWLANRMRKLSKIVLKLLVEEYGTKGLLERLADPVWFQAFNNL 60

Query: 61  IGMDWDSSGSTTVTTGIIKEALNELDLGVKVAGGKGKKSRGTPDEIRLISEKFELNPEKY 120
           IGMDWDSSGSTTVTTGIIKEALNELDLGVKVAGGKGKKSRGTPDEIRLISEKFELNPEKY
Sbjct: 61  IGMDWDSSGSTTVTTGIIKEALNELDLGVKVAGGKGKKSRGTPDEIRLISEKFELNPEKY 120

Query: 121 VTISRLVAKVDNVALQAGYQLYHHTFFLDEEGNWAVIQQGMNPRNKLARRYHWFNADLDK 180
           VTISRLVAKVDNVALQAGYQLYHHTFFLDEEGNWAVIQQGMNPRNKLARRYHWFNADLDK
Sbjct: 121 VTISRLVAKVDNVALQAGYQLYHHTFFLDEEGNWAVIQQGMNPRNKLARRYHWFNADLDK 180

Query: 181 LILPHKGISGIKGSFALNTVDKDTEKFQKSLIEIAQEGKRVEKDLEVVKAIIKGYSVFYK 240
           LILPHKGISGIKGSFALNTVDKDTEKFQKSLIEIAQEGKRVEKDLEVVKAIIKGYSVFYK
Sbjct: 181 LILPHKGISGIKGSFALNTVDKDTEKFQKSLIEIAQEGKRVEKDLEVVKAIIKGYSVFYK 240

Query: 241 PRDVNVKEVYRRYESLGKLELNVRALEFIKELEVKDYQTFLLIKGLGPSTLRALSLVAEL 300
           PRDVNVKEVYRRYESLGKLELNVRALEFIKELEVKDYQTFLLIKGLGPSTLRALSLVAEL
Sbjct: 241 PRDVNVKEVYRRYESLGKLELNVRALEFIKELEVKDYQTFLLIKGLGPSTLRALSLVAEL 300

Query: 301 IYDVKPSWRDPVTHPPDPFKYAYALGGKDRVPFRIEKGTYDDLINFLQKLSETGNKEILK 360
           IYDVKPSWRDPVTHPPDPFKYAYALGGKDRVPFRIEKGTYDDLINFLQKLSETGNKEILK
Sbjct: 301 IYDVKPSWRDPVTHPPDPFKYAYALGGKDRVPFRIEKGTYDDLINFLQKLSETGNKEILK 360

Query: 361 VVKKISEKWKFPEEEKVPTF 380
           VVKKISEKWKFPEEEKVPTF
Sbjct: 361 VVKKISEKWKFPEEEKVPTF 380


>pir||B71122 hypothetical protein PH0745 - Pyrococcus horikoshii
           >gi|3257153|dbj|BAA29836.1| (AP000003) 380aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 380
           
 Score =  665 bits (1697), Expect = 0.0
 Identities = 315/380 (82%), Positives = 352/380 (91%)

Query: 1   MMRTGVAELPLHTGHVPPWLANRMRKLSKIVLKLLVEEYGTKGLLERLADPVWFQAFNNL 60
           MMRTG+AELPLHTGHVP WLA RM+KL+ IVLKLL+EEYGTKGLLERLADPVWFQAFNNL
Sbjct: 1   MMRTGIAELPLHTGHVPLWLATRMKKLAGIVLKLLIEEYGTKGLLERLADPVWFQAFNNL 60

Query: 61  IGMDWDSSGSTTVTTGIIKEALNELDLGVKVAGGKGKKSRGTPDEIRLISEKFELNPEKY 120
           IGMDWDSSGSTTVTTGIIKEALNELDLGVKVAGGKGK SR TP+EI+ I+EKFEL+P +Y
Sbjct: 61  IGMDWDSSGSTTVTTGIIKEALNELDLGVKVAGGKGKNSRKTPEEIKGIAEKFELDPGEY 120

Query: 121 VTISRLVAKVDNVALQAGYQLYHHTFFLDEEGNWAVIQQGMNPRNKLARRYHWFNADLDK 180
           + +SRLVAKVDNVALQAGYQLYHHTFFLDEEGNWAV+QQGMN + KLARRYHWFN+DL  
Sbjct: 121 IKVSRLVAKVDNVALQAGYQLYHHTFFLDEEGNWAVVQQGMNVKEKLARRYHWFNSDLKD 180

Query: 181 LILPHKGISGIKGSFALNTVDKDTEKFQKSLIEIAQEGKRVEKDLEVVKAIIKGYSVFYK 240
           L  PH GISGI+  FALNTVDKD  +FQ++++EIAQEG+RV +DLE VKA++KGY+VFYK
Sbjct: 181 LENPHSGISGIRSDFALNTVDKDMREFQRTVVEIAQEGRRVMRDLETVKAMVKGYAVFYK 240

Query: 241 PRDVNVKEVYRRYESLGKLELNVRALEFIKELEVKDYQTFLLIKGLGPSTLRALSLVAEL 300
           PRDV+VKE+Y RYESLGKLELN RALEF++ELE+KDY TFLLIKG+GPSTLRALSLVAEL
Sbjct: 241 PRDVDVKEIYERYESLGKLELNARALEFMRELEIKDYSTFLLIKGIGPSTLRALSLVAEL 300

Query: 301 IYDVKPSWRDPVTHPPDPFKYAYALGGKDRVPFRIEKGTYDDLINFLQKLSETGNKEILK 360
           IYDVKPSWRDPVTHPPDPFK+AYALGGKDRVPFR+EK TYDDLINFL KLSE+GNK +LK
Sbjct: 301 IYDVKPSWRDPVTHPPDPFKFAYALGGKDRVPFRVEKETYDDLINFLGKLSESGNKYLLK 360

Query: 361 VVKKISEKWKFPEEEKVPTF 380
            VK+ISEKWKFPE+EKVPTF
Sbjct: 361 AVKRISEKWKFPEKEKVPTF 380


>gb|AAK42598.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 379
           
 Score =  300 bits (759), Expect = 2e-80
 Identities = 154/375 (41%), Positives = 243/375 (64%), Gaps = 16/375 (4%)

Query: 5   GVAELPLHTGHVPPWLANRMRKLSKIVLKLLVEEYGTKGLLERLADPVWFQAFNNLIGMD 64
           G+A+LPLHTGHVPPWL   M++L+K ++++++ E G + ++ER ++P+WFQ FNN+IGMD
Sbjct: 5   GIADLPLHTGHVPPWLVPIMKRLAKAIVEIMILELGPQKVVERFSNPLWFQGFNNIIGMD 64

Query: 65  WDSSGSTTVTTGIIKEALNELDLGVKVAGGKGKKSRGTPDEIRLISEKFELNPEKYVTIS 124
           WDSSGSTTVT GI+K+  N    G  V GGKGK +   PDE+ ++   F+++  K   IS
Sbjct: 65  WDSSGSTTVTLGILKDITNPKVHGFAVLGGKGKNALKVPDEVDMLI--FDVDKNKIKNIS 122

Query: 125 RLVAKVDNVALQAGYQLYHHTFFLDEEGNWAVIQQGMNPRNKLARRYHWFNADLDKLILP 184
           ++VAKVD+  +Q G+QLYHHT  + E+G W++IQQGMN   K ARRYHW   D + ++ P
Sbjct: 123 KIVAKVDSTLVQDGHQLYHHTMLVTEDGKWSIIQQGMNLEIKFARRYHWKETD-NFVVEP 181

Query: 185 HKGISGIKGSFALNTVDKDTEKFQKSLIEIAQEG-KRVEKDLEVVKAIIKGYS---VFYK 240
           H  ISGIK +  +N +D+D ++ +K ++++ +E   ++        A++KG S   ++ K
Sbjct: 182 HSAISGIKTNVVVNVIDRDKDRTRKLILDLLRENPNKIVSLYTQAMAMLKGQSTLDMWIK 241

Query: 241 PRDVNVKEVYRRYESLGKLELNVRALEFIKELEVKDYQTF--LLIKGLGPSTLRALSLVA 298
              +       R   +  +++N R  + ++E+   +  TF   LI GLGPST RAL L+A
Sbjct: 242 GGSIAFVSKEARLIYMKPVDVN-RIKQVLREMYESNPLTFEEALINGLGPSTARALYLIA 300

Query: 299 ELIYDVKPSWRDPVTHPPDPFKYAYALGGKDRVPFRIEKGTYDDLINFLQ------KLSE 352
           +LIY+  PS++DP+ +P DPFKYA+A+GGKD +P+ + +    ++I  L+      KL E
Sbjct: 301 DLIYNEPPSYKDPMNYPYDPFKYAFAIGGKDGIPYPVNRKAAWEVIYTLEDFITRAKLEE 360

Query: 353 TGNKEILKVVKKISE 367
              +  L+ +K++S+
Sbjct: 361 GDKRLALRKLKELSK 375


>pir||F72567 hypothetical protein APE1824 - Aeropyrum pernix (strain K1)
           >gi|5105514|dbj|BAA80827.1| (AP000062) 385aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 385
           
 Score =  245 bits (618), Expect = 8e-64
 Identities = 137/378 (36%), Positives = 214/378 (56%), Gaps = 19/378 (5%)

Query: 4   TGVAELPLHTGHVPPWLANRMRKLSKIVLKLLVEEYGTKGLLERLADPVWFQAFNNLIGM 63
           TGVA+LPLH+G VPPW+   M +L++ + + +VE +G   ++  LADP WFQAFNN IGM
Sbjct: 2   TGVADLPLHSGKVPPWMLKVMERLARSIARAIVEIHGPDAVVRGLADPYWFQAFNNAIGM 61

Query: 64  DWDSSGSTTVTTGIIKEALNELDLGVKVAGGKGKKSRGTPDEIRLISEKFELNPEKYVTI 123
           DWDSSGSTTV   ++++     DLG  V GGKG++ RG   E+  ++++  ++  K +  
Sbjct: 62  DWDSSGSTTVLLAVLRKVSLSEDLGFIVVGGKGRRMRGIDSEVEALADRVGIDASKLLGF 121

Query: 124 SRLVAKVDNVALQAGYQLYHHTFFLDEEGNWAVIQQGMNPRNKLARRYHWFNADLDKLIL 183
           S+   +V NV LQ GY  Y H     E G    +QQGMN    L+RRYH    D + +  
Sbjct: 122 SQAAGRVSNVLLQDGYSPYIHAVVASETGLMVAVQQGMNVEAGLSRRYH---VDRESVEE 178

Query: 184 PHKGISGI-KGSFALNTVDKDTEKFQKSLIEIAQEG-KRVEKDLEVVKAIIKGYSVFYKP 241
           P +G+SGI   S  LN V  ++++ +K  +++A+EG  R+E+ +     ++ G       
Sbjct: 179 PFRGVSGILSHSGVLNAVASESKEARKLYVDLAREGASRIERMVLEASRMVSGAPTLLDY 238

Query: 242 RDVNVKEVYRR-----------YESLGKLELNVRALEFIKELEVKDYQTFLLIKGLGPST 290
            D +    +R            Y+ +       + LE + +    D Q  L   GL P  
Sbjct: 239 MDRHPGASHRNASGGPRSSKPYYKPVPIDSRTRKYLEMLADNPPVDEQDLLTAPGLTPKV 298

Query: 291 LRALSLVAELIYDVKPSWRDPVTHPPDPFKYAYALGGKDRVPFRIEKGTYDDLINFLQ-- 348
           +RAL+LVA++IY V  S RDPV+ P +PF YAY++GGKD VP+R ++ T + ++  L+  
Sbjct: 299 VRALALVADIIYGVPTSHRDPVSTPLNPFVYAYSVGGKDGVPYRFDRRTAERVVLALEEA 358

Query: 349 -KLSETGNKEILKVVKKI 365
            +L+  G  E L+ ++++
Sbjct: 359 VELARLGRDEKLRALRRL 376


>gi|11499091 A. fulgidus predicted coding region AF1496 [Archaeoglobus fulgidus]
           >gi|7483642|pir||G69436 hypothetical protein AF1496 -
           Archaeoglobus fulgidus >gi|2649076|gb|AAB89758.1|
           (AE000999) A. fulgidus predicted coding region AF1496
           [Archaeoglobus fulgidus]
           Length = 353
           
 Score =  237 bits (599), Expect = 1e-61
 Identities = 134/363 (36%), Positives = 214/363 (58%), Gaps = 31/363 (8%)

Query: 9   LPLHTGHVPPWLANRMRKLSKIVLKLLVEEYGTKGLLERLADPVWFQAFNNLIGMDWDSS 68
           LPLH G  P WL +RM+KL+K ++KL+V EYG +  LERL++P++FQ+ +N++G DW+SS
Sbjct: 6   LPLHHGKAPHWLLSRMKKLAKPIVKLIVLEYGEREFLERLSNPIFFQSLSNVLGFDWNSS 65

Query: 69  GSTTVTTGIIKEALNELDLGVKVAGGKGKKSRGTPDEIRLISEKFELNPEKYVTISRLVA 128
           G TTV TG++K  +N  +  +++AGGKG  +  TP+EI   SE+   + EK V  SRL A
Sbjct: 66  GVTTVLTGVLKAVINNEEFDIRIAGGKGGNALKTPEEIMNYSEQIGADGEKLVEFSRLAA 125

Query: 129 KVDNVALQAGYQLYHHTFFLDEEGNWAVIQQGMNPRNKLARRYHW-FNADLDKLILPHKG 187
           K DN AL  GY LYHH         + VIQQGMN   ++ARRYHW   + + +L   H+G
Sbjct: 126 KADNAALIDGYSLYHHAVIFTPR-YFTVIQQGMNETERMARRYHWNVYSSVPELENVHEG 184

Query: 188 -ISGIKGSFALNTVDKDTEKFQKSLIEIAQEGKRVEKDLEVVKAIIKGYSVFYKPRDVNV 246
            I+  + +  +N +   +   ++  ++I ++G    +D E + ++++       P+ ++ 
Sbjct: 185 IITERRENEVVNMLSDISRDAKRLCVDIVRDGS-FRRDYERMISVLRWRKGLRVPKKLDW 243

Query: 247 KEVYRRYESLGKLELNVRALEFIKELEVKDYQTFLLIKGLGPSTLRALSLVAELIYDVKP 306
           K V R Y                  L+ + ++  LLI+G G  T+RAL+LVAE+IY+ + 
Sbjct: 244 KVVERAY-----------------NLQPERFEELLLIRGFGRETIRALALVAEIIYNTE- 285

Query: 307 SWRDPVTHPPDPFKYAYALGGKDRVPFRIEKGTYDDLINFLQ---KLSETGNKEILKVVK 363
                     DP KY +A+GGKD VPF + +  YD++I F++   K +E G+ E  K+++
Sbjct: 286 ------YDKTDPAKYCFAVGGKDGVPFPVRRDIYDEIIEFMRETVKQAEIGDFEKKKMLE 339

Query: 364 KIS 366
           ++S
Sbjct: 340 RLS 342


>pir||E69158 hypothetical protein MTH448 - Methanobacterium thermoautotrophicum
           (strain Delta H) >gi|2621515|gb|AAB84954.1| (AE000829)
           unknown [Methanobacterium thermoautotrophicum]
           Length = 231
           
 Score =  206 bits (520), Expect = 3e-52
 Identities = 95/190 (50%), Positives = 130/190 (68%), Gaps = 1/190 (0%)

Query: 1   MMRTGVAELPLHTGHVPPWLANRMRKLSKIVLKLLVEEYGTKGLLERLADPVWFQAFNNL 60
           M RTG+A LPLH GH P WL  RM +LS  + ++++EEYGT   + R++DP WFQAF+ +
Sbjct: 5   MRRTGIANLPLHGGHPPAWLMRRMIELSGAITEVIIEEYGTSEFISRISDPFWFQAFSCV 64

Query: 61  IGMDWDSSGSTTVTTGIIKEALNELDLGVKVAGGKGKKSRGTPDEIRLISEKFELNPEKY 120
           IG DW SSG+TT T G +K AL+    G+ VAGGKG+KSR TP E++  +E F+L+ E  
Sbjct: 65  IGFDWHSSGTTTTTCGALKSALDPEVHGIMVAGGKGRKSRRTPSELQAAAEIFDLDAEGL 124

Query: 121 VTISRLVAKVDNVALQAGYQLYHHTFFLDEEGNWAVIQQGMNPRNKLARRYHWFNADLDK 180
           V  SR+ A+VD   +Q G+ LY HTF +D +G WAV+QQG++P    ARRYHW  + + +
Sbjct: 125 VYASRISARVDGNCIQDGFNLYQHTFLVDSDGEWAVVQQGLDPHGGYARRYHWLGSGVGE 184

Query: 181 LI-LPHKGIS 189
            +  PH GIS
Sbjct: 185 YVESPHSGIS 194


>emb|CAC12222.1| (AL445066) conserved hypothetical protein [Thermoplasma
           acidophilum]
           Length = 363
           
 Score =  194 bits (489), Expect = 1e-48
 Identities = 122/353 (34%), Positives = 182/353 (50%), Gaps = 25/353 (7%)

Query: 1   MMRTGVAELPLHTGHVPPWLANRMRKLSKIVLKLLVEEYGTKGLLERLADPVWFQAFNNL 60
           M R G++ LPLH GH P +L  R  KLS I+ +++V+ YG   L+ RLADP WF + + +
Sbjct: 3   MERRGISALPLHYGHPPEYLFKRAVKLSGIMAEIIVDTYGQGELIRRLADPFWFHSLSLV 62

Query: 61  IGMDWDSSGSTTVTTGIIKEALNELDLGVKVAGGKGKKSRGTPDEIRLISEK--FELNPE 118
            G DW+SSG+T  T   +KE L+  DLGVKV GGK         ++    E    + + +
Sbjct: 63  TGFDWNSSGTTVFTLSALKEYLSTRDLGVKVCGGKASAMADMRADLLSSVETGILKEDDK 122

Query: 119 KYV-TISRLVAKVDNVALQAGYQLYHHTFFLDEEGNWAVIQQGMNPRNKLARRYHWFNAD 177
           +YV   +R +AK+DN  LQ GY LY     + + G  AVIQQGMN  +++ARRYHW   +
Sbjct: 123 EYVYENARRIAKIDNSLLQDGYDLYMQFVVVSDRGRHAVIQQGMNSEDRMARRYHWLIGN 182

Query: 178 LDKLILPHKGISGIKGSFALNTVDKDTEKFQKSLIEIAQEGKRVEKDLEVVKAIIKGYSV 237
               +    G+S  K S  +  +     +  +S I  +     V +     ++ +  +S+
Sbjct: 183 ERVDVEGRYGLSADKTSLNVLDLSATESRDNRSAIVASVREGEVWRFRSGAQSTLDNFSL 242

Query: 238 FYKPRDVNVKEVYRRYESLGKLELNVRALEFIKELEVKDYQTFLLIKGLGPSTLRALSLV 297
            +      V               N + L  + E  V D++   + KG+G STLRALS +
Sbjct: 243 PFLDLSGRV---------------NWKKLRDLYEYGVDDFEKIYMEKGIGKSTLRALSYI 287

Query: 298 AELIYDVKPSWRDPVTHPPDPFKYAYALGGKDRVPFRIEKGTYDDLINFLQKL 350
           AE+IY  K S+RDPV       K+++A+GGKD +P  +    YD  I F   L
Sbjct: 288 AEVIYGPKASFRDPV-------KFSFAVGGKDGIPKPVNTYDYDRAIEFFSDL 333


>pir||F69158 hypothetical protein MTH449 - Methanobacterium thermoautotrophicum
           (strain Delta H) >gi|2621516|gb|AAB84955.1| (AE000829)
           unknown [Methanobacterium thermoautotrophicum]
           Length = 120
           
 Score = 76.5 bits (185), Expect = 5e-13
 Identities = 39/110 (35%), Positives = 65/110 (58%), Gaps = 10/110 (9%)

Query: 260 ELNVRALEFIKELEVKDYQTFLLIKGLGPSTLRALSLVAELIYDVKPSWRDPVTHPPDPF 319
           E ++  LE   E++  DY+  +++ G G   +RAL+LVA+L++  + SWRDPV       
Sbjct: 14  ERDMAVLERAYEIQPADYEELVMLSGFGAKKVRALALVADLVHGERASWRDPV------- 66

Query: 320 KYAYALGGKDRVPFRIEKGTYDDLINFLQKLSETG---NKEILKVVKKIS 366
           KY+YA GGKD  P+ +++ TYD  + +L+   E      KE L+ +K ++
Sbjct: 67  KYSYAHGGKDGYPYPVDRETYDCTVEYLRSAIEDAKIDKKERLRALKSLN 116


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.139    0.405 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144397170
Number of Sequences: 2977
Number of extensions: 6131837
Number of successful extensions: 15506
Number of sequences better than 1.0e-10: 8
Number of HSP's better than  0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15488
Number of HSP's gapped (non-prelim): 8
length of query: 380
length of database: 189,106,746
effective HSP length: 55
effective length of query: 325
effective length of database: 156,189,961
effective search space: 50761737325
effective search space used: 50761737325
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)