BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1513 (PAB1513) DE:Hypothetical protein
(380 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75039 hypothetical protein PAB1513 - Pyrococcus abyssi (st... 772 0.0
pir||B71122 hypothetical protein PH0745 - Pyrococcus horikoshii ... 665 0.0
gb|AAK42598.1| Conserved hypothetical protein [Sulfolobus solfat... 300 2e-80
pir||F72567 hypothetical protein APE1824 - Aeropyrum pernix (str... 245 8e-64
gi|11499091 A. fulgidus predicted coding region AF1496 [Archaeog... 237 1e-61
pir||E69158 hypothetical protein MTH448 - Methanobacterium therm... 206 3e-52
emb|CAC12222.1| (AL445066) conserved hypothetical protein [Therm... 194 1e-48
pir||F69158 hypothetical protein MTH449 - Methanobacterium therm... 76 5e-13
>pir||H75039 hypothetical protein PAB1513 - Pyrococcus abyssi (strain Orsay)
>gi|5458726|emb|CAB50213.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 380
Score = 772 bits (1972), Expect = 0.0
Identities = 380/380 (100%), Positives = 380/380 (100%)
Query: 1 MMRTGVAELPLHTGHVPPWLANRMRKLSKIVLKLLVEEYGTKGLLERLADPVWFQAFNNL 60
MMRTGVAELPLHTGHVPPWLANRMRKLSKIVLKLLVEEYGTKGLLERLADPVWFQAFNNL
Sbjct: 1 MMRTGVAELPLHTGHVPPWLANRMRKLSKIVLKLLVEEYGTKGLLERLADPVWFQAFNNL 60
Query: 61 IGMDWDSSGSTTVTTGIIKEALNELDLGVKVAGGKGKKSRGTPDEIRLISEKFELNPEKY 120
IGMDWDSSGSTTVTTGIIKEALNELDLGVKVAGGKGKKSRGTPDEIRLISEKFELNPEKY
Sbjct: 61 IGMDWDSSGSTTVTTGIIKEALNELDLGVKVAGGKGKKSRGTPDEIRLISEKFELNPEKY 120
Query: 121 VTISRLVAKVDNVALQAGYQLYHHTFFLDEEGNWAVIQQGMNPRNKLARRYHWFNADLDK 180
VTISRLVAKVDNVALQAGYQLYHHTFFLDEEGNWAVIQQGMNPRNKLARRYHWFNADLDK
Sbjct: 121 VTISRLVAKVDNVALQAGYQLYHHTFFLDEEGNWAVIQQGMNPRNKLARRYHWFNADLDK 180
Query: 181 LILPHKGISGIKGSFALNTVDKDTEKFQKSLIEIAQEGKRVEKDLEVVKAIIKGYSVFYK 240
LILPHKGISGIKGSFALNTVDKDTEKFQKSLIEIAQEGKRVEKDLEVVKAIIKGYSVFYK
Sbjct: 181 LILPHKGISGIKGSFALNTVDKDTEKFQKSLIEIAQEGKRVEKDLEVVKAIIKGYSVFYK 240
Query: 241 PRDVNVKEVYRRYESLGKLELNVRALEFIKELEVKDYQTFLLIKGLGPSTLRALSLVAEL 300
PRDVNVKEVYRRYESLGKLELNVRALEFIKELEVKDYQTFLLIKGLGPSTLRALSLVAEL
Sbjct: 241 PRDVNVKEVYRRYESLGKLELNVRALEFIKELEVKDYQTFLLIKGLGPSTLRALSLVAEL 300
Query: 301 IYDVKPSWRDPVTHPPDPFKYAYALGGKDRVPFRIEKGTYDDLINFLQKLSETGNKEILK 360
IYDVKPSWRDPVTHPPDPFKYAYALGGKDRVPFRIEKGTYDDLINFLQKLSETGNKEILK
Sbjct: 301 IYDVKPSWRDPVTHPPDPFKYAYALGGKDRVPFRIEKGTYDDLINFLQKLSETGNKEILK 360
Query: 361 VVKKISEKWKFPEEEKVPTF 380
VVKKISEKWKFPEEEKVPTF
Sbjct: 361 VVKKISEKWKFPEEEKVPTF 380
>pir||B71122 hypothetical protein PH0745 - Pyrococcus horikoshii
>gi|3257153|dbj|BAA29836.1| (AP000003) 380aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 380
Score = 665 bits (1697), Expect = 0.0
Identities = 315/380 (82%), Positives = 352/380 (91%)
Query: 1 MMRTGVAELPLHTGHVPPWLANRMRKLSKIVLKLLVEEYGTKGLLERLADPVWFQAFNNL 60
MMRTG+AELPLHTGHVP WLA RM+KL+ IVLKLL+EEYGTKGLLERLADPVWFQAFNNL
Sbjct: 1 MMRTGIAELPLHTGHVPLWLATRMKKLAGIVLKLLIEEYGTKGLLERLADPVWFQAFNNL 60
Query: 61 IGMDWDSSGSTTVTTGIIKEALNELDLGVKVAGGKGKKSRGTPDEIRLISEKFELNPEKY 120
IGMDWDSSGSTTVTTGIIKEALNELDLGVKVAGGKGK SR TP+EI+ I+EKFEL+P +Y
Sbjct: 61 IGMDWDSSGSTTVTTGIIKEALNELDLGVKVAGGKGKNSRKTPEEIKGIAEKFELDPGEY 120
Query: 121 VTISRLVAKVDNVALQAGYQLYHHTFFLDEEGNWAVIQQGMNPRNKLARRYHWFNADLDK 180
+ +SRLVAKVDNVALQAGYQLYHHTFFLDEEGNWAV+QQGMN + KLARRYHWFN+DL
Sbjct: 121 IKVSRLVAKVDNVALQAGYQLYHHTFFLDEEGNWAVVQQGMNVKEKLARRYHWFNSDLKD 180
Query: 181 LILPHKGISGIKGSFALNTVDKDTEKFQKSLIEIAQEGKRVEKDLEVVKAIIKGYSVFYK 240
L PH GISGI+ FALNTVDKD +FQ++++EIAQEG+RV +DLE VKA++KGY+VFYK
Sbjct: 181 LENPHSGISGIRSDFALNTVDKDMREFQRTVVEIAQEGRRVMRDLETVKAMVKGYAVFYK 240
Query: 241 PRDVNVKEVYRRYESLGKLELNVRALEFIKELEVKDYQTFLLIKGLGPSTLRALSLVAEL 300
PRDV+VKE+Y RYESLGKLELN RALEF++ELE+KDY TFLLIKG+GPSTLRALSLVAEL
Sbjct: 241 PRDVDVKEIYERYESLGKLELNARALEFMRELEIKDYSTFLLIKGIGPSTLRALSLVAEL 300
Query: 301 IYDVKPSWRDPVTHPPDPFKYAYALGGKDRVPFRIEKGTYDDLINFLQKLSETGNKEILK 360
IYDVKPSWRDPVTHPPDPFK+AYALGGKDRVPFR+EK TYDDLINFL KLSE+GNK +LK
Sbjct: 301 IYDVKPSWRDPVTHPPDPFKFAYALGGKDRVPFRVEKETYDDLINFLGKLSESGNKYLLK 360
Query: 361 VVKKISEKWKFPEEEKVPTF 380
VK+ISEKWKFPE+EKVPTF
Sbjct: 361 AVKRISEKWKFPEKEKVPTF 380
>gb|AAK42598.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 379
Score = 300 bits (759), Expect = 2e-80
Identities = 154/375 (41%), Positives = 243/375 (64%), Gaps = 16/375 (4%)
Query: 5 GVAELPLHTGHVPPWLANRMRKLSKIVLKLLVEEYGTKGLLERLADPVWFQAFNNLIGMD 64
G+A+LPLHTGHVPPWL M++L+K ++++++ E G + ++ER ++P+WFQ FNN+IGMD
Sbjct: 5 GIADLPLHTGHVPPWLVPIMKRLAKAIVEIMILELGPQKVVERFSNPLWFQGFNNIIGMD 64
Query: 65 WDSSGSTTVTTGIIKEALNELDLGVKVAGGKGKKSRGTPDEIRLISEKFELNPEKYVTIS 124
WDSSGSTTVT GI+K+ N G V GGKGK + PDE+ ++ F+++ K IS
Sbjct: 65 WDSSGSTTVTLGILKDITNPKVHGFAVLGGKGKNALKVPDEVDMLI--FDVDKNKIKNIS 122
Query: 125 RLVAKVDNVALQAGYQLYHHTFFLDEEGNWAVIQQGMNPRNKLARRYHWFNADLDKLILP 184
++VAKVD+ +Q G+QLYHHT + E+G W++IQQGMN K ARRYHW D + ++ P
Sbjct: 123 KIVAKVDSTLVQDGHQLYHHTMLVTEDGKWSIIQQGMNLEIKFARRYHWKETD-NFVVEP 181
Query: 185 HKGISGIKGSFALNTVDKDTEKFQKSLIEIAQEG-KRVEKDLEVVKAIIKGYS---VFYK 240
H ISGIK + +N +D+D ++ +K ++++ +E ++ A++KG S ++ K
Sbjct: 182 HSAISGIKTNVVVNVIDRDKDRTRKLILDLLRENPNKIVSLYTQAMAMLKGQSTLDMWIK 241
Query: 241 PRDVNVKEVYRRYESLGKLELNVRALEFIKELEVKDYQTF--LLIKGLGPSTLRALSLVA 298
+ R + +++N R + ++E+ + TF LI GLGPST RAL L+A
Sbjct: 242 GGSIAFVSKEARLIYMKPVDVN-RIKQVLREMYESNPLTFEEALINGLGPSTARALYLIA 300
Query: 299 ELIYDVKPSWRDPVTHPPDPFKYAYALGGKDRVPFRIEKGTYDDLINFLQ------KLSE 352
+LIY+ PS++DP+ +P DPFKYA+A+GGKD +P+ + + ++I L+ KL E
Sbjct: 301 DLIYNEPPSYKDPMNYPYDPFKYAFAIGGKDGIPYPVNRKAAWEVIYTLEDFITRAKLEE 360
Query: 353 TGNKEILKVVKKISE 367
+ L+ +K++S+
Sbjct: 361 GDKRLALRKLKELSK 375
>pir||F72567 hypothetical protein APE1824 - Aeropyrum pernix (strain K1)
>gi|5105514|dbj|BAA80827.1| (AP000062) 385aa long
hypothetical protein [Aeropyrum pernix]
Length = 385
Score = 245 bits (618), Expect = 8e-64
Identities = 137/378 (36%), Positives = 214/378 (56%), Gaps = 19/378 (5%)
Query: 4 TGVAELPLHTGHVPPWLANRMRKLSKIVLKLLVEEYGTKGLLERLADPVWFQAFNNLIGM 63
TGVA+LPLH+G VPPW+ M +L++ + + +VE +G ++ LADP WFQAFNN IGM
Sbjct: 2 TGVADLPLHSGKVPPWMLKVMERLARSIARAIVEIHGPDAVVRGLADPYWFQAFNNAIGM 61
Query: 64 DWDSSGSTTVTTGIIKEALNELDLGVKVAGGKGKKSRGTPDEIRLISEKFELNPEKYVTI 123
DWDSSGSTTV ++++ DLG V GGKG++ RG E+ ++++ ++ K +
Sbjct: 62 DWDSSGSTTVLLAVLRKVSLSEDLGFIVVGGKGRRMRGIDSEVEALADRVGIDASKLLGF 121
Query: 124 SRLVAKVDNVALQAGYQLYHHTFFLDEEGNWAVIQQGMNPRNKLARRYHWFNADLDKLIL 183
S+ +V NV LQ GY Y H E G +QQGMN L+RRYH D + +
Sbjct: 122 SQAAGRVSNVLLQDGYSPYIHAVVASETGLMVAVQQGMNVEAGLSRRYH---VDRESVEE 178
Query: 184 PHKGISGI-KGSFALNTVDKDTEKFQKSLIEIAQEG-KRVEKDLEVVKAIIKGYSVFYKP 241
P +G+SGI S LN V ++++ +K +++A+EG R+E+ + ++ G
Sbjct: 179 PFRGVSGILSHSGVLNAVASESKEARKLYVDLAREGASRIERMVLEASRMVSGAPTLLDY 238
Query: 242 RDVNVKEVYRR-----------YESLGKLELNVRALEFIKELEVKDYQTFLLIKGLGPST 290
D + +R Y+ + + LE + + D Q L GL P
Sbjct: 239 MDRHPGASHRNASGGPRSSKPYYKPVPIDSRTRKYLEMLADNPPVDEQDLLTAPGLTPKV 298
Query: 291 LRALSLVAELIYDVKPSWRDPVTHPPDPFKYAYALGGKDRVPFRIEKGTYDDLINFLQ-- 348
+RAL+LVA++IY V S RDPV+ P +PF YAY++GGKD VP+R ++ T + ++ L+
Sbjct: 299 VRALALVADIIYGVPTSHRDPVSTPLNPFVYAYSVGGKDGVPYRFDRRTAERVVLALEEA 358
Query: 349 -KLSETGNKEILKVVKKI 365
+L+ G E L+ ++++
Sbjct: 359 VELARLGRDEKLRALRRL 376
>gi|11499091 A. fulgidus predicted coding region AF1496 [Archaeoglobus fulgidus]
>gi|7483642|pir||G69436 hypothetical protein AF1496 -
Archaeoglobus fulgidus >gi|2649076|gb|AAB89758.1|
(AE000999) A. fulgidus predicted coding region AF1496
[Archaeoglobus fulgidus]
Length = 353
Score = 237 bits (599), Expect = 1e-61
Identities = 134/363 (36%), Positives = 214/363 (58%), Gaps = 31/363 (8%)
Query: 9 LPLHTGHVPPWLANRMRKLSKIVLKLLVEEYGTKGLLERLADPVWFQAFNNLIGMDWDSS 68
LPLH G P WL +RM+KL+K ++KL+V EYG + LERL++P++FQ+ +N++G DW+SS
Sbjct: 6 LPLHHGKAPHWLLSRMKKLAKPIVKLIVLEYGEREFLERLSNPIFFQSLSNVLGFDWNSS 65
Query: 69 GSTTVTTGIIKEALNELDLGVKVAGGKGKKSRGTPDEIRLISEKFELNPEKYVTISRLVA 128
G TTV TG++K +N + +++AGGKG + TP+EI SE+ + EK V SRL A
Sbjct: 66 GVTTVLTGVLKAVINNEEFDIRIAGGKGGNALKTPEEIMNYSEQIGADGEKLVEFSRLAA 125
Query: 129 KVDNVALQAGYQLYHHTFFLDEEGNWAVIQQGMNPRNKLARRYHW-FNADLDKLILPHKG 187
K DN AL GY LYHH + VIQQGMN ++ARRYHW + + +L H+G
Sbjct: 126 KADNAALIDGYSLYHHAVIFTPR-YFTVIQQGMNETERMARRYHWNVYSSVPELENVHEG 184
Query: 188 -ISGIKGSFALNTVDKDTEKFQKSLIEIAQEGKRVEKDLEVVKAIIKGYSVFYKPRDVNV 246
I+ + + +N + + ++ ++I ++G +D E + ++++ P+ ++
Sbjct: 185 IITERRENEVVNMLSDISRDAKRLCVDIVRDGS-FRRDYERMISVLRWRKGLRVPKKLDW 243
Query: 247 KEVYRRYESLGKLELNVRALEFIKELEVKDYQTFLLIKGLGPSTLRALSLVAELIYDVKP 306
K V R Y L+ + ++ LLI+G G T+RAL+LVAE+IY+ +
Sbjct: 244 KVVERAY-----------------NLQPERFEELLLIRGFGRETIRALALVAEIIYNTE- 285
Query: 307 SWRDPVTHPPDPFKYAYALGGKDRVPFRIEKGTYDDLINFLQ---KLSETGNKEILKVVK 363
DP KY +A+GGKD VPF + + YD++I F++ K +E G+ E K+++
Sbjct: 286 ------YDKTDPAKYCFAVGGKDGVPFPVRRDIYDEIIEFMRETVKQAEIGDFEKKKMLE 339
Query: 364 KIS 366
++S
Sbjct: 340 RLS 342
>pir||E69158 hypothetical protein MTH448 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621515|gb|AAB84954.1| (AE000829)
unknown [Methanobacterium thermoautotrophicum]
Length = 231
Score = 206 bits (520), Expect = 3e-52
Identities = 95/190 (50%), Positives = 130/190 (68%), Gaps = 1/190 (0%)
Query: 1 MMRTGVAELPLHTGHVPPWLANRMRKLSKIVLKLLVEEYGTKGLLERLADPVWFQAFNNL 60
M RTG+A LPLH GH P WL RM +LS + ++++EEYGT + R++DP WFQAF+ +
Sbjct: 5 MRRTGIANLPLHGGHPPAWLMRRMIELSGAITEVIIEEYGTSEFISRISDPFWFQAFSCV 64
Query: 61 IGMDWDSSGSTTVTTGIIKEALNELDLGVKVAGGKGKKSRGTPDEIRLISEKFELNPEKY 120
IG DW SSG+TT T G +K AL+ G+ VAGGKG+KSR TP E++ +E F+L+ E
Sbjct: 65 IGFDWHSSGTTTTTCGALKSALDPEVHGIMVAGGKGRKSRRTPSELQAAAEIFDLDAEGL 124
Query: 121 VTISRLVAKVDNVALQAGYQLYHHTFFLDEEGNWAVIQQGMNPRNKLARRYHWFNADLDK 180
V SR+ A+VD +Q G+ LY HTF +D +G WAV+QQG++P ARRYHW + + +
Sbjct: 125 VYASRISARVDGNCIQDGFNLYQHTFLVDSDGEWAVVQQGLDPHGGYARRYHWLGSGVGE 184
Query: 181 LI-LPHKGIS 189
+ PH GIS
Sbjct: 185 YVESPHSGIS 194
>emb|CAC12222.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 363
Score = 194 bits (489), Expect = 1e-48
Identities = 122/353 (34%), Positives = 182/353 (50%), Gaps = 25/353 (7%)
Query: 1 MMRTGVAELPLHTGHVPPWLANRMRKLSKIVLKLLVEEYGTKGLLERLADPVWFQAFNNL 60
M R G++ LPLH GH P +L R KLS I+ +++V+ YG L+ RLADP WF + + +
Sbjct: 3 MERRGISALPLHYGHPPEYLFKRAVKLSGIMAEIIVDTYGQGELIRRLADPFWFHSLSLV 62
Query: 61 IGMDWDSSGSTTVTTGIIKEALNELDLGVKVAGGKGKKSRGTPDEIRLISEK--FELNPE 118
G DW+SSG+T T +KE L+ DLGVKV GGK ++ E + + +
Sbjct: 63 TGFDWNSSGTTVFTLSALKEYLSTRDLGVKVCGGKASAMADMRADLLSSVETGILKEDDK 122
Query: 119 KYV-TISRLVAKVDNVALQAGYQLYHHTFFLDEEGNWAVIQQGMNPRNKLARRYHWFNAD 177
+YV +R +AK+DN LQ GY LY + + G AVIQQGMN +++ARRYHW +
Sbjct: 123 EYVYENARRIAKIDNSLLQDGYDLYMQFVVVSDRGRHAVIQQGMNSEDRMARRYHWLIGN 182
Query: 178 LDKLILPHKGISGIKGSFALNTVDKDTEKFQKSLIEIAQEGKRVEKDLEVVKAIIKGYSV 237
+ G+S K S + + + +S I + V + ++ + +S+
Sbjct: 183 ERVDVEGRYGLSADKTSLNVLDLSATESRDNRSAIVASVREGEVWRFRSGAQSTLDNFSL 242
Query: 238 FYKPRDVNVKEVYRRYESLGKLELNVRALEFIKELEVKDYQTFLLIKGLGPSTLRALSLV 297
+ V N + L + E V D++ + KG+G STLRALS +
Sbjct: 243 PFLDLSGRV---------------NWKKLRDLYEYGVDDFEKIYMEKGIGKSTLRALSYI 287
Query: 298 AELIYDVKPSWRDPVTHPPDPFKYAYALGGKDRVPFRIEKGTYDDLINFLQKL 350
AE+IY K S+RDPV K+++A+GGKD +P + YD I F L
Sbjct: 288 AEVIYGPKASFRDPV-------KFSFAVGGKDGIPKPVNTYDYDRAIEFFSDL 333
>pir||F69158 hypothetical protein MTH449 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621516|gb|AAB84955.1| (AE000829)
unknown [Methanobacterium thermoautotrophicum]
Length = 120
Score = 76.5 bits (185), Expect = 5e-13
Identities = 39/110 (35%), Positives = 65/110 (58%), Gaps = 10/110 (9%)
Query: 260 ELNVRALEFIKELEVKDYQTFLLIKGLGPSTLRALSLVAELIYDVKPSWRDPVTHPPDPF 319
E ++ LE E++ DY+ +++ G G +RAL+LVA+L++ + SWRDPV
Sbjct: 14 ERDMAVLERAYEIQPADYEELVMLSGFGAKKVRALALVADLVHGERASWRDPV------- 66
Query: 320 KYAYALGGKDRVPFRIEKGTYDDLINFLQKLSETG---NKEILKVVKKIS 366
KY+YA GGKD P+ +++ TYD + +L+ E KE L+ +K ++
Sbjct: 67 KYSYAHGGKDGYPYPVDRETYDCTVEYLRSAIEDAKIDKKERLRALKSLN 116
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.405
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144397170
Number of Sequences: 2977
Number of extensions: 6131837
Number of successful extensions: 15506
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15488
Number of HSP's gapped (non-prelim): 8
length of query: 380
length of database: 189,106,746
effective HSP length: 55
effective length of query: 325
effective length of database: 156,189,961
effective search space: 50761737325
effective search space used: 50761737325
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)