BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1532 (PAB1532) DE:Hypothetical protein
         (675 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75036 hypothetical protein PAB1532 - Pyrococcus abyssi (st...  1331  0.0
pir||E71127 hypothetical protein PH0786 - Pyrococcus horikoshii ...   445  e-124

>pir||B75036 hypothetical protein PAB1532 - Pyrococcus abyssi (strain Orsay)
           >gi|5458696|emb|CAB50183.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 675
           
 Score = 1331 bits (3407), Expect = 0.0
 Identities = 675/675 (100%), Positives = 675/675 (100%)

Query: 1   MKRKPELLMLLVFVVYIALRLPLLFPTNEYWDYDEGTYLLIARYINLGYLPYRDVLAVHP 60
           MKRKPELLMLLVFVVYIALRLPLLFPTNEYWDYDEGTYLLIARYINLGYLPYRDVLAVHP
Sbjct: 1   MKRKPELLMLLVFVVYIALRLPLLFPTNEYWDYDEGTYLLIARYINLGYLPYRDVLAVHP 60

Query: 61  PLFYYLLALWLRVFGDSYIVGRLFSLSFGALSLILAYKVGKIVRDEMLGVLFSLLLALDP 120
           PLFYYLLALWLRVFGDSYIVGRLFSLSFGALSLILAYKVGKIVRDEMLGVLFSLLLALDP
Sbjct: 61  PLFYYLLALWLRVFGDSYIVGRLFSLSFGALSLILAYKVGKIVRDEMLGVLFSLLLALDP 120

Query: 121 QTIILNSTVFHASLIEFFVLLTLYLYLKGKYLLMAFLLGVGTSVKHTFLPYAVGVFMFSW 180
           QTIILNSTVFHASLIEFFVLLTLYLYLKGKYLLMAFLLGVGTSVKHTFLPYAVGVFMFSW
Sbjct: 121 QTIILNSTVFHASLIEFFVLLTLYLYLKGKYLLMAFLLGVGTSVKHTFLPYAVGVFMFSW 180

Query: 181 VGGKIKIKKLNFWKSLLLTYSTYLIVVYTLISLYPGDVSRMILIVPGFGEVKFKPNLYAL 240
           VGGKIKIKKLNFWKSLLLTYSTYLIVVYTLISLYPGDVSRMILIVPGFGEVKFKPNLYAL
Sbjct: 181 VGGKIKIKKLNFWKSLLLTYSTYLIVVYTLISLYPGDVSRMILIVPGFGEVKFKPNLYAL 240

Query: 241 LLFFILLAYYVYRDGEILVSRIDILNGLRLFFMFILGKLLIEAPQIAIAGYGYIRQVYLM 300
           LLFFILLAYYVYRDGEILVSRIDILNGLRLFFMFILGKLLIEAPQIAIAGYGYIRQVYLM
Sbjct: 241 LLFFILLAYYVYRDGEILVSRIDILNGLRLFFMFILGKLLIEAPQIAIAGYGYIRQVYLM 300

Query: 301 NSGRGIPLMSIPDLIAKTLRDIQKGNYEMLYPYILMIFLAMLLISERRPANSTLKGLLAS 360
           NSGRGIPLMSIPDLIAKTLRDIQKGNYEMLYPYILMIFLAMLLISERRPANSTLKGLLAS
Sbjct: 301 NSGRGIPLMSIPDLIAKTLRDIQKGNYEMLYPYILMIFLAMLLISERRPANSTLKGLLAS 360

Query: 361 VALSYLVFPLPGVPRFLYPLFLLIILYLSAMVTNLNLRKLAALTIILLAINSIFIESFIT 420
           VALSYLVFPLPGVPRFLYPLFLLIILYLSAMVTNLNLRKLAALTIILLAINSIFIESFIT
Sbjct: 361 VALSYLVFPLPGVPRFLYPLFLLIILYLSAMVTNLNLRKLAALTIILLAINSIFIESFIT 420

Query: 421 GKTKLAFAVHSDSLRLELTKVVPQDSLAYSFNPMNSYLLNLNEPPYYIDNFGAFYLGNVS 480
           GKTKLAFAVHSDSLRLELTKVVPQDSLAYSFNPMNSYLLNLNEPPYYIDNFGAFYLGNVS
Sbjct: 421 GKTKLAFAVHSDSLRLELTKVVPQDSLAYSFNPMNSYLLNLNEPPYYIDNFGAFYLGNVS 480

Query: 481 PEQFFSYLEENNVSYIIISTWLRGIMDRDPRLSKLYGTTLRLIDSKYKLIYAHSFSNGEL 540
           PEQFFSYLEENNVSYIIISTWLRGIMDRDPRLSKLYGTTLRLIDSKYKLIYAHSFSNGEL
Sbjct: 481 PEQFFSYLEENNVSYIIISTWLRGIMDRDPRLSKLYGTTLRLIDSKYKLIYAHSFSNGEL 540

Query: 541 MAVYMRSKGGKSFITLNVTKVKIAFNANGTTLFYLVPHRDVKEVTLRAVGDEYLVTFGNS 600
           MAVYMRSKGGKSFITLNVTKVKIAFNANGTTLFYLVPHRDVKEVTLRAVGDEYLVTFGNS
Sbjct: 541 MAVYMRSKGGKSFITLNVTKVKIAFNANGTTLFYLVPHRDVKEVTLRAVGDEYLVTFGNS 600

Query: 601 TEIVSIAGNEVSISTAFPVKMEFLEPPVLIEYTLYLQKHLIRVTSGVFRINGTIISIIPE 660
           TEIVSIAGNEVSISTAFPVKMEFLEPPVLIEYTLYLQKHLIRVTSGVFRINGTIISIIPE
Sbjct: 601 TEIVSIAGNEVSISTAFPVKMEFLEPPVLIEYTLYLQKHLIRVTSGVFRINGTIISIIPE 660

Query: 661 NGTISLVLYKRDSRL 675
           NGTISLVLYKRDSRL
Sbjct: 661 NGTISLVLYKRDSRL 675


>pir||E71127 hypothetical protein PH0786 - Pyrococcus horikoshii
           >gi|3257196|dbj|BAA29879.1| (AP000003) 669aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 669
           
 Score =  445 bits (1133), Expect = e-124
 Identities = 258/669 (38%), Positives = 388/669 (57%), Gaps = 20/669 (2%)

Query: 1   MKRKPELLMLLVFVVYIALRLPLLFPTNEYWDYDEGTYLLIARYINLGYLPYRDVLAVHP 60
           MKR+   ++L V  VYI LR+P LF  +E+ DYDEGTYLLIAR IN GYLPYRD+ AVHP
Sbjct: 1   MKRRTIFILLGVLGVYIILRVPFLFSMDEFSDYDEGTYLLIARSINQGYLPYRDIFAVHP 60

Query: 61  PLFYYLLALWLRVFGDSYIVGRLFSLSFGALSLILAYKVGKIVRDEMLGVLFSLLLALDP 120
           PLFYYLLALWLR+FGDS I GRL S+  G LS+ L Y +G  +  E  G+L + +L LDP
Sbjct: 61  PLFYYLLALWLRIFGDSLIAGRLLSMFIGILSVFLGYSIGSKLGGEDTGLLLAGILTLDP 120

Query: 121 QTIILNSTVFHASLIEFFVLLTLYLYLKG-KYLLMAFLLGVGTSVKHTFLPYAVGVFMF- 178
             I  N++V+H +LIEF VLLT+YL+L+G   L+ AF+LG+ ++VKHT LPYA+   +F 
Sbjct: 121 FLIFYNASVYHLTLIEFSVLLTIYLWLRGTSDLITAFILGILSTVKHTLLPYALAFLLFR 180

Query: 179 SWVGGKIKIKKLNFWKSLLLTYSTYLIVVYTLISLYPGDVSRMILIVPGF--GEV--KFK 234
           S    +IKI K    ++  L Y+  LIV   LI  YP  +SR +LI+PG   GE+   F 
Sbjct: 181 SSEFSEIKIDKKKVVRAFFLAYTFLLIVETLLIVAYPNQLSRNLLILPGIKKGEIIGSFL 240

Query: 235 PNLYALLLFFILLAYYVYRDGEILVSRIDILNGLRLFFMFILGKLLIEAPQIAIAGYGYI 294
           P L  L+ F   L  +       ++  + +   L +   FILG+ L+E P   +    Y 
Sbjct: 241 PVLLFLIFFLFTLRAFSTFSFTKIIKMVKLKVALLMLLAFILGRGLLEIPLGLMVSKYYF 300

Query: 295 RQVYLMNSGRGIPLMSIPDLIAKTLRDIQKGNYEMLYPYILMIFLAMLLISERRPANSTL 354
             VY+ NS R +P ++IP+L A  LR I++G  E+LYPY  ++ L  +L+      +S +
Sbjct: 301 SMVYMANSSRYVPFLNIPNLFADILRVIREGKLELLYPYYSILILTFILLIRGGRGSSKV 360

Query: 355 KGLLASVALSYLVFPLPGVPRFLYPLFLLIILYLSAMVTNLNLRKLAALTIILLAINSIF 414
             L    AL Y +FP+  V RFLYP+ LLII+YL++ +   N   +A +  ++  ++   
Sbjct: 361 GALALMTALMYFIFPIQPVARFLYPILLLIIIYLASALPQ-NKVNIALVFSLIFILSVTM 419

Query: 415 IESFITGKTKLAFAVHSDSLRLELTKVVPQDSLAYSFNPMNSYLLNLNEPPYYIDNFGAF 474
           +     G+  + FA H+  +R E   ++      Y+ NPM++YL N++EP +YIDNFG  
Sbjct: 420 VAKVPKGELAIPFATHTKEIREESRVILENIREGYAMNPMDAYLFNIDEPRFYIDNFGIL 479

Query: 475 YLGNVSPEQFFSYLEENNVSYIIISTWLRGIMDRDPRLSKLYGTTLRLIDSKYKLIYAHS 534
           YL    P++F   LE  N SY+++STW+  IMD  P LS  YG  ++ +     L+Y  +
Sbjct: 480 YLKGEDPKRF---LESLNTSYVVLSTWVFAIMDNSPVLSAEYGEIIKYLVENGTLVYGLA 536

Query: 535 FSNGELMAVYMRSKGGKSFITLNVTKVKIAFNANGTTLFYLVPHRDVKEVTLRAVGDEY- 593
           +++ E + VY  S    S I+  ++   +  + NG+ +F + P  D +++ ++ +   Y 
Sbjct: 537 YTDTEKLLVY--SLARNSGISFFISSKALDVHYNGSLIFKIKPSNDTRKILVKQISSHYY 594

Query: 594 -LVTFGNSTEIV--SIAGNEVSISTAFPVKMEFLEPPVLI-EYTLYLQKHLIRVTSG-VF 648
            L T GN++  +   + GN + IS   PV +EF  P  +I E  +  +   I +  G + 
Sbjct: 595 LLYTSGNNSRTIYLKVIGNRIEISD--PVYIEFPAPVCIIGENRIRYKDFEIGIVKGNMS 652

Query: 649 RINGTIISI 657
           RI+ T+I +
Sbjct: 653 RISDTLIKV 661


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.328    0.146    0.426 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 241782092
Number of Sequences: 2977
Number of extensions: 10397569
Number of successful extensions: 31454
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31442
Number of HSP's gapped (non-prelim): 2
length of query: 675
length of database: 189,106,746
effective HSP length: 54
effective length of query: 621
effective length of database: 156,788,448
effective search space: 97365626208
effective search space used: 97365626208
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 168 (69.9 bits)