BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1537 (PAB1537) DE:Hypothetical protein
(179 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75035 hypothetical protein PAB1537 - Pyrococcus abyssi (st... 358 2e-98
pir||C71128 hypothetical protein PH0792 - Pyrococcus horikoshii ... 296 1e-79
sp|Q58954|YF59_METJA HYPOTHETICAL PROTEIN MJ1559 >gi|2128936|pir... 192 2e-48
sp|O27140|YA68_METTH HYPOTHETICAL PROTEIN MTH1068 >gi|7429980|pi... 134 5e-31
gi|11498420 conserved hypothetical protein [Archaeoglobus fulgid... 113 2e-24
pir||A72425 conserved hypothetical protein - Thermotoga maritima... 105 4e-22
pir||G72669 hypothetical protein APE0781 - Aeropyrum pernix (str... 105 4e-22
gb|AAK42346.1| Conserved hypothetical protein [Sulfolobus solfat... 103 2e-21
dbj|BAA85416.1| (AP000615) similar to Aquifex aeolicus section 6... 82 6e-15
pir||G70411 conserved hypothetical protein aq_1292 - Aquifex aeo... 79 4e-14
>pir||E75035 hypothetical protein PAB1537 - Pyrococcus abyssi (strain Orsay)
>gi|5458691|emb|CAB50178.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 179
Score = 358 bits (910), Expect = 2e-98
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MRFFVSGMPGVGKTTLAKRIADEIRREGYKVGGIITQEIRTGPKRSGFRVIALDTGEIGR 60
MRFFVSGMPGVGKTTLAKRIADEIRREGYKVGGIITQEIRTGPKRSGFRVIALDTGEIGR
Sbjct: 1 MRFFVSGMPGVGKTTLAKRIADEIRREGYKVGGIITQEIRTGPKRSGFRVIALDTGEIGR 60
Query: 61 LAYVGQGYPRVGRYVVDIEGFDRVAIPAISRALRDADIIIIDEIGPMEFKSNEFLKALGL 120
LAYVGQGYPRVGRYVVDIEGFDRVAIPAISRALRDADIIIIDEIGPMEFKSNEFLKALGL
Sbjct: 61 LAYVGQGYPRVGRYVVDIEGFDRVAIPAISRALRDADIIIIDEIGPMEFKSNEFLKALGL 120
Query: 121 VLKSEKPLLATVHRKLVDRYRPLGRYYWLTPENRNEVFAEILMEIRKVLGRNENAGNKA 179
VLKSEKPLLATVHRKLVDRYRPLGRYYWLTPENRNEVFAEILMEIRKVLGRNENAGNKA
Sbjct: 121 VLKSEKPLLATVHRKLVDRYRPLGRYYWLTPENRNEVFAEILMEIRKVLGRNENAGNKA 179
>pir||C71128 hypothetical protein PH0792 - Pyrococcus horikoshii
>gi|3257202|dbj|BAA29885.1| (AP000003) 172aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 172
Score = 296 bits (749), Expect = 1e-79
Identities = 143/169 (84%), Positives = 159/169 (93%)
Query: 1 MRFFVSGMPGVGKTTLAKRIADEIRREGYKVGGIITQEIRTGPKRSGFRVIALDTGEIGR 60
MRFFVSGMPGVGKTTLAKRIADE+RREG+KVGGIIT+EIR G KR+GFRVIALDTGEIGR
Sbjct: 1 MRFFVSGMPGVGKTTLAKRIADEVRREGFKVGGIITEEIREGGKRTGFRVIALDTGEIGR 60
Query: 61 LAYVGQGYPRVGRYVVDIEGFDRVAIPAISRALRDADIIIIDEIGPMEFKSNEFLKALGL 120
LAYVG GYPR+G+YV+D+EGF+RVAIPA+SRALR AD+I+IDEIGPMEFKSNEFLKALGL
Sbjct: 61 LAYVGYGYPRLGKYVIDVEGFERVAIPALSRALRGADLIVIDEIGPMEFKSNEFLKALGL 120
Query: 121 VLKSEKPLLATVHRKLVDRYRPLGRYYWLTPENRNEVFAEILMEIRKVL 169
VLKSEK LLATVHR+LVDRYRPLG YYWLTPENRN VF+EIL I+ +L
Sbjct: 121 VLKSEKHLLATVHRRLVDRYRPLGEYYWLTPENRNAVFSEILGRIKGLL 169
>sp|Q58954|YF59_METJA HYPOTHETICAL PROTEIN MJ1559 >gi|2128936|pir||F64494 conserved
hypothetical protein MJ1559 - Methanococcus jannaschii
>gi|1500452|gb|AAB99578.1| (U67596) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 188
Score = 192 bits (483), Expect = 2e-48
Identities = 96/165 (58%), Positives = 124/165 (74%)
Query: 1 MRFFVSGMPGVGKTTLAKRIADEIRREGYKVGGIITQEIRTGPKRSGFRVIALDTGEIGR 60
MR F++GMPGVGKTTLA +IA++++ GYKVGG IT+EIR G KR GF++I LDT E
Sbjct: 19 MRIFITGMPGVGKTTLALKIAEKLKELGYKVGGFITKEIRDGGKRVGFKIITLDTNEETI 78
Query: 61 LAYVGQGYPRVGRYVVDIEGFDRVAIPAISRALRDADIIIIDEIGPMEFKSNEFLKALGL 120
LAYVG G +VG+Y V IE D V + AI RAL+DADIIIIDE+G MEFKS +F + +
Sbjct: 79 LAYVGDGKIKVGKYAVFIENLDNVGVEAIKRALKDADIIIIDELGAMEFKSRKFSEVVDE 138
Query: 121 VLKSEKPLLATVHRKLVDRYRPLGRYYWLTPENRNEVFAEILMEI 165
V+KS+KPLLAT+HR V++++ G Y LT ENR ++F EIL +I
Sbjct: 139 VIKSDKPLLATLHRNWVNKFKDKGELYTLTIENREKLFEEILNKI 183
>sp|O27140|YA68_METTH HYPOTHETICAL PROTEIN MTH1068 >gi|7429980|pir||G69008 conserved
hypothetical protein MTH1068 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622166|gb|AAB85557.1| (AE000877) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 174
Score = 134 bits (335), Expect = 5e-31
Identities = 72/164 (43%), Positives = 102/164 (61%), Gaps = 2/164 (1%)
Query: 1 MRFFVSGMPGVGKTTLAKRIADEIRREGYKVGGIITQEIRTGPKRSGFRVIALDTGEIGR 60
M+ ++G PG GK+T+ R+ D + G+ VGGIIT E+R G R GF V+ + +G G
Sbjct: 1 MKILITGRPGSGKSTMVGRLRDYLEGMGFSVGGIITPEVRVGGSRWGFEVVDIASGRRGL 60
Query: 61 LAYVGQGYPRVGRYVVDIEGFDRVAIPAISRALRDADIIIIDEIGPMEFKSNEFLKALGL 120
LA V PR+GRY V++ D +A+PAI RA+ + D IIIDEIGPME KS EF + +
Sbjct: 61 LASVETEGPRIGRYGVNVGVMDELAVPAIRRAMLEDDCIIIDEIGPMELKSREFRRTVDE 120
Query: 121 VLKSEKPLLATVHRKLVD--RYRPLGRYYWLTPENRNEVFAEIL 162
VL S+ L+A VHRK + + R R + + PE R+ V+ I+
Sbjct: 121 VLSSDVLLIAAVHRKTLQSIKKREDIRVFVVDPEKRDRVYLRII 164
>gi|11498420 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3183236|sp|O29444|Y814_ARCFU HYPOTHETICAL PROTEIN
AF0814 >gi|7429981|pir||F69351 conserved hypothetical
protein AF0814 - Archaeoglobus fulgidus
>gi|2649795|gb|AAB90428.1| (AE001048) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 165
Score = 113 bits (279), Expect = 2e-24
Identities = 65/165 (39%), Positives = 100/165 (60%), Gaps = 10/165 (6%)
Query: 1 MRFFVSGMPGVGKTTLAKRIADEIRREGYKVGGIITQEIRTGPKRSGFRVIALDTGEIGR 60
M+ V+G PGVGKTTL ++ + ++ + VGG IT+E+R R GF+++ L +G
Sbjct: 1 MKVAVTGRPGVGKTTLCLKVHESLK-DKMTVGGFITKEVRRDGVRVGFKLVDLSSGNEEW 59
Query: 61 LAYVGQGYPRVGRYVVDIEGFDRVAIPAISRALRDADIIIIDEIGPMEFKSNEFLKALGL 120
LA VG+G RVG+Y V++EG + + DAD++IIDE+GPME KS +F++ +
Sbjct: 60 LARVGEGKARVGKYAVNVEGLEEF----LDSVRTDADLVIIDEVGPMELKSRKFVRFVEN 115
Query: 121 VLKSEKPLLATVHRK----LVDRYRPLGRYYWLTPENRNEVFAEI 161
++ E+ LL T+H K L+DR R + Y + NRN + EI
Sbjct: 116 LMGRER-LLFTIHLKSRHRLLDRIRREFKVYVIDESNRNRIAEEI 159
>pir||A72425 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980521|gb|AAD35130.1|AE001691_4 (AE001691)
conserved hypothetical protein [Thermotoga maritima]
Length = 174
Score = 105 bits (259), Expect = 4e-22
Identities = 61/172 (35%), Positives = 102/172 (58%), Gaps = 11/172 (6%)
Query: 1 MRFFVSGMPGVGKTTLAKRIADEIRREGYKVGGIITQEIRTGPKRSGFRVIALDTGEIGR 60
M+ ++G PGVGKTTL K+++ ++ GG T+E+R G KR GF++I LD GE G
Sbjct: 1 MKILITGRPGVGKTTLIKKLSRLLQN----AGGFYTEEMREGEKRIGFKIITLD-GEEGI 55
Query: 61 LAYVGQGYP-RVGRYVVDIEGFDRVAIPAISRALRDADIIIIDEIGPMEFKSNEFLKALG 119
LA P RVG+Y V+++ + + + ++ RA ++ D+II+DEIG ME S +F + +
Sbjct: 56 LARTDLPSPYRVGKYYVNLKDLEEIGVRSLERAFQEKDLIIVDEIGKMELLSRKFREVVE 115
Query: 120 LVLKSEKPLLATVHRK---LVDRYRPLGR--YYWLTPENRNEVFAEILMEIR 166
+ SEK ++AT+ + V++ + + L +NRN + EIL ++
Sbjct: 116 KIFDSEKDVIATIKKSSDPFVEKIKNRNDVVIFELNEKNRNSLLNEILSVLK 167
>pir||G72669 hypothetical protein APE0781 - Aeropyrum pernix (strain K1)
>gi|5104444|dbj|BAA79759.1| (AP000060) 214aa long
hypothetical protein [Aeropyrum pernix]
Length = 214
Score = 105 bits (259), Expect = 4e-22
Identities = 68/186 (36%), Positives = 98/186 (52%), Gaps = 15/186 (8%)
Query: 5 VSGMPGVGKTTLAKRIADEIRREGYKVGGIITQEIRTGPKRSGFRVIALDTGEIGRLAYV 64
V+G PG GK+T R+A+ +R +G ++GG + E+R G +R F+++ + +GE G LA
Sbjct: 30 VTGPPGSGKSTFVSRLAEALRVKGCRLGGFMAPEVRRGGRRVAFKIVDIASGEEGYLAVA 89
Query: 65 GQGYP-------RVGRYVVDIEGFDRVAIPAISRALRDADIIIIDEIGPMEFKSNEFLKA 117
+ R GRY+V ++ RV AI A ADIII+DEIGPME F +A
Sbjct: 90 DESLAAPGGRRARHGRYLVLVDEAWRVMSHAIRNAFEHADIIIVDEIGPMELAVPGFREA 149
Query: 118 LGLVLKSEKPLLATVHRKL------VDRYRPLGRYYWLTPENRNEVFAEILMEIRKVLGR 171
L +L S KPL+ HR+L + + G WL NR + ++ EI L
Sbjct: 150 LTEILDSGKPLVTVFHRRLRTLDPGLYKLLERGCIVWLDERNRGPLI-RLVSEIASALS- 207
Query: 172 NENAGN 177
NE GN
Sbjct: 208 NEACGN 213
>gb|AAK42346.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 175
Score = 103 bits (254), Expect = 2e-21
Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 7/164 (4%)
Query: 1 MRFFVSGMPGVGKTTLAKRIADEIRREGYKVGGIITQEIRTGPKRSGFRVIALDTGEIGR 60
+R F++G PGVGKTT+ + +++ YKV G E+R +R GFR++ + T E
Sbjct: 9 LRVFITGNPGVGKTTILLFLINKLSENNYKVAGFYCPEVRENGRRIGFRIVDITTNEGDW 68
Query: 61 LAYV-GQGYPRVGRYVVDIEGFDRVAIPAISRALRDADIIIIDEIGPMEFKSNEFLKALG 119
LA G ++G+Y V + R+ +S + AD++ IDEIGPME K K +
Sbjct: 69 LAKENAPGRVKIGKYTVLEDSAKRITEITLSN-INKADVLAIDEIGPMELKIPTIKKLIE 127
Query: 120 LVLKSEKPLLATVHRKLVDRYRPL-GRYYWLTPENRNEVFAEIL 162
+L ++KPL+A +HR +P+ GR Y +T ENR+ + EIL
Sbjct: 128 TILNNQKPLIAVLHR----TQKPMGGRIYVITVENRDSIKYEIL 167
>dbj|BAA85416.1| (AP000615) similar to Aquifex aeolicus section 65 of 109 of the
complete genome; hypothetical protein. (AE000733) [Oryza
sativa]
Length = 1413
Score = 81.5 bits (198), Expect = 6e-15
Identities = 51/131 (38%), Positives = 73/131 (54%), Gaps = 10/131 (7%)
Query: 10 GVGKTTLAKRIADEIRREG--YKVGGIITQEIRTGPKRSGFRVIALDTGEIGRLAYVGQG 67
GVGKTTL R+ + +R + G T+E+R +R GF V+ LD G G LA
Sbjct: 156 GVGKTTLVTRVFETLRESHPHLNIRGFYTREVRESGERVGFEVVTLD-GRTGPLASSKVS 214
Query: 68 ------YPRVGRYVVDIEGFDRVAIPAISRALRDADIIIIDEIGPMEFKSNEFLKALGLV 121
+P VGRY VDI + +A+P + + D D+ IIDE+G ME S+ F A+ V
Sbjct: 215 SRESVRWPTVGRYKVDIASLESLALPEL-QVKDDTDLFIIDEVGKMELFSSAFFPAVMRV 273
Query: 122 LKSEKPLLATV 132
++S P+LAT+
Sbjct: 274 IESNIPVLATI 284
>pir||G70411 conserved hypothetical protein aq_1292 - Aquifex aeolicus
>gi|2983732|gb|AAC07294.1| (AE000733) hypothetical
protein [Aquifex aeolicus]
Length = 178
Score = 78.8 bits (191), Expect = 4e-14
Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 17/176 (9%)
Query: 1 MRFFVSGMPGVGKTTLAKRIADEIRREGYKVGGIITQEIR--TGPKRSGFRVIALDTGEI 58
M+ ++G PGVGKTTL K+I + R G + G T+E+R KR+GFR+I + +
Sbjct: 1 MKIIITGEPGVGKTTLVKKI---VERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKK 57
Query: 59 GRLAYVGQGYPRVGRYVVDIEGFDRVAIPAISRALRDA-----DIIIIDEIGPMEFKSNE 113
+ VG Y V+++ F+ +AIP + RA R+A +IIIDEIG ME S +
Sbjct: 58 IFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKK 117
Query: 114 FLKALGLVLKSEK-PLLATVHRKLVD------RYRPLGRYYWLTPENRNEVFAEIL 162
F + ++ ++AT+ + V R P LTPENR+ + +IL
Sbjct: 118 FRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.144 0.414
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65848834
Number of Sequences: 2977
Number of extensions: 2694628
Number of successful extensions: 10369
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 10350
Number of HSP's gapped (non-prelim): 10
length of query: 179
length of database: 189,106,746
effective HSP length: 52
effective length of query: 127
effective length of database: 157,985,422
effective search space: 20064148594
effective search space used: 20064148594
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)