BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1516 (PAB1516) DE:Hypothetical protein
(469 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (st... 951 0.0
pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii ... 656 0.0
pir||G69123 conserved hypothetical protein MTH196 - Methanobacte... 601 e-171
pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii ... 440 e-122
pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (st... 387 e-106
pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (st... 369 e-101
gi|10954496 M. jannaschii predicted coding region MJECL04 [Metha... 368 e-101
pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (st... 366 e-100
pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii ... 360 3e-98
pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (st... 315 6e-85
pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii ... 287 2e-76
pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii ... 280 3e-74
pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (st... 277 3e-73
pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii ... 269 6e-71
pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii ... 245 1e-63
emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.] 240 2e-62
pir||D75092 hypothetical protein PAB1620 - Pyrococcus abyssi (st... 236 5e-61
gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfat... 230 2e-59
pir||E75058 hypothetical protein PAB1412 - Pyrococcus abyssi (st... 198 2e-49
pir||D75058 hypothetical protein PAB1413 - Pyrococcus abyssi (st... 164 1e-39
pir||A71133 hypothetical protein PHS026 - Pyrococcus horikoshii ... 90 5e-17
pir||H71134 hypothetical protein PH0844 - Pyrococcus horikoshii ... 83 6e-15
sp|Q57868|Y425_METJA HYPOTHETICAL PROTEIN MJ0425 >gi|2128315|pir... 78 2e-13
pir||E75092 hypothetical protein PAB1619 - Pyrococcus abyssi (st... 76 1e-12
>pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (strain Orsay)
>gi|5458720|emb|CAB50207.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 469
Score = 951 bits (2432), Expect = 0.0
Identities = 469/469 (100%), Positives = 469/469 (100%)
Query: 1 MFISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADN 60
MFISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADN
Sbjct: 1 MFISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADN 60
Query: 61 LKRFSERVAKYFDGDLLRKNPFQNWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASI 120
LKRFSERVAKYFDGDLLRKNPFQNWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASI
Sbjct: 61 LKRFSERVAKYFDGDLLRKNPFQNWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASI 120
Query: 121 LQEYWDLKLSKSKIFLIICGSSITMMEKLLGYKSPIYGRRTCQLKLKPMDFFSARKFLPR 180
LQEYWDLKLSKSKIFLIICGSSITMMEKLLGYKSPIYGRRTCQLKLKPMDFFSARKFLPR
Sbjct: 121 LQEYWDLKLSKSKIFLIICGSSITMMEKLLGYKSPIYGRRTCQLKLKPMDFFSARKFLPR 180
Query: 181 YPIEDSLRAYGILGGTPAYLLKFDDKKSIEENLLSYFRPDSFLYQDALFILREELNEPRN 240
YPIEDSLRAYGILGGTPAYLLKFDDKKSIEENLLSYFRPDSFLYQDALFILREELNEPRN
Sbjct: 181 YPIEDSLRAYGILGGTPAYLLKFDDKKSIEENLLSYFRPDSFLYQDALFILREELNEPRN 240
Query: 241 YFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSRKGRYY 300
YFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSRKGRYY
Sbjct: 241 YFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSRKGRYY 300
Query: 301 INDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNKESL 360
INDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNKESL
Sbjct: 301 INDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNKESL 360
Query: 361 LTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKAQLVG 420
LTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKAQLVG
Sbjct: 361 LTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKAQLVG 420
Query: 421 LENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKDFELLDREFNKEANSKE 469
LENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKDFELLDREFNKEANSKE
Sbjct: 421 LENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKDFELLDREFNKEANSKE 469
>pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii
>gi|3257391|dbj|BAA30074.1| (AP000004) 496aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 496
Score = 656 bits (1673), Expect = 0.0
Identities = 312/453 (68%), Positives = 384/453 (83%)
Query: 1 MFISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADN 60
+FI R++EL LL+ER++SGKA+FIVIYGRRR+GKTALILE +R++GG+YLLARETSE +N
Sbjct: 38 LFIDRKKELGLLEERLKSGKAQFIVIYGRRRVGKTALILEFLRRHGGLYLLARETSEIEN 97
Query: 61 LKRFSERVAKYFDGDLLRKNPFQNWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASI 120
L+RFS R+A+YF+ L+KNP ++ DAFFEYL K+ + I+AIDEFPYL+KGNKAL SI
Sbjct: 98 LERFSLRLAEYFNDSFLKKNPLRSLDAFFEYLSTKAEKPFIIAIDEFPYLVKGNKALPSI 157
Query: 121 LQEYWDLKLSKSKIFLIICGSSITMMEKLLGYKSPIYGRRTCQLKLKPMDFFSARKFLPR 180
LQEYW++KLSK KIFLI+ GSS++M E+LLGYKSP+YGRRT QLKLKP+DFF+AR+FLP+
Sbjct: 158 LQEYWEMKLSKKKIFLIVSGSSVSMTERLLGYKSPLYGRRTAQLKLKPLDFFNAREFLPK 217
Query: 181 YPIEDSLRAYGILGGTPAYLLKFDDKKSIEENLLSYFRPDSFLYQDALFILREELNEPRN 240
Y +ED +R YGILGGTPAYLL+F D+KS+EENL SYFR DS LY DALFILREEL+EPRN
Sbjct: 218 YSLEDFVRVYGILGGTPAYLLEFSDEKSLEENLKSYFRVDSLLYGDALFILREELDEPRN 277
Query: 241 YFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSRKGRYY 300
YFAIMEAIA+G T+LGEI+NET L+R TVGKYLSVLIDLDLVRREVPIT S KSRKGRYY
Sbjct: 278 YFAIMEAIARGNTTLGEIVNETGLERATVGKYLSVLIDLDLVRREVPITASRKSRKGRYY 337
Query: 301 INDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNKESL 360
I D YFAFWFRYV PN DLIE+G G+LLV VM+D D Y VFE V ++FL+RLNK
Sbjct: 338 IADNYFAFWFRYVYPNADLIESGNGELLVDTVMDDIDHYTGEVFEGVAKEFLLRLNKSER 397
Query: 361 LTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKAQLVG 420
L F ++GRWW+K EEIDLVALNE +K VLF+EV+WK+LS+ E R ++ L +KA+LVG
Sbjct: 398 LPFRFSRVGRWWYKNEEIDLVALNEREKKVLFIEVKWKDLSKREARGILKDLKRKAKLVG 457
Query: 421 LENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKD 453
L+ W ++YGLV K +RGK++++ EGWL WDL+D
Sbjct: 458 LDEWGKHYGLVAKSVRGKDEIKEEGWLAWDLED 490
>pir||G69123 conserved hypothetical protein MTH196 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621241|gb|AAB84702.1| (AE000807) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 458
Score = 601 bits (1534), Expect = e-171
Identities = 283/457 (61%), Positives = 366/457 (79%), Gaps = 4/457 (0%)
Query: 1 MFISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADN 60
MF+ RE EL L+ R E G EFIVIYGRRR+GKTAL+LE I ++GGIYLLARETS +N
Sbjct: 1 MFLDRERELQFLERRYEMGGPEFIVIYGRRRVGKTALLLEFISRHGGIYLLARETSNLEN 60
Query: 61 LKRFSERVAKYFDGDLLRKNPFQNWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASI 120
LKRFS+R+++YF D L++NPFQNWDAF EYL QK+ ER++V IDEFPYL+KG+++L SI
Sbjct: 61 LKRFSDRLSEYFGDDFLKRNPFQNWDAFLEYLNQKATERLVVVIDEFPYLVKGDRSLPSI 120
Query: 121 LQEYWDLKLSKSKIFLIICGSSITMMEKLLGYKSPIYGRRTCQLKLKPMDFFSARKFLPR 180
LQEYWDLKLS +IFLIICGSSI+MMEKLLGYKSPIYGRRT Q+ LKP+DF AR+FLP
Sbjct: 121 LQEYWDLKLSNGRIFLIICGSSISMMEKLLGYKSPIYGRRTGQINLKPVDFLHAREFLPG 180
Query: 181 YPIEDSLRAYGILGGTPAYLLKFDDKKSIEENLLSYFRPDSFLYQDALFILREELNEPRN 240
Y +ED ++AYGILGG+PA+LL+FDD K+I+ENLL Y R DS LYQDA F+LREEL EPRN
Sbjct: 181 YSLEDFIKAYGILGGSPAHLLEFDDSKTIKENLLEYLRSDSLLYQDAFFVLREELEEPRN 240
Query: 241 YFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSRKGRYY 300
YFAIMEA+A G TSLGEIMNET L R TV KYLSVLI+LD V+RE+PIT S KSR+GRYY
Sbjct: 241 YFAIMEAVAAGKTSLGEIMNETGLSRATVAKYLSVLIELDFVKREIPITASRKSRRGRYY 300
Query: 301 INDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNKESL 360
I D YFAFWFRY+ PN+D IE+ + L++++++D YL G+FE+V +FL ++ +
Sbjct: 301 IKDNYFAFWFRYIHPNIDFIESERRKELLELIIDDLPNYLGGIFENVAIEFLPLISNKLP 360
Query: 361 LTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKAQLVG 420
P +KIGRWWHK EEIDLVA NE ++ + +EV+WK L++ E K ++ L +K++++
Sbjct: 361 FKP--LKIGRWWHKNEEIDLVAFNEKEEKAILIEVKWKTLNKIEANKILKDLNRKSKILK 418
Query: 421 LENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKDFELL 457
++ W++Y+G++ KR++ KEK++ G L+WDL+D E L
Sbjct: 419 MKEWEQYHGIIAKRVKDKEKIK--GGLIWDLEDIENL 453
>pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii
>gi|3257390|dbj|BAA30073.1| (AP000004) 471aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 471
Score = 440 bits (1119), Expect = e-122
Identities = 224/459 (48%), Positives = 308/459 (66%), Gaps = 8/459 (1%)
Query: 2 FISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADNL 61
F+ RE EL L+ER SG AE ++IYGRRRIGKT L+L R +Y LA E DNL
Sbjct: 11 FVDRERELAFLEERYASGNAELLIIYGRRRIGKTELLLHFARNKEHVYFLASEKPYRDNL 70
Query: 62 KRFSERVAKYFDGDLLRKNPFQNWDAFF-EYLYQKSGERVIVAIDEFPYLLKGNKALASI 120
+ + + L + F + D E+ + G RV++ IDEFPYL++ K + S+
Sbjct: 71 RELQRMMGDFLGDRLFSRVEFSDIDELLIEFSKRVQGRRVVLIIDEFPYLIEHYKPVLSL 130
Query: 121 LQEYWDLKLSKSKIFLIICGSSITMME-KLLGYKSPIYGRRTCQLKLKPMDFFSARKFLP 179
+Q WD++LSKS + LI+CGSS++ ME ++LGYKSP+YGRRT Q K+ + F+S R+F P
Sbjct: 131 IQRAWDMELSKSDLMLILCGSSVSSMETEVLGYKSPLYGRRTGQWKVGELPFWSLREFFP 190
Query: 180 RYPIEDSLRAYGILGGTPAYLLKFDDKKSIEENLLS-YFRPDSFLYQDALFILREELNEP 238
Y E+ ++ YG+LGG PAYLL+F+ +K+ +EN++ +FLY++A +L+EE+ EP
Sbjct: 191 SYSTEELVKVYGVLGGIPAYLLQFNPEKNFDENVVEKVLSKGAFLYEEAEILLKEEMREP 250
Query: 239 RNYFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKS--RK 296
NYF I++AIA G + GEI+N T LD+ V KYL+VL L +V REVP+T S K ++
Sbjct: 251 ANYFIILQAIASGRSRFGEIVNATGLDKSLVSKYLNVLEKLGMVEREVPVTASRKEALKR 310
Query: 297 GRYYINDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLN 356
GRY I D Y AFWFRYVLPN +E G G + + EDF +Y+ GVFE + R+ V
Sbjct: 311 GRYSITDNYLAFWFRYVLPNKSYLEAGLGKEIWERSKEDFKEYMGGVFERLLRKPEVFTK 370
Query: 357 KESLLTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKA 416
L F ++GRWW+K EEIDLVALNE +K VLF+EV+WK+LS+ E R ++ L +KA
Sbjct: 371 ---LTDFRFSRVGRWWYKNEEIDLVALNEREKKVLFIEVKWKDLSKREARGILKDLERKA 427
Query: 417 QLVGLENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKDFE 455
+LV L+NW++YYGLV K + GKEKLR E +LVWDLKDFE
Sbjct: 428 KLVELDNWEKYYGLVTKSLEGKEKLREESYLVWDLKDFE 466
>pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (strain Orsay)
>gi|5458590|emb|CAB50078.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 387 bits (984), Expect = e-106
Identities = 204/459 (44%), Positives = 284/459 (61%), Gaps = 14/459 (3%)
Query: 2 FISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADNL 61
FI RE+EL L++R SG+AE I+IYGRRRIGKT L+ + + + GGIYLLA E+ L
Sbjct: 7 FIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEESETV--L 64
Query: 62 KRFSERVAKYFDGDLLRKNPFQNWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASIL 121
+ FSER+A+YF+ L++NP +NW AFF YL KS ER++V IDE Y+ K K S L
Sbjct: 65 EDFSERLAEYFNDPFLKENPLRNWGAFFAYLAGKSSERLVVVIDEVQYIAKSQKDFLSTL 124
Query: 122 QEYWDLKLSKSKIFLIICGSSITMMEKLLGYKSPIYGRRTCQLKLKPMDFFSARKFLPRY 181
Q+YWDL LS +KI LI+CGS ++ ME +L KSPIYGRRT K++ MDFF+A KF
Sbjct: 125 QKYWDLYLSDTKIMLILCGSLVSFMEGILSAKSPIYGRRTGAWKVEEMDFFNAWKF-HDV 183
Query: 182 PIEDSLRAYGILGGTPAYLLKFDDKKSIEENLLSYFRPDSFLYQD-ALFILREELNEPRN 240
E + Y + GG P YL ++ ENL Y D ++L++EL +
Sbjct: 184 DAETVVHIYSVFGGVPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQELRDVSR 243
Query: 241 YFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSRKGR-- 298
YF+I+ AIA G T G+I ++ ++ ++ KYL VL ++ + E P+ KGR
Sbjct: 244 YFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVI-----GKGRTI 298
Query: 299 YYINDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNKE 358
Y I D FAFWFR+V P IE G +V+ + +F+ YL FE + RQFLVRLN
Sbjct: 299 YRIRDNLFAFWFRFVYPRRSEIEMGFD--VVEEIKGEFNDYLGKAFEGIARQFLVRLNTL 356
Query: 359 SLLTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKAQL 418
L F KIGRWWH+GEE+D+VA+NE +K + V V WK L + R+ + L +K++L
Sbjct: 357 GRLPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRKSEL 416
Query: 419 VGLENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKDFELL 457
+GLE W+++Y +V + ++GKE L +WDL+DFE L
Sbjct: 417 IGLEGWEKHYAIVARDVQGKEDLEDNSH-IWDLRDFEEL 454
>pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (strain Orsay)
>gi|5458278|emb|CAB49767.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 451
Score = 369 bits (936), Expect = e-101
Identities = 203/458 (44%), Positives = 290/458 (62%), Gaps = 25/458 (5%)
Query: 6 EEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADNLKRFS 65
E+EL ++E + S K E IVIYGRRR+GKT LILE ++ + +Y LA E+DNL+ F
Sbjct: 6 EKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLA---VESDNLRHFR 62
Query: 66 ERVAKYFDGDLLRKNPFQNWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASILQEYW 125
E + F K ++W++ L K I+ IDEFP L+K + + S+ Q
Sbjct: 63 ETAERVFPEV---KYVREDWESILHALKGK-----IIIIDEFPNLIKEDPKVVSLFQRAI 114
Query: 126 DLKLSKSKIFLIICGSSITMM-EKLLGYKSPIYGRRTCQLKLKPMDFFSARKFLPRYPIE 184
DL+LS S +I+ GSS++++ EK+L KSP+YGRRT +KLKP++FF+ ++F P E
Sbjct: 115 DLELSNSNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASWE 174
Query: 185 DSLRAYGILGGTPAYLL--KFDDKKSIEENLLSYFRPDSFLYQDALFILREELNEPRNYF 242
+ + YG G P Y++ K + +E+ LLS P SF + F+L+ E E R Y
Sbjct: 175 ELVEIYGFTDGIPYYIIQVKLPFWEWLEKELLS---PLSFFKDEVDFLLKYEFTETRVYR 231
Query: 243 AIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSRKGRYYIN 302
I+EAIA G T++ EI + T + + YL L++ DLV REVPITE S++GRYY+
Sbjct: 232 RILEAIALGKTTIKEIKDFTGMRHSDITPYLRNLLETDLVVREVPITEKPYSKRGRYYLA 291
Query: 303 DPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNKESLLT 362
D + AFWFRY+ PN+ IE +G ++ + D+ QYL VFE V RQFL++LN
Sbjct: 292 DNFLAFWFRYIYPNLSRIE--EGTFSIEEIRGDYSQYLGWVFEKVARQFLLKLNI----- 344
Query: 363 PSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKAQLVGLE 422
+F KIGRWWHK +EID+VALNE K VLF EV+WK+L E E K +R+L KK +L GL+
Sbjct: 345 -NFTKIGRWWHKDKEIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLD 403
Query: 423 NWKEYYGLVGKRIRGKEKLRSEGWLVWDLKDFELLDRE 460
+W++ YGL+ + I GKE L+ +G+LVWDL+DF L+ R+
Sbjct: 404 DWEKSYGLIARNIEGKENLKGKGYLVWDLRDFNLVYRQ 441
>gi|10954496 M. jannaschii predicted coding region MJECL04 [Methanococcus
jannaschii] >gi|2496210|sp|Q60260|YZ04_METJA
HYPOTHETICAL PROTEIN MJECL04 >gi|2129021|pir||D64510
hypothetical protein MJECL04 - Methanococcus jannaschii
plasmid pURB800 >gi|1500652|gb|AAC37078.1| (L77118) M.
jannaschii predicted coding region MJECL04
[Methanococcus jannaschii]
Length = 439
Score = 368 bits (934), Expect = e-101
Identities = 207/459 (45%), Positives = 286/459 (62%), Gaps = 26/459 (5%)
Query: 1 MFISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADN 60
MF+ REEEL L E+++S EFIVIYGRRRIGKT L L+ + IY LA E DN
Sbjct: 1 MFVDREEELKALNEKLDSNNFEFIVIYGRRRIGKTKLALKSVENREHIYYLA---VEGDN 57
Query: 61 LKRFSERVAKYFDGDLLRKNPFQNWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASI 120
LK F +K K ++W+A+F +L K I+ IDEFP L+K N + S+
Sbjct: 58 LKHFKRYASKVEPTIEYAK---EDWEAYFNFLKDK-----IIIIDEFPNLIKENPNVLSL 109
Query: 121 LQEYWDLKLSKSKIFLIICGSSITMM-EKLLGYKSPIYGRRTCQLKLKPMDFFSARKFLP 179
Q D+ L +K LII GSSI+MM EK+L YKSP+YGR+T LK+KP+ F ++F P
Sbjct: 110 FQRIVDIHLKNTKTKLIILGSSISMMGEKVLSYKSPLYGRKTGVLKIKPLKFKHLKEFFP 169
Query: 180 RYPIEDSLRAYGILGGTPAYL----LKFDDKKSIEENLLSYFRPDSFLYQDALFILREEL 235
+ E+ + YG G P YL L F D E R DSFL + F+++ E
Sbjct: 170 KAIWEELVEIYGFADGIPYYLEKVKLPFWDYLDKEIK-----RVDSFLRYEVDFLMKYEF 224
Query: 236 NEPRNYFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSR 295
EP Y I+EAIA G +LGEI N + YL LI+++ + R+ PITES KS+
Sbjct: 225 EEPTTYKKILEAIAFGNHTLGEIKNYLGFKHSDLTPYLKNLIEVEFIERQTPITESVKSK 284
Query: 296 KGRYYINDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRL 355
KGRYYI D + AF+FRY+ PN+ IE G D ++ + D++QYL VFE V ++FL+ L
Sbjct: 285 KGRYYIKDNFIAFYFRYIFPNLSAIEEGIFD--IEEIKADYNQYLGFVFEKVAKEFLIEL 342
Query: 356 NKESLLTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKK 415
NK + L F+KIGRWWH+GEEIDL+ALN++ K LFVEV+WK+L + + +K R L +K
Sbjct: 343 NKMNKLPFKFLKIGRWWHRGEEIDLIALNDNDKKALFVEVKWKDLKDRDVKKIYRDLYRK 402
Query: 416 AQLVGLENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKDF 454
++LVGL+++++YY +VGK+I KE + L++DL+DF
Sbjct: 403 SKLVGLDDYEKYYAIVGKKIESKE---NGDCLLFDLEDF 438
>pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (strain Orsay)
>gi|5458620|emb|CAB50108.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 462
Score = 366 bits (930), Expect = e-100
Identities = 195/458 (42%), Positives = 291/458 (62%), Gaps = 11/458 (2%)
Query: 2 FISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADNL 61
F++R+ EL +L+ E G F+V YGRRR+GKTAL+ + + GIY L + +L
Sbjct: 10 FVNRKRELKVLERAWEEGFRLFVV-YGRRRVGKTALLRKFLENKRGIYFLCSQRGYEKDL 68
Query: 62 KRFSERVAKYFDGDLLRKNPFQNWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASIL 121
KRFS+ ++ + + F+++ F++L + +++V DEFPYL++ +K + S
Sbjct: 69 KRFSQEISSFIGAPVR----FESFKDAFKFL--RGQGKLLVIFDEFPYLIEADKGVISEF 122
Query: 122 QEYWDLKLSKSKIFLIICGSSITMMEK-LLGYKSPIYGRRTCQLKLKPMDFFSARKFLPR 180
QE D+ L S+I +I+CGSS+ MME+ +L YKSP+YGR + LK+KP FF ++ +
Sbjct: 123 QEIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFDMVEWFGK 182
Query: 181 YPIEDSLRAYGILGGTPAYLLKFDDKKSIEENLLSYFRPDSFLYQDALFILREELNEPRN 240
E LR YG+ G P Y+ +F S +E + ++F P +FL+ +A +L EEL P
Sbjct: 183 -DFERLLRLYGVTWGIPKYM-EFFKTGSDDEIINNFFNPSAFLFNEARLLLMEELRNPTR 240
Query: 241 YFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSRKGRYY 300
Y I+EAIA G T L EI ++ + YL VL +L +VRREVPITE K+++G Y
Sbjct: 241 YMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPITER-KAKRGIYV 299
Query: 301 INDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNKESL 360
I D YF F+ R+V P+ + I++ + ++ + +F+ YL FE V R+FL+ +NK
Sbjct: 300 IEDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNKHGG 359
Query: 361 LTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKAQLVG 420
L F++IG+WW + EEIDL+ALN +K VL VEV+WKEL E E R ++ L +K +LVG
Sbjct: 360 LPFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERKGELVG 419
Query: 421 LENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKDFELLD 458
LENW++YYGL+ K I+ KE L+SEGWL+WDLKDFE L+
Sbjct: 420 LENWQKYYGLIAKGIKCKELLKSEGWLLWDLKDFENLN 457
>pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii
>gi|3256839|dbj|BAA29522.1| (AP000002) 452aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 452
Score = 360 bits (913), Expect = 3e-98
Identities = 192/457 (42%), Positives = 291/457 (63%), Gaps = 18/457 (3%)
Query: 2 FISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADNL 61
F++R+ EL L++ E G A +VIYGRRR+GKTAL+ + + + GIY L +L
Sbjct: 10 FVNRKRELETLEKLYEKG-ANLVVIYGRRRVGKTALLRKFLEEKRGIYFLCSRRGYEKDL 68
Query: 62 KRFSERVAKYFDGDLLRKNPFQNWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASIL 121
KRFS+ ++K+F L F++++ FE+L ++ +++V IDEFPYL++ K + S+
Sbjct: 69 KRFSQELSKFFGIPL----SFEDFEDAFEFLSKQG--KLVVVIDEFPYLIESYKPVVSVF 122
Query: 122 QEYWDLKLSKSKIFLIICGSSITMMEK-LLGYKSPIYGRRTCQLKLKPMDFFSARKFLPR 180
Q DL L S++ LI+CGSSI MMEK +LGYK+P+YGR +K+KP FF ++ R
Sbjct: 123 QRIVDLVLEGSEVMLILCGSSIGMMEKDVLGYKAPLYGRAQGIMKVKPFRFFDMVEWYGR 182
Query: 181 YPIEDSLRAYGILGGTPAYLLKFDDKKSIEENLLSYFRPDSFLYQDALFILREELNEPRN 240
E +R YG+ G P Y+ +F + S EE + ++F P SFL+ +A +L EEL P
Sbjct: 183 -DFEKLVRLYGVTWGVPRYM-EFFREGSDEEIIRNFFDPSSFLFNEAKLLLMEELRNPAV 240
Query: 241 YFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSRKGRYY 300
Y I+EAIA G T L EI N +++D + YL L +L +V+R PIT+ +++G Y
Sbjct: 241 YGEIIEAIALGNTRLSEIANYSMIDAKDLPAYLKTLQELGIVKRITPITKR-NAKRGVYV 299
Query: 301 INDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNKESL 360
I D YF F++R+V P + IE+ + ++ ++F+ YL FE V+++FL+ +
Sbjct: 300 IEDEYFRFYYRFVNPYYEEIESLNPEPAIEDFRKNFNSYLGETFEKVSKEFLLAIG---- 355
Query: 361 LTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKAQLVG 420
+ KIG+WW+KGEEIDLVALNE +K LFVEV+W+ L E E ++ +++L KK+ L+
Sbjct: 356 ---DYPKIGKWWYKGEEIDLVALNEREKKALFVEVKWRGLKEREAKRILKRLEKKSMLIN 412
Query: 421 LENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKDFELL 457
L+ W + YG++ +R+ GKE LR EGWLVWDL+DF L
Sbjct: 413 LDGWIKDYGVIARRVEGKESLRDEGWLVWDLEDFNSL 449
>pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (strain Orsay)
>gi|5458804|emb|CAB50291.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 315 bits (799), Expect = 6e-85
Identities = 174/460 (37%), Positives = 262/460 (56%), Gaps = 17/460 (3%)
Query: 2 FISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADNL 61
F+ RE+EL L+++ S + ++IYGRRR GKT L++E + + E + +
Sbjct: 5 FVDREDELKALEDQWNSTPS-LVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRERQI 63
Query: 62 KRFSERVAKYFDGDLLRKNPFQNWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASIL 121
+R E +A++F+ +L F +W F+YL K E+ ++ +DEF Y +K ++ + S L
Sbjct: 64 RRLREELAEHFNDELFLS--FNDWYPLFKYLASKVTEKTLIILDEFSYAIKSDRTIVSAL 121
Query: 122 QEYWDLKLSKSKIFLIICGSSITMM-EKLLGYKSPIYGRRTCQLKLKPMDFFSARKFLPR 180
Q WD SK + L++ GS I MM +++L Y SP+YGRRT LKP+ F++ KF
Sbjct: 122 QRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFFDS 181
Query: 181 YPIEDSLRAYGILGGTPAYLL---KFDD-KKSIEENLLSYFRPDSFLYQDALFILREELN 236
+ + L Y ++GG PAYL+ +++D ++ IEE L R + F Y + +L EL
Sbjct: 182 FEV--GLEMYMLVGGIPAYLIIASRYEDTRRFIEETFL---RTEGFFYDEPYILLSGELR 236
Query: 237 EPRNYFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSRK 296
E + YF+I+ A A G T EI + L+ + YL L+ L + RE+PI + ++
Sbjct: 237 ELKTYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPIARN--DKR 294
Query: 297 GRYYINDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLN 356
G Y + DP WF V N IE G + V ED + FEDV R+FLV LN
Sbjct: 295 GIYKLKDPMLLTWFSIVPKNRTGIELGI--ISYDDVKEDIQRIYGIRFEDVAREFLVELN 352
Query: 357 KESLLTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKA 416
+ L F +IGRWW+KGEEID+VA+NE K +L EV+WKELS+ E + ++ L +K
Sbjct: 353 RRGRLPFRFTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKF 412
Query: 417 QLVGLENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKDFEL 456
+L+ LE W + LV K + GK KLR G+ VWDL+D +L
Sbjct: 413 KLMNLEGWDASFALVAKNVHGKSKLREYGFNVWDLEDLKL 452
>pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii
>gi|3257682|dbj|BAA30365.1| (AP000005) 320aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 320
Score = 287 bits (727), Expect = 2e-76
Identities = 150/320 (46%), Positives = 210/320 (64%), Gaps = 7/320 (2%)
Query: 147 EKLLGYKSPIYGRRTCQLKLKPMDFFSARKFLPRYPIEDSLRAYGILGGTPAYLLKFDDK 206
EK+L YKSP+YGRRT LKL+PM+FF+ R+F P E+ + YG+ G P Y+++
Sbjct: 4 EKVLSYKSPLYGRRTGSLKLRPMNFFTLREFFPSCSWEELVEIYGMTDGIPFYIIQVKPP 63
Query: 207 --KSIEENLLSYFRPDSFLYQDALFILREELNEPRNYFAIMEAIAKGCTSLGEIMNETVL 264
+ +EE L + P SF + F+LR E +E Y I+EAIA G T+L EI + T L
Sbjct: 64 FWELLEEELKN---PISFFKDEVDFLLRYEFSEVTTYKRILEAIALGKTTLKEIKDFTGL 120
Query: 265 DRFTVGKYLSVLIDLDLVRREVPITESWKSRKGRYYINDPYFAFWFRYVLPNVDLIETGQ 324
+ YL LI+ DL+ REVPITE S+KGRYY+ D + AFWFR++ PN+ IE +
Sbjct: 121 RNSDITPYLRNLIEADLIVREVPITEKKTSKKGRYYVLDNFLAFWFRFIYPNLSRIE--E 178
Query: 325 GDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNKESLLTPSFIKIGRWWHKGEEIDLVALN 384
G V + ++ +YL VFE + RQFL+ LNK + L F KIGRWW+K EEID+VALN
Sbjct: 179 GIFNVDEIKGEYPRYLGWVFEKIARQFLIELNKINKLPFKFEKIGRWWYKEEEIDIVALN 238
Query: 385 EHKKSVLFVEVRWKELSENETRKTIRKLMKKAQLVGLENWKEYYGLVGKRIRGKEKLRSE 444
E +K L VEV+WK L E E R+ + L KK++L+GLE W++YYGL+ + I+ KE L +
Sbjct: 239 EREKKGLLVEVKWKTLKEREAREILEVLNKKSKLLGLEGWEKYYGLIAREIKRKEPLIED 298
Query: 445 GWLVWDLKDFELLDREFNKE 464
G+LVWDL+DFE + ++ ++E
Sbjct: 299 GYLVWDLEDFEEIVKQKSRE 318
>pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii
>gi|3257241|dbj|BAA29924.1| (AP000003) 319aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 319
Score = 280 bits (708), Expect = 3e-74
Identities = 142/324 (43%), Positives = 205/324 (62%), Gaps = 7/324 (2%)
Query: 136 LIICGSSITMMEKLLGYKSPIYGRRTCQLKLKPMDFFSARKFLPRYPIEDSLRAYGILGG 195
LI+CGS ++ ME +L KSPIYGRRT K++ M FF KF P IE +++ YG+ GG
Sbjct: 2 LILCGSLVSFMEGILSGKSPIYGRRTGTWKVEEMSFFDVLKFHP-IDIETAIKIYGVFGG 60
Query: 196 TPAYLLKFDDKKSIEENLLSYFRPDSFLYQDA-LFILREELNEPRNYFAIMEAIAKGCTS 254
P Y + +D K EN+ Y D ++L+EEL + YF+I+ AI+ G +
Sbjct: 61 VPQYWVDYDPGKDFWENIKDLVLSKGAKYYDEPKYLLKEELRDVSRYFSILRAISLGYSR 120
Query: 255 LGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSRKGRYYINDPYFAFWFRYVL 314
G+I + ++ ++GKYL+VL ++ +R E PI K+ Y IN+ +F FWFR+V
Sbjct: 121 FGQIADAARIETKSLGKYLNVLEEMGYIREEKPIVGRGKTV---YKINEHFFNFWFRFVF 177
Query: 315 PNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNKESLLTPSFIKIGRWWHK 374
P IE G +V+ + ++F+ YL VFE+++RQFL+ +NK L F KIGRWW+K
Sbjct: 178 PRRSEIEMGFD--VVEEIKKEFNNYLGPVFEEISRQFLIEMNKRKKLPFRFTKIGRWWYK 235
Query: 375 GEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKAQLVGLENWKEYYGLVGKR 434
GEEIDLVALNE +K LF+EV+WK L E K ++ L +KA+L GL +W + YG++ K
Sbjct: 236 GEEIDLVALNEDEKKALFIEVKWKNLERKEAYKILKDLKRKAELTGLHDWNKAYGIIAKS 295
Query: 435 IRGKEKLRSEGWLVWDLKDFELLD 458
I KE+LR EG+L WDL+DFEL++
Sbjct: 296 IMEKEELREEGFLAWDLRDFELIN 319
>pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (strain Orsay)
>gi|5458921|emb|CAB50408.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 472
Score = 277 bits (700), Expect = 3e-73
Identities = 171/463 (36%), Positives = 266/463 (56%), Gaps = 18/463 (3%)
Query: 1 MFISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADN 60
MF RE EL L E + F+V+YGRRR+GKTAL+ E ++ GIYL E EA
Sbjct: 9 MFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALL 68
Query: 61 LKRFSERVAKYFDGDL--LRKNPFQNWDAFFEYLYQKSGE-RVIVAIDEFPYLLKGNKAL 117
L+ F+ V L + F + + FE+L+ S + ++++ +DEF +L
Sbjct: 69 LEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSL 128
Query: 118 ASILQEYWDLKLSKSKIFLIICGSSITMMEKL-LGYKSPIYGRRTCQLKLKPMDFFSARK 176
S LQ+ WDLK S + LI GS + MM+++ + K P++GR +KLKP DF+ A
Sbjct: 129 FSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYN 188
Query: 177 FLPRYPIEDSLRAYGILGGTPAYLL---KFDDKKSIEENLLSYFRPDSFLYQDALFILRE 233
F+ P D + + LGG P YLL + + +IE +F S L ++ +L+
Sbjct: 189 FV-NIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREEGFNVLKL 247
Query: 234 ELNE-PRNYFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLID-LDLVRREVPITES 291
E R+YF+I+EA++ G + EI ++T L TVGKYLS L + + + +EVP TE
Sbjct: 248 EFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATED 307
Query: 292 -WKSRKGRYYINDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQ 350
K+RK Y+I D +F FWFR+V N+ +E G+ ++ + E+F ++ +E + R+
Sbjct: 308 PRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGRE 367
Query: 351 FLVRLNKESLLTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIR 410
F+ R++ L S +++GRWWHKGEEID++A NE K V EV+W +LS+ ++ +R
Sbjct: 368 FIRRID----LGFSPLRVGRWWHKGEEIDVIAYNEEK--VALFEVKWSDLSKARAKRLLR 421
Query: 411 KLMKKAQLVGLENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKD 453
L +K +LV L + YGL+ + + GKE+LR+ G+LV+DL D
Sbjct: 422 DLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLND 463
>pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii
>gi|3257257|dbj|BAA29940.1| (AP000003) 456aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 456
Score = 269 bits (680), Expect = 6e-71
Identities = 170/456 (37%), Positives = 251/456 (54%), Gaps = 28/456 (6%)
Query: 2 FISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADNL 61
FI RE E+ +L ER + F+V+YGRRR+GKT L+ E + + E + +
Sbjct: 3 FIDRELEMEIL-EREWENRPSFVVLYGRRRVGKTRLLKEFSKDKRTFFFTFPEAIKEVQM 61
Query: 62 KRFSERVAKYFDGDLLRKNPFQNWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASIL 121
K F + +A++ D RK ++W YL +K + +IV +DEF Y +K + + S L
Sbjct: 62 KEFKKTMAEFLGDDFARKLETRDWLDLLRYLAEKVDDCLIV-LDEFTYAIKSERKILSDL 120
Query: 122 QEYWDLKLSKSKIFLIICGSSITMM-EKLLGYKSPIYGRRTCQLKLKPMDFFSARKFLPR 180
Q WD LS+ K+ L+I GS + MM + +L Y SP+YGRRT + LKP D+ +A KF
Sbjct: 121 QRTWDDILSEKKVMLVISGSLLGMMWDDVLSYASPLYGRRTRSMNLKPFDYPNALKFFS- 179
Query: 181 YPIEDSLRAYGILGGTPAYLLKFDDKKSIEENLLSYFRPD-SFLYQDALFILREELNEPR 239
E +R Y ++GG P+YL ++EE + F D F Y + +L EEL E +
Sbjct: 180 -DPEFGIRVYMLVGGIPSYLKLAGRYNTVEEFIREEFLSDYGFFYDEPYVLLGEELRELK 238
Query: 240 NYFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSRKGRY 299
YF+I+ AIA+G L I N L +V Y+ L+ L LV RE PI S K Y
Sbjct: 239 TYFSILRAIAEGNRRLERIANFIGLPMRSVYPYVDTLVRLGLVERESPILGSRK--VSLY 296
Query: 300 YINDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNKES 359
I DP WF P + I +G L + + FE++ ++FL +
Sbjct: 297 RIKDPMLLTWFTLTYPQMAEISSGTAKL------DSLYKVYSIRFEELAKEFL------T 344
Query: 360 LLTP-SFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKAQ- 417
L P F +GRWW++GEEID+VAL + K ++ +EV+WK+LS+ + +R+L +K++
Sbjct: 345 LFRPIEFETLGRWWYRGEEIDIVALRKDKTTL--IEVKWKDLSKRSALRVLRELEEKSEK 402
Query: 418 LVGLENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKD 453
L +EN GL+ K +RGKEKLR EG+LVWDL+D
Sbjct: 403 LHPIEN----IGLIAKSVRGKEKLREEGYLVWDLED 434
>pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii
>gi|3257252|dbj|BAA29935.1| (AP000003) 323aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 323
Score = 245 bits (618), Expect = 1e-63
Identities = 139/328 (42%), Positives = 198/328 (59%), Gaps = 17/328 (5%)
Query: 136 LIICGSSITMME-KLLGYKSPIYGRRTCQLKLKPMDFFSARKFLPRYPIEDSLRAYGILG 194
L++ GS + +ME +L + SP+YGRRT +L+ + F + +F + PIE L+ Y +LG
Sbjct: 2 LVLSGSLMGIMEDNVLSHSSPLYGRRTAGFRLRSLGLFPSLRFF-KSPIE-GLKFYMLLG 59
Query: 195 GTPAYLLKFDDKKSIEENL-LSYFRPDSFLYQDALFILREELNEPRNYFAIMEAIAKGCT 253
G PAYL+ +++ E + + P+ + Y D +I+ EL E + YF+I+ A++ G
Sbjct: 60 GIPAYLIIASRYETVGEFVEREFLTPEGYFY-DEPYIVLSELKELKTYFSILSAMSSGRR 118
Query: 254 SLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSRKGRYYINDPYFAFWFRYV 313
EI +E L+ + YL LI L V RE+PI K ++G Y I+DP WF +
Sbjct: 119 RPSEIASEVGLEGRKIYPYLETLIRLGFVERELPIAR--KEKRGLYRISDPMLMSWFSLI 176
Query: 314 LPNVDLIETGQGDLLVKIVMEDFDQYLDGVF----EDVTRQFLVRLNKESLLTPSFIKIG 369
PN IE G I +E ++ L +F EDV+R+FLV +NK L F KIG
Sbjct: 177 YPNRTEIELGT------ITLERVEKILQRIFSFRFEDVSREFLVEMNKAGKLPFRFTKIG 230
Query: 370 RWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKAQLVGLENWKEYYG 429
RWW+KGEEIDLVALNE ++ LF+EV+WK+L E E + ++ L KKA LVGL+ W + YG
Sbjct: 231 RWWYKGEEIDLVALNEDEEKALFIEVKWKDLKEREVKGILKDLEKKAGLVGLDGWDKNYG 290
Query: 430 LVGKRIRGKEKLRSEGWLVWDLKDFELL 457
L+ K I KEKLR E +LVWDLKDF+ L
Sbjct: 291 LIEKSIERKEKLREENYLVWDLKDFDAL 318
>emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.]
Length = 350
Score = 240 bits (607), Expect = 2e-62
Identities = 134/345 (38%), Positives = 207/345 (59%), Gaps = 11/345 (3%)
Query: 2 FISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADNL 61
F++R EEL L+ +E K I++YGRRR+GKT LI+E ++ +Y L +E + L
Sbjct: 14 FVNRSEELEKLRAYLE--KRSLIIVYGRRRVGKTRLIIEALKDTPHVYHLCKEEEPRETL 71
Query: 62 KRFSERVAKYFDGDLLRKNPFQNWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASIL 121
S+++ ++P ++D FE L G + + +DEFP L+K + +L
Sbjct: 72 VSLSKKLYHATGDAQFLESPPSSFDELFELL---GGIGITLVLDEFPLLVKNYPRILGLL 128
Query: 122 QEYWDLKLSKSKIFLIICGSSITMMEKLLGYKSPIYGRRTCQLKLKPMDFFSARKFLPRY 181
QEYWD S +++CGSS++MM+ L Y SPI+GRRT +K+KP++F +F P Y
Sbjct: 129 QEYWDFGEGGS---VVLCGSSVSMMKGLTDYGSPIHGRRTISVKVKPLEFRHVGEFFPGY 185
Query: 182 PIEDSLRAYGILGGTPAYLLKFDDKKSIEENLLSYFRPDSFLYQDALFILREELNEPRNY 241
E+ +RAYG+L G P YLL+FD +S+EEN++ F +LY++A +LR EL + Y
Sbjct: 186 SPEELVRAYGVLDGIPEYLLRFDPSQSVEENVIREFFGRGYLYEEAELLLRYELRDLSTY 245
Query: 242 FAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPIT--ESWKSRKG-R 298
I+EAIA G TS EI +T +D + +YLS L +L+LV+RE P+ + + RKG R
Sbjct: 246 NTILEAIAAGYTSFNEIKTKTGMDGSKLSRYLSTLEELELVKREYPVLPGAAKRRRKGAR 305
Query: 299 YYINDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGV 343
Y ++D YFAF++ +V P + IE G D+ ++ F++YL V
Sbjct: 306 YGLSDNYFAFYYSFVYPFKEEIELGLLDVPLENFRRKFNRYLGRV 350
>pir||D75092 hypothetical protein PAB1620 - Pyrococcus abyssi (strain Orsay)
>gi|5458553|emb|CAB50041.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 243
Score = 236 bits (595), Expect = 5e-61
Identities = 111/236 (47%), Positives = 156/236 (66%), Gaps = 2/236 (0%)
Query: 219 PDSFLYQDALFILREELNEPRNYFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLID 278
P+SFL+++A +L EE EP Y+ ++EA+A+ T + EI L+ +YL +L D
Sbjct: 3 PNSFLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRILED 62
Query: 279 LDLVRREVPITESWKSRKGRYYINDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQ 338
LD+++RE+PI + K++KG Y D YFAFWFR+V P + IE+G + ++ F Q
Sbjct: 63 LDILKRELPIGK--KAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQ 120
Query: 339 YLDGVFEDVTRQFLVRLNKESLLTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWK 398
YL G FE++ RQFL+ L + L F KIGRWWHKGEEID+VALNE +K VL VEV+WK
Sbjct: 121 YLGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWK 180
Query: 399 ELSENETRKTIRKLMKKAQLVGLENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKDF 454
EL + E R +R L +KA+ + L W++ Y LV KR+ GK L+ EGW +WDL+DF
Sbjct: 181 ELRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLEDF 236
>gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 420
Score = 230 bits (581), Expect = 2e-59
Identities = 153/424 (36%), Positives = 232/424 (54%), Gaps = 46/424 (10%)
Query: 3 ISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADNLK 62
++RE EL LK+R+ S E I+IYGRRRIGKT LI+ + Y IY LA +E +NL+
Sbjct: 7 VNRERELQALKKRLSSNDLELIIIYGRRRIGKTFLIINAVNGYDFIYYLA---TEKNNLR 63
Query: 63 RFSERV-AKYFDGDLLRKNPFQNWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASIL 121
+F E +KY D ++ ++W+A F YL K I+ IDEFPY++K ++++ S
Sbjct: 64 KFKELTESKYEDIKYVK----EDWEAIFHYLRDK-----IIIIDEFPYMIKEDESILSTF 114
Query: 122 QEYWDLKLSKSKIFLIICGSSITMMEKLLGYKSPIYGRRTCQLKLKPMDFFSARKFLPRY 181
Q+ D L SK LI+ GSSI+MME + YKSP+YGRRT ++LK + F + F +
Sbjct: 115 QKIVDETLKGSKTKLILLGSSISMMEDAISYKSPLYGRRTASIELKELKFKDLKGF--NF 172
Query: 182 PIEDSLRAYGILGGTPAYLLKFDDK--KSIEENLLSYFRPDSFLYQDALFILREELNEPR 239
+ D++ YG GG P YL K K I L DSF+ + F+LR E +E
Sbjct: 173 SLIDAIHVYGFAGGVPFYLTKAKTPFLKWINAELKEV---DSFIKDEIDFMLRYEFSEIG 229
Query: 240 NYFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSRKG-R 298
Y I+ AI+ G +LGEI + V V YL+ L + ++ +E P +K +KG R
Sbjct: 230 TYKEILHAISSGKNTLGEI-KDFVRISGDVSSYLNKLEKIGIIGKEFP----YKMKKGAR 284
Query: 299 YYINDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNKE 358
YYI D + FWF ++ PN+ LIE G + +I ++++ YL +FE + R+++ + K
Sbjct: 285 YYIKDNFTLFWFTFIYPNLSLIEEG----IYEIKEDEYNVYLGRIFEKIAREYVEDVYK- 339
Query: 359 SLLTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKAQL 418
+K+ R W K EID+ + E +W E E K + +L +K +
Sbjct: 340 -------VKVERLWFKDVEIDIYG------DGIAGECKWSEGINGE--KVLYELKRKVED 384
Query: 419 VGLE 422
+GL+
Sbjct: 385 LGLD 388
>pir||E75058 hypothetical protein PAB1412 - Pyrococcus abyssi (strain Orsay)
>gi|5458875|emb|CAB50362.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 215
Score = 198 bits (497), Expect = 2e-49
Identities = 103/203 (50%), Positives = 145/203 (70%), Gaps = 4/203 (1%)
Query: 99 RVIVAIDEFPYLLKGNKALASILQEYWDLKLSKSKIFLIICGSSITMME-KLLGYKSPIY 157
RV++ IDEFP L++ + + S+LQ+ WDLKLS++ I LII GSS+++ME ++L YKSP+Y
Sbjct: 11 RVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPLY 70
Query: 158 GRRTCQLKLKPMDFFSARKFLPRYPIEDSLRAYGILGGTPAYLLKFDDKKSIEENLLS-Y 216
GRRT Q +L + FF +FLP Y IED ++ +G+ G PAYLL+F KS +EN++
Sbjct: 71 GRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVERV 130
Query: 217 FRPDSFLYQDALFILREELNEPRNYFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVL 276
+FLY++A F+LREEL EP NYFAI++AIA G GEI+N T LD+ V KYL+VL
Sbjct: 131 LFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTVL 190
Query: 277 IDLDLVRREVPITESWK--SRKG 297
L +V+REVP+T + K S++G
Sbjct: 191 QRLGIVKREVPVTATMKEVSKRG 213
>pir||D75058 hypothetical protein PAB1413 - Pyrococcus abyssi (strain Orsay)
>gi|5458874|emb|CAB50361.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 157
Score = 164 bits (412), Expect = 1e-39
Identities = 77/155 (49%), Positives = 106/155 (67%), Gaps = 3/155 (1%)
Query: 301 INDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNKESL 360
IND YFAFWFRYVLPN +E G + + + +DF+ YL +FE + R V L
Sbjct: 2 INDNYFAFWFRYVLPNKVYLEAGLAEDVWERSKDDFNIYLGLIFEKLVRNPEVFLRLTGF 61
Query: 361 LTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKAQLVG 420
F K+GRWW +GEE++++ALNE +K L +EV+WKELS+ E + +R L +KA+LVG
Sbjct: 62 ---HFTKLGRWWRRGEEVNVLALNEREKKALLIEVKWKELSKREAKGILRDLGRKAELVG 118
Query: 421 LENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKDFE 455
L++WK +YG+V K+I E+LR EGWL WDL+DFE
Sbjct: 119 LDSWKRFYGVVAKKIDDMEELREEGWLAWDLRDFE 153
>pir||A71133 hypothetical protein PHS026 - Pyrococcus horikoshii
>gi|3257240|dbj|BAA29923.1| (AP000003) 96aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 96
Score = 90.1 bits (220), Expect = 5e-17
Identities = 45/84 (53%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 2 FISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADNL 61
F+ RE ELN L+E SGKAE IVIYGRRRIGKT L+ + + + GIYLLA E NL
Sbjct: 9 FVDRERELNFLREHYHSGKAELIVIYGRRRIGKTYLLRKFLEETNGIYLLAEENE--TNL 66
Query: 62 KRFSERVAKYFDGDLLRKNPFQNW 85
+ FS R+A YF L++NP + W
Sbjct: 67 EDFSLRLADYFKDPFLKENPIRTW 90
>pir||H71134 hypothetical protein PH0844 - Pyrococcus horikoshii
>gi|3257255|dbj|BAA29938.1| (AP000003) 103aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 103
Score = 83.1 bits (202), Expect = 6e-15
Identities = 43/111 (38%), Positives = 64/111 (56%), Gaps = 9/111 (8%)
Query: 298 RYYINDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNK 357
RY I D Y+AFWFR+V PN L+E +++V D++ Y+ VFE + FL +
Sbjct: 2 RYEIADNYYAFWFRFVYPNRKLVERELYKEALELVKRDYNHYMGRVFEKASLDFLWK--- 58
Query: 358 ESLLTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKT 408
+F + GRWW + EEID+V + + F EV+WK+LSE E R++
Sbjct: 59 ----RFAFERAGRWWSREEEIDVVGVK--RGMAYFFEVKWKDLSEREARRS 103
>sp|Q57868|Y425_METJA HYPOTHETICAL PROTEIN MJ0425 >gi|2128315|pir||A64353 hypothetical
protein MJ0425 - Methanococcus jannaschii
>gi|1591128|gb|AAB98412.1| (U67494) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 140
Score = 78.4 bits (190), Expect = 2e-13
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 12/145 (8%)
Query: 313 VLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNKESLLTPSFIKIGRWW 372
V PN+ +E G + ++ ++Y +FE++ + L K ++ + +WW
Sbjct: 5 VYPNMADLEIGNVKEVYNKILASLNEYYGKMFENLVFEML----KLKIIDFGQKSVAKWW 60
Query: 373 HKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKAQLVGLENWKEYYGLVG 432
HKGEEID++A N +K ++ EV+WK+LS E + +R L +K V + KE Y ++
Sbjct: 61 HKGEEIDVLAYNNNK--MIAFEVKWKDLSFKEAKGILRDLERKLDKVDFDGEKECY-IIA 117
Query: 433 KRIRGKEKLRSEGWLVWDLKDFELL 457
K I GKEKL++ DL D E L
Sbjct: 118 KSIEGKEKLKA-----LDLMDLEKL 137
>pir||E75092 hypothetical protein PAB1619 - Pyrococcus abyssi (strain Orsay)
>gi|5458554|emb|CAB50042.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 207
Score = 75.7 bits (183), Expect = 1e-12
Identities = 53/197 (26%), Positives = 96/197 (47%), Gaps = 11/197 (5%)
Query: 24 IVIYGRRRIGKTALILELIRQYGGIYLLARETSEADNLKRFSERVAKYFDGDLLRKNPFQ 83
+++ GRRRIGK+ L+ E ++ I + NL + ++ + KYF+ + F
Sbjct: 13 VLVTGRRRIGKSRLVKEFLKGKRAISVQFERRLWEYNLMKLNKALGKYFN---IPTPNFS 69
Query: 84 NWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASILQEYWDLKLSKSKIFLIICGSSI 143
+ F ++ +S ER++ YLL+ + A Q D L +S I LI+ SS+
Sbjct: 70 TFSDAFRFVASQSKERLVA------YLLRYSDVEAEF-QSTVDEILEESNIMLILSASSM 122
Query: 144 TMMEK-LLGYKSPIYGRRTCQLKLKPMDFFSARKFLPRYPIEDSLRAYGILGGTPAYLLK 202
++++ Y S +YGR L L+P+ F ++ E++++ Y + G P YL
Sbjct: 123 GLLKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIPRYLEL 182
Query: 203 FDDKKSIEENLLSYFRP 219
F+ + EE ++F P
Sbjct: 183 FEGRNVEEEIKTNFFDP 199
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.142 0.419
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175965441
Number of Sequences: 2977
Number of extensions: 7740190
Number of successful extensions: 17809
Number of sequences better than 1.0e-10: 24
Number of HSP's better than 0.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 17707
Number of HSP's gapped (non-prelim): 24
length of query: 469
length of database: 189,106,746
effective HSP length: 54
effective length of query: 415
effective length of database: 156,788,448
effective search space: 65067205920
effective search space used: 65067205920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 167 (69.5 bits)