BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1533 (PAB1533) DE:Hypothetical protein
         (178 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75036 hypothetical protein PAB1533 - Pyrococcus abyssi (st...   355  2e-97
pir||F71127 hypothetical protein PH0787 - Pyrococcus horikoshii ...   217  7e-56

>pir||A75036 hypothetical protein PAB1533 - Pyrococcus abyssi (strain Orsay)
           >gi|5458695|emb|CAB50182.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 178
           
 Score =  355 bits (901), Expect = 2e-97
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MLVLLHAEGANVRECIRKITEDATTKLPPRGRIVNSRVRIEMGAFFSLSITLVIDVSEPY 60
           MLVLLHAEGANVRECIRKITEDATTKLPPRGRIVNSRVRIEMGAFFSLSITLVIDVSEPY
Sbjct: 1   MLVLLHAEGANVRECIRKITEDATTKLPPRGRIVNSRVRIEMGAFFSLSITLVIDVSEPY 60

Query: 61  KPGILVDYVIGGKENSILELEEKFNSLIPPDAEIVDFSWETYTTPVTRRTYAVGVLTYNT 120
           KPGILVDYVIGGKENSILELEEKFNSLIPPDAEIVDFSWETYTTPVTRRTYAVGVLTYNT
Sbjct: 61  KPGILVDYVIGGKENSILELEEKFNSLIPPDAEIVDFSWETYTTPVTRRTYAVGVLTYNT 120

Query: 121 PTQELPELKFRDRRKVIAKVLELLNYNPKALNISELARMFNVSRDTIYNDIQQILKGK 178
           PTQELPELKFRDRRKVIAKVLELLNYNPKALNISELARMFNVSRDTIYNDIQQILKGK
Sbjct: 121 PTQELPELKFRDRRKVIAKVLELLNYNPKALNISELARMFNVSRDTIYNDIQQILKGK 178


>pir||F71127 hypothetical protein PH0787 - Pyrococcus horikoshii
           >gi|3257197|dbj|BAA29880.1| (AP000003) 183aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 183
           
 Score =  217 bits (547), Expect = 7e-56
 Identities = 103/178 (57%), Positives = 141/178 (78%), Gaps = 2/178 (1%)

Query: 1   MLVLLHAEGANVRECIRKITEDATTKLPPRGRIVNSRVRIEMGAFFSLSITLVIDVSEPY 60
           ML+LLH+EGA+VR+CIR +   +  +LP +G+I +S+++I  GAF S+++ L++D+++PY
Sbjct: 1   MLILLHSEGASVRDCIRTLIRMSKNRLPQQGKITSSKIKISTGAFLSVNLALIVDLAQPY 60

Query: 61  KPGILVDY-VIGGKENSILELEEKFNSLIPPDAEIVDFSWETYTTPVTRRTYAVGVLTYN 119
           KPGI V+Y V G K+ ++ +L+EK NS + P+ E+ DF  ETYTTPVTRRTYA+GVL YN
Sbjct: 61  KPGIAVEYSVSGSKDKALEDLQEKLNSYVTPEIEVFDFQIETYTTPVTRRTYAIGVLVYN 120

Query: 120 TPTQ-ELPELKFRDRRKVIAKVLELLNYNPKALNISELARMFNVSRDTIYNDIQQILK 176
            P +    +   ++RRK++AKVLELLNYN KALNISELARMF VSRDTIYNDIQQI+K
Sbjct: 121 KPRKANTKDFMLQNRRKILAKVLELLNYNIKALNISELARMFGVSRDTIYNDIQQIIK 178


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.138    0.389 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65812039
Number of Sequences: 2977
Number of extensions: 2664403
Number of successful extensions: 6853
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6849
Number of HSP's gapped (non-prelim): 2
length of query: 178
length of database: 189,106,746
effective HSP length: 55
effective length of query: 123
effective length of database: 156,189,961
effective search space: 19211365203
effective search space used: 19211365203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)