BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1517 (PAB1517) DE:Hypothetical protein
(145 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75038 hypothetical protein PAB1517 - Pyrococcus abyssi (st... 280 5e-75
sp|O58497|Y763_PYRHO HYPOTHETICAL PROTEIN PH0763 >gi|7429867|pir... 247 6e-65
sp|Q57637|Y173_METJA HYPOTHETICAL PROTEIN MJ0173 >gi|2128165|pir... 118 4e-26
sp|O27001|TFX_METTH DNA-BINDING PROTEIN TFX 88 4e-17
sp|P56811|TFX_METTM DNA-BINDING PROTEIN TFX >gi|4138235|emb|CAA0... 87 9e-17
pir||F69222 conserved hypothetical protein MTH916 - Methanobacte... 73 1e-12
>pir||H75038 hypothetical protein PAB1517 - Pyrococcus abyssi (strain Orsay)
>gi|5458718|emb|CAB50205.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 145
Score = 280 bits (709), Expect = 5e-75
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MKTFLTEQQIKVLVLRAKGLKQSEIARILKTTRANVSILEKRALEKIEKARNTLLLWEQI 60
MKTFLTEQQIKVLVLRAKGLKQSEIARILKTTRANVSILEKRALEKIEKARNTLLLWEQI
Sbjct: 1 MKTFLTEQQIKVLVLRAKGLKQSEIARILKTTRANVSILEKRALEKIEKARNTLLLWEQI 60
Query: 61 NSKVSVSVKAGEDIFTIPDRLFKEADKAGVKVPYSTAEIIAFLVEHAPIEDRLAKRDFVI 120
NSKVSVSVKAGEDIFTIPDRLFKEADKAGVKVPYSTAEIIAFLVEHAPIEDRLAKRDFVI
Sbjct: 61 NSKVSVSVKAGEDIFTIPDRLFKEADKAGVKVPYSTAEIIAFLVEHAPIEDRLAKRDFVI 120
Query: 121 FLDSKNRLRISECLINFVEEGIGND 145
FLDSKNRLRISECLINFVEEGIGND
Sbjct: 121 FLDSKNRLRISECLINFVEEGIGND 145
>sp|O58497|Y763_PYRHO HYPOTHETICAL PROTEIN PH0763 >gi|7429867|pir||D71124 hypothetical
protein PH0763 - Pyrococcus horikoshii
>gi|3257171|dbj|BAA29854.1| (AP000003) 167aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 167
Score = 247 bits (623), Expect = 6e-65
Identities = 125/139 (89%), Positives = 137/139 (97%)
Query: 1 MKTFLTEQQIKVLVLRAKGLKQSEIARILKTTRANVSILEKRALEKIEKARNTLLLWEQI 60
MKTFLTEQQIKVLVLRAKGLKQSEIA+ILKTTRANVSILEKRALEKIEKA+NTLLLWEQI
Sbjct: 25 MKTFLTEQQIKVLVLRAKGLKQSEIAKILKTTRANVSILEKRALEKIEKAKNTLLLWEQI 84
Query: 61 NSKVSVSVKAGEDIFTIPDRLFKEADKAGVKVPYSTAEIIAFLVEHAPIEDRLAKRDFVI 120
NSKV+V+VKAGEDIF++P++LFK+AD+AGVKVPYSTAEIIAFLVEHAPIE+RLAKRDFVI
Sbjct: 85 NSKVNVNVKAGEDIFSVPEKLFKKADEAGVKVPYSTAEIIAFLVEHAPIENRLAKRDFVI 144
Query: 121 FLDSKNRLRISECLINFVE 139
FLDSKNRLRIS+CLIN E
Sbjct: 145 FLDSKNRLRISDCLINLDE 163
>sp|Q57637|Y173_METJA HYPOTHETICAL PROTEIN MJ0173 >gi|2128165|pir||F64321 conserved
hypothetical protein MJ0173 - Methanococcus jannaschii
>gi|1498946|gb|AAB98158.1| (U67474) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 157
Score = 118 bits (292), Expect = 4e-26
Identities = 59/122 (48%), Positives = 89/122 (72%), Gaps = 2/122 (1%)
Query: 3 TFLTEQQIKVLVLRAKGLKQSEIARILKTTRANVSILEKRALEKIEKARNTLLLWEQINS 62
+FLT+ QIKVL LR KGL Q EIA++L T+RAN+S++EKRA E I+KA NT+ ++ +I +
Sbjct: 25 SFLTDTQIKVLKLRKKGLTQEEIAKMLGTSRANISMIEKRAKENIKKAYNTIKIYNRIMA 84
Query: 63 KVSVSVKAGEDIFTIPDRLFKEADKAGVKVPYSTAEIIAFLVEHAP--IEDRLAKRDFVI 120
+S+ ++ G D+ IPD +FK+AD+ G+KV Y+T E+I + E+A IE R K+ F I
Sbjct: 85 PLSIEIEEGTDVLEIPDIVFKKADEEGIKVKYNTLELIELIKENASEFIEKRTVKKKFKI 144
Query: 121 FL 122
++
Sbjct: 145 YI 146
>sp|O27001|TFX_METTH DNA-BINDING PROTEIN TFX
Length = 138
Score = 88.2 bits (215), Expect = 4e-17
Identities = 51/121 (42%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
Query: 2 KTFLTEQQIKVLVLRAKGLKQSEIARILKTTRANVSILEKRALEKIEKARNTLLLWEQIN 61
KTFLTE+Q VL +R +G Q +IAR LKTTR NVS +E++A+E IEK+RNTL + +
Sbjct: 4 KTFLTERQKTVLEMRERGWSQKKIARELKTTRQNVSAIERKAMENIEKSRNTLDFVKSLK 63
Query: 62 SKVSVSVKAGEDIFTIPDRLFKEADKAGVKVPYSTAEIIAFLVEHAP--IEDRLAKRDFV 119
S V + + G+ + I RL +E++K G+ V + + + + E A I R+ K DF
Sbjct: 64 SPVRILCRRGDTLDEIIKRLLEESNKEGIHVIHDSITLAFLIREKASHRIVHRVVKSDFE 123
Query: 120 I 120
I
Sbjct: 124 I 124
>sp|P56811|TFX_METTM DNA-BINDING PROTEIN TFX >gi|4138235|emb|CAA08778.1| (AJ009686) Tfx
protein [Methanobacterium thermoautotrophicum]
Length = 138
Score = 87.0 bits (212), Expect = 9e-17
Identities = 51/121 (42%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
Query: 2 KTFLTEQQIKVLVLRAKGLKQSEIARILKTTRANVSILEKRALEKIEKARNTLLLWEQIN 61
KTFLTE+Q VL +R +G Q +IAR LKTTR NVS +E++A+E IEK+RNTL + +
Sbjct: 4 KTFLTERQKTVLEMRERGWSQKKIARELKTTRQNVSAIERKAMENIEKSRNTLDFVKFLK 63
Query: 62 SKVSVSVKAGEDIFTIPDRLFKEADKAGVKVPYSTAEIIAFLVEHAP--IEDRLAKRDFV 119
S V + + G+ + I RL +E++K G+ V + + + + E A I R+ K DF
Sbjct: 64 SPVRILCRRGDTLDEIIKRLLEESNKEGIHVIHDSITLAFLIREKASHRIVHRVVKSDFE 123
Query: 120 I 120
I
Sbjct: 124 I 124
>pir||F69222 conserved hypothetical protein MTH916 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622013|gb|AAB85414.1| (AE000867) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 122
Score = 73.4 bits (177), Expect = 1e-12
Identities = 42/108 (38%), Positives = 65/108 (59%), Gaps = 2/108 (1%)
Query: 15 LRAKGLKQSEIARILKTTRANVSILEKRALEKIEKARNTLLLWEQINSKVSVSVKAGEDI 74
+R +G Q +IAR LKTTR NVS +E++A+E IEK+RNTL + + S V + + G+ +
Sbjct: 1 MRERGWSQKKIARELKTTRQNVSAIERKAMENIEKSRNTLDFVKSLKSPVRILCRRGDTL 60
Query: 75 FTIPDRLFKEADKAGVKVPYSTAEIIAFLVEHAP--IEDRLAKRDFVI 120
I RL +E++K G+ V + + + + E A I R+ K DF I
Sbjct: 61 DEIIKRLLEESNKEGIHVIHDSITLAFLIREKASHRIVHRVVKSDFEI 108
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.136 0.365
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41746636
Number of Sequences: 2977
Number of extensions: 1388944
Number of successful extensions: 4730
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4724
Number of HSP's gapped (non-prelim): 6
length of query: 145
length of database: 189,106,746
effective HSP length: 58
effective length of query: 87
effective length of database: 154,394,500
effective search space: 13432321500
effective search space used: 13432321500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)