BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1514 1267425 1267111 -105 !not a gene!
         (105 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G71123 hypothetical protein PH0758 - Pyrococcus horikoshii ...    92  2e-18

>pir||G71123 hypothetical protein PH0758 - Pyrococcus horikoshii
           >gi|3257166|dbj|BAA29849.1| (AP000003) 104aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 104
           
 Score = 91.7 bits (224), Expect = 2e-18
 Identities = 49/88 (55%), Positives = 53/88 (59%)

Query: 17  LSILAGVNNTICLFSRKWRGIISPQVKGNLEYLPRNVAKFMSTIGKFXXXXXXXXXXXXX 76
           LSILAGV+NTI LFSRKWRGIISPQV GNLEYLP  +AKF+STIG               
Sbjct: 3   LSILAGVSNTISLFSRKWRGIISPQVSGNLEYLPLALAKFISTIGNLPLASLNIFSANIL 62

Query: 77  XXXXXXXXXXXXXXKGSQGIKCSAIIIP 104
                         KGSQGI+ S IIIP
Sbjct: 63  SVLYSLSLGTCTSLKGSQGIRYSVIIIP 90


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.141    0.419 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25198432
Number of Sequences: 2977
Number of extensions: 640678
Number of successful extensions: 1307
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1305
Number of HSP's gapped (non-prelim): 1
length of query: 105
length of database: 189,106,746
effective HSP length: 50
effective length of query: 55
effective length of database: 159,182,396
effective search space: 8755031780
effective search space used: 8755031780
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 159 (66.3 bits)