BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1531 (PAB1531) DE:Hypothetical protein
(690 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75036 hypothetical protein PAB1531 - Pyrococcus abyssi (st... 1389 0.0
pir||D71127 hypothetical protein PH0785 - Pyrococcus horikoshii ... 584 e-165
>pir||C75036 hypothetical protein PAB1531 - Pyrococcus abyssi (strain Orsay)
>gi|5458697|emb|CAB50184.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 690
Score = 1389 bits (3555), Expect = 0.0
Identities = 690/690 (100%), Positives = 690/690 (100%)
Query: 1 MMFLLSILFALLILTRNPWALLLSSLYLGFLLGSRFLENKDAILLSPGIGFSFIILLVAT 60
MMFLLSILFALLILTRNPWALLLSSLYLGFLLGSRFLENKDAILLSPGIGFSFIILLVAT
Sbjct: 1 MMFLLSILFALLILTRNPWALLLSSLYLGFLLGSRFLENKDAILLSPGIGFSFIILLVAT 60
Query: 61 LSKLKIPVIAVYPLVVLLTFALSWKLKVKLGNTDIKTLWILTLASFLALAVRDFFFLLPD 120
LSKLKIPVIAVYPLVVLLTFALSWKLKVKLGNTDIKTLWILTLASFLALAVRDFFFLLPD
Sbjct: 61 LSKLKIPVIAVYPLVVLLTFALSWKLKVKLGNTDIKTLWILTLASFLALAVRDFFFLLPD 120
Query: 121 YRAADTWFHGSKVRMIIDSGTLYFTSVPKYFSSGIVSYPPGYHALVFYLSGNVPRNIIYA 180
YRAADTWFHGSKVRMIIDSGTLYFTSVPKYFSSGIVSYPPGYHALVFYLSGNVPRNIIYA
Sbjct: 121 YRAADTWFHGSKVRMIIDSGTLYFTSVPKYFSSGIVSYPPGYHALVFYLSGNVPRNIIYA 180
Query: 181 MNALRIFEFVYLPVATYLVVKEIDKRAAYLSALITPFSALYYYFVQYALLPAFFNYLMFL 240
MNALRIFEFVYLPVATYLVVKEIDKRAAYLSALITPFSALYYYFVQYALLPAFFNYLMFL
Sbjct: 181 MNALRIFEFVYLPVATYLVVKEIDKRAAYLSALITPFSALYYYFVQYALLPAFFNYLMFL 240
Query: 241 FAIFLLVKSFEGDVNPVLVGVISGVILLVHPYQFIVFQALSLFYMLFKREMKVFLVQLAV 300
FAIFLLVKSFEGDVNPVLVGVISGVILLVHPYQFIVFQALSLFYMLFKREMKVFLVQLAV
Sbjct: 241 FAIFLLVKSFEGDVNPVLVGVISGVILLVHPYQFIVFQALSLFYMLFKREMKVFLVQLAV 300
Query: 301 SLLIFLAFYPSPGKYMTNSVNLYSSYSNKDNWDFVISLLKYSFLDNGQALLGLFFVLGLV 360
SLLIFLAFYPSPGKYMTNSVNLYSSYSNKDNWDFVISLLKYSFLDNGQALLGLFFVLGLV
Sbjct: 301 SLLIFLAFYPSPGKYMTNSVNLYSSYSNKDNWDFVISLLKYSFLDNGQALLGLFFVLGLV 360
Query: 361 YSTLRGNKLVRVITLTFLFILLATINKVWPRLHVPIISAIWNSERTFMLATPLIPIIEGF 420
YSTLRGNKLVRVITLTFLFILLATINKVWPRLHVPIISAIWNSERTFMLATPLIPIIEGF
Sbjct: 361 YSTLRGNKLVRVITLTFLFILLATINKVWPRLHVPIISAIWNSERTFMLATPLIPIIEGF 420
Query: 421 GLSIFKNRKFAYSLLAFSLILAYPFIRVEHLASESSYLLDDNVVSFIEKVGNVDGEVGTA 480
GLSIFKNRKFAYSLLAFSLILAYPFIRVEHLASESSYLLDDNVVSFIEKVGNVDGEVGTA
Sbjct: 421 GLSIFKNRKFAYSLLAFSLILAYPFIRVEHLASESSYLLDDNVVSFIEKVGNVDGEVGTA 480
Query: 481 CIFDSGRWIPILTDAKITCISKGERPRYLYLDTRGAGELTPYPLNLEDFYRDYKVLMFEK 540
CIFDSGRWIPILTDAKITCISKGERPRYLYLDTRGAGELTPYPLNLEDFYRDYKVLMFEK
Sbjct: 481 CIFDSGRWIPILTDAKITCISKGERPRYLYLDTRGAGELTPYPLNLEDFYRDYKVLMFEK 540
Query: 541 GLWLLEKGNGSIPMDVCSYYSLHSDEISWLKSTNHFVYGWIIKNYATQKLRLEKFPYAIS 600
GLWLLEKGNGSIPMDVCSYYSLHSDEISWLKSTNHFVYGWIIKNYATQKLRLEKFPYAIS
Sbjct: 541 GLWLLEKGNGSIPMDVCSYYSLHSDEISWLKSTNHFVYGWIIKNYATQKLRLEKFPYAIS 600
Query: 601 VSNVSTIAFCSDKYYSKFKIELGGTPGYKVSLFLDGKLLGTYEFTETGSLAVTISKLVKP 660
VSNVSTIAFCSDKYYSKFKIELGGTPGYKVSLFLDGKLLGTYEFTETGSLAVTISKLVKP
Sbjct: 601 VSNVSTIAFCSDKYYSKFKIELGGTPGYKVSLFLDGKLLGTYEFTETGSLAVTISKLVKP 660
Query: 661 GFHFLRIECPRCNYKHPLGMRRVVFYEKET 690
GFHFLRIECPRCNYKHPLGMRRVVFYEKET
Sbjct: 661 GFHFLRIECPRCNYKHPLGMRRVVFYEKET 690
>pir||D71127 hypothetical protein PH0785 - Pyrococcus horikoshii
>gi|3257195|dbj|BAA29878.1| (AP000003) 598aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 598
Score = 584 bits (1489), Expect = e-165
Identities = 291/594 (48%), Positives = 404/594 (67%), Gaps = 11/594 (1%)
Query: 100 ILTLASFLALAVRDFFFLLPDYRAADTWFHGSKVRMIIDSGTLYFTSVPKYFSSGIVSYP 159
++ ++S L L VR F+FLLPDYRAADTWFH SKV+MII +GT+YF+ VP YFS+ I+ YP
Sbjct: 1 MIAISSLLGLVVRSFYFLLPDYRAADTWFHASKVKMIISTGTVYFSHVPGYFSAQIIKYP 60
Query: 160 PGYHALVFYLSGNVPRNIIYAMNALRIFEFVYLPVATYLVVKEIDKRAAYLSALITPFSA 219
PGYHAL+ LSG NIIY MN+LRIFE +YLP YLV +EI + +AL+T FSA
Sbjct: 61 PGYHALIALLSGFKGENIIYGMNSLRIFEILYLPALAYLVGREIRREIGIFAALLTNFSA 120
Query: 220 LYYYFVQYALLPAFFNYLMFLFAIFLLVKSF--EGDVNPVLVGVISGVILLVHPYQFIVF 277
LYYYFVQYALLPAF NY++FL +++ L + G +++G+ SG++ +VHPYQ+I+F
Sbjct: 121 LYYYFVQYALLPAFTNYMIFLLSVYFLEVAMRDRGIKISIMLGITSGIMAVVHPYQYILF 180
Query: 278 QALSLFYMLFKREMKVFLVQLAVSLLIFLAFYPSPGKYMTNSVNLYSSYSNKDNWDFVIS 337
QA + F + + KVFL QL +S +FL F P +Y + + +SNKDN +F+IS
Sbjct: 181 QATAFFTTILSKNRKVFLTQLILSASVFLVFTPFSTEYAVKGILMNPRFSNKDNPNFLIS 240
Query: 338 LLKYSFLDNGQALLGLFFVLGLVYSTLRGNKLVRVITLTFLFILLATINKVWPRLHVPII 397
+L+YSF+DNGQ L GL +L L+ S +RG + + ++L+FL I+ ++K + + +P +
Sbjct: 241 ILRYSFVDNGQILFGLSLILALILSLMRGGSIEKGLSLSFLLIIFMMLDKTYLNIRIPYL 300
Query: 398 SAIWNSERTFMLATPLIPIIEGFGLS-IFKNRK-FAYSLLAFSLILAYPFIRVEHLASES 455
SA+WNSER FML TPLIPI+EG GL+ IFK +K A L ++++YP++R+EHLASES
Sbjct: 301 SAVWNSERAFMLTTPLIPILEGIGLNYIFKVKKELAAIFLVVGMMISYPYLRIEHLASES 360
Query: 456 SYLLDDNVVSFIEKVGNVDGE--VGTACIFDSGRWIPILTDAKITCISKG-ERPRYLYLD 512
SYLLD VV FI++V + G V TAC FDSGRWIPILT+ I C SK RYLY+D
Sbjct: 361 SYLLDPEVVDFIKEVSRIAGNETVMTACEFDSGRWIPILTETPIVCYSKNISEARYLYVD 420
Query: 513 TRGAGELTPYPLNLEDFYRDYKVLMFEKGLWLLEKGNGSIPM-DVCSYYSLHSDEISWLK 571
TRGAGE+ YP+N+ +F D +V++F GLWLL+ P DV SYY + IS++K
Sbjct: 421 TRGAGEIEVYPINIVNFL-DRRVVLFRDGLWLLDLNKHGKPTGDVLSYYHTNG-TISYIK 478
Query: 572 STNHFVYGWIIKNYATQKLRLEKFPYAISVSNVSTIAFCSDKYYSKFKIELGGTPGYKVS 631
T FVYGW+ KNYAT KLRL+ FPYAI + N S+I F + + + + +I + G G +
Sbjct: 479 DTKWFVYGWVNKNYATMKLRLKGFPYAIMIVNTSSILFSTSESFDRIEIRISGKKGRALE 538
Query: 632 LFLDGKLLGTYEF-TETGSLAVTISKLVKPGFHFLRIECPRCNYKHPLGMRRVV 684
++LDG+ + YEF TE G + + V PG H+L + P YK P+G++ ++
Sbjct: 539 IYLDGEFIKRYEFKTEYGDERIVLKVRVDPGMHYLILYSPNTTYKIPIGVKEIM 592
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.145 0.440
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 258469075
Number of Sequences: 2977
Number of extensions: 11203303
Number of successful extensions: 35167
Number of sequences better than 1.0e-10: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35159
Number of HSP's gapped (non-prelim): 2
length of query: 690
length of database: 189,106,746
effective HSP length: 53
effective length of query: 637
effective length of database: 157,386,935
effective search space: 100255477595
effective search space used: 100255477595
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 168 (69.9 bits)