BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1524 (PAB1524) DE:hexuronate transporter related protein
         (401 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75037 hexuronate transporter related protein PAB1524 - Pyr...   802  0.0
pir||F71125 hypothetical protein PH0772 - Pyrococcus horikoshii ...   675  0.0

>pir||F75037 hexuronate transporter related protein PAB1524 - Pyrococcus abyssi
           (strain Orsay) >gi|5458708|emb|CAB50195.1| (AJ248287)
           hexuronate transporter related protein [Pyrococcus
           abyssi]
           Length = 401
           
 Score =  802 bits (2049), Expect = 0.0
 Identities = 401/401 (100%), Positives = 401/401 (100%)

Query: 1   MDSEKRWTFVLLDTLLMAAGFGTLTFMGVAKPDIIRHFGISSDAYELQHIAYVFGLFVAF 60
           MDSEKRWTFVLLDTLLMAAGFGTLTFMGVAKPDIIRHFGISSDAYELQHIAYVFGLFVAF
Sbjct: 1   MDSEKRWTFVLLDTLLMAAGFGTLTFMGVAKPDIIRHFGISSDAYELQHIAYVFGLFVAF 60

Query: 61  LIGHTKLYEGSFKRSVGIAISWAAIPQMLIPFTGNWNVVVFLRFIQGFVVGLVPLFSTQI 120
           LIGHTKLYEGSFKRSVGIAISWAAIPQMLIPFTGNWNVVVFLRFIQGFVVGLVPLFSTQI
Sbjct: 61  LIGHTKLYEGSFKRSVGIAISWAAIPQMLIPFTGNWNVVVFLRFIQGFVVGLVPLFSTQI 120

Query: 121 ARYFVSERPFAKGIILSGIFWGGVFGSISARYMLGRVPWKESFLITGIIMYIVYAIWFAL 180
           ARYFVSERPFAKGIILSGIFWGGVFGSISARYMLGRVPWKESFLITGIIMYIVYAIWFAL
Sbjct: 121 ARYFVSERPFAKGIILSGIFWGGVFGSISARYMLGRVPWKESFLITGIIMYIVYAIWFAL 180

Query: 181 TEDFEIRHKKASEGGINIWKLPFTWVLGFTFFPALWVIFTIIGFSSKLGYDAGWTKDQVS 240
           TEDFEIRHKKASEGGINIWKLPFTWVLGFTFFPALWVIFTIIGFSSKLGYDAGWTKDQVS
Sbjct: 181 TEDFEIRHKKASEGGINIWKLPFTWVLGFTFFPALWVIFTIIGFSSKLGYDAGWTKDQVS 240

Query: 241 TLSTLLSISKALWSIGFGYLGYLLSKKNTTPRGLFNAIVKVMITAYLVALIGMIIYSYGM 300
           TLSTLLSISKALWSIGFGYLGYLLSKKNTTPRGLFNAIVKVMITAYLVALIGMIIYSYGM
Sbjct: 241 TLSTLLSISKALWSIGFGYLGYLLSKKNTTPRGLFNAIVKVMITAYLVALIGMIIYSYGM 300

Query: 301 LSRSYSIVLASVVLVGALQGTGPAFWTSAPATYPETVVARANFALGLISNSANAVAPTVT 360
           LSRSYSIVLASVVLVGALQGTGPAFWTSAPATYPETVVARANFALGLISNSANAVAPTVT
Sbjct: 301 LSRSYSIVLASVVLVGALQGTGPAFWTSAPATYPETVVARANFALGLISNSANAVAPTVT 360

Query: 361 EVLSRYSEGLALAELSLMPVVGIVTLLIVSRMRLPVEEFKE 401
           EVLSRYSEGLALAELSLMPVVGIVTLLIVSRMRLPVEEFKE
Sbjct: 361 EVLSRYSEGLALAELSLMPVVGIVTLLIVSRMRLPVEEFKE 401


>pir||F71125 hypothetical protein PH0772 - Pyrococcus horikoshii
           >gi|3257181|dbj|BAA29864.1| (AP000003) 397aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 397
           
 Score =  675 bits (1723), Expect = 0.0
 Identities = 319/392 (81%), Positives = 365/392 (92%)

Query: 6   RWTFVLLDTLLMAAGFGTLTFMGVAKPDIIRHFGISSDAYELQHIAYVFGLFVAFLIGHT 65
           RW  V+LDT+LM AGFGTLTFMGVAKPDII HFGISS+ +ELQHIAYVFGLF+AFL+G T
Sbjct: 3   RWRAVILDTILMTAGFGTLTFMGVAKPDIIHHFGISSNEFELQHIAYVFGLFIAFLLGST 62

Query: 66  KLYEGSFKRSVGIAISWAAIPQMLIPFTGNWNVVVFLRFIQGFVVGLVPLFSTQIARYFV 125
           ++YEGSF+RSVGIAISWAAIPQMLIPF GNWNVVVFLRFIQGFVVGLVPLFSTQIARYFV
Sbjct: 63  RIYEGSFRRSVGIAISWAAIPQMLIPFVGNWNVVVFLRFIQGFVVGLVPLFSTQIARYFV 122

Query: 126 SERPFAKGIILSGIFWGGVFGSISARYMLGRVPWKESFLITGIIMYIVYAIWFALTEDFE 185
           SERPFAKGIILSGIFWGGVFGSISA Y+LGR+PWKESF+ITG+IMY+VY IW+ LT+DFE
Sbjct: 123 SERPFAKGIILSGIFWGGVFGSISASYILGRIPWKESFVITGLIMYLVYIIWYFLTDDFE 182

Query: 186 IRHKKASEGGINIWKLPFTWVLGFTFFPALWVIFTIIGFSSKLGYDAGWTKDQVSTLSTL 245
           I+H+K  E  ++IWKLPFTWVLGFTFFPALWVIFTIIGFS+KLGYD GW+K+QV+TLST 
Sbjct: 183 IKHQKEGEATVSIWKLPFTWVLGFTFFPALWVIFTIIGFSAKLGYDMGWSKEQVATLSTS 242

Query: 246 LSISKALWSIGFGYLGYLLSKKNTTPRGLFNAIVKVMITAYLVALIGMIIYSYGMLSRSY 305
           L+ISKALWSIGFGYLGYLLS+KNTTPRGLF AIVKVMI AY+V+ +G++ YS G+LS +Y
Sbjct: 243 LNISKALWSIGFGYLGYLLSRKNTTPRGLFEAIVKVMILAYIVSFLGLVTYSKGILSGNY 302

Query: 306 SIVLASVVLVGALQGTGPAFWTSAPATYPETVVARANFALGLISNSANAVAPTVTEVLSR 365
            +VLASV+LVGALQGTGPAFWTSAPA YPE++V RANFALGLISNSANA+APT+TEVL+R
Sbjct: 303 PLVLASVILVGALQGTGPAFWTSAPAVYPESLVTRANFALGLISNSANAIAPTITEVLAR 362

Query: 366 YSEGLALAELSLMPVVGIVTLLIVSRMRLPVE 397
           YS  LALAELS+MP+VGI+TL+IVSRM+LP+E
Sbjct: 363 YSIALALAELSIMPLVGILTLIIVSRMKLPIE 394


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.142    0.435 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146258792
Number of Sequences: 2977
Number of extensions: 6202151
Number of successful extensions: 22618
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22613
Number of HSP's gapped (non-prelim): 2
length of query: 401
length of database: 189,106,746
effective HSP length: 52
effective length of query: 349
effective length of database: 157,985,422
effective search space: 55136912278
effective search space used: 55136912278
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 166 (69.1 bits)