BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1522 (PAB1522) DE:Hypothetical protein
         (171 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75037 hypothetical protein PAB1522 - Pyrococcus abyssi (st...   340  5e-93
pir||D71125 hypothetical protein PH0770 - Pyrococcus horikoshii ...   194  4e-49

>pir||H75037 hypothetical protein PAB1522 - Pyrococcus abyssi (strain Orsay)
           >gi|5458710|emb|CAB50197.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 171
           
 Score =  340 bits (863), Expect = 5e-93
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MTPKFKNFKHDNSGQVETYLFEVISKYTMLEIKTKFGKLCIAKVKLASESIERALNLCND 60
           MTPKFKNFKHDNSGQVETYLFEVISKYTMLEIKTKFGKLCIAKVKLASESIERALNLCND
Sbjct: 1   MTPKFKNFKHDNSGQVETYLFEVISKYTMLEIKTKFGKLCIAKVKLASESIERALNLCND 60

Query: 61  NCQIVSAKCHEEVIFATILAIKAFSSGRNTAKTIKGEILLRLAGVKQIKDAIKIIGARKG 120
           NCQIVSAKCHEEVIFATILAIKAFSSGRNTAKTIKGEILLRLAGVKQIKDAIKIIGARKG
Sbjct: 61  NCQIVSAKCHEEVIFATILAIKAFSSGRNTAKTIKGEILLRLAGVKQIKDAIKIIGARKG 120

Query: 121 ENLIIYFGVSDPCSSLKDFISSLGLREEPLKPCDEDEVKRGFERAAIIEAL 171
           ENLIIYFGVSDPCSSLKDFISSLGLREEPLKPCDEDEVKRGFERAAIIEAL
Sbjct: 121 ENLIIYFGVSDPCSSLKDFISSLGLREEPLKPCDEDEVKRGFERAAIIEAL 171


>pir||D71125 hypothetical protein PH0770 - Pyrococcus horikoshii
           >gi|3257179|dbj|BAA29862.1| (AP000003) 154aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 154
           
 Score =  194 bits (489), Expect = 4e-49
 Identities = 89/152 (58%), Positives = 119/152 (77%)

Query: 19  YLFEVISKYTMLEIKTKFGKLCIAKVKLASESIERALNLCNDNCQIVSAKCHEEVIFATI 78
           YL  VISKYTMLEIKTKFG +CIAKV L  + + + L  C++ CQ++  KC+EEV+FATI
Sbjct: 2   YLSVVISKYTMLEIKTKFGNICIAKVHLNEDDVGKVLEACDEQCQVMRTKCYEEVVFATI 61

Query: 79  LAIKAFSSGRNTAKTIKGEILLRLAGVKQIKDAIKIIGARKGENLIIYFGVSDPCSSLKD 138
           LA+K+F+S RNTAKT++GEILLRLAGVKQIKDA+K++GA KGEN I+ F V +PC  L+ 
Sbjct: 62  LALKSFNSERNTAKTVRGEILLRLAGVKQIKDALKLVGASKGENFIVIFNVDNPCDKLRR 121

Query: 139 FISSLGLREEPLKPCDEDEVKRGFERAAIIEA 170
            + SLG+RE  L  C ++E+K+  E+ A++EA
Sbjct: 122 LLQSLGIREIELNKCPQEELKKSLEKMAMVEA 153


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.137    0.385 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57063568
Number of Sequences: 2977
Number of extensions: 2000056
Number of successful extensions: 4688
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4686
Number of HSP's gapped (non-prelim): 2
length of query: 171
length of database: 189,106,746
effective HSP length: 56
effective length of query: 115
effective length of database: 155,591,474
effective search space: 17893019510
effective search space used: 17893019510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)