BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1527 (PAB1527) DE:AMINO ACID CARRIER PROTEIN
(517 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75036 amino acid carrier protein PAB1527 - Pyrococcus abys... 1029 0.0
pir||G71126 probable alanine transport protein - Pyrococcus hori... 966 0.0
pir||B81228 sodium/alanine symporter, probable NMB0177 [imported... 367 e-100
pir||B82001 probable amino-acid transporter NMA0091 [imported] -... 366 e-100
pir||F83328 probable sodium:alanine symporter PA2533 [imported] ... 365 e-100
dbj|BAB07752.1| (AP001520) amino acid transporter [Bacillus halo... 344 1e-93
dbj|BAB07645.1| (AP001520) amino acid transporter [Bacillus halo... 333 2e-90
pir||H82200 sodium/alanine symporter VC1422 [imported] - Vibrio ... 332 8e-90
pir||G71877 probable sodium/alanine symporter - Helicobacter pyl... 311 1e-83
pir||F64637 D-alanine/glycine transport protein, sodium-dependen... 310 2e-83
pir||D71327 probable D-alanine glycine permease (dagA) - syphili... 307 2e-82
sp|P44917|Y883_HAEIN HYPOTHETICAL PROTEIN HI0883 >gi|1073973|pir... 297 2e-79
gi|10957430 Na(+)-linked D-alanine glycine permease [Deinococcus... 272 1e-71
pir||F81058 amino acid symporter, probable NMB1647 [imported] - ... 266 4e-70
pir||E81817 probable sodium/alanine symporter NMA1901 [imported]... 264 2e-69
pir||A83190 probable amino acid permease PA3641 [imported] - Pse... 259 4e-68
pir||D82279 sodium/alanine symporter VC0784 [imported] - Vibrio ... 257 3e-67
emb|CAC01597.1| (AL391041) putative amino acid transport integra... 254 2e-66
sp|P44555|YAAJ_HAEIN HYPOTHETICAL PROTEIN HI0183 >gi|1074300|pir... 253 3e-66
dbj|BAB05003.1| (AP001511) amino acid carrier protein (sodium/al... 250 4e-65
pir||H82085 sodium/alanine symporter VC2356 [imported] - Vibrio ... 250 4e-65
pir||G69809 aminoacid carrier protein homolog yflA - Bacillus su... 249 5e-65
pir||C69972 sodium/proton-dependent alanine carrier pr homolog y... 242 8e-63
dbj|BAB05491.1| (AP001513) amino acid carrier protein (sodium/al... 239 5e-62
sp|Q45068|ALST_BACSU AMINO ACID CARRIER PROTEIN ALST >gi|7443815... 230 3e-59
dbj|BAB06433.1| (AP001516) amino acid carrier protein (sodium/al... 229 6e-59
pir||C69751 sodium/proton-dependent alanine transporter homolog ... 222 1e-56
dbj|BAA74514.1| (AB022867) D-alanine glycine permease [Prevotell... 221 2e-56
sp|P30144|DAGA_ALTHA NA(+)-LINKED D-ALANINE GLYCINE PERMEASE >gi... 219 6e-56
pir||G81363 probable amino-acid transport protein Cj0903c [impor... 215 7e-55
pir||F83363 probable AGCS sodium/alanine/glycine symporter PA225... 213 4e-54
pir||G81227 probable amino-acid transport protein NMA0073 [impor... 210 4e-53
sp|P30143|YAAJ_ECOLI HYPOTHETICAL 51.7 KD PROTEIN IN THRC-TALB I... 207 2e-52
sp|P30145|ALCP_BACP3 SODIUM/PROTON-DEPENDENT ALANINE CARRIER PRO... 203 3e-51
pir||G71255 probable sodium/proton-dependent alanine transporter... 185 1e-45
pir||F71477 probable D-Ala/Gly permease - Chlamydia trachomatis ... 175 2e-42
pir||B72024 d-alanine/glycine permease - Chlamydophila pneumonia... 168 1e-40
pir||C71518 probable permease - Chlamydia trachomatis (serotype ... 156 5e-37
gb|AAF73592.1| (AE002337) sodium/alanine symporter family protei... 147 3e-34
pir||A72067 d-ala/gly permease - Chlamydophila pneumoniae (strai... 129 8e-29
gb|AAF73532.1| (AE002278) sodium/alanine symporter family protei... 125 2e-27
pir||PC4092 alanine carrier protein - thermophilic bacterium PS3... 76 9e-13
emb|CAA60205.1| (X86480) hypD [Clostridium perfringens] 72 2e-11
>pir||H75036 amino acid carrier protein PAB1527 - Pyrococcus abyssi (strain
Orsay) >gi|5458702|emb|CAB50189.1| (AJ248287) AMINO ACID
CARRIER PROTEIN [Pyrococcus abyssi]
Length = 517
Score = 1029 bits (2632), Expect = 0.0
Identities = 517/517 (100%), Positives = 517/517 (100%)
Query: 1 MGAIMDFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGE 60
MGAIMDFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGE
Sbjct: 1 MGAIMDFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGE 60
Query: 61 GDITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVA 120
GDITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVA
Sbjct: 61 GDITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVA 120
Query: 121 FRGKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVL 180
FRGKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVL
Sbjct: 121 FRGKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVL 180
Query: 181 AFILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAF 240
AFILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAF
Sbjct: 181 AFILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAF 240
Query: 241 SIPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAI 300
SIPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAI
Sbjct: 241 SIPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAI 300
Query: 301 AVIINDAFTGKAVAGGAIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAM 360
AVIINDAFTGKAVAGGAIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAM
Sbjct: 301 AVIINDAFTGKAVAGGAIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAM 360
Query: 361 LGPFIDTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFA 420
LGPFIDTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFA
Sbjct: 361 LGPFIDTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFA 420
Query: 421 YSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLEDVW 480
YSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLEDVW
Sbjct: 421 YSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLEDVW 480
Query: 481 NFSDMMNGLMAIPNLIGLIVLYPIIKQYTEEFIAKNP 517
NFSDMMNGLMAIPNLIGLIVLYPIIKQYTEEFIAKNP
Sbjct: 481 NFSDMMNGLMAIPNLIGLIVLYPIIKQYTEEFIAKNP 517
>pir||G71126 probable alanine transport protein - Pyrococcus horikoshii
>gi|3257190|dbj|BAA29873.1| (AP000003) 526aa long
hypothetical alanine transport protein [Pyrococcus
horikoshii]
Length = 526
Score = 966 bits (2469), Expect = 0.0
Identities = 470/517 (90%), Positives = 500/517 (95%)
Query: 1 MGAIMDFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGE 60
MG IMDFVNWLDGEVWGPPMIVLLLGTGLLLTI+LKGIQF RLGWSI++TLFEGRKKTGE
Sbjct: 10 MGGIMDFVNWLDGEVWGPPMIVLLLGTGLLLTIILKGIQFTRLGWSIKYTLFEGRKKTGE 69
Query: 61 GDITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVA 120
GDITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITAL GMATRYSEGLLGVA
Sbjct: 70 GDITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALFGMATRYSEGLLGVA 129
Query: 121 FRGKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVL 180
FR KLPDGTMIGG+F+ LEKGF++VKGTG+SR IAS+ TILFAIF+AKDGLGL+GGLR L
Sbjct: 130 FRDKLPDGTMIGGSFHNLEKGFSQVKGTGVSRTIASLLTILFAIFIAKDGLGLSGGLRAL 189
Query: 181 AFILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAF 240
AF +AILFA LGLALLKEDYLP IGKILA+LFALFASIAAFGIGNMTQANSVADA++TAF
Sbjct: 190 AFAIAILFAILGLALLKEDYLPAIGKILAILFALFASIAAFGIGNMTQANSVADALKTAF 249
Query: 241 SIPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAI 300
IPEW+TGLALA+LTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAI
Sbjct: 250 GIPEWITGLALAILTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAI 309
Query: 301 AVIINDAFTGKAVAGGAIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAM 360
A+I+ DAFTGKAVAGGA+GQVIIWGVKRGLFSNEAGLGTATLAHAAA+TDHP+RQAHVAM
Sbjct: 310 AIIVKDAFTGKAVAGGAVGQVIIWGVKRGLFSNEAGLGTATLAHAAARTDHPARQAHVAM 369
Query: 361 LGPFIDTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFA 420
LGPFIDTLIICSLTG+SIVVT AY K+PDLNGAPLTQAAFA+AFG++GEIMVAIGIILFA
Sbjct: 370 LGPFIDTLIICSLTGVSIVVTEAYTKFPDLNGAPLTQAAFAQAFGHMGEIMVAIGIILFA 429
Query: 421 YSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLEDVW 480
YSTILAWSFYGRQNVMYL KW+TQDP+KFANLYPKLHLVYNLLFVIFIY+GAVKPLEDVW
Sbjct: 430 YSTILAWSFYGRQNVMYLGKWVTQDPKKFANLYPKLHLVYNLLFVIFIYIGAVKPLEDVW 489
Query: 481 NFSDMMNGLMAIPNLIGLIVLYPIIKQYTEEFIAKNP 517
NFSDMMNGLMAIPNLI LIVLYPIIKQYTEEFIAKNP
Sbjct: 490 NFSDMMNGLMAIPNLIALIVLYPIIKQYTEEFIAKNP 526
>pir||B81228 sodium/alanine symporter, probable NMB0177 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225396|gb|AAF40634.1| (AE002375) sodium/alanine
symporter, putative [Neisseria meningitidis MC58]
Length = 463
Score = 367 bits (931), Expect = e-100
Identities = 218/517 (42%), Positives = 304/517 (58%), Gaps = 80/517 (15%)
Query: 7 FVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRK-KTGEG---D 62
F + G VWGP M++LL+GTG+LLT++LKG+QF LG++++ +K K+GEG D
Sbjct: 11 FFETVSGWVWGPLMLMLLVGTGILLTVLLKGLQFTMLGYALKQAFMPPKKHKSGEGHEGD 70
Query: 63 ITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFR 122
I+ F ALM +S T+G GNIAGVATA+ GGPGA+FWMW+TA+ GMAT+Y EG+L V +R
Sbjct: 71 ISHFAALMTALSATIGTGNIAGVATAVVTGGPGAVFWMWMTAIFGMATKYGEGVLAVKYR 130
Query: 123 GKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAF 182
G M GG ++EKG L K+
Sbjct: 131 VNNSKGEMSGGPMYYIEKG------------------------LGKNWKW---------- 156
Query: 183 ILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFSI 242
+A+ FA G FAS FGIG+ Q+NSVA A++T+F I
Sbjct: 157 -MAVAFALFG---------------------TFAS---FGIGSSVQSNSVAQAVQTSFGI 191
Query: 243 PEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAV 302
TG+ L VLT +VV+GGIK I + A +VP MA+ Y L + + + + A+ +
Sbjct: 192 EPAYTGITLTVLTAVVVLGGIKGIAKAASFIVPAMAVFYVLGGLSIIAINSDALMPAVKL 251
Query: 303 IINDAFTGKAVAGGAIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLG 362
I +DAF+ +AVAGGAIG VI +GV RG+FSNEAG+G+A +A AAAKTDHP RQA V+M G
Sbjct: 252 IFSDAFSAQAVAGGAIGTVIRYGVARGVFSNEAGMGSAPIAAAAAKTDHPVRQALVSMTG 311
Query: 363 PFIDTLIICSLTGISIV--VTGAYAKY--PDLNGAPLTQAAFAEAFGYIGEIMVAIGIIL 418
F+DT+++CS+TGI +V + GA ++ P+++GA LT F + IG +V IG+I
Sbjct: 312 TFLDTIVVCSITGIVLVMGLLGAGGEFVKPEVSGAALTTVTFQKMLPGIGGWIVTIGLIF 371
Query: 419 FAYSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLED 478
FAYSTIL W +YG + +Y+ +KFA L Y + +V + +G V L+
Sbjct: 372 FAYSTILGWCYYGEKCAVYVF------GEKFAGL-------YRVGYVSSVMLGTVLSLDL 418
Query: 479 VWNFSDMMNGLMAIPNLIGLIVLYPIIKQYTEEFIAK 515
VW SD NGLMA+PNLI L+++ +I T +F K
Sbjct: 419 VWLASDTFNGLMALPNLIALLLMAKVIVNETRDFKQK 455
>pir||B82001 probable amino-acid transporter NMA0091 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7378864|emb|CAB83407.1| (AL162752) putative
amino-acid transporter [Neisseria meningitidis Z2491]
Length = 463
Score = 366 bits (930), Expect = e-100
Identities = 218/517 (42%), Positives = 299/517 (57%), Gaps = 80/517 (15%)
Query: 7 FVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTG----EGD 62
F + G VWGP M++LL+GTG+LLT++LKG+QF LG++++ +K EGD
Sbjct: 11 FFETVSGWVWGPLMLMLLVGTGILLTVLLKGLQFTMLGYALKQAFVPSKKHEDGEGHEGD 70
Query: 63 ITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFR 122
I+ F ALM +S T+G GNIAGVATA+ GGPGA+FWMWITA+ GMAT+Y EG+L V +R
Sbjct: 71 ISHFAALMTALSATIGTGNIAGVATAVVTGGPGAVFWMWITAIFGMATKYGEGVLAVKYR 130
Query: 123 GKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAF 182
G M GG ++EK GLG LAF
Sbjct: 131 VTNSKGEMSGGPMYYIEK-----------------------------GLGKNWKWMALAF 161
Query: 183 ILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFSI 242
L F FAS FGIG+ Q+NSVA A++T+F I
Sbjct: 162 AL---------------------------FGTFAS---FGIGSSVQSNSVAQAVQTSFGI 191
Query: 243 PEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAV 302
TG+ L VLT IVV+GGIK I + A +VP MA+ Y + I + + + + A+ +
Sbjct: 192 EPAYTGITLTVLTAIVVLGGIKGIAKAASFIVPAMAVFYVVGGISIIVINSDALMPAVNL 251
Query: 303 IINDAFTGKAVAGGAIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLG 362
I +DAF+ +AVAGGAIG VI +GV RG+FSNEAG+ +A +A AAAKTDHP RQA V+M G
Sbjct: 252 IFSDAFSAQAVAGGAIGTVIRYGVARGVFSNEAGMCSAPIAAAAAKTDHPVRQALVSMTG 311
Query: 363 PFIDTLIICSLTGISIV--VTGAYAKY--PDLNGAPLTQAAFAEAFGYIGEIMVAIGIIL 418
F+DT+++CS+TGI +V + GA ++ P+++GA LT F + IG +V IG+I
Sbjct: 312 TFLDTIVVCSITGIVLVMGLLGAGGEFVKPEVSGAALTTVTFQKMLPGIGGWIVTIGLIF 371
Query: 419 FAYSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLED 478
FAYSTIL W +YG + +Y+ +KFA L Y + +V + +G V L+
Sbjct: 372 FAYSTILGWCYYGEKCAVYVF------GEKFAGL-------YRVGYVSSVMLGTVLSLDL 418
Query: 479 VWNFSDMMNGLMAIPNLIGLIVLYPIIKQYTEEFIAK 515
VW SD NGLMA+PNLI L+++ +I T +F K
Sbjct: 419 VWLASDTFNGLMALPNLIALLLMAKVIVNETRDFKQK 455
>pir||F83328 probable sodium:alanine symporter PA2533 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948590|gb|AAG05921.1|AE004681_3 (AE004681) probable
sodium:alanine symporter [Pseudomonas aeruginosa]
Length = 449
Score = 365 bits (928), Expect = e-100
Identities = 217/521 (41%), Positives = 300/521 (56%), Gaps = 81/521 (15%)
Query: 1 MGAIMDFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGE 60
M ++ +V L+G VWGP M+VL+LGTGL L + LK + RLG R L++GR K E
Sbjct: 1 MESLQKWVVDLNGVVWGPLMLVLILGTGLYLMLGLKFMPLVRLGVGFRL-LWQGRSKDDE 59
Query: 61 --GDITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLG 118
G+I+PFQALM ++ TVG GNIAGVATAI GGPGALFWMW TALVGMAT++SE +L
Sbjct: 60 SSGEISPFQALMTCLAATVGTGNIAGVATAIFLGGPGALFWMWCTALVGMATKFSEVVLA 119
Query: 119 VAFRGKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLR 178
V +R K +GG ++ K+GLG
Sbjct: 120 VHYREKDERNEHVGGP-----------------------------MYAIKNGLGKR---- 146
Query: 179 VLAFILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRT 238
+A LG A FALF +A FGIGNM Q NS+ADA+
Sbjct: 147 ---------WAWLGAA-----------------FALFGGLAGFGIGNMVQVNSMADALEV 180
Query: 239 AFSIPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPH 298
+F +P+WVTG+A ++T +V++GGI+RIG+VAE LVPFM + Y + ++ V + A IP
Sbjct: 181 SFGVPDWVTGVATMLVTGLVILGGIRRIGKVAEALVPFMCVGYIVASVIVLVVHAEAIPG 240
Query: 299 AIAVIINDAFTGKAVAGGAIGQVII----WGVKRGLFSNEAGLGTATLAHAAAKTDHPSR 354
A +I AFT A GG G ++ +GV RG+FSNEAGLGTA +A AA T R
Sbjct: 241 AFQLIFTHAFTPIAATGGFAGAAVMAAIRFGVARGIFSNEAGLGTAGIAQAAGTTHSAVR 300
Query: 355 QAHVAMLGPFIDTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAI 414
+ MLG FIDTLIICSLTG++I+ +G + +GA L+ AAF A +G ++++
Sbjct: 301 SGLIGMLGTFIDTLIICSLTGLAIITSGVWTS--GASGAALSSAAFEAAMPGVGHYILSL 358
Query: 415 GIILFAYSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVK 474
+++FAY+TIL WS+YG + YLA + L + +++ + I GA+
Sbjct: 359 ALVVFAYTTILGWSYYGERCWEYLAG-------------TRAILPFRIVWTLAIPFGAMT 405
Query: 475 PLEDVWNFSDMMNGLMAIPNLIGLIVLYPIIKQYTEEFIAK 515
L+ W +D +N LMAIPNLI L++L P++ + T E+ AK
Sbjct: 406 QLDFAWLVADTLNALMAIPNLIALLLLSPVVFRLTREYFAK 446
>dbj|BAB07752.1| (AP001520) amino acid transporter [Bacillus halodurans]
Length = 460
Score = 344 bits (873), Expect = 1e-93
Identities = 205/509 (40%), Positives = 290/509 (56%), Gaps = 77/509 (15%)
Query: 6 DFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGEGDITP 65
+ + + VWGPP+++LL+GTG+ LT L +QF L ++++ + K EGDI+
Sbjct: 7 EIIGSISSFVWGPPLLILLVGTGIYLTFRLSFLQFSTLPYALKLAFSRKQDKKSEGDISH 66
Query: 66 FQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRGKL 125
FQ+LM ++ TVG GNIAGVATA+ GGPGA+FWMW++AL GMAT+Y+E +L V +R K
Sbjct: 67 FQSLMTALAATVGTGNIAGVATAVVLGGPGAVFWMWLSALFGMATKYAEAILAVKYRDKD 126
Query: 126 PDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFILA 185
G M GG +LEKG ++ G I+FA+F A G+ G + + A
Sbjct: 127 KRGQMAGGPMYYLEKGLG-MRWLG----------IVFAVFAAVAAFGI-GNMVQSNSVAA 174
Query: 186 ILFAALGLALLKEDYLPTI-GKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFSIPE 244
++ + ++ P I G ILA+L
Sbjct: 175 VIESNWNIS-------PWITGIILAIL--------------------------------- 194
Query: 245 WVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVII 304
TGL V++GGI+ IG +VP MA+ Y + + + +P A+ +I
Sbjct: 195 --TGL--------VILGGIRGIGRTVSFIVPVMALFYVGAGLVIILGNLSLVPSAVGLIF 244
Query: 305 NDAFTGKAVAGGAIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLGPF 364
+DAFTG+A+AGGAIG VI +GV RG+FSNEAGLG+A +A AAAKTD+P RQA V+M F
Sbjct: 245 SDAFTGQAMAGGAIGVVIQYGVARGVFSNEAGLGSAPIAAAAAKTDYPGRQALVSMTQVF 304
Query: 365 IDTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFAYSTI 424
IDT++ICS+TGI++V+ Y NGA LT F G G ++VAIG+I FAYSTI
Sbjct: 305 IDTIVICSITGIALVMGNLYMN--GENGAALTSTTFEHFLGPAGAVIVAIGLIFFAYSTI 362
Query: 425 LAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLEDVWNFSD 484
L WS+YG + + YL K T LVY ++FV+ + +GA L+ VW +D
Sbjct: 363 LGWSYYGDRCIYYLFKSQT------------AILVYRVVFVLAVALGAGASLDLVWGVAD 410
Query: 485 MMNGLMAIPNLIGLIVLYPIIKQYTEEFI 513
+MNGLMA+PNLIGL+ L ++ T F+
Sbjct: 411 IMNGLMAVPNLIGLLGLSGVVVAETHRFL 439
>dbj|BAB07645.1| (AP001520) amino acid transporter [Bacillus halodurans]
Length = 475
Score = 333 bits (846), Expect = 2e-90
Identities = 200/527 (37%), Positives = 276/527 (51%), Gaps = 92/527 (17%)
Query: 4 IMDFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRL--GWSIRFTLFEGRKKTGEG 61
++ + ++G +WGPP ++LL GTGL LTIVL+G+QFRRL + I F + + EG
Sbjct: 3 VLKMLEQINGVLWGPPSLILLFGTGLFLTIVLRGLQFRRLLYAFKIGFGKEDSKDAAAEG 62
Query: 62 DITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAF 121
D++ F+ALM ++ T+G GNIAGVATAI GGPGA+FWMWI L+GMAT+Y+E LL V +
Sbjct: 63 DVSHFKALMTALAATIGNGNIAGVATAITLGGPGAIFWMWIVGLLGMATKYAEALLAVKY 122
Query: 122 RGKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLA 181
R K G G ++E+G + I FA F A
Sbjct: 123 RVKNAKGEYSSGPMYYIERGLGQK---------FKWLAIAFAFFGA-------------- 159
Query: 182 FILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFS 241
FAAL GIGN Q+N++AD + +FS
Sbjct: 160 ------FAAL------------------------------GIGNSVQSNTIADVTKNSFS 183
Query: 242 IPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIA 301
+P W+TG+ L L ++V GGI+RI VA VP MA +Y A + I I A
Sbjct: 184 MPHWLTGVLLVALVSVIVFGGIQRISTVASFFVPIMAFLYMGGATLILILNYDMILPAFG 243
Query: 302 VIINDAFTGKAVAGGAIG----QVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAH 357
+I AF A AGG +G + I GV RG+FSNEAGLGTA L A+ DHP +QA
Sbjct: 244 LIFYYAFNPVAAAGGFLGIVVSEAIRNGVARGIFSNEAGLGTAALIAGNARADHPVKQAL 303
Query: 358 VAMLGPFIDTLIICSLTGISIVVTGAY----------AKYPDLNGAPLTQAAFAEAFGYI 407
VAM G FI T+I+C++TG+++++TG + L G LT AAF G +
Sbjct: 304 VAMTGTFIVTIIVCTMTGLTLLITGFWDPSGGLLSGVPHDATLEGGALTSAAFGSVLGIV 363
Query: 408 GEIMVAIGIILFAYSTILAWSFYGRQNVMYL--AKWITQDPQKFANLYPKLHLVYNLLFV 465
GE +V+ +I F +STI+ W YG + YL +K I Y L+++
Sbjct: 364 GEYIVSFSVIFFGFSTIVGWYVYGEKCFEYLVGSKGIAS---------------YRLVYI 408
Query: 466 IFIYVGAVKPLEDVWNFSDMMNGLMAIPNLIGLIVLYPIIKQYTEEF 512
+G V L VW F+DM N LM IPNLIGL++L+ +I T ++
Sbjct: 409 AACGIGTVANLSTVWAFADMANALMMIPNLIGLLLLWKVIVNETNDY 455
>pir||H82200 sodium/alanine symporter VC1422 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9655920|gb|AAF94579.1| (AE004221)
sodium/alanine symporter [Vibrio cholerae]
Length = 458
Score = 332 bits (841), Expect = 8e-90
Identities = 190/520 (36%), Positives = 286/520 (54%), Gaps = 81/520 (15%)
Query: 1 MGAIMDFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGE 60
M + F+ +D VWGPP+++LL+GTG+ T L +QFRRL ++ + +
Sbjct: 1 MNNLQSFLQTVDSLVWGPPLLILLVGTGVYFTFRLGLLQFRRLPTALAMVFGREKSSDKQ 60
Query: 61 GDITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVA 120
GD++ F AL +S T+G GNI GVATAI GGPGALFWMW+ AL GMAT+Y+E LL V
Sbjct: 61 GDVSSFAALCTALSATIGTGNIVGVATAIKLGGPGALFWMWLAALFGMATKYAECLLAVK 120
Query: 121 FRGKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVL 180
+R G M+GG +L G V + +LFA+F
Sbjct: 121 YRQIDDKGQMVGGPMYYLRDG-----------VSSKTLAVLFAVF--------------- 154
Query: 181 AFILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAF 240
A+G+A FGIG Q N++ DA + +F
Sbjct: 155 ---------AVGVA-------------------------CFGIGTFPQVNAILDATQISF 180
Query: 241 SIPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAI 300
+P + + L VL IV IGGI+ I +VA +VP MA+ Y + + V + A ++ A+
Sbjct: 181 GVPREASAVVLTVLVAIVTIGGIQSIAKVAGKVVPAMALFYIIACLSVIVTNADKLADAV 240
Query: 301 AVIINDAFTGKAVAGGAIGQVIIW----GVKRGLFSNEAGLGTATLAHAAAKTDHPSRQA 356
+++ AFT A GG +G I+ G+ RG+FSNE+GLG+A +A AAAKTD Q
Sbjct: 241 ELVLVSAFTSTAATGGFLGASIMLAIQSGIARGVFSNESGLGSAPMAAAAAKTDSCVEQG 300
Query: 357 HVAMLGPFIDTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFG--YIGEIMVAI 414
++M G F DT+IIC++TG+++++TGA+ DL+GA +T AFA IG ++V+I
Sbjct: 301 LISMTGTFFDTIIICTMTGLALILTGAWQS--DLSGAAMTTYAFATGLNAQTIGPMLVSI 358
Query: 415 GIILFAYSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVK 474
G++ FA++TIL W++YG + +++L K L Y ++F+ I GA
Sbjct: 359 GLMFFAFTTILGWNYYGERCMVFL-------------FGTKAVLPYKIVFIGLIASGAFL 405
Query: 475 PLEDVWNFSDMMNGLMAIPNLIGLIVLYPIIKQYTEEFIA 514
L+ +W +D++NGLMAIPNLIGL+ L ++ + T+++ A
Sbjct: 406 HLDLIWIIADIVNGLMAIPNLIGLVALRHVVVEETKQYFA 445
>pir||G71877 probable sodium/alanine symporter - Helicobacter pylori (strain
J99) >gi|4155453|gb|AAD06457.1| (AE001517) putative
SODIUM/ALANINE SYMPORTER [Helicobacter pylori J99]
Length = 450
Score = 311 bits (788), Expect = 1e-83
Identities = 192/524 (36%), Positives = 276/524 (52%), Gaps = 85/524 (16%)
Query: 1 MGAIMDFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGE 60
M I V L VWG PM +LL+GTGL LT L+G+QF ++ ++I+ LF+ ++ +
Sbjct: 1 METIDSVVRLLSNLVWGIPMQILLVGTGLFLTFYLRGLQFSKIFYAIKI-LFD-KESQSK 58
Query: 61 GDITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVA 120
GDI+ F ALM ++ TVGIG+I GVATAI GPGA+FWMW+T LVGMAT+YSEG
Sbjct: 59 GDISQFSALMLSLGATVGIGSIVGVATAISIAGPGAVFWMWVTGLVGMATKYSEG----- 113
Query: 121 FRGKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVL 180
IL + K G GG
Sbjct: 114 ---------------------------------------ILAVKYREKGAFGYNGG---- 130
Query: 181 AFILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAF 240
+ + GL + K LA+ FA+F IA+ G GNMTQ+N+V+ +
Sbjct: 131 ----PMYYIKNGLNMPK----------LAMAFAIFTIIASIGTGNMTQSNAVSSILSEQA 176
Query: 241 SIPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAI 300
++P WV+GL L +LT ++VIGGIK IG+ L P M ++Y + I + + AI
Sbjct: 177 NLPNWVSGLLLTLLTAVIVIGGIKSIGKFTSYLAPVMVLLYLIAIIYIIVSHFDLALQAI 236
Query: 301 AVIINDAFTGKAVAGGAIGQVII----WGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQA 356
+I +AF K V GGA G ++ GV RGL+SNEAGLG++ + A+A+T HP RQA
Sbjct: 237 KLIFEEAFNPKPVVGGASGTLVATMIKTGVARGLYSNEAGLGSSAIIAASAQTHHPVRQA 296
Query: 357 HVAMLGPFIDTLIICSLTGISIVVTGAY----AKYPDLNGAPLTQAAFAEAFGYIGEIMV 412
V+ML FI TL++CS T I++ Y L+ LT + G +G +++
Sbjct: 297 LVSMLQTFIVTLVVCSATASVILMAPEYNTLLPNGEKLSANLLTLKSTEYFLGSLGTVVI 356
Query: 413 AIGIILFAYSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGA 472
+I FAYSTI+ W++YG + Y K Y L+F+ + VGA
Sbjct: 357 FTTMIFFAYSTIIGWAYYGEKCAEYA-------------FGEKKVKYYRLIFLASVMVGA 403
Query: 473 VKPLEDVWNFSDMMNGLMAIPNLIGLIVLYPIIKQYTEEFIAKN 516
+ ++ VWN +D+ NGLMAIPNLI LI+L+ ++ T + +K+
Sbjct: 404 MAKIDFVWNLADLSNGLMAIPNLIALILLHKVVYSETRWYFSKH 447
>pir||F64637 D-alanine/glycine transport protein, sodium-dependent -
Helicobacter pylori (strain 26695)
>gi|2314080|gb|AAD07987.1| (AE000603) D-alanine glycine
permease (dagA) [Helicobacter pylori 26695]
Length = 450
Score = 310 bits (786), Expect = 2e-83
Identities = 194/524 (37%), Positives = 275/524 (52%), Gaps = 85/524 (16%)
Query: 1 MGAIMDFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGE 60
M I V L VWG PM +LL+GTGL LT L+G+QF ++ ++I+ LF+ ++ +
Sbjct: 1 METIDSVVRLLSNLVWGIPMQILLVGTGLFLTFYLRGLQFSKIFYAIKI-LFD-KESQSK 58
Query: 61 GDITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVA 120
GDI+ F ALM ++ TVGIG+I GVATAI GPGA+FWMW+T LVGMAT+YSEG
Sbjct: 59 GDISQFSALMLSLGATVGIGSIVGVATAISIAGPGAVFWMWVTGLVGMATKYSEG----- 113
Query: 121 FRGKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVL 180
IL + K G GG
Sbjct: 114 ---------------------------------------ILAVKYREKGAFGYNGG---- 130
Query: 181 AFILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAF 240
+ + GL + K LA+ FA+F IA+ G GNMTQ+N+V+ +
Sbjct: 131 ----PMYYIKNGLNMPK----------LAMAFAIFTIIASIGTGNMTQSNAVSSILSEQA 176
Query: 241 SIPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAI 300
++P WV+GL L +LT +VIGGIK IG+ L P M ++Y + I + + AI
Sbjct: 177 NLPNWVSGLLLTLLTAFIVIGGIKSIGKFTSYLAPVMVLLYLIAIIYIIVSHFDLALQAI 236
Query: 301 AVIINDAFTGKAVAGGAIGQVII----WGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQA 356
+I +AF K V GGA G +I GV RGL+SNEAGLG++ + A+A+T HP RQA
Sbjct: 237 KLIFEEAFNPKPVVGGASGALIATMIKTGVARGLYSNEAGLGSSAIIAASAQTRHPVRQA 296
Query: 357 HVAMLGPFIDTLIICSLTGISIVVTGAY----AKYPDLNGAPLTQAAFAEAFGYIGEIMV 412
V+ML FI TLI+CS T I++ Y L+ LT + G +G +++
Sbjct: 297 LVSMLQTFIVTLIVCSATASVILMAPEYNTLLPNGEKLSANLLTLKSTEYFLGSLGTVVI 356
Query: 413 AIGIILFAYSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGA 472
+I FAYSTI+ W++YG + Y K Y L+F+ + VGA
Sbjct: 357 FTTMIFFAYSTIIGWAYYGEKCTEYA-------------FGEKKVKYYRLIFLASVMVGA 403
Query: 473 VKPLEDVWNFSDMMNGLMAIPNLIGLIVLYPIIKQYTEEFIAKN 516
+ ++ VWN +D+ NGLMAIPNLI LI+L+ ++ T + +K+
Sbjct: 404 MAKIDFVWNLADLSNGLMAIPNLIALILLHKVVYSETRWYFSKH 447
>pir||D71327 probable D-alanine glycine permease (dagA) - syphilis spirochete
>gi|3322698|gb|AAC65402.1| (AE001219) D-alanine glycine
permease (dagA) [Treponema pallidum]
Length = 451
Score = 307 bits (778), Expect = 2e-82
Identities = 189/521 (36%), Positives = 274/521 (52%), Gaps = 79/521 (15%)
Query: 1 MGAIMDFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLF-EGRKKTG 59
MG + W+ VW PM+VLLLGTG +T+ +K RL + +R T+ G KK G
Sbjct: 1 MGVVEWVGEWMHAVVWSFPMVVLLLGTGCYVTVCMKFFPVVRLWYVLRQTIGGRGGKKGG 60
Query: 60 EGDITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGV 119
G+++ F+A+ ++ T+G GNI GVATAI GGPGA+FW+W+T + GM T++ E +L V
Sbjct: 61 SGEVSAFRAVSTALAATLGSGNIVGVATAIAIGGPGAIFWIWVTGIFGMGTKFVEVVLAV 120
Query: 120 AFRGKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRV 179
+R + DG +GG +L KDG+G+ G
Sbjct: 121 YYRRQTGDGRFVGGPMYYL-----------------------------KDGVGVPG---- 147
Query: 180 LAFILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTA 239
A +LA LF +F+ IA+FGIGNMTQ+NSVA
Sbjct: 148 -AGVLASLF------------------------CIFSVIASFGIGNMTQSNSVALVFEDV 182
Query: 240 FSIPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHA 299
F + VTG L VL +V +GG+K I V ++VP MAI+Y + + Q+
Sbjct: 183 FCVDVRVTGAVLMVLVGLVSVGGLKSISWVTGVMVPGMAILYVCVGVVLVCCNTRQLVPV 242
Query: 300 IAVIINDAFTGKAVAGGAIG----QVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQ 355
I++ AF G A GG G Q I G+ RG+ NEAGLGTA +AHAAA TDHP RQ
Sbjct: 243 CWDIVSGAFAGTAAVGGFAGSVVRQAIAVGISRGVAVNEAGLGTAPIAHAAAITDHPVRQ 302
Query: 356 AHVAMLGPFIDTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGY-IGEIMVAI 414
+ F+ T+++ S+T +I++TG + +GA LT +F + IG+ +V +
Sbjct: 303 GLWGIFEVFVGTMVVSSVTAFAILLTGVW--QGGASGAALTVQSFERGLPFGIGQYVVGV 360
Query: 415 GIILFAYSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVK 474
+ LFA++T+L W +YG + +L P++ +Y +++ F+YVGAV
Sbjct: 361 SVPLFAFTTMLGWLYYGERCAEFLCG-------------PRVCPLYRAVWLPFVYVGAVG 407
Query: 475 PLEDVWNFSDMMNGLMAIPNLIGLIVLYPIIKQYTEEFIAK 515
L VWN SD NGLMA+PNL+GL+ L + EEF A+
Sbjct: 408 SLSSVWNISDAFNGLMALPNLVGLLFLARQGMRLREEFFAQ 448
>sp|P44917|Y883_HAEIN HYPOTHETICAL PROTEIN HI0883 >gi|1073973|pir||H64099 probable amino
acid transport protein HI0883, sodium-dependent -
Haemophilus influenzae (strain Rd KW20)
>gi|1573900|gb|AAC22541.1| (U32770) amino acid carrier
protein, putative [Haemophilus influenzae Rd]
Length = 456
Score = 297 bits (752), Expect = 2e-79
Identities = 185/519 (35%), Positives = 292/519 (55%), Gaps = 85/519 (16%)
Query: 4 IMDFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGEGDI 63
I ++ +D +WG P+++LL GTGL LT+ L IQ R L ++ + LF+ + K G+GD+
Sbjct: 3 IESILSAIDSFIWGAPLLILLSGTGLYLTLRLGFIQIRYLPRALGY-LFK-KDKGGKGDV 60
Query: 64 TPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRG 123
+ F AL ++ T+G GNI GVATA+ GGPGA+FWMW+ A LLG+A +
Sbjct: 61 SSFAALCTALAATIGTGNIVGVATAVQAGGPGAIFWMWLVA-----------LLGMATK- 108
Query: 124 KLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLG-LAGGLRVLAF 182
+AE +L + +D G +AGG
Sbjct: 109 ------------------YAEC--------------LLAVKYRVRDKNGFMAGG------ 130
Query: 183 ILAILFAALGLALLKEDYLPTIGKILAVLFALFA-SIAAFGIGNMTQANSVADAIRTAFS 241
+ + GL + + LA LFALF +A FGIG Q N++ A++ F+
Sbjct: 131 --PMYYIERGLGI----------RWLAKLFALFGVMVAFFGIGTFPQVNAITHAMQDTFN 178
Query: 242 IPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIA 301
IP VT + + +L ++++GG+KRI + ++VPFMAI+Y ++ + + ++P AI
Sbjct: 179 IPVLVTAIIVTLLVGLIILGGVKRIATASSVIVPFMAILYVTTSLVIILLNIEKVPDAIL 238
Query: 302 VIINDAFTGKAVAGGAIG----QVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAH 357
+II+ AF +A GGA+G + I GV RG+FSNE+GLG+A +A AAA+T P RQ
Sbjct: 239 LIIDSAFDPQAALGGAVGLTVMKAIQSGVARGIFSNESGLGSAPIAAAAAQTREPVRQGL 298
Query: 358 VAMLGPFIDTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFG-YIGEIMVAIGI 416
++M G F+DT+I+C++TGI +V+TGA+ P+L GA +T AFA+ G IG +V +G+
Sbjct: 299 ISMTGTFLDTIIVCTMTGIVLVLTGAW-NNPELAGATVTNYAFAQGLGTSIGATIVTVGL 357
Query: 417 ILFAYSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPL 476
+ FA++TIL W +YG + +YL + + +Y L +++ + +GA L
Sbjct: 358 LFFAFTTILGWCYYGERCFVYL-------------VGIRGVKLYRLAYIMLVGLGAFLHL 404
Query: 477 EDVWNFSDMMNGLMAIPNLIGLIVLYPIIKQYTEEFIAK 515
+W +D++NGLMA PNLI LI L +I + T+++ +
Sbjct: 405 NLIWIIADIVNGLMAFPNLIALIGLRKVIIEETKDYFQR 443
>gi|10957430 Na(+)-linked D-alanine glycine permease [Deinococcus radiodurans]
>gi|7473196|pir||H75632 Na(+)-linked D-alanine glycine
permease - Deinococcus radiodurans (strain R1)
>gi|6460859|gb|AAF12563.1|AE001826_32 (AE001826)
Na(+)-linked D-alanine glycine permease [Deinococcus
radiodurans]
Length = 547
Score = 272 bits (687), Expect = 1e-71
Identities = 176/512 (34%), Positives = 263/512 (50%), Gaps = 80/512 (15%)
Query: 13 GEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGR---KKTGEGDITPFQAL 69
GE P ++V L ++ T+ + + G+ L GR G +T FQAL
Sbjct: 98 GEAQVPLIVVWLAVAAIVCTLSFRFVNI--WGFKHGIDLVRGRYGNDADAPGMVTHFQAL 155
Query: 70 MATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRGKLPDGT 129
+SGTVG+GNIAGVA A+ GGPGA FWM + L+ M+T++ E LGV +R PDG
Sbjct: 156 TTAVSGTVGLGNIAGVAVALSLGGPGATFWMILVGLLSMSTKFVECTLGVKYRRINPDGR 215
Query: 130 MIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFILAILFA 189
+ GG +L +G AE+ G AG
Sbjct: 216 VDGGPMFYLTRGLAEI--------------------------GKAG-------------- 235
Query: 190 ALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFSIPE----- 244
+G++L +AL A+ G GNM Q+N A I A P
Sbjct: 236 --------------LGRVLGPFYALCMIFASLGAGNMFQSNQAAQQIINATGGPASPLSG 281
Query: 245 --WVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAV 302
W+ GL LA+L V++GGI+ I V LVP MA IY + I + +P A +
Sbjct: 282 SAWLIGLGLALLVGAVILGGIRAIANVTSKLVPAMAAIYIVSIILILSLNFSALPAAFSA 341
Query: 303 IINDAFTGKAVAGGAIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLG 362
I AF + +AGG IG V+I G++R FSNEAG+G+A +AH+ KT P + VA+L
Sbjct: 342 IWQGAFAPQGIAGGFIG-VMIQGMRRATFSNEAGIGSAAIAHSPVKTYRPVTEGFVALLE 400
Query: 363 PFIDTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFAYS 422
PFIDT++IC++T ++++VTGAYA+ D+ G +T AAF + ++ AI + LFA+S
Sbjct: 401 PFIDTVVICTMTALALIVTGAYAQ-TDVAGVAMTNAAFRSVSPLLSSVL-AIAVALFAFS 458
Query: 423 TILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLEDVWNF 482
T++++++YG + V YL P + A ++ L+F+ F+ +GA L V N
Sbjct: 459 TMISYAYYGTRAVRYLL-----GPSELAT------NLFKLVFLSFVVIGASMSLGAVVNL 507
Query: 483 SDMMNGLMAIPNLIGLIVLYPIIKQYTEEFIA 514
SD + + +IPN+IGL +L P++ + E + A
Sbjct: 508 SDALLFIASIPNIIGLYLLLPVVHRELESYWA 539
>pir||F81058 amino acid symporter, probable NMB1647 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226898|gb|AAF41996.1| (AE002515) amino acid
symporter, putative [Neisseria meningitidis MC58]
Length = 472
Score = 266 bits (673), Expect = 4e-70
Identities = 172/509 (33%), Positives = 261/509 (50%), Gaps = 80/509 (15%)
Query: 15 VWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGEGD---ITPFQALMA 71
+W +I LLG GL T+ L Q +LG + ++F G G+ D ++ FQAL
Sbjct: 16 LWDYLLIYALLGIGLFFTLYLGAPQITKLGAGFK-SVFGGLFAKGDKDDKSLSQFQALAV 74
Query: 72 TISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRGKLPDGTMI 131
IS +G GN+AGVATAI GGPGA+FWMW++A++GM+T ++E LL +R + G I
Sbjct: 75 AISAQIGTGNVAGVATAITAGGPGAIFWMWVSAVLGMSTIFAEALLAQKYR-VVSHGKYI 133
Query: 132 GGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFILAILFAAL 191
GG ++ G G G +R ++ F+I A+ +A +G A +A + I F
Sbjct: 134 GGPAFYITHGLTPKIGRGAARFLSGFFSI--ALIIALGFIGNATQANSIASAVTIAFDVP 191
Query: 192 GLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFSIPEWVTGLAL 251
LA +G +LAVL +
Sbjct: 192 SLA---------VGIVLAVLAGM------------------------------------- 205
Query: 252 AVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVIINDAFTGK 311
VVIGG+ RI +A+ +VPFMA++Y L A+ + +F+ I I AF +
Sbjct: 206 ------VVIGGVNRIANIAQFVVPFMAVVYILCAVVILFEFSDHIVPMFNHIFTAAFNPE 259
Query: 312 AVAGGAIG----QVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLGPFIDT 367
AV GGA G + I +GV RGLFSNEAG+G+ AHA A HP +Q A +G FIDT
Sbjct: 260 AVLGGAAGIGMREAIRFGVARGLFSNEAGMGSTPHAHATADVKHPVQQGMAAFVGVFIDT 319
Query: 368 LIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFAYSTILAW 427
+++C+ T + I++T A GA +TQ AF +AF G ++A+ + FA++TI+ W
Sbjct: 320 ILVCTATALIILLTD--ANLSGEQGAAVTQFAFNKAFPGFGSQLLAVCLTFFAFTTIIGW 377
Query: 428 SFYGRQNVMYLAKWITQDPQKFANLYPKLHL-VYNLLFVIFIYVGAVKPLEDVWNFSDMM 486
++G N+ + L+ HL +Y L ++ I +G + ++ VW+ SDM
Sbjct: 378 YYFGESNIRF--------------LFRGRHLGIYRALVLLAIVLGTLGKVDLVWSLSDMF 423
Query: 487 NGLMAIPNLIGLIVLYPIIKQYTEEFIAK 515
NG M IPNLI L +L I+ ++++A+
Sbjct: 424 NGFMVIPNLIALFLLRKEIRAIYDDYLAQ 452
>pir||E81817 probable sodium/alanine symporter NMA1901 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7380535|emb|CAB85122.1| (AL162757) putative
sodium:alanine symporter [Neisseria meningitidis Z2491]
Length = 472
Score = 264 bits (668), Expect = 2e-69
Identities = 172/509 (33%), Positives = 260/509 (50%), Gaps = 80/509 (15%)
Query: 15 VWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGEGD---ITPFQALMA 71
+W +I LLG GL T+ L Q +LG + ++F G G+ D ++ FQAL
Sbjct: 16 LWDYLLIYALLGIGLFFTLYLGAPQITKLGAGFK-SVFGGLFAKGDKDDKSLSQFQALAV 74
Query: 72 TISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRGKLPDGTMI 131
IS +G GN+AGVATAI GGPGA+FWMW++A++GM+T ++E LL +R + G I
Sbjct: 75 AISAQIGTGNVAGVATAITAGGPGAIFWMWVSAVLGMSTIFAEALLAQKYR-VVSHGKYI 133
Query: 132 GGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFILAILFAAL 191
GG ++ G G G +R ++ F+I A+ +A +G A +A + I F
Sbjct: 134 GGPAFYITHGLTPKIGRGAARFLSGFFSI--ALIIALGFIGNATQANSIASAVTIAFDVP 191
Query: 192 GLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFSIPEWVTGLAL 251
LA +G +LAVL +
Sbjct: 192 SLA---------VGIVLAVLAGM------------------------------------- 205
Query: 252 AVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVIINDAFTGK 311
VVIGG+ RI +A+ +VPFMA++Y L A+ + +F+ I I AF +
Sbjct: 206 ------VVIGGVNRIANIAQFVVPFMAVVYILCAVVILFEFSDYIVPMFNHIFTAAFNPE 259
Query: 312 AVAGGAIG----QVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLGPFIDT 367
AV GGA G + I +GV RGLFSNEAG+G+ AHA A HP +Q A +G FIDT
Sbjct: 260 AVLGGAAGIGMREAIRFGVARGLFSNEAGMGSTPHAHATADVKHPVQQGMAAFVGVFIDT 319
Query: 368 LIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFAYSTILAW 427
+++C+ T + I++T A GA +TQ AF +AF G ++A+ + FA +TI+ W
Sbjct: 320 ILVCTATALIILLTD--ANLSGEQGAAVTQFAFNKAFPGFGSQLLAVCLTFFALTTIIGW 377
Query: 428 SFYGRQNVMYLAKWITQDPQKFANLYPKLHL-VYNLLFVIFIYVGAVKPLEDVWNFSDMM 486
++G N+ + L+ HL +Y L ++ I +G + ++ VW+ SDM
Sbjct: 378 YYFGESNIRF--------------LFRGRHLGIYRALVLLAIVLGTLGKVDLVWSLSDMF 423
Query: 487 NGLMAIPNLIGLIVLYPIIKQYTEEFIAK 515
NG M IPNLI L +L I+ ++++A+
Sbjct: 424 NGFMVIPNLIALFLLRKEIRAIYDDYLAQ 452
>pir||A83190 probable amino acid permease PA3641 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949801|gb|AAG07029.1|AE004784_2 (AE004784) probable
amino acid permease [Pseudomonas aeruginosa]
Length = 471
Score = 259 bits (656), Expect = 4e-68
Identities = 165/510 (32%), Positives = 263/510 (51%), Gaps = 80/510 (15%)
Query: 8 VNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGEGDITPFQ 67
V+ L+G +WG +I LL+G GL T+ L IQFR G + F++ +G +++ + I+ FQ
Sbjct: 9 VDLLNGLIWGKILIWLLVGCGLYFTVRLGLIQFRHFGHT--FSVLKGSRQSDDSGISSFQ 66
Query: 68 ALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRGKLPD 127
AL +++ VG GN+AGVA AI GGPGA+FWMW AL
Sbjct: 67 ALCTSLAARVGTGNVAGVAVAITLGGPGAVFWMWAIAL---------------------- 104
Query: 128 GTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFILAIL 187
+G F+E A+ +F +D G G
Sbjct: 105 ---VGMATGFVEATLAQ-------------------LFKIRDDKGQFRG----------- 131
Query: 188 FAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFSIPEWVT 247
G A E L + + +LF++F IA + N QAN++ A++ AF +P W++
Sbjct: 132 ----GPAYYMEKGLGA--RWMGILFSIFLIIAFGFVFNSVQANTITGAMQGAFGVPTWIS 185
Query: 248 GLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVIINDA 307
G+A+ +LT +++ GG++ I +E+ VPFMA+ Y L A+G+ + ++P +A+++ A
Sbjct: 186 GIAVVILTALIIFGGLRSIARFSELAVPFMAVAYLLLAVGIILFNLSELPGVLAMVVKSA 245
Query: 308 FTGKAVAGGAIGQVIIWGVKRGLFSNEAGLGTATLAHAAAK--TDHPSRQAHVAMLGPFI 365
F A G IG I+ G KRGLFSNEAG+G+A A A+A HP+ Q +V M G FI
Sbjct: 246 FGWHEAAAGGIGAAILNGFKRGLFSNEAGMGSAPNAAASATPYPPHPASQGYVQMAGVFI 305
Query: 366 DTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFAYSTIL 425
DTL+IC+ + I++ G + G L Q A G G +A+ I+ FA+++I+
Sbjct: 306 DTLLICTASAAIILLAGP----QEGEGIMLVQNALTSQVGDWGRYFLAVIILFFAFTSIV 361
Query: 426 AWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLEDVWNFSDM 485
A FY +++L + A L L++ L+ + + GA+ L VWN +D+
Sbjct: 362 ANYFYAENCLVFL------EHNHLAGL-----LIFRLIVLAMVMFGALASLPFVWNLADV 410
Query: 486 MNGLMAIPNLIGLIVLYPIIKQYTEEFIAK 515
GLMAI NLI +++L + + +++ A+
Sbjct: 411 SMGLMAITNLIAILLLSNLAIKLAKDYNAQ 440
>pir||D82279 sodium/alanine symporter VC0784 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9655233|gb|AAF93949.1| (AE004164)
sodium/alanine symporter [Vibrio cholerae]
Length = 516
Score = 257 bits (649), Expect = 3e-67
Identities = 173/514 (33%), Positives = 255/514 (48%), Gaps = 80/514 (15%)
Query: 4 IMDFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGEGDI 63
+ FV++L+G +W P +I L LG GL +++ + +Q R R L K++ +G I
Sbjct: 1 MQSFVDFLNGIIWSPALIYLCLGAGLFYSVLTRFVQVRHFFEMWRLLL--NNKESSKG-I 57
Query: 64 TPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRG 123
+ FQAL ++SG VG GNIAGVA AI FGGPGA+FWMW+ A G AT Y+E L ++
Sbjct: 58 SSFQALAVSLSGRVGTGNIAGVAAAIGFGGPGAVFWMWMVAFFGAATAYAESTLAQIYKE 117
Query: 124 KLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFI 183
+ +G GG ++EK A G + A++
Sbjct: 118 E-DNGEFRGGPAYYIEK---------------------------------AMGQKWYAWV 143
Query: 184 LAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFSIP 243
AI LL +IG A +AFG G M + A+ T FS
Sbjct: 144 FAIATIFACGVLLPGVQSNSIGN---------AVESAFGSGPM-----IETALGT-FSFA 188
Query: 244 EWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVI 303
+ TG +++L ++ GG+KRI +++VPFMA+ Y + A + + G++P IA+I
Sbjct: 189 KIFTGTVISILLGFIIFGGVKRIASFTQIVVPFMALAYIITAFVIILLNIGEVPRIIAMI 248
Query: 304 INDAFTGKAVAGGAIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLGP 363
+ DAF+ A G AIG WGVKRG++SNEAG GT A AAA +HP++Q V
Sbjct: 249 VGDAFSPMAGVGAAIG----WGVKRGVYSNEAGQGTGPHAAAAASVEHPAQQGLVQSFSI 304
Query: 364 FIDTLIICSLTGISIVVTGAYAKYPDLNGAPL---------------TQAAFAEAFGYIG 408
+IDTL++CS T I++TGAY + G L TQ A A IG
Sbjct: 305 YIDTLMVCSATAFMILITGAYNVHGAAEGMFLVQNLPADIIASSPAFTQIAVDSALPGIG 364
Query: 409 EIMVAIGIILFAYSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFI 468
+ VA + FA++TILA+ + NV Y+ + D F V L+ + +
Sbjct: 365 KPFVAFALFFFAFTTILAYYYIAETNVAYIRRTFKVDGLMF---------VLKLVLMASV 415
Query: 469 YVGAVKPLEDVWNFSDMMNGLMAIPNLIGLIVLY 502
+ G VK W D+ GLMA N++G+I+++
Sbjct: 416 FYGTVKTANLAWALGDVGVGLMAWLNIVGIIIIF 449
>emb|CAC01597.1| (AL391041) putative amino acid transport integral membrane protein
[Streptomyces coelicolor A3(2)]
Length = 512
Score = 254 bits (641), Expect = 2e-66
Identities = 164/501 (32%), Positives = 255/501 (50%), Gaps = 60/501 (11%)
Query: 18 PPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGEGDITPFQALMATISGTV 77
P ++ L+ GL+ T +Q R+ ++ + ++ G++ FQAL A +SGTV
Sbjct: 41 PLIVAWLVVAGLVFTGWFGLVQLRKFRLAVDVVRGKYDEEGSTGEVNHFQALTAAVSGTV 100
Query: 78 GIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRGKLPDGTMIGGTFNF 137
G+GNIAGVA A+ GGPGA FWM + L+GMAT++ E LGV +R PDGT+ GG ++
Sbjct: 101 GLGNIAGVAVAVSIGGPGATFWMILCGLLGMATKFVEVTLGVKYREVHPDGTVSGGPMHY 160
Query: 138 LEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFILAILFAALGLALLK 197
L KG E G K+G L L VLA L + F G L +
Sbjct: 161 LPKGLTERFG--------------------KNGKILGKVLAVLASFLILFFGLFGGNLFQ 200
Query: 198 EDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFSIPEWVTGLALAVLTFI 257
+ +A + + G S A A+ G+ +A L I
Sbjct: 201 VNQS-------------YAQLVSVTGGEDGALGSSAGAL---------FFGILIAALVGI 238
Query: 258 VVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVIINDAFTGKAVAGGA 317
V++GGI+ I V LVP MA IY + + V + +P A+ I+ AF + VAGG
Sbjct: 239 VLLGGIRSIANVTSRLVPAMAGIYIVACLIVILVNITAVPDAVTSIVEGAFNPEGVAGGV 298
Query: 318 IGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLGPFIDTLIICSLTGIS 377
+G +II G KR FSNEAGLG+A +AH+A +T HP+ + VA+L PFIDT+++C++T ++
Sbjct: 299 LGALII-GFKRAAFSNEAGLGSAPIAHSAVRTKHPASEGLVALLEPFIDTVVVCTMTALT 357
Query: 378 IVVT-----GAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFAYSTILAWSFYGR 432
IV+ G D+ G +T AF + I+ + ++LFA ST+L W +YG
Sbjct: 358 IVIANPASWGEARAGEDIGGVTITSDAFETVLPWFPYIL-TVAVLLFAVSTVLTWGYYGL 416
Query: 433 QNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLEDVWNFSDMMNGLMAI 492
++ YL F + Y +++ +F G++ L+ + + +D +A+
Sbjct: 417 KSWTYL----------FGRSRAS-EVTYKVVYTVFAVAGSLLTLQTLIDMADAFLFTLAV 465
Query: 493 PNLIGLIVLYPIIKQYTEEFI 513
N+IGL +L P++K+ F+
Sbjct: 466 INIIGLYLLAPVVKRELRTFL 486
>sp|P44555|YAAJ_HAEIN HYPOTHETICAL PROTEIN HI0183 >gi|1074300|pir||I64144 probable amino
acid transport protein HI0183, sodium-dependent -
Haemophilus influenzae (strain Rd KW20)
>gi|1573139|gb|AAC21852.1| (U32703) amino acid carrier
protein, putative [Haemophilus influenzae Rd]
Length = 481
Score = 253 bits (640), Expect = 3e-66
Identities = 175/507 (34%), Positives = 251/507 (48%), Gaps = 83/507 (16%)
Query: 11 LDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGEGDITPFQALM 70
LDG +W I++LLGTGL TI +QFR S+R F GR G +TPFQA
Sbjct: 22 LDGPLWDAT-IIILLGTGLFFTITTGFVQFRLFPASLREMWF-GRSVEGSS-LTPFQAFT 78
Query: 71 ATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRGKLPDGTM 130
++ VG+GNI GVATAI GG GA+FWMW+TA +G
Sbjct: 79 TGLASRVGVGNIGGVATAIALGGEGAVFWMWVTAFIG----------------------- 115
Query: 131 IGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFILAILFAA 190
+ FAE +A +F I KDG GG +
Sbjct: 116 -------MSSAFAE-------STLAQLFKIQ-----DKDG-SFRGG--------PAYYIV 147
Query: 191 LGLALLKEDYLPTIGKILAVLFALFASIAAFGIG-NMTQANSVADAIRTAFSIPEWVTGL 249
GL + +AV FAL A I FG N QANS+ +A A++ G+
Sbjct: 148 QGLK----------SRCMAVAFAL-ALIFTFGFAFNSVQANSIVEATSNAWNWKGEYVGI 196
Query: 250 ALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVIINDAFT 309
+L + T +++ GG+KRI ++ LVP MA+ Y + A+ + IP I I+ AF+
Sbjct: 197 SLVIFTALIIFGGVKRIAIISSNLVPMMALFYLIMAVIILGMHIDMIPSVIHRIVQSAFS 256
Query: 310 GKAVAGGAIGQVI----IWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLGPFI 365
A AGG G ++ + G+KRGLFSNEAG+G+A + AAA HP Q V MLG F+
Sbjct: 257 FDAAAGGMFGALVSKAMMMGIKRGLFSNEAGMGSAPNSAAAAHVKHPVSQGLVQMLGVFV 316
Query: 366 DTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFAYSTIL 425
DT+I+C+ T + I+++ Y L LTQ A G G +A ++LFAYS+I+
Sbjct: 317 DTMIVCTCTAVIILLSNNYGS-ETLKSISLTQNALQYHIGEFGAHFLAFILLLFAYSSII 375
Query: 426 AWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLEDVWNFSDM 485
Y N+ +F P L L++ L+ + F+Y GAV+ VWNF+D
Sbjct: 376 GNYAYAESNI------------RFIKNKPWLVLLFRLMVLFFVYFGAVRSGNVVWNFADT 423
Query: 486 MNGLMAIPNLIGLIVLYPIIKQYTEEF 512
+ +MAI NLI +++L PI+ + +++
Sbjct: 424 VMAVMAIINLIAILMLSPIVWKLMKDY 450
>dbj|BAB05003.1| (AP001511) amino acid carrier protein (sodium/alanine symporter)
[Bacillus halodurans]
Length = 474
Score = 250 bits (631), Expect = 4e-65
Identities = 167/511 (32%), Positives = 252/511 (48%), Gaps = 80/511 (15%)
Query: 4 IMDFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGEG-D 62
+ + ++G +W +I LLG G+ T +QFR L IR LF+ K +G
Sbjct: 2 LQQLTDGVNGFLWTYVVIGGLLGLGVYFTFRTNFVQFRYLKEMIR-VLFDPPKDGQKGKS 60
Query: 63 ITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFR 122
I+ F++ + +G GN+AGVA AI GGPGA+FWMW+ AL+G AT + E L ++
Sbjct: 61 ISSFKSFCIGAATRIGTGNLAGVAVAITVGGPGAVFWMWLVALLGGATSFIESTLAQVYK 120
Query: 123 GKLPDGTMI-GGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLA 181
K + ++ GG ++EK GLG+
Sbjct: 121 IKDKEKSVFRGGPAYYIEK-----------------------------GLGMRW------ 145
Query: 182 FILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFS 241
L I+FA L +A+ F L I N Q+N++A+A AF
Sbjct: 146 --LGIMFAVL----------------IAITFGL--------IFNSVQSNTIAEAFNNAFG 179
Query: 242 IPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIA 301
IP W+ G+ + VLT ++ GG+ RI V+ ++VP MA++Y A V I Q+P AI+
Sbjct: 180 IPTWLMGVIITVLTGAIIFGGVHRIANVSSVIVPVMALLYITIAAIVVIMNISQVPAAIS 239
Query: 302 VIINDAFTGKAVAGGAIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAML 361
+II AF + GG IG I+ GV+RGLFSNEAG+G+A A A A HP++Q + L
Sbjct: 240 LIIQSAFGLEQAIGGGIGAAIMQGVRRGLFSNEAGMGSAPNAAAVADVTHPAKQGFIQTL 299
Query: 362 GPFIDTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFAY 421
G F+DTLI+C+ T I++ + + G L Q + + G I VAI I LFA+
Sbjct: 300 GVFVDTLIVCTATAFIIIMAEGFGTSTEAAGITLLQDSLSSHIGPWASIFVAIAIFLFAF 359
Query: 422 STILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLEDVWN 481
S+I+ +YG N+ ++ K T L Y L + + GA L VW+
Sbjct: 360 SSIIGSYYYGETNIEFIKKSQTG------------VLFYRLATMGLVMFGANASLGLVWD 407
Query: 482 FSDMMNGLMAIPNLIGLIVL----YPIIKQY 508
+D+ LM + NL+G+ +L + ++K Y
Sbjct: 408 LADVFMALMTVINLVGIALLGRVAFKVLKDY 438
>pir||H82085 sodium/alanine symporter VC2356 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9656925|gb|AAF95499.1| (AE004306)
sodium/alanine symporter [Vibrio cholerae]
Length = 476
Score = 250 bits (631), Expect = 4e-65
Identities = 168/513 (32%), Positives = 262/513 (50%), Gaps = 80/513 (15%)
Query: 6 DFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGEGDITP 65
D +N ++ +WG ++ LL+G G+ T+ L IQFR ++ FT+ + +K I+
Sbjct: 3 DLINLMNDLLWGSILVYLLVGVGIYFTLRLGFIQFRH--FTHTFTVLKNSRKADNAGISS 60
Query: 66 FQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRGKL 125
FQAL +++ VG GN+AGVA A+ GGPGA+FWMW+ A++GMAT ++E L ++ +
Sbjct: 61 FQALCTSLAARVGTGNMAGVAVALTAGGPGAIFWMWLIAMLGMATSFAESTLAQLYKTRD 120
Query: 126 PDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFILA 185
DG GG ++EKG ++ G +LF+IFL +A GL A
Sbjct: 121 KDGNYRGGPAYYMEKGLG-MRWMG----------VLFSIFLI-----IAFGLVFNAVQAN 164
Query: 186 ILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFSIPEW 245
+ A+ A E L IG +L F +F I
Sbjct: 165 SITNAMKTAFGFEPMLIGIGIVLLTAFVIFGGI--------------------------- 197
Query: 246 VTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVIIN 305
++I AE++VPFMA Y A+ V + ++P AI++I
Sbjct: 198 ------------------RKIARTAELIVPFMAFAYLAIALFVVVMNYEKVPDAISLIFK 239
Query: 306 DAF-TGKAVAGG---AIGQVIIWGVKRGLFSNEAGLGTATLAHAAAK--TDHPSRQAHVA 359
AF +A AGG AI Q +I GVKRGLFSNEAG+G+A A A+A HP+ Q +V
Sbjct: 240 SAFGLQEAAAGGLGYAIAQAMINGVKRGLFSNEAGMGSAPNAAASATPYPPHPASQGYVQ 299
Query: 360 MLGPFIDTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILF 419
MLG FIDT++IC+ T I+++G Y + +L G LTQ A + G G I +A I F
Sbjct: 300 MLGVFIDTIVICTATVAIILMSGEYVPHGELTGIELTQRALSSQVGDWGGIFIAFAIFFF 359
Query: 420 AYSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLEDV 479
A+++I+A Y N+++L + K +++ L+F+ + G++ L V
Sbjct: 360 AFTSIIANYSYAETNLIFL-----------EHNNKKGLVLFRLVFLGMVMFGSLATLPTV 408
Query: 480 WNFSDMMNGLMAIPNLIGLIVLYPIIKQYTEEF 512
W +D+ GLMAI NL+ +++L I+ + +++
Sbjct: 409 WAMADVSMGLMAIVNLVAILLLSGIVIKLAKDY 441
>pir||G69809 aminoacid carrier protein homolog yflA - Bacillus subtilis
>gi|2443223|dbj|BAA22294.1| (D86417) YflA [Bacillus
subtilis] >gi|2633099|emb|CAB12604.1| (Z99108) similar
to aminoacid carrier protein [Bacillus subtilis]
Length = 471
Score = 249 bits (630), Expect = 5e-65
Identities = 162/522 (31%), Positives = 256/522 (49%), Gaps = 82/522 (15%)
Query: 1 MGAIMDFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFE-GRKKTG 59
M ++ ++ + +WGPP+I+LL GTGL TI+LKG QFR + + T+ G+K G
Sbjct: 1 MERLLVWIEHISDWLWGPPLIILLTGTGLYFTILLKGFQFRYPLYIFKQTIGSVGKKPKG 60
Query: 60 EGDITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGV 119
EG +TP QAL + +S T+G NI GV AI FGGPGA+FWMW+ AL MA ++SE +L V
Sbjct: 61 EGTVTPLQALTSALSSTIGAANIVGVPAAIMFGGPGAVFWMWLIALFAMAIKFSESVLAV 120
Query: 120 AFRGKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRV 179
+R K G +GG ++ KG +K G+ +A I ++ +I + + + ++
Sbjct: 121 HYREKNEQGEYVGGPMYYITKGL-RMKWLGVFFSVALIVELIPSIMVQGNSVSVS---LA 176
Query: 180 LAFILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTA 239
F ++A +G+A L
Sbjct: 177 ETFSFNKIYAGIGIAFL------------------------------------------- 193
Query: 240 FSIPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHA 299
+ L V+ + IG + E +VP MA Y + + + +P
Sbjct: 194 ---------IGLVVIGGVKRIGKV------TEFVVPLMAGAYAGAGLLIVLMNLSSVPAF 238
Query: 300 IAVIINDAFTGKAVAGG----AIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQ 355
+++ ++AFT + GG A+ + + WG RGL+SNEAG+GTA +AHAAA TDHP RQ
Sbjct: 239 FSLVFSNAFTSSSAVGGFAGAALAETVRWGFARGLYSNEAGMGTAPIAHAAAMTDHPVRQ 298
Query: 356 AHVAMLGPFIDTLIICSLTGISIVVTGAY-AKYPDLNGAPLTQAAFAEAFGYIGEIMVAI 414
+++G IDTLIIC+ T ++ +G + K + A LT AAF FG G V++
Sbjct: 299 GFWSVIGIVIDTLIICTTTAFIVLASGVWTGKNASNDPAALTTAAFQHYFGSGGGYFVSV 358
Query: 415 GIILFAYSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVK 474
++ F STI+ FYG + +L + KF +++ I +GA
Sbjct: 359 SLVFFVVSTIMVVIFYGVKQAEFLFGRLAGHVIKF-------------VYLAAIIIGAAG 405
Query: 475 PLEDVWNFSDMMNGLMAIPNLIGLIVLYPIIKQ-YTEEFIAK 515
+ +W D+ + +PN+I L++L +K YTE F ++
Sbjct: 406 GAKAIWGVLDLALVFIVVPNVIALLLLSRKVKALYTEFFTSE 447
>pir||C69972 sodium/proton-dependent alanine carrier pr homolog yrbD - Bacillus
subtilis >gi|2635246|emb|CAB14741.1| (Z99118) similar to
sodium/proton-dependent alanine carrier protein
[Bacillus subtilis] >gi|6977800|emb|CAB75325.1| (Y15896)
hypothetical protein [Bacillus subtilis]
Length = 484
Score = 242 bits (611), Expect = 8e-63
Identities = 173/508 (34%), Positives = 239/508 (46%), Gaps = 86/508 (16%)
Query: 6 DFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGEGDITP 65
DFV L+ +W P+I +LLG G +I+ + +Q R L I +F+G K+ E ++
Sbjct: 3 DFVASLNAVLWSTPVIYILLGIGFAFSIMTRFLQVRHLKEMI-VQMFKG--KSSEAGVSS 59
Query: 66 FQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRGKL 125
FQAL +SG VG GNIAGVATAI FGGPGA+FWMW A
Sbjct: 60 FQALSIALSGRVGTGNIAGVATAIAFGGPGAVFWMWAIAF-------------------- 99
Query: 126 PDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFILA 185
IG F+E A+ I+ K GG R
Sbjct: 100 -----IGAASAFVESTLAQ-------------------IYKVKQDGQYRGGPRY------ 129
Query: 186 ILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFSIPEW 245
+ GL + K AVLFA A IA + Q+NS+A I+ AF I +
Sbjct: 130 --YIEKGLGI----------KWFAVLFAAAALIAMAFLMPGVQSNSIAAGIQNAFGISPF 177
Query: 246 VTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVIIN 305
VTG L +L ++ GG+KRI A+M+VPFMAI Y L ++ + + ++P I++I
Sbjct: 178 VTGCGLVLLLGFIIFGGVKRIANAAQMIVPFMAIGYILLSLIIIVMNVSELPAVISLIFK 237
Query: 306 DAFTGKAVAGGAIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLGPFI 365
AF + GG IG I WGVKRG++SNEAG GT AAA+ HP +Q V +I
Sbjct: 238 SAFALDSAFGGLIGMAISWGVKRGIYSNEAGQGTGPHPAAAAEVSHPVKQGLVQAFSVYI 297
Query: 366 DTLIICSLTGISIVVTGAY-AKYPDLN-----------GAPLTQAAFAEAFGYIGEIMVA 413
DTL +CS T I+ TG Y + D + G TQAA G VA
Sbjct: 298 DTLFVCSATAFMILFTGMYNTQAADGSFIVHQLKGVEAGPGFTQAAIDSVLPGFGAGFVA 357
Query: 414 IGIILFAYSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAV 473
I + FA++TI+A+ + N+ YLA+ K+A L K L+ + + G V
Sbjct: 358 IALFFFAFTTIMAYYYIAETNIAYLAR---GRESKWAMLGLK------LIILAATFYGTV 408
Query: 474 KPLEDVWNFSDMMNGLMAIPNLIGLIVL 501
K W D G+M N+I +++L
Sbjct: 409 KTASLAWALGDAGLGIMVWLNVIAIVLL 436
>dbj|BAB05491.1| (AP001513) amino acid carrier protein (sodium/alanine symporter)
[Bacillus halodurans]
Length = 481
Score = 239 bits (604), Expect = 5e-62
Identities = 167/505 (33%), Positives = 237/505 (46%), Gaps = 87/505 (17%)
Query: 15 VWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTL-------FEGRKKTGEGDITPFQ 67
+W +I LLLG GL T V + +QFR LG R + F+ RK T FQ
Sbjct: 22 IWTYVLIALLLGLGLYFTFVSRFVQFRLLGEMGRLLVEGMNRKAFKERKGTSS-----FQ 76
Query: 68 ALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRGKLPD 127
A + + VG GN+AGVA AI GGPGA+FWMWI AL+G AT
Sbjct: 77 AFAISTAARVGTGNLAGVAVAISLGGPGAIFWMWIIALIGAAT----------------- 119
Query: 128 GTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFILAIL 187
GF E + L I+ KD G GG
Sbjct: 120 -------------GFIE--------------STLAQIYKVKDKDGFRGGP---------- 142
Query: 188 FAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFSIPEWVT 247
A E L + +LFA+ ++ I N Q +++ADA A+ + +
Sbjct: 143 ------AYYMEKALNA--RWAGILFAILITLCFGLIFNAVQTHTIADAFVGAYDLNPFFI 194
Query: 248 GLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVIINDA 307
GL +A + +V GGI+RI +AE++VP AI Y L A+ + + Q+P I +I+ +A
Sbjct: 195 GLIIAFVMAFIVFGGIRRIAVIAEVIVPTFAIAYVLIALVIVLLNITQVPSVIGLIVGNA 254
Query: 308 FTGKAVAGGAIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLGPFIDT 367
F + V GG G I+ G++RGLFSNEAG+G+A A A A HP +Q V L DT
Sbjct: 255 FGIQEVVGGGFGAAIMHGIRRGLFSNEAGMGSAPNAAATAHVSHPVKQGLVQSLSVLTDT 314
Query: 368 LIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFAYSTILAW 427
LIICS T I++T Y ++ G LTQ A G V I I FA+S++L
Sbjct: 315 LIICSATAFLILLTDVYT-VGEMGGIQLTQEALTVHIGEWSMTFVTIAISFFAFSSLLGN 373
Query: 428 SFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLEDVWNFSDMMN 487
+YG N+ ++++ L V+ L F+ I +GA L+ +W +D++
Sbjct: 374 YYYGEANIQFISQ------------NRALLTVFRLAFLAMILIGATSELQIIWEMADLIM 421
Query: 488 GLMAIPNLIGLIVLYPIIKQYTEEF 512
G MAI NLI + +L I Q ++
Sbjct: 422 GAMAIVNLIAIALLAKIAVQALTDY 446
>sp|Q45068|ALST_BACSU AMINO ACID CARRIER PROTEIN ALST >gi|7443815|pir||A69585 amino acid
carrier protein alsT - Bacillus subtilis
>gi|1405464|emb|CAA97609.1| (Z73234) AlsT [Bacillus
subtilis] >gi|2634195|emb|CAB13695.1| (Z99113) amino
acid carrier protein [Bacillus subtilis]
Length = 465
Score = 230 bits (581), Expect = 3e-59
Identities = 151/499 (30%), Positives = 238/499 (47%), Gaps = 90/499 (18%)
Query: 20 MIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGEGDITPFQALMATISGTVGI 79
+ +L+G GL TI IQFR + I G K G ++ QA + + VG
Sbjct: 20 LFYILIGLGLFFTIRFGFIQFR---YFIEMFRIVGEKPEGNKGVSSMQAFFISAASRVGT 76
Query: 80 GNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRGKLPDGTMIGGTFNFLE 139
GN+ GVA AI GGPGA+FWMW+ A VGMA+ +F+E
Sbjct: 77 GNLTGVALAIATGGPGAVFWMWVVAAVGMAS-------------------------SFVE 111
Query: 140 KGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFILAILFAALGLALLKED 199
A+ ++ +DG GG + GL
Sbjct: 112 STLAQ-------------------LYKVRDGEDFRGG--------PAYYIQKGLG----- 139
Query: 200 YLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFSIPEWVTGLALAVLTFIVV 259
+ L ++FA+ +++ I N Q N++A A+ AF + + V + LAVLT ++
Sbjct: 140 -----ARWLGIVFAILITVSFGLIFNAVQTNTIAGALDGAFHVNKIVVAIVLAVLTAFII 194
Query: 260 IGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVIINDAFTGKAVAGGAIG 319
GG+KR+ V++++VP MA IY L A+ V I P IA I+ +A + V GG IG
Sbjct: 195 FGGLKRVVAVSQLIVPVMAGIYILIALFVVITNITAFPGVIATIVKNALGFEQVVGGGIG 254
Query: 320 QVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLGPFIDTLIICSLTGISIV 379
+I+ G +RGLFSNEAG+G+A A A A HP++Q + LG F DT IIC+ T I+
Sbjct: 255 GIIVIGAQRGLFSNEAGMGSAPNAAATAHVSHPAKQGFIQTLGVFFDTFIICTSTAFIIL 314
Query: 380 VTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFAYSTILAWSFYGRQNVMYL- 438
+ Y+ P +G +TQAA G +A+ + LFA+S+++ +YG N+ ++
Sbjct: 315 L---YSVTPKGDGIQVTQAALNHHIGGWAPTFIAVAMFLFAFSSVVGNYYYGETNIEFIK 371
Query: 439 --AKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLEDVWNFSDMMNGLMAIPNLI 496
W+ +Y + + + G++ + VW+ +D+ G+MA+ NLI
Sbjct: 372 TSKTWLN---------------IYRIAVIAMVVYGSLSGFQIVWDMADLFMGIMALINLI 416
Query: 497 GLIVL----YPIIKQYTEE 511
+ +L Y + K Y ++
Sbjct: 417 VIALLSNVAYKVYKDYAKQ 435
>dbj|BAB06433.1| (AP001516) amino acid carrier protein (sodium/alanine symporter)
[Bacillus halodurans]
Length = 470
Score = 229 bits (578), Expect = 6e-59
Identities = 157/504 (31%), Positives = 238/504 (47%), Gaps = 86/504 (17%)
Query: 15 VWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGEGDITPFQALMATIS 74
+W +I LL+G G+ TI K Q + R G+ ++ F A + +
Sbjct: 13 LWSYLLIALLVGLGVFFTIRTKFAQITNIKEMFRLMKESPSTSDGKKRVSSFGAFCISAA 72
Query: 75 GTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRGKLPDGTMIGGT 134
+G GN+AGVA AI GGPGA+FWMW+ A+ G
Sbjct: 73 SRIGTGNLAGVAIAITLGGPGAIFWMWVVAI-------------------------FGSV 107
Query: 135 FNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFILAILFAALGLA 194
+F+E A+V + KD G GG + ALG
Sbjct: 108 LSFIESTLAQV-------------------YKVKDKNGFKGGPAYY------MEKALGQ- 141
Query: 195 LLKEDYLPTIGKILAVLFALFASIAAFGIG-NMTQANSVADAIRTAFSIPEWVTGLALAV 253
+ L + FA+ + FG+ N QAN+++ A AF V G+ LAV
Sbjct: 142 -----------RWLGITFAILITFC-FGLTFNSVQANTISAAFEEAFGFNSAVIGVVLAV 189
Query: 254 LTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVIINDAFTGKAV 313
+ V+ GG+KRI +V++++VP MA Y L A V I G++P +I++ AF +
Sbjct: 190 VVGFVIFGGVKRIAKVSQVVVPVMAGFYLLLAAYVVIFNIGEVPAVFQLIVSSAFGLEQA 249
Query: 314 AGGAIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLGPFIDTLIICSL 373
GG IG I+ GVKRGLFSNEAG+G+A +A A A HP++Q + LG F+DTL+ICS
Sbjct: 250 IGGGIGAAIMNGVKRGLFSNEAGMGSAPVAAATADVSHPAKQGFIQTLGVFVDTLLICSA 309
Query: 374 TGISIVVTGAYAKYPD--LNGAPLTQAAFAEAFGYIGEIMVAIGIILFAYSTILAWSFYG 431
T I++ G PD L+G +TQAA + G VA I+LF +S+I+ +YG
Sbjct: 310 TAFIILLAGT----PDEGLSGIQITQAALSSHVGSWATYFVAFAILLFCFSSIIGNYYYG 365
Query: 432 RQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLEDVWNFSDMMNGLMA 491
N+ Y+ + + ++ L + + G+V+ L VW+ +D+ LMA
Sbjct: 366 ESNLEYIKE------------NKSVIFLFRLAVLGMVIYGSVESLATVWDLADLFMALMA 413
Query: 492 IPNLIGLI----VLYPIIKQYTEE 511
+ NL+ L V ++K Y ++
Sbjct: 414 LVNLVALALIGKVALAVLKDYLKQ 437
>pir||C69751 sodium/proton-dependent alanine transporter homolog ybgH
[similarity] - Bacillus subtilis
>gi|2632528|emb|CAB12036.1| (Z99105) similar to
sodium/proton-dependent alanine transporter [Bacillus
subtilis] >gi|3599665|dbj|BAA33140.1| (AB006424) ybgH
[Bacillus subtilis]
Length = 463
Score = 222 bits (559), Expect = 1e-56
Identities = 158/488 (32%), Positives = 232/488 (47%), Gaps = 82/488 (16%)
Query: 29 LLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGEGDITPFQALMATISGTVGIGNIAGVATA 88
L L LK +Q R L +R L EG + I+PFQA +++ VG GNI G+A A
Sbjct: 15 LFLRFRLKFLQVRMLKEMVR-VLREGAASRSKNSISPFQAFCISMAARVGTGNITGIAIA 73
Query: 89 IHFGGPGALFWMWITALVGMATRYSEGLLGVAFRGKLPDGTMIGGTFNFLEKGFAEVKGT 148
I GGPGA+FWMWI A++G A+ +F+E A+
Sbjct: 74 IALGGPGAIFWMWIIAIIGSAS-------------------------SFVESTLAQ---- 104
Query: 149 GISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFILAILFAALGLALLKEDYLPTIGKIL 208
I+ KD G GG + GL +G +
Sbjct: 105 ---------------IYKVKDVNGFRGG--------PAYYMEKGLNKR------WMGALF 135
Query: 209 AVLFALFASIAAFGIG-NMTQANSVADAIRTAFSIPEWVTGLALAVLTFIVVIGGIKRIG 267
AVL L +FGI N Q+N+V+ A AF GL L + ++ GG+KRI
Sbjct: 136 AVLITL-----SFGIVFNSVQSNTVSLAFENAFGTNRLTLGLILIAVFGTIIFGGVKRIA 190
Query: 268 EVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVIINDAFTGKAVAGGAIGQVIIWGVK 327
++AE +V +A++Y A V Q+P +A+I+ +AF AGGA+G ++ GV+
Sbjct: 191 KLAESIVVVLAVLYIGVAFFVIFSNITQLPGVLALIVKNAFGFDQAAGGALGAALMQGVR 250
Query: 328 RGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLGPFIDTLIICSLTGISIVVTGAYAKY 387
RG+FSNEAG+G+A A A A T HP +Q + G DTL+IC+ T I+ + AY
Sbjct: 251 RGIFSNEAGMGSAPNAAATATTSHPVKQGLIQAFGVLTDTLVICTSTAFIILFSDAY-HT 309
Query: 388 PDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFAYSTILAWSFYGRQNVMYLAKWITQDPQ 447
P L+G LTQA+ + G +AI I+LF + ++ +YG N+ +L
Sbjct: 310 PGLSGIALTQASLSSHVGSWASGFLAILILLFGFCALIGNYYYGETNIGFL--------- 360
Query: 448 KFANLYPKLHLVYNLLFVIFIYVGAVKPLEDVWNFSDMMNGLMAIPNLIGLI----VLYP 503
N KL VY + + I G V ++ VW+ +D+ GLM I NLI + V++
Sbjct: 361 ---NKSKKLIFVYRIGVLAMIVFGCVAKVQLVWDLADLFMGLMVIVNLIAIFLLSKVVFT 417
Query: 504 IIKQYTEE 511
+K YT +
Sbjct: 418 ALKDYTRQ 425
>dbj|BAA74514.1| (AB022867) D-alanine glycine permease [Prevotella ruminicola]
Length = 346
Score = 221 bits (557), Expect = 2e-56
Identities = 143/397 (36%), Positives = 210/397 (52%), Gaps = 70/397 (17%)
Query: 1 MGAIMDFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGE 60
M I DF + + +WG PMIVLLLGT L LT L+ I R+L I+ ++ + K E
Sbjct: 1 MEPINDFFSLMSSFLWGWPMIVLLLGTHLFLTFRLR-IPQRKLFTGIKLSVKKDSK--AE 57
Query: 61 GDITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVA 120
GD++ F AL ++ T+G GNI GVATA+ GGPGA+ W W+T G+ G++
Sbjct: 58 GDVSQFGALATALAATIGTGNIVGVATAVALGGPGAVLWCWLT-----------GIFGMS 106
Query: 121 FRGKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVL 180
+ +AE + + + + A DG L G + L
Sbjct: 107 TK-------------------YAE-----------GLLAVKYRVKTA-DGRMLGGPMYAL 135
Query: 181 AFILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAF 240
LG+ K L +LFA+F ++A+FGIG QANS+A F
Sbjct: 136 E-------RGLGM------------KWLGILFAIFTALASFGIGCTVQANSIALLAHETF 176
Query: 241 SIPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAI 300
+P W+ GL + +LT +V++GG+K I +V +LVPFMA++Y L I + + AI
Sbjct: 177 GVPAWIIGLTVCLLTALVILGGVKAIAKVCTVLVPFMALLYVLGCIAILCINNSYVWPAI 236
Query: 301 AVIINDAFTGKAVAGGAIGQVII----WGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQA 356
+IIN AF A GG +G ++ +G+ RGLFSNE+GLG+A + AAA+T +P RQA
Sbjct: 237 QLIINSAFNPSAAGGGFVGATVMMAARYGIARGLFSNESGLGSAPIVAAAAQTRNPVRQA 296
Query: 357 HVAMLGPFIDTLIICSLTGISIVVTGAYAKYPDLNGA 393
V+ F DT++IC+LTG +V+ + YPD+ A
Sbjct: 297 LVSSTATFWDTVVICALTG--LVLVSSILAYPDITYA 331
>sp|P30144|DAGA_ALTHA NA(+)-LINKED D-ALANINE GLYCINE PERMEASE >gi|94661|pir||S25276
D-alanine/glycine transport protein, sodium-dependent -
Alteromonas haloplanktis >gi|141992|gb|AAA21984.1|
(M59081) D-alanine permease [Pseudoalteromonas
haloplanktis]
Length = 542
Score = 219 bits (552), Expect = 6e-56
Identities = 142/378 (37%), Positives = 189/378 (49%), Gaps = 68/378 (17%)
Query: 11 LDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGEGDITPFQALM 70
L G VW P +LLG GL TI LK Q R + + + KK EGD T FQAL
Sbjct: 2 LGGAVWFP---YVLLGVGLFFTIYLKFPQIRYFKHACQVVSGKFDKKDTEGDTTHFQALA 58
Query: 71 ATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRGKLPDGTM 130
+SGTVG GNI GVA AI GGP ALFWMW+TA GM T++ E L +R K DGTM
Sbjct: 59 TALSGTVGTGNIGGVALAISIGGPAALFWMWMTAFFGMTTKFVEVTLSHKYREKTEDGTM 118
Query: 131 IGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFILAILFAA 190
GG +++K R+ LAILFA
Sbjct: 119 SGGPMYYMDK-------------------------------------RLNMKWLAILFA- 140
Query: 191 LGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFSIPEWVTGLA 250
+A + + F + + I N+ Q + F TG
Sbjct: 141 -----------------VATVISSFGTGSLPQINNIAQ------GMEATFGFAPMATGAV 177
Query: 251 LAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVIINDAFTG 310
L++L +V++GGIKRI + +VP MA IY + A+ V A I + + + DAF+G
Sbjct: 178 LSILLALVILGGIKRIAAITSRVVPLMAAIYIIGALAVIFYNAENIGPSFSAVFMDAFSG 237
Query: 311 KAVAGGAIGQVIIW----GVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLGPFID 366
A AGG +G + GV RGLFSNEAG G+A +AHA+AK D P + V++L PFID
Sbjct: 238 SAAAGGFLGASFAYAFNRGVNRGLFSNEAGQGSAPIAHASAKADEPVSEGIVSILEPFID 297
Query: 367 TLIICSLTGISIVVTGAY 384
T+IIC+LTG+ I+ +G +
Sbjct: 298 TIIICTLTGLVILSSGVW 315
>pir||G81363 probable amino-acid transport protein Cj0903c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968341|emb|CAB73161.1| (AL139076) putative
amino-acid transport protein [Campylobacter jejuni]
Length = 488
Score = 215 bits (543), Expect = 7e-55
Identities = 149/498 (29%), Positives = 242/498 (47%), Gaps = 69/498 (13%)
Query: 20 MIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGEGDITPFQALMATISGTVGI 79
M+VLL+ GL + + + +QFR L S+ L E + + I+PFQALM + + VGI
Sbjct: 29 MVVLLIVCGLYYSFLTRFVQFRMLS-SVFKILTEKNEGHAKEHISPFQALMISTASRVGI 87
Query: 80 GNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRGKLPDGTMIGGTFNFLE 139
GNIAG++ A+ GG GALFWMW+ A G A+ ++E L ++ K G GG +++
Sbjct: 88 GNIAGISLALATGGAGALFWMWVMAFFGGASAFAESTLAQVYKSKDDTGGFKGGPAYYIK 147
Query: 140 KGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFILAILFAALGLALLKED 199
K S + F AFIL I +A G L+
Sbjct: 148 KALG-------SHFFGAFF----------------------AFILIITYA-YGFNGLQSQ 177
Query: 200 YLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFSIPEW--VTGLALAVLTFI 257
+ + K+ +F N+ D F+ W + G+ L +
Sbjct: 178 TMTSSFKVYYDMF---------------NPNAAVD-----FASSSWPMIIGIVLTIFGAW 217
Query: 258 VVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVIINDAFTGKAVAGGA 317
+ +IG+++ ++VPFMA+ Y L A+ + +IP I +I+ AF KA+ GG
Sbjct: 218 MFFSHHTKIGKISSLIVPFMALAYVLLAVIAVLMNFDKIPSVIHMILQSAFDFKAIFGGF 277
Query: 318 IGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLGPFIDTLIICSLTGIS 377
G ++ G+KRGLFSNEAG+G+A A AAA T HP++Q + ID +++C+ +G
Sbjct: 278 AGSALVIGIKRGLFSNEAGMGSAPNAAAAALTSHPAKQGVIQAFSVLID-VVVCTSSGFL 336
Query: 378 IVVTGAYAKYPDL---NGAPLTQAAFAEAFGYIGEIMVAIGIILFAYSTILAWSFYGRQN 434
++ + AY + G PL Q A E +G G + I I+LFA ++++ +Y + N
Sbjct: 337 VLFSMAYLGLGENKIDGGMPLVQEAMREYYGSFGIHFITIAIVLFAITSLIGNYYYAQAN 396
Query: 435 VMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLEDVWNFSDMMNGLMAIPN 494
V YL KF + ++ + V I++G+ L+ WN +D+ MA N
Sbjct: 397 VKYLTN------SKF------VMNLFRITAVAMIFIGSQMNLKLAWNLADLTMAFMATTN 444
Query: 495 LIGLIVLYPIIKQYTEEF 512
+I L++L I+ + ++F
Sbjct: 445 IISLLLLGGIVNKVLKDF 462
>pir||F83363 probable AGCS sodium/alanine/glycine symporter PA2252 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9948279|gb|AAG05640.1|AE004651_2 (AE004651) probable
AGCS sodium/alanine/glycine symporter [Pseudomonas
aeruginosa]
Length = 481
Score = 213 bits (537), Expect = 4e-54
Identities = 151/489 (30%), Positives = 233/489 (46%), Gaps = 77/489 (15%)
Query: 17 GPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTGEGDITPFQALMATISGT 76
G +IVL++G G TI + +QFR G F +F + G ++ FQALM +++G
Sbjct: 11 GKVLIVLIVGLGAYFTIRSRFVQFRHFGHM--FGVFRESLRGQAGQLSSFQALMLSLAGR 68
Query: 77 VGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRGKLPDGTMIGGTFN 136
VG GNIAGV A+ GGPGA+FWMW+TALV G + +
Sbjct: 69 VGAGNIAGVGIAVTLGGPGAVFWMWVTALV-------------------------GMSSS 103
Query: 137 FLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFILAILFAALGLALL 196
F E A+V + DG GL G + GL L
Sbjct: 104 FFECTLAQV-------------------YKRSDGDGLYRGG-------PSYYIQHGLKL- 136
Query: 197 KEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFSIPEWVTGLALAVLTF 256
+ +AV+FA+ + N Q+ +V +++ AF TG+ALAVL
Sbjct: 137 ---------RSMAVVFAVLLLVTYGFAFNGLQSYTVTHSLQNAFGFAPQHTGIALAVLLG 187
Query: 257 IVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVIINDAFTGKAVAGG 316
+V IGGIKRI V+++LVP + Y + V +P + I+ AF GG
Sbjct: 188 VVFIGGIKRIAAVSDLLVPIKTLAYIGVTLYVIASQIEHVPAMLETIVKSAFGLDPAFGG 247
Query: 317 AIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLGPFIDTLIICSLTGI 376
+G I+ GVKRG+F+NEAGLG+A A A HP+ Q V F+DT +IC+ T +
Sbjct: 248 LLGSAIVMGVKRGVFANEAGLGSAPNVAAVAAVRHPAAQGVVQAFSVFLDTFVICTCTAL 307
Query: 377 SIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFAYSTILAWSFYGRQNVM 436
I+++G Y + +G LTQ + A G G + V++ + LF ++ IL + G ++
Sbjct: 308 LILLSGFYTPGFEGDGIVLTQNSLAAVVGDWGRVFVSVALSLFVFTCILYNFYLGENSLQ 367
Query: 437 YLAKWITQDPQKFANLYPKLHLV-YNLLFVIFIYVGAVKPLEDVWNFSDMMNGLMAIPNL 495
+L++ +L L+ Y L + + G+V+ L V+ F+D+ +A NL
Sbjct: 368 FLSR-------------NRLVLIGYRALVLALVVWGSVQDLSTVFAFADITMTCLAFVNL 414
Query: 496 IGLIVLYPI 504
+ L +L+ +
Sbjct: 415 MALALLFKV 423
>pir||G81227 probable amino-acid transport protein NMA0073 [imported] -
Neisseria meningitidis (group B strain MD58, group A
strain Z2491) >gi|7225414|gb|AAF40651.1| (AE002376)
amino acid symporter, putative [Neisseria meningitidis
MC58] >gi|7378846|emb|CAB83389.1| (AL162752) putative
amino-acid transport protein [Neisseria meningitidis
Z2491]
Length = 475
Score = 210 bits (528), Expect = 4e-53
Identities = 164/524 (31%), Positives = 249/524 (47%), Gaps = 92/524 (17%)
Query: 6 DFVNWLDGEVWG--PPM----IVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTG 59
+F WL G V PM + +LLGTGL T+ +QFR G SI+ L G +K G
Sbjct: 4 NFTEWLHGWVGAINDPMWSYLVYMLLGTGLFFTVTTGFVQFRLFGRSIKEML--GGRKQG 61
Query: 60 EGD--ITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLL 117
+ ITPFQA + G+A+ + G + G+A G
Sbjct: 62 DDPHGITPFQAF------------VTGLASRVGVGN-----------IAGVAIAIKVGGP 98
Query: 118 GVAFRGKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGL 177
G F + +IG + F+E A+ LF + D GG
Sbjct: 99 GAVFWMWVT--ALIGMSSAFVESSLAQ----------------LFKV-RDYDNHHFRGG- 138
Query: 178 RVLAFILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFG-IGNMTQANSVADAI 236
+ GL K L VLFAL + I FG + Q N++AD +
Sbjct: 139 -------PAYYITQGLGQ----------KWLGVLFAL-SLIFCFGFVFEAVQTNTIADTV 180
Query: 237 RTAFSIPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQI 296
+ A+ G+AL +LT ++ GGI+RI + AE++VP MA++Y A+ + + I
Sbjct: 181 KAAWGWEPHYVGVALVILTAPIIFGGIRRISKAAEIVVPLMAVLYLFIALFIILTNIPMI 240
Query: 297 PHAIAVIINDAFTGKAVAGGAIG----QVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHP 352
P I + AF A AGG +G Q ++ G+KRGL+SNEAG+G+A A AAA+ HP
Sbjct: 241 PDVFGQIFSGAFKFDAAAGGLLGGLISQTMMMGIKRGLYSNEAGMGSAPNAAAAAEVKHP 300
Query: 353 SRQAHVAMLGPFIDTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMV 412
Q + MLG F+DT+I+CS T I++ Y DL+GA LTQAA G G +
Sbjct: 301 VSQGMIQMLGVFVDTIIVCSCTAFIILI--YQQPYGDLSGAALTQAAIVSQVGQWGAGFL 358
Query: 413 AIGIILFAYSTILAWSFYGRQNVMYL-AKWITQDPQKFANLYPKLHLVYNLLFVIFIYVG 471
A+ + +FA+ST++ Y NV ++ + W+ + V+ +L + ++Y G
Sbjct: 359 AVILFMFAFSTVIGNYAYAESNVQFIKSHWL-------------ITAVFRMLVLAWVYFG 405
Query: 472 AVKPLEDVWNFSDMMNGLMAIPNLIGLIVLYPIIKQYTEEFIAK 515
AV + VW+ +DM G+MA NL+ +++L P+ ++ AK
Sbjct: 406 AVANVPLVWDMADMAMGIMAWINLVAILLLSPLAFMLLRDYTAK 449
>sp|P30143|YAAJ_ECOLI HYPOTHETICAL 51.7 KD PROTEIN IN THRC-TALB INTERGENIC REGION (ORF8)
>gi|7443813|pir||G64720 probable amino acid transport
protein yaaJ, sodium-dependent - Escherichia coli
>gi|1786188|gb|AAC73118.1| (AE000111) inner membrane
transport protein [Escherichia coli K12]
Length = 476
Score = 207 bits (522), Expect = 2e-52
Identities = 151/517 (29%), Positives = 241/517 (46%), Gaps = 86/517 (16%)
Query: 6 DFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFR---RLGWSIRFTLFEGRKKTGEGD 62
DF ++++ +WG MI LL G G T +QFR + G S++ ++ G
Sbjct: 3 DFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQ-----PGG 57
Query: 63 ITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFR 122
+T FQ+L +++ VG GN+AGVA AI GGPGA+FWMW+ A +GMAT ++E L ++
Sbjct: 58 LTSFQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYK 117
Query: 123 GKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAF 182
+ +G GG ++ +G ++ G +LFA+FL + G++ A
Sbjct: 118 ERDVNGQFRGGPAWYMARGLG-MRWMG----------VLFAVFLLIAYGIIFSGVQANAV 166
Query: 183 ILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFSI 242
A+ F+ D+ P + I+ +F L A
Sbjct: 167 ARALSFSF--------DFPPLVTGIILAVFTLLA-------------------------- 192
Query: 243 PEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAV 302
+ G+ + + + VP MAII+ L ++ + + GQ+PH I
Sbjct: 193 ----------------ITRGLHGVARLMQGFVPLMAIIWVLTSLVICVMNIGQLPHVIWS 236
Query: 303 IINDAFTGKAVAGGAIG----QVIIWGVKRGLFSNEAGLGTATLAHAAAKT--DHPSRQA 356
I AF + AGGA G Q I G +R +FSNEAG+G+ A AAA + HP+ Q
Sbjct: 237 IFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPNAAAAAASWPPHPAAQG 296
Query: 357 HVAMLGPFIDTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGI 416
V M+G FIDTL+IC+ + + I++ G Y L G L Q A G G V + +
Sbjct: 297 IVQMIGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAEFVTLVV 356
Query: 417 ILFAYSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPL 476
ILFA+S+I+A Y N+ +L + N PK + + G + L
Sbjct: 357 ILFAFSSIVANYIYAENNLFFL---------RLNN--PKAIWCLRICTFATVIGGTLLSL 405
Query: 477 EDVWNFSDMMNGLMAIPNLIGLIVLYPIIKQYTEEFI 513
+W +D++ MAI NL +++L P++ +++
Sbjct: 406 PLMWQLADIIMACMAITNLTAILLLSPVVHTIASDYL 442
>sp|P30145|ALCP_BACP3 SODIUM/PROTON-DEPENDENT ALANINE CARRIER PROTEIN
>gi|321650|pir||A45111 D-alanine/glycine transport
protein, sodium-dependent - thermophilic bacterium PS-3
>gi|217144|dbj|BAA02075.1| (D12512) alanine carrier
protein [thermophilic bacterium PS3]
Length = 445
Score = 203 bits (512), Expect = 3e-51
Identities = 135/472 (28%), Positives = 211/472 (44%), Gaps = 89/472 (18%)
Query: 57 KTGEGDITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGL 116
K+ E ++ FQAL ++SG +G+GN+AG AT I +GGPGA+FWMW+ +G AT Y E
Sbjct: 9 KSSEAGVSSFQALTMSLSGRIGVGNVAGTATGIAYGGPGAVFWMWVITFIGAATAYVEST 68
Query: 117 LGVAFRGKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGG 176
+ D T+ V+ + + + +A G GL
Sbjct: 69 WRKFIKRNKTDNTV-------------AVRRSTLKKALA--------------GNGLRCS 101
Query: 177 LRVLAFILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAI 236
+ +A+L GI + A+S ++A
Sbjct: 102 RAAIILSMAVLMP--------------------------------GIQANSIADSFSNA- 128
Query: 237 RTAFSIPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQI 296
F IP+ VTG+ + + + GG+KRI + AE++VPFMA+ Y AI + ++
Sbjct: 129 ---FGIPKLVTGIFVIAVLGFTIFGGVKRIAKTAEIVVPFMAVGYLFVAIAIIAANIEKV 185
Query: 297 PHAIAVIINDAFTGKAVAGGAIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQA 356
P +I AF V GG +G ++WGVKRGL++NEAG GT AAA+ HP++Q
Sbjct: 186 PDVFGLIFKSAFGADQVFGGILGSAVMWGVKRGLYANEAGQGTGAHPAAAAEVSHPAKQG 245
Query: 357 HVAMLGPFIDTLIICSLTGISIVVTGAYAKYPDLN-------------GAPLTQAAFAEA 403
V ++D ++ + T + I+ TG Y + GA TQAA
Sbjct: 246 LVQAFSIYLDVFLVVTATALMILFTGQYNVINEKTGETIVEHLKGVEPGAGYTQAAVDTL 305
Query: 404 FGYIGEIMVAIGIILFAYSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLL 463
F G +AI + FA++T+ A+ + N+ YL + + FA L+
Sbjct: 306 FPGFGSAFIAIALFFFAFTTMYAYYYIAETNLAYLVRSEKRGTAFFA---------LKLV 356
Query: 464 FVIFIYVGAVKPLEDVWNFSDMMNGLMAIPNLIGLIVL----YPIIKQYTEE 511
F+ + G VK W D+ G+M NLI +++L Y +K Y E+
Sbjct: 357 FLAATFYGTVKTATTAWAMGDIGLGIMVWLNLIAILLLFKPAYMALKDYEEQ 408
>pir||G71255 probable sodium/proton-dependent alanine transporter - syphilis
spirochete >gi|3323324|gb|AAC26586.1| (AE001267)
sodium/proton-dependent alanine transporter [Treponema
pallidum]
Length = 500
Score = 185 bits (465), Expect = 1e-45
Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 83/468 (17%)
Query: 56 KKTGEGDITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEG 115
+K G+G ++ FQALM + + VG GNI GVATAI FGG GA+FWMW++A G A+
Sbjct: 90 EKRGKG-VSSFQALMISTASRVGAGNIVGVATAIAFGGKGAVFWMWVSAFFGAASA---- 144
Query: 116 LLGVAFRGKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAG 175
F+E A+ T + G G
Sbjct: 145 ---------------------FVESTLAQAYKT-------------------RTACGFRG 164
Query: 176 GLRVLAFILAILFAALGLALLKEDYLPTIGKILAVLFALFASIA-AFGIGNMTQANSVAD 234
G + +GL + + VLFAL A A+G + N V+
Sbjct: 165 G--------PAYYIEMGLK----------SRSMGVLFALCLVFAYAYGFNALQAYNIVST 206
Query: 235 AIRTAFSIPEWVTGLA--LAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKF 292
WV LA L+ L V+ GG+ RI V+ ++VP MA+ Y + V
Sbjct: 207 LSYYGKDSSLWVQILAVLLSFLLAFVIFGGVARISVVSSVIVPVMAVGYVFLGLWVLALN 266
Query: 293 AGQIPHAIAVIINDAFTGKAVAGGAIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHP 352
++P I + + A AGG G V++ G+KRGL S+EAG+G+A A A+A+ HP
Sbjct: 267 VYRLPALFFEICREGLSLTAFAGGTFGSVVVIGIKRGLLSHEAGMGSAPNAAASAEVSHP 326
Query: 353 SRQAHVAMLGPFIDTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMV 412
Q V L FIDT++ICS+T ++++ A D++G Q A ++ G +G +V
Sbjct: 327 VVQGLVQALSVFIDTMLICSVTAFVLLLSDV-AGSVDVSGMQFVQQALSKQVGPVGVHLV 385
Query: 413 AIGIILFAYSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGA 472
+ I LFA+S+++ +Y NV +F + + V+ + V ++VGA
Sbjct: 386 TLAIFLFAFSSLMGNYYYAESNV------------RFIKDHKMVLSVFRVTCVSAVFVGA 433
Query: 473 VKPLEDVWNFSDMMNGLMAIPNLIGLIVLYPI----IKQYTEEFIAKN 516
VW +D+ M + NLI ++ L+P+ ++ Y +++ A N
Sbjct: 434 HASFHFVWGVADLFMVFMTVINLIAIVTLHPVALYLLRDYRKQYRAGN 481
>pir||F71477 probable D-Ala/Gly permease - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3329193|gb|AAC68330.1| (AE001344)
D-Ala/Gly Permease [Chlamydia trachomatis]
Length = 455
Score = 175 bits (438), Expect = 2e-42
Identities = 140/490 (28%), Positives = 224/490 (45%), Gaps = 90/490 (18%)
Query: 23 LLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKTG-EGD-ITPFQALMATISGTVGIG 80
L+L G +LT L+G+QF LG S R L +++ G EG+ ++ ++A+ ++G G G
Sbjct: 20 LILCLGGILTWKLRGLQFTSLGMSFRLMLNNQQEQAGAEGEGVSRYEAVAGMLAGNFGTG 79
Query: 81 NIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRGKLPDGTMIGGTFNFLEK 140
NIAG+A A+ GGPGAL W+WI L +Y+ G +G + +K
Sbjct: 80 NIAGMAIAVASGGPGALLWIWIVTLFAAIVQYA--------------GAFLGCKYRQFQK 125
Query: 141 GFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFILAILFAALGLALLKEDY 200
E G I+ LG G R
Sbjct: 126 ESQEYIGGPIAC------------------LGYKMGSR---------------------- 145
Query: 201 LPTIGKILAVLFALFASIAAFGIGNMTQANSV----ADAIRTAFSIPEWVTGLALAVLTF 256
LAV F + + I AF GN+ Q NS+ AD + ++ G+ LA+ +
Sbjct: 146 ------FLAVAFCVASLITAFSAGNLVQVNSIISLCADGVSAKIAV-----GILLALSVY 194
Query: 257 IVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVIINDAFTGKA---- 312
V+ GG R+ + +PF+A YFLF++ V +I A+ ++ + A KA
Sbjct: 195 PVLAGGNTRVLRFSAKAIPFVAGFYFLFSVIVLAMHCDKILPALQLVFSSALGVKAGIAG 254
Query: 313 VAGGAIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLGPFIDTLIICS 372
V G +GQVI G+ R + + + G G ++ + +K+ +P V +L P I ++CS
Sbjct: 255 VGGYTLGQVISTGLNRAIMATDGGSGMVSILQSNSKSTNPVTDGLVTLLPPVI-VAVVCS 313
Query: 373 LTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFAYSTILAWSFYGR 432
+T + ++VTGAY G + AF + G +G +V I +ILF Y+T L+W
Sbjct: 314 ITMMVLLVTGAYDS--GELGVLMVMNAFKSSLGMLGGSVVLISMILFGYTTALSWFACAE 371
Query: 433 QNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLEDVWNFSDMMNGLMAI 492
+++ Y+ P K ANL K +++ I +G V ++ +W SD+ M I
Sbjct: 372 KSLEYMI------PGKRANLLLK------AIYIAIIPMGGVLGMQFIWALSDLGFCGMVI 419
Query: 493 PNLIGLIVLY 502
N I LI L+
Sbjct: 420 FNSISLIALF 429
>pir||B72024 d-alanine/glycine permease - Chlamydophila pneumoniae (strain
CWL029) >gi|4377194|gb|AAD19014.1| (AE001668)
D-Alanine/Glycine Permease [Chlamydophila pneumoniae
CWL029] >gi|8163536|gb|AAF73722.1| (AE002257)
sodium/alanine symporter family protein [Chlamydophila
pneumoniae AR39] >gi|8979250|dbj|BAA99084.1| (AP002548)
D-alanine/glycine permease [Chlamydophila pneumoniae
J138]
Length = 458
Score = 168 bits (422), Expect = 1e-40
Identities = 134/489 (27%), Positives = 223/489 (45%), Gaps = 85/489 (17%)
Query: 19 PMIVLLLGTGLLLTIVLKGIQFR--RLGWSIRFTLFEGRKKTGEGDITPFQALMATISGT 76
PMI+LL G LT L+G+QF +LG+++ + +++ ++A+ ++G
Sbjct: 19 PMILLLGG---FLTWKLRGLQFHGLKLGFNLMLQNKLDDSSSKANEVSSYEAVAGILAGN 75
Query: 77 VGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFRGKLPDGTMIGGTFN 136
G GNIAG+A A+ GGPGAL W+W+ AL+G +Y+ G+ +G +
Sbjct: 76 FGTGNIAGMAVALACGGPGALVWVWLAALLGAIVQYA--------------GSYLGSKYR 121
Query: 137 FLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGGLRVLAFILAILFAALGLALL 196
E E G I+ LA G+R
Sbjct: 122 KPEGNTGEFIGGPIAC--------------------LAFGMRK----------------- 144
Query: 197 KEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAIRTAFSIPEWVTGLALAVLTF 256
KILA FALF + AF GN Q + + + + + G+ LA++
Sbjct: 145 ---------KILAGFFALFTIMTAFCAGNCVQVSCIVPLCAEG-TPGKLLVGILLALVVI 194
Query: 257 IVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVIINDAFTGKA---- 312
V+ GG RI + ++PF+A Y + + + A I AI +I + AF KA
Sbjct: 195 PVLAGGNNRILRFSARVIPFIAGFYCISCGIILFQHASAILPAIKLICSSAFGIKAGLAG 254
Query: 313 VAGGAIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLGPFIDTLIICS 372
+ G + QVI G+ R + + + G G ++ A K+ +P V ++ P I +++CS
Sbjct: 255 IGGYTLSQVISTGINRAVMATDCGSGMVSILQANTKSKNPVVDGLVTLVPPVI-VMVVCS 313
Query: 373 LTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFAYSTILAWSFYGR 432
+T + ++V+GAY+ G + +AF + G +G ++V + + LF Y+TIL W
Sbjct: 314 ITMLVLIVSGAYSS--GAQGTLMVMSAFKNSLGSLGSVIVILAMALFGYTTILTWFACAE 371
Query: 433 QNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLEDVWNFSDMMNGLMAI 492
+++ Y+ P + ANL+ K ++V+ I +G V + +W SD M I
Sbjct: 372 KSLQYMI------PGRRANLWLK------AIYVLIIPLGGVIDMRMIWALSDTGFSGMVI 419
Query: 493 PNLIGLIVL 501
N I LI L
Sbjct: 420 LNCIALIAL 428
>pir||C71518 probable permease - Chlamydia trachomatis (serotype D, strain
UW3/Cx) >gi|3328837|gb|AAC68006.1| (AE001314) Amino acid
permease [Chlamydia trachomatis]
Length = 453
Score = 156 bits (391), Expect = 5e-37
Identities = 118/512 (23%), Positives = 218/512 (42%), Gaps = 93/512 (18%)
Query: 1 MGAIMDFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLF-------E 53
M A + F+ D +W VL+L G+L T K QF +L F LF
Sbjct: 1 MSAFLSFLTAFDDFIWSYIAFVLILLLGVLFTCKSKFAQFTQL--PAFFKLFYHFSKEAS 58
Query: 54 GRKKTGEGDITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYS 113
+K+ + + P + A+ G +GIGN+ G+ TA GGPGALFW+WI ++G +YS
Sbjct: 59 SKKENQKKGVHPLKVFFASAGGNIGIGNVVGIVTAASVGGPGALFWVWIAGILGSIVKYS 118
Query: 114 EGLLGVAFRGKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGL 173
E LG+ FR + GG FL+K +
Sbjct: 119 EVYLGIKFRQSDANNVYHGGPMFFLDKAYR------------------------------ 148
Query: 174 AGGLRVLAFILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVA 233
R+++ I+A+L G+ + + F++ A+ A
Sbjct: 149 ---TRIVSVIVAVLLCIYGVEIYQ--------------FSIIANTLA------------- 178
Query: 234 DAIRTAFSIPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFA 293
+ + +P+ + +L L V GG++RIG++ +++PF ++Y A + I+
Sbjct: 179 ----SCWDVPKLMAIASLLFLVMYAVQGGLQRIGKICSLVLPFFMLVYCGMAFYILIQEI 234
Query: 294 GQIPHAIAVIINDAFTGKAVAGG----AIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKT 349
+P + I AFTG GG + I G+ R +S + G+G ++ +
Sbjct: 235 HTLPALFSSIFRSAFTGHGAIGGFAGCTVASTIRQGLSRAAYSGDIGIGFDSIIQSETSA 294
Query: 350 DHPSRQAHVAMLGPFIDTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGE 409
+P QA ++++G +D L +C+L+ + ++ +G + + L G+ + + A + F YI
Sbjct: 295 TNPQTQAQLSIVGVIVDNL-VCTLSLLIVLASGVWHR-AGLEGSEIVEQALSFYFPYIRV 352
Query: 410 IMVAIGIILFAYSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFVIFIY 469
+ A + Y+TI+++ G++ ++ N K + VY +I +
Sbjct: 353 FLPAF-LFATGYTTIISYFLVGKKCANFIC----------GNKGSKFYTVYG---IIALP 398
Query: 470 VGAVKPLEDVWNFSDMMNGLMAIPNLIGLIVL 501
P + + L+ NL+G+ ++
Sbjct: 399 AFCFLPQDTALLVMSVSGALLLCLNLLGVFLM 430
>gb|AAF73592.1| (AE002337) sodium/alanine symporter family protein [Chlamydia
muridarum]
Length = 453
Score = 147 bits (367), Expect = 3e-34
Identities = 108/442 (24%), Positives = 189/442 (42%), Gaps = 76/442 (17%)
Query: 1 MGAIMDFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIR-FTLFEGRKKTG 59
M + F+ D +W +L+L G++ T QF +L + F F +
Sbjct: 1 MNTFLSFLTAFDDFIWSYVAFILILSLGVVFTYKSNFAQFTQLPSFFKLFYRFSKESSST 60
Query: 60 EGDIT----PFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEG 115
+ D+ P + A+ G +GIGN+ GV TA GGPGALFW+WI ++G +YSE
Sbjct: 61 QKDLKKGVHPLKVFFASAGGNIGIGNVVGVVTAASVGGPGALFWVWIAGILGSIVKYSEV 120
Query: 116 LLGVAFRGKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAG 175
LG+ FR G GG FL+K + +R+++ I IL I+
Sbjct: 121 YLGIKFRQSDAHGVYHGGPMFFLDKAYK-------TRIVSIIVAILLCIY---------- 163
Query: 176 GLRVLAFILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADA 235
G+ + F+ + L +P I I ++LF
Sbjct: 164 GVEIYQ------FSVITNTLTSCWNVPKIISIASLLF----------------------- 194
Query: 236 IRTAFSIPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQ 295
L V GG++RIG++ +++PF +IY A +
Sbjct: 195 ------------------LVIFAVQGGLQRIGKICSLVLPFFMLIYCGMAFYILAHEIHT 236
Query: 296 IPHAIAVIINDAFTGKAVAGG----AIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDH 351
+P + I AFTG GG + I G+ R +S + G+G ++ + +
Sbjct: 237 LPTLFSSIFRSAFTGHGAIGGFAGCTVASTIRQGLSRAAYSGDIGIGFDSIIQSETSATN 296
Query: 352 PSRQAHVAMLGPFIDTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIM 411
P QA ++++G +D L +C+L+ + ++ +G + + L G+ + + A + F YI I
Sbjct: 297 PQTQAQLSIVGVVVDNL-VCTLSLLIVLASGVWHRV-GLEGSEVVEQALSSYFPYI-RIF 353
Query: 412 VAIGIILFAYSTILAWSFYGRQ 433
+ + Y+TI+++ G++
Sbjct: 354 LPAFLFATGYTTIISYFLVGKK 375
>pir||A72067 d-ala/gly permease - Chlamydophila pneumoniae (strain CWL029)
>gi|4376826|gb|AAD18676.1| (AE001638) D-Ala/Gly Permease
[Chlamydophila pneumoniae CWL029]
>gi|8163388|gb|AAF73642.1| (AE002183) sodium/alanine
symporter family protein [Chlamydophila pneumoniae AR39]
>gi|8978907|dbj|BAA98742.1| (AP002547) D-Ala/Gly
permease [Chlamydophila pneumoniae J138]
Length = 449
Score = 129 bits (321), Expect = 8e-29
Identities = 104/510 (20%), Positives = 219/510 (42%), Gaps = 91/510 (17%)
Query: 1 MGAIMDFVNWLDGEVWGPPMIVLLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGR----K 56
M ++ ++ D W +L++ G+ + + QF + + + + +
Sbjct: 1 MNRLLSLLSVFDDFFWSYVAFILIIVLGVSFSWKSRFFQFTKFSQFCKLFRYYSQNPQER 60
Query: 57 KTGEGDITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGL 116
+T +G + P + A+ G +GIGN+ G+ TA GGPGALFW+W
Sbjct: 61 ETKQG-VHPLKVFFASAGGNIGIGNVVGIVTAACIGGPGALFWVW--------------- 104
Query: 117 LGVAFRGKLPDGTMIGGTFNFLEKGFAEVKGTGISRVIASIFTILFAIFLAKDGLGLAGG 176
I G F + K G + L +DG+ G
Sbjct: 105 --------------IAGIFGSIVKYSEVYLGIKFRK-------------LDRDGVYQGGP 137
Query: 177 LRVLAFILAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFGIGNMTQANSVADAI 236
+ L +K P + I+A+L ++ + Q + + D++
Sbjct: 138 MYFL---------------IKAFKTPVVSVIVAILLCIYGV-------EIYQFSVITDSL 175
Query: 237 RTAFSIPEWVTGLALAVLTFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQI 296
+++P+ L L L F + GG++RIG++ +++PF ++Y ++ + +K +
Sbjct: 176 AHCWNLPKVYPMLGLLFLVFYAIRGGLQRIGKICSIVLPFFMLLYCALSLYILVKEFHTL 235
Query: 297 PHAIAVIINDAFTGKAVAGG----AIGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHP 352
PH ++ + + AF G++ GG + I G+ R +S + G+G ++ + + P
Sbjct: 236 PHLLSTVFSSAFKGQSALGGFAGCTVATTIHQGISRAAYSGDIGIGFDSIIQSESSAKDP 295
Query: 353 SRQAHVAMLGPFIDTLIICSLTGISIVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMV 412
S QA ++++G ID L IC+L+ + ++ +G+++ + N + + + A F + + +
Sbjct: 296 STQAQLSIVGIAIDNL-ICTLSLLMVLASGSWSLGLE-NASQVVEHTLASYFPMV-KFFL 352
Query: 413 AIGIILFAYSTILAWSFYGRQNVMYLAKWITQDPQKFANLYPKLHLVYNLLFV-IFIYVG 471
+ Y+TI+++ G++ +L + N K++ +Y LL + +F ++
Sbjct: 353 PTFFFVTGYTTIISYFLVGKKCAKFL----------YGNTGAKIYTLYGLLILPLFCFLS 402
Query: 472 AVKPLEDVWNFSDMMNGLMAIPNLIGLIVL 501
L + L+ NL+G+ +L
Sbjct: 403 QNTAL----LIMSVSGALLLCFNLLGVFIL 428
>gb|AAF73532.1| (AE002278) sodium/alanine symporter family protein [Chlamydia
muridarum]
Length = 455
Score = 125 bits (310), Expect = 2e-27
Identities = 90/305 (29%), Positives = 153/305 (49%), Gaps = 28/305 (9%)
Query: 206 KILAVLFALFASIAAFGIGNMTQANSV----ADAIRTAFSIPEWVTGLALAVLTFIVVIG 261
+ LA F + I+AF GN Q N + AD++ T + G+ LA+ + V+ G
Sbjct: 145 RFLAGAFCIAGLISAFFAGNFVQVNGIVSLCADSVYTKI-----LAGVLLALSIYPVLAG 199
Query: 262 GIKRIGEVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVIINDAFTGKA----VAGGA 317
G R+ + +PF+A YFLF++ V +I A+ ++ + A KA + G
Sbjct: 200 GNTRVLRFSAKAIPFVAGFYFLFSVIVLAIHCDKILPALHLVFSSALGIKAGIAGIGGYT 259
Query: 318 IGQVIIWGVKRGLFSNEAGLGTATLAHAAAKTDHPSRQAHVAMLGPFIDTLIICSLTGIS 377
IGQVI G+ R + + + G G ++ + +K+ +P V +L P I ++CS+T +
Sbjct: 260 IGQVISTGLNRAIMATDCGNGMVSILQSNSKSSNPVADGLVTLLPPVI-VAVVCSITMMV 318
Query: 378 IVVTGAYAKYPDLNGAPLTQAAFAEAFGYIGEIMVAIGIILFAYSTILAWSFYGRQNVMY 437
++VTGAY G + AF + G G +V I ++LF Y+T+L+W +++ Y
Sbjct: 319 LLVTGAYES--GELGVLMVMHAFKSSLGMWGGSVVFISMLLFGYTTVLSWFACAEKSLEY 376
Query: 438 LAKWITQDPQKFANLYPKLHLVYNLLFVIFIYVGAVKPLEDVWNFSDMMNGLMAIPNLIG 497
+ P + ANL+ K ++++ I +G V ++ VW SD+ M I N I
Sbjct: 377 MI------PGRRANLWLK------AVYILVIPMGGVLGMQSVWALSDLGFCGMVIFNAIS 424
Query: 498 LIVLY 502
LI L+
Sbjct: 425 LIALF 429
Score = 83.9 bits (204), Expect = 4e-15
Identities = 87/335 (25%), Positives = 141/335 (41%), Gaps = 76/335 (22%)
Query: 23 LLLGTGLLLTIVLKGIQFRRLGWSIRFTLFEGRKKT---GEGDITPFQALMATISGTVGI 79
L+L G +LT L+G+QF LG S R L ++ + G+G ++ ++A+ ++G G
Sbjct: 20 LILFLGGILTWKLRGLQFTSLGTSFRLMLSNQQEPSVSEGKG-VSRYEAVAGMLAGNFGT 78
Query: 80 GNIAGVATAIHFGGPGALFWMWITALVGMATRYSEGLLGVAFR----------------- 122
GNIAG+A A+ GGPGAL W+WI + +Y+ LG +R
Sbjct: 79 GNIAGMAIAVVNGGPGALLWIWIVTFLAAIVQYAGAFLGCKYRQFQAASQEYIGGPIACL 138
Query: 123 GKLPDGTMIGGTF-------NFLEKGFAEVKGTGISRVIASIFT-ILFAIFLAKDGLG-L 173
G + G F F F +V G +S S++T IL + LA L
Sbjct: 139 GYKMKSRFLAGAFCIAGLISAFFAGNFVQVNGI-VSLCADSVYTKILAGVLLALSIYPVL 197
Query: 174 AGG-LRVLAFI---------LAILFAALGLALLKEDYLPTIGKILAVLFALFASIAAFG- 222
AGG RVL F LF+ + LA+ + LP + + + + A IA G
Sbjct: 198 AGGNTRVLRFSAKAIPFVAGFYFLFSVIVLAIHCDKILPALHLVFSSALGIKAGIAGIGG 257
Query: 223 --IG--------------------------NMTQANSVADAIRTAFSIPEWVTGLALAVL 254
IG N +N VAD + T +P + + ++
Sbjct: 258 YTIGQVISTGLNRAIMATDCGNGMVSILQSNSKSSNPVADGLVTL--LPPVIVAVVCSIT 315
Query: 255 TFIVVIGGIKRIGEVAEMLVPFMAIIYFLFAIGVW 289
++++ G GE+ ++V + F ++G+W
Sbjct: 316 MMVLLVTGAYESGELGVLMV----MHAFKSSLGMW 346
>pir||PC4092 alanine carrier protein - thermophilic bacterium PS3 (fragment)
>gi|565288|dbj|BAA07635.1| (D38778) alanine carrier
protein [thermophilic bacterium PS3]
Length = 116
Score = 76.1 bits (184), Expect = 9e-13
Identities = 30/58 (51%), Positives = 42/58 (71%)
Query: 57 KTGEGDITPFQALMATISGTVGIGNIAGVATAIHFGGPGALFWMWITALVGMATRYSE 114
K+ E ++ FQAL ++SG +G+GN+AG AT I +GGPGA+FWMW+ +G AT Y E
Sbjct: 9 KSSEAGVSSFQALTMSLSGRIGVGNVAGTATGIAYGGPGAVFWMWVITFIGAATAYVE 66
>emb|CAA60205.1| (X86480) hypD [Clostridium perfringens]
Length = 127
Score = 71.8 bits (173), Expect = 2e-11
Identities = 35/100 (35%), Positives = 60/100 (60%)
Query: 208 LAVLFALFASIAAFGIGNMTQANSVADAIRTAFSIPEWVTGLALAVLTFIVVIGGIKRIG 267
L ++F++ +I + N QAN+V+ A +AF + G+ LA++T +V+ GGI R+
Sbjct: 28 LGIIFSILITICFGFVFNAVQANTVSVAFNSAFGLSRGAIGIILAIVTALVIFGGIHRVA 87
Query: 268 EVAEMLVPFMAIIYFLFAIGVWIKFAGQIPHAIAVIINDA 307
+V+E++VP +A++Y L AI V I +IP +I A
Sbjct: 88 KVSEIIVPILAVLYILIAIIVLILNITEIPSVFKLIFESA 127
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.145 0.441
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189229997
Number of Sequences: 2977
Number of extensions: 8033655
Number of successful extensions: 28463
Number of sequences better than 1.0e-10: 43
Number of HSP's better than 0.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 28246
Number of HSP's gapped (non-prelim): 84
length of query: 517
length of database: 189,106,746
effective HSP length: 52
effective length of query: 465
effective length of database: 157,985,422
effective search space: 73463221230
effective search space used: 73463221230
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 167 (69.5 bits)