BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1538 (PAB1538) DE:MET-10+ RELATED PROTEIN.
         (278 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75035 met-10+ related protein. PAB1538 - Pyrococcus abyssi...   561  e-159
pir||D71128 hypothetical protein PH0793 - Pyrococcus horikoshii ...   505  e-142
sp|Q58952|YF57_METJA HYPOTHETICAL PROTEIN MJ1557 >gi|2128934|pir...   209  3e-53
gi|11499555 conserved hypothetical protein [Archaeoglobus fulgid...   183  2e-45
pir||C69027 conserved hypothetical protein MTH1200 - Methanobact...   179  4e-44
gb|AAG20549.1| (AE005125) Vng2475c [Halobacterium sp. NRC-1]          151  1e-35
pir||F69117 conserved hypothetical protein MTH1873 - Methanobact...   140  2e-32
pir||D75117 hypothetical protein PAB0505 - Pyrococcus abyssi (st...   138  1e-31
emb|CAC12055.1| (AL445065) conserved hypothetical protein [Therm...   131  1e-29
gb|AAD48952.1|AF149414_1 (AF149414) contains similarity to Pfam ...   127  1e-28
gi|8923676 hypothetical protein FLJ20772 [Homo sapiens] >gi|7021...   127  1e-28
gb|AAF19556.1|AC005761_4 (AC005761) L952.4 [Leishmania major] >g...   125  4e-28
sp|Q58293|Y883_METJA HYPOTHETICAL PROTEIN MJ0883 >gi|2128555|pir...   124  1e-27
pir||B71015 hypothetical protein PH1416 - Pyrococcus horikoshii ...   124  1e-27
gb|AAG19508.1| (AE005042) Vng1117c [Halobacterium sp. NRC-1]          115  6e-25
gi|11498311 conserved hypothetical protein [Archaeoglobus fulgid...   104  1e-21
pir||A71232 hypothetical protein PH0115 - Pyrococcus horikoshii ...   101  1e-20
pir||A72674 hypothetical protein APE0815 - Aeropyrum pernix (str...    91  1e-17
pir||T20173 hypothetical protein C53A5.2 - Caenorhabditis elegan...    88  1e-16
pir||T47729 hypothetical protein F18O21.80 - Arabidopsis thalian...    87  2e-16
pir||F75198 hypothetical protein PAB2272 - Pyrococcus abyssi (st...    85  9e-16
emb|CAC11965.1| (AL445065) conserved hypothetical protein [Therm...    85  1e-15
pir||T22045 hypothetical protein F40F9.10 - Caenorhabditis elega...    84  2e-15
dbj|BAA92631.1| (AB037814) KIAA1393 protein [Homo sapiens]             83  4e-15
gb|AAF47727.1| (AE003477) CG12032 gene product [Drosophila melan...    83  4e-15
gb|AAK42582.1| Conserved hypothetical protein [Sulfolobus solfat...    81  1e-14
gi|6321861 Yhr070wp [Saccharomyces cerevisiae] >gi|731672|sp|P38...    76  6e-13
pir||JC4255 met-10+ protein - Neurospora crassa >gi|773387|gb|AA...    74  2e-12

>pir||D75035 met-10+ related protein. PAB1538 - Pyrococcus abyssi (strain Orsay)
           >gi|5458690|emb|CAB50177.1| (AJ248287) MET-10+ RELATED
           PROTEIN. [Pyrococcus abyssi]
           Length = 278
           
 Score =  561 bits (1431), Expect = e-159
 Identities = 278/278 (100%), Positives = 278/278 (100%)

Query: 1   MRTQVIKPRIREILSRELPPDLLALLPKRWVKLGDILLLPLRPELEPYKYRIAEVYAKVL 60
           MRTQVIKPRIREILSRELPPDLLALLPKRWVKLGDILLLPLRPELEPYKYRIAEVYAKVL
Sbjct: 1   MRTQVIKPRIREILSRELPPDLLALLPKRWVKLGDILLLPLRPELEPYKYRIAEVYAKVL 60

Query: 61  GVKTVLRKGHIYGETRKPDYEILYGNDTITVHVENGIKYKLDVAKIMFSPANVKERVRMA 120
           GVKTVLRKGHIYGETRKPDYEILYGNDTITVHVENGIKYKLDVAKIMFSPANVKERVRMA
Sbjct: 61  GVKTVLRKGHIYGETRKPDYEILYGNDTITVHVENGIKYKLDVAKIMFSPANVKERVRMA 120

Query: 121 KVAKPNELVVDMFAGIGHLSLPIAVYGKARVIAIEKDPYTFKFLLENIQLNKVQDRMSAY 180
           KVAKPNELVVDMFAGIGHLSLPIAVYGKARVIAIEKDPYTFKFLLENIQLNKVQDRMSAY
Sbjct: 121 KVAKPNELVVDMFAGIGHLSLPIAVYGKARVIAIEKDPYTFKFLLENIQLNKVQDRMSAY 180

Query: 181 NMDNRDFPGENIADRILMGYVVKTAEFIPKALSIAKDEAIIHYHNTVPEKLMPEEPFATF 240
           NMDNRDFPGENIADRILMGYVVKTAEFIPKALSIAKDEAIIHYHNTVPEKLMPEEPFATF
Sbjct: 181 NMDNRDFPGENIADRILMGYVVKTAEFIPKALSIAKDEAIIHYHNTVPEKLMPEEPFATF 240

Query: 241 KKIAREHGYEAEKINELRIKRYAPGVWHVVVDIKVFKK 278
           KKIAREHGYEAEKINELRIKRYAPGVWHVVVDIKVFKK
Sbjct: 241 KKIAREHGYEAEKINELRIKRYAPGVWHVVVDIKVFKK 278


>pir||D71128 hypothetical protein PH0793 - Pyrococcus horikoshii
           >gi|3257203|dbj|BAA29886.1| (AP000003) 278aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 278
           
 Score =  505 bits (1287), Expect = e-142
 Identities = 241/277 (87%), Positives = 267/277 (96%)

Query: 1   MRTQVIKPRIREILSRELPPDLLALLPKRWVKLGDILLLPLRPELEPYKYRIAEVYAKVL 60
           MRTQ IKPRIREILS+ELP +L+ LLPKRWV++GD+LLLPLRPELEPYK+RIAEVYA+VL
Sbjct: 1   MRTQGIKPRIREILSKELPEELVKLLPKRWVRIGDVLLLPLRPELEPYKHRIAEVYAEVL 60

Query: 61  GVKTVLRKGHIYGETRKPDYEILYGNDTITVHVENGIKYKLDVAKIMFSPANVKERVRMA 120
           GVKTVLRKGHI+GETRKPDYE+LYG+DT+TVHVENGIKYKLDVAKIMFSPANVKERVRMA
Sbjct: 61  GVKTVLRKGHIHGETRKPDYELLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMA 120

Query: 121 KVAKPNELVVDMFAGIGHLSLPIAVYGKARVIAIEKDPYTFKFLLENIQLNKVQDRMSAY 180
           KVAKP+ELVVDMFAGIGHLSLPIAVYGKA+VIAIEKDPYTFKFL+ENI LNKV+DRMSAY
Sbjct: 121 KVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY 180

Query: 181 NMDNRDFPGENIADRILMGYVVKTAEFIPKALSIAKDEAIIHYHNTVPEKLMPEEPFATF 240
           NMDNRDFPGENIADRILMGYVV+T EFIPKALSIAKD AIIHYHNTVPEKLMP EPF TF
Sbjct: 181 NMDNRDFPGENIADRILMGYVVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETF 240

Query: 241 KKIAREHGYEAEKINELRIKRYAPGVWHVVVDIKVFK 277
           K+I +E+GY+ EK+NEL+IKRYAPGVWHVV+D++VFK
Sbjct: 241 KRITKEYGYDVEKLNELKIKRYAPGVWHVVLDLRVFK 277


>sp|Q58952|YF57_METJA HYPOTHETICAL PROTEIN MJ1557 >gi|2128934|pir||D64494 conserved
           hypothetical protein MJ1557 - Methanococcus jannaschii
           >gi|1500450|gb|AAB99577.1| (U67596) met-10+ related
           protein [Methanococcus jannaschii]
           Length = 249
           
 Score =  209 bits (526), Expect = 3e-53
 Identities = 109/247 (44%), Positives = 159/247 (64%), Gaps = 6/247 (2%)

Query: 29  RWVKLGDILLLPLRPELEPYKYRIAEVYAKVLGVKTVLRKGHIYGETRKPDYEILYGNDT 88
           ++ K+GD++++    + E  +  I E+  +      +L    I GE R P  +ILYG +T
Sbjct: 4   KYQKIGDVVIV----KKELSEDEIREIVKRTKCKAILLYTTQITGEFRTPHVKILYGKET 59

Query: 89  ITVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPNELVVDMFAGIGHLSLPIAVYGK 148
            T+H E G  +KLDVAKIM+S  N++ER RMA ++  NE+VVDMFAGIG+ ++P+A Y K
Sbjct: 60  ETIHKEYGCLFKLDVAKIMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSK 119

Query: 149 ARVI-AIEKDPYTFKFLLENIQLNKVQDRMSAYNMDNRDFPGENIADRILMGYVVKTAEF 207
            +++ AIEK+P  + +L ENI+LNK+ + +     DNRD   +++ADR++MGYV KT +F
Sbjct: 120 PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPIL-ADNRDVELKDVADRVIMGYVHKTHKF 178

Query: 208 IPKALSIAKDEAIIHYHNTVPEKLMPEEPFATFKKIAREHGYEAEKINELRIKRYAPGVW 267
           + K     KD  +IHYH TV EK+M E P    K  A ++GY+       +IK+YAPGVW
Sbjct: 179 LDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLIDYEVRKIKKYAPGVW 238

Query: 268 HVVVDIK 274
           HVVVD K
Sbjct: 239 HVVVDAK 245


>gi|11499555 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7450736|pir||D69496 conserved hypothetical protein
           AF1973 - Archaeoglobus fulgidus
           >gi|2648568|gb|AAB89282.1| (AE000967) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 336
           
 Score =  183 bits (459), Expect = 2e-45
 Identities = 100/271 (36%), Positives = 165/271 (59%), Gaps = 7/271 (2%)

Query: 7   KPRIREILSRELPPDLLALLPKRWVKLGDILLLPLRPELEPYKYRIAEVYAKVLGVKTVL 66
           K  +REIL  ++P +L+   P  +  +GDI+++ L      Y   I E   ++   K V 
Sbjct: 72  KRSLREILRGKVPEELI---PTNYKVIGDIVVVKLDERAREYAKVIGEALMQINPCKAVW 128

Query: 67  RKGHIYGETRKPDYEILYGNDTITVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPN 126
                YG  RKP  E++ G  ++T H ENG ++++DVAK+MFS  N  ER+R+A++ +  
Sbjct: 129 CDYGRYGMKRKPRMELIAGEGSVTEHRENGCRFRIDVAKVMFSLGNQAERMRIARLVEDG 188

Query: 127 ELVVDMFAGIGHLSLPIAVYGKA-RVIAIEKDPYTFKFLLENIQLNKVQDRMSAYNMDNR 185
           E+VVDMFAGIG+ S+PIAV+ KA R+ +IE +P ++K LLENI+LN V + +     D++
Sbjct: 189 EVVVDMFAGIGYFSIPIAVHSKARRIYSIEINPESYKLLLENIKLNDVGNIVPILG-DSQ 247

Query: 186 DFPGENIADRILMGYVVKTAEFIPKALSIAKDEAIIHYHNTVPEKLMPEEPFATFKKIAR 245
               E +ADR++MG++    +++  A+   K+  ++HYH   PE ++ + P    +K  R
Sbjct: 248 FVTPEGVADRVVMGHIY-CHDYLHTAIRALKERGVVHYHEATPEAVI-DRPVRRVEKACR 305

Query: 246 EHGYEAEKINELRIKRYAPGVWHVVVDIKVF 276
           + G +   +   ++K Y+PGV+HVVVD +V+
Sbjct: 306 KMGKKCRILGFKKVKNYSPGVYHVVVDAEVY 336


>pir||C69027 conserved hypothetical protein MTH1200 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622309|gb|AAB85689.1| (AE000888) met-10+ related
           protein [Methanobacterium thermoautotrophicum]
           Length = 244
           
 Score =  179 bits (449), Expect = 4e-44
 Identities = 91/248 (36%), Positives = 151/248 (60%), Gaps = 10/248 (4%)

Query: 29  RWVKLGDILLLPLRPELEPYKYRIAEVYAKVLGVKTVLRKGHIYGETRKPDYEILYGNDT 88
           +W ++GDI++L    + +P      E   ++ GV++V+R   I+G  R+P   +L G+ T
Sbjct: 5   KWARIGDIIVLNREAD-DP------EALLEMEGVRSVIRVEGIHGPLRRPRVRVLAGSGT 57

Query: 89  ITVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPNELVVDMFAGIGHLSLPIAVYG- 147
            TVH ENG  +++D++++M+S  N+ ER R+  + +  E VVDMFAGIG+ S+P+AV+  
Sbjct: 58  ETVHKENGCLFRIDLSRVMWSRGNINERARIPSLVEEGETVVDMFAGIGYFSIPVAVHSD 117

Query: 148 KARVIAIEKDPYTFKFLLENIQLNKVQDRMSAYNMDNRDFPGENIADRILMGYVVKTAEF 207
             RV ++E +P +F+ L  NI LN+V+  +     D R+   E  ADR++MGYV +T  F
Sbjct: 118 PGRVYSVELNPDSFELLKSNITLNRVEGIIEPILGDCREVAPELDADRVIMGYVGRTHHF 177

Query: 208 IPKALSIAKDEAIIHYHNTVPEKLMPEEPFATFKKIAREHGYEAEKINELRIKRYAPGVW 267
           +  A+   +D  +IHYH T PE +    P    ++ A  H      +++  IK+Y+PGVW
Sbjct: 178 LDAAMECVRDGGVIHYHETAPEAIRFSRPLRRIERAA--HPRRVSLLDKRVIKKYSPGVW 235

Query: 268 HVVVDIKV 275
           HVV+D+++
Sbjct: 236 HVVLDVRI 243


>gb|AAG20549.1| (AE005125) Vng2475c [Halobacterium sp. NRC-1]
           Length = 346
           
 Score =  151 bits (377), Expect = 1e-35
 Identities = 99/267 (37%), Positives = 141/267 (52%), Gaps = 26/267 (9%)

Query: 27  PKRWVKLGDILLLPLRPELEPYKYRIAEVYAKVLGVK----TVLRKGH-IYGETRKPDYE 81
           P  W  LG ++L        P      EV A +L +     TVL +G  + GE R PD  
Sbjct: 87  PSSWAVLGSVILADFTDCPRP-----GEVGAALLELHREADTVLDRGDGVAGEHRTPDVS 141

Query: 82  ILYGN-DTITVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPNELVVDMFAGIGHLS 140
           ++ G+ DT TVHVE+G +Y LD+A +MFSP N  ER RM     P E V+DMFAG+G+ +
Sbjct: 142 VVAGDGDTETVHVEHGTRYALDLAAVMFSPGNKAERARMGDATGPGERVLDMFAGVGYFA 201

Query: 141 LPIAVYGKARVIAIEKDPYTFKFLLENIQLNKVQDRMSAYNMDNRDFPGENIADRILMGY 200
           LP+A  G A V A+EK+P  F+FL EN QLN V + +     D R+      ADRI+MGY
Sbjct: 202 LPMARAG-ATVTAVEKNPTAFRFLAENAQLNDVAETLDTILGDCREVDAP--ADRIVMGY 258

Query: 201 -----------VVKTAEFIPKALSIAKDEAIIHYHNTVPEKLMPEEPFATFKKIAREHGY 249
                         T  ++  AL       ++H H+ VPE  + E P +  +   +  G 
Sbjct: 259 YDALGGGPVGDAASTPGYLDAALDNLVSGGVLHAHSAVPEAELWERPLSRLRAGCQRAGR 318

Query: 250 EAEKI-NELRIKRYAPGVWHVVVDIKV 275
            A  + +  R+K ++ GV+HVV+D +V
Sbjct: 319 PAPTVLDTRRVKSHSEGVFHVVIDARV 345


>pir||F69117 conserved hypothetical protein MTH1873 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2623010|gb|AAB86339.1| (AE000939) met-10+ protein
           [Methanobacterium thermoautotrophicum]
           Length = 352
           
 Score =  140 bits (349), Expect = 2e-32
 Identities = 84/274 (30%), Positives = 150/274 (54%), Gaps = 10/274 (3%)

Query: 9   RIREILSRELPPDLLALLPKRWVKLGDILLLPLRPELEPYKYRIAEVYAKVLGVKTV-LR 67
           R  +IL  ++P D LA + + +  +GD ++L +  EL+ Y++ I E   +  G K V ++
Sbjct: 69  RFTDILKSKIPEDALASIRRSFDIIGDTVILEIPEELQDYRFIIGEAALEFTGRKAVYMK 128

Query: 68  KGHIYGETRKPDYEILYGND-TITVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPN 126
           +  + G TR  + E++ G+  + T+H E G + K+D+  + FSP    ER  +A   K  
Sbjct: 129 RSGVKGVTRTRELELIAGSALSETIHQEYGSRIKVDIKDVYFSPRLANERETVAAQVKDG 188

Query: 127 ELVVDMFAGIGHLSLPIAVYGKA-RVIAIEKDPYTFKFLLENIQLNKVQDRMSAYNMDNR 185
           E+V+DMFAG G  ++ +A +G+A RV A++ +P   +++ EN +LN  +D + A   D R
Sbjct: 189 EVVLDMFAGAGPFAIAVARHGRASRVYAVDINPAAVRYIEENARLNHAEDVIVAVEGDVR 248

Query: 186 DF--PGENIADRILMGYVVKTAEFIPKALSIAKDEAIIHYHNTVPEKLMPEEPFATFKKI 243
           +F    E  AD I+M       EF+  A+   +D  +IHY+    +    + P    K+ 
Sbjct: 249 EFLRDRECFADHIIMNLPGSACEFLDDAIRALRDGGVIHYYEFARDF---KTPVNRLKEA 305

Query: 244 AREHGYEAEKINELRIKRYAPGVWHVVVDIKVFK 277
           A+   +  + ++  R+K  +PGVWH+ +D ++ K
Sbjct: 306 AKP--FHVDVLDMRRVKSRSPGVWHMGIDARIRK 337


>pir||D75117 hypothetical protein PAB0505 - Pyrococcus abyssi (strain Orsay)
           >gi|5458164|emb|CAB49653.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 330
           
 Score =  138 bits (343), Expect = 1e-31
 Identities = 95/268 (35%), Positives = 148/268 (54%), Gaps = 9/268 (3%)

Query: 11  REILSRELPPDLLALLPKRWVKLGDILLLPLRPELEPYKYRIAEVYAKV-LGVKTVLRKG 69
           REI++  +P +L   LP  +  +G+I ++ +  EL+ Y   I     +V   VK V  KG
Sbjct: 67  REIVN--VPQELRRFLPTSFDIIGNIAIIEIPEELKGYAKEIGRAIVEVHKNVKAVYMKG 124

Query: 70  H-IYGETRKPDYEILYG-NDTITVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPNE 127
             I GE R  +   + G N T T+H ENGI+ KLDVAK+ FSP    ER+R+ K+A+  E
Sbjct: 125 SKIEGEYRTRELIHIAGENITETIHRENGIRLKLDVAKVYFSPRLATERMRVFKMAQEGE 184

Query: 128 LVVDMFAGIGHLSLPIAVYGKARVIAIEKDPYTFKFLLENIQLNKVQDRMSAYNMDNRDF 187
           +V DMFAG+G  S+ +A   +  V A + +P+  K+L ENI+LNKV + +     D+R+ 
Sbjct: 185 VVFDMFAGVGPFSILLAKKAEL-VFACDINPWAIKYLEENIKLNKVNNVVPILG-DSREI 242

Query: 188 PGENIADRILMGYVVKTAEFIPKALSIAKDEAIIHYHNTVPEKLMPEEPFATFKKIAREH 247
             E  ADRI+M       EF+  A+S   D  +IHY+   PE           +++A + 
Sbjct: 243 --EVKADRIIMNLPKYAHEFLEHAISCINDGGVIHYYGFGPEGDPYGWHLERIRELANKF 300

Query: 248 GYEAEKINELRIKRYAPGVWHVVVDIKV 275
           G + E + +  I+ YAP  +++ +D +V
Sbjct: 301 GVKVEVLGKRVIRNYAPRQYNIAIDFRV 328


>emb|CAC12055.1| (AL445065) conserved hypothetical protein [Thermoplasma
           acidophilum]
           Length = 329
           
 Score =  131 bits (326), Expect = 1e-29
 Identities = 88/275 (32%), Positives = 141/275 (51%), Gaps = 10/275 (3%)

Query: 2   RTQVIKPRIREILSRELPPDLLALLPKRWVKLGDILLLPLRPELEPYKYRIAEVYAKVLG 61
           R + IK  ++++LS+E        +P RWV+ G+ L L       P +  + +V  + LG
Sbjct: 63  RQENIKEMMKDLLSKEY--GYHGNVPDRWVRYGNALFLN-----SPIEECVFKVMKRFLG 115

Query: 62  VKTVLRKGHIYGETRKPDYEILYGNDTITVHVENGIKYKLDVAKIMFSPANVKERVRMAK 121
           +++V     I G  R P  E LYG     +H+ENGI++K D  KIMFSP N  ER RM  
Sbjct: 116 IESVYVYHGIAGSERIPVVEFLYGRRGEVIHIENGIRFKFDPEKIMFSPGNTNERTRMRY 175

Query: 122 VAKPNELVVDMFAGIGHLSLPIAVYGK-ARVIAIEKDPYTFKFLLENIQLNKVQDRMSAY 180
           +    E V+DMF+GIG+ +LP+A YG   R+ A + +P    +L EN  +N V++ +   
Sbjct: 176 MTFEGETVLDMFSGIGYFALPVAKYGNPMRIFACDINPDAIHYLKENAVINGVENIVVPI 235

Query: 181 NMDNRDFPGENIADRILMGYVVKTAEFIPKALSIAKDEAIIHYHNTVPEKLMPEEPFATF 240
             D+R    +   D I+MG   K+  F+P AL  +K    I  H+ V ++ +    + + 
Sbjct: 236 LGDSRLSCPKGPFDSIIMGN-FKSLMFLPGALERSKKNTRIILHHLVSQEDLGSYKY-SI 293

Query: 241 KKIAREHGYEAEKINELRIKRYAPGVWHVVVDIKV 275
                  GY     +   +K YAP ++HV   +++
Sbjct: 294 MSYTSSLGYLTAVEDSHIVKSYAPKMFHVSTTLRI 328


>gb|AAD48952.1|AF149414_1 (AF149414) contains similarity to Pfam family PF00145 (C-5
           cytosine-specific DNA methylase); score=10.4. E=0.051,
           N=1 [Arabidopsis thaliana] >gi|7267225|emb|CAB80832.1|
           (AL161501) contains similarity to Pfam family PF00145
           (C-5 cytosine-specific DNA methylase), score=10.4.
           E=0.051, N=1, coded for by A. thaliana cDNA
           T41604~strong similarity to~Contains Prokaryotic
           membrane lipoprotein lipid attachment site AA40-50~con>
           Length = 977
           
 Score =  127 bits (317), Expect = 1e-28
 Identities = 85/256 (33%), Positives = 132/256 (51%), Gaps = 11/256 (4%)

Query: 4   QVIKPRIREILSRE-LPPDLLALLPKRWVKLGDILLLPLRPELEPYKYRIAE----VYAK 58
           Q ++  I  IL ++ LP +LL  LP++W +LGDI+++P     +P    I +      +K
Sbjct: 710 QRMREDITSILKQKGLPEELLDELPQKWERLGDIVVVPATSFKDPTWSSINDEVWCAVSK 769

Query: 59  VLGVKTVLRKGHIYGE-TRKPDYEILYGNDTITVHVENGIKYKLDVAKIMFSPANVKERV 117
            L    + R+G +    TR    EIL G++    H ENGI Y  D  K MFS  N+ E++
Sbjct: 770 SLSANRLARQGRVEPNGTRDSTLEILVGDNGWVNHRENGILYSFDATKCMFSWGNLSEKL 829

Query: 118 RMAKVAKPNELVVDMFAGIGHLSLPIAVYGKARVI-AIEKDPYTFKFLLENIQLNKVQDR 176
           RM  +A  NE+VVD+FAGIG+  LP  V  KA+++ A E +P+  + L  N++ N V +R
Sbjct: 830 RMGNMACENEVVVDLFAGIGYFVLPFLVRAKAKLVYACEWNPHAIEALRRNVEANSVSER 889

Query: 177 MSAYNMDNRDFPGENIADRILMGYVVKT-AEFIPKALSIAKDEAIIHYHNTV---PEKLM 232
                 DNR    + +ADR+ +G +  +   ++    ++  +  I+H H  V    E   
Sbjct: 890 CIILEGDNRITAPKGVADRVNLGLIPSSEGSWVTAIQALRPEGGILHVHGNVKDSDESSW 949

Query: 233 PEEPFATFKKIAREHG 248
            E    T   IAR  G
Sbjct: 950 GEHVTKTLSDIARAEG 965


>gi|8923676 hypothetical protein FLJ20772 [Homo sapiens]
           >gi|7021077|dbj|BAA91374.1| (AK000779) unnamed protein
           product [Homo sapiens]
           Length = 448
           
 Score =  127 bits (316), Expect = 1e-28
 Identities = 83/249 (33%), Positives = 131/249 (52%), Gaps = 22/249 (8%)

Query: 21  DLLALLPKRWVKLGDILLLP-----------LRPELEPYKYRIAEVYAKVLGVKTVLRKG 69
           +L A LP+ W + G++LLL            L PEL        E  A  LGV+ + ++G
Sbjct: 125 ELEADLPRSWQRHGNLLLLSEDCFQAKQWKNLGPELW-------ETVALALGVQRLAKRG 177

Query: 70  HIYGE-TRKPDYEILYGNDTITVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPNEL 128
            +  + TR P   +L G+     HV+NGI+YK DV + MFS  N+ E++R+A ++   E+
Sbjct: 178 RVSPDGTRTPAVTLLLGDHGWVEHVDNGIRYKFDVTQCMFSFGNITEKLRVASLSCAGEV 237

Query: 129 VVDMFAGIGHLSLPIAVY-GKARVIAIEKDPYTFKFLLENIQLNKVQDRMSAYNMDNRDF 187
           +VD++AGIG+ +LP  V+ G A V A E +P+    L  N+++N V DR   +  DNR  
Sbjct: 238 LVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDNRKL 297

Query: 188 PGENIADRILMGYVVKTAEFIPKALSIAKDEA--IIHYHNTVPEKLMPEEPFATFKKIAR 245
              NIADR+++G +  + E  P A  + + +A  I+H H  V              K+ +
Sbjct: 298 KLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGILHIHQNVESSPGKNLQALGVSKVEK 357

Query: 246 EHGYEAEKI 254
           EH    ++I
Sbjct: 358 EHWLYPQQI 366


>gb|AAF19556.1|AC005761_4 (AC005761) L952.4 [Leishmania major]
           >gi|6759105|gb|AAF27942.1|AC005767_3 (AC005767) L952.4
           [Leishmania major] >gi|6778464|gb|AAF28368.1|AC005766_2
           (AC005766) L952.4 [Leishmania major]
           Length = 390
           
 Score =  125 bits (312), Expect = 4e-28
 Identities = 93/311 (29%), Positives = 139/311 (43%), Gaps = 63/311 (20%)

Query: 25  LLPKRWVKLGDILLLPLRP-----ELEPYKYRIAEVYAKVLGVKTVLRKGHIYGETRKPD 79
           L P+++   G ++++ L       EL P     AE +A VL    +L    I GE R+P 
Sbjct: 78  LFPRKFEVHGHVVVIRLNDGTSVEELRPLARFFAESFAPVLVDVVLLDVDGIVGELRRPS 137

Query: 80  YEILYGNDT----------------------------------------------ITVHV 93
            +IL+  DT                                               T HV
Sbjct: 138 LQILFQADTALTEYATSLRRTVQRRWGGARKRGQPSCMTSDAVESTLNRWTASPTFTAHV 197

Query: 94  ENGIKYKLDVAKIMFSPANVKERVRMAKVAKPNELVVDMFAGIGHLSLPIAVYGK-ARVI 152
           ENG+ Y  DV+++MFS  N  ER+    V   +E+VVDMF GIG+ +LP+A++G  A + 
Sbjct: 198 ENGVIYSFDVSRVMFSSGNTTERIHFGTVTAADEVVVDMFCGIGYFTLPLAMHGNVAAIH 257

Query: 153 AIEKDPYTFKFLLENIQLNKVQDRMSAYNMDNRDFPGENI---ADRILMGYVVKTAEFIP 209
           A+EK+P +  F+  N  LNKV   +     DNR+  GE +    DR+LMGY+     F+P
Sbjct: 258 ALEKNPDSIDFVKLNAVLNKVDHLIHPVCGDNREV-GEELLGKCDRVLMGYIPTCKSFLP 316

Query: 210 KALSIAK------DEAIIHYHNTVPEKLMPEEPFATFKKIAREHGYEAEKINELR-IKRY 262
           +A S  K         ++HYH    +    +E     +    E      +I +LR +K Y
Sbjct: 317 RAASFLKRNEAGRSSGVVHYHFLADKLCAAQEALRDVQDELGEEVAAFVRIADLRCVKSY 376

Query: 263 APGVWHVVVDI 273
           AP  +H V D+
Sbjct: 377 APKRFHFVADL 387


>sp|Q58293|Y883_METJA HYPOTHETICAL PROTEIN MJ0883 >gi|2128555|pir||C64410 hypothetical
           protein MJ0883 - Methanococcus jannaschii
           >gi|1499713|gb|AAB98887.1| (U67532) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 336
           
 Score =  124 bits (309), Expect = 1e-27
 Identities = 88/276 (31%), Positives = 152/276 (54%), Gaps = 16/276 (5%)

Query: 7   KPRIREILSRELPPDL-LALLPKRWVKLGDILLLPLRPEL-EPYKYRIAEVYAKVLGVKT 64
           KP  REI+S++   ++   L+   +  +GD+++L +  E+ E  +  I E+  K++  K 
Sbjct: 73  KPSFREIISKKYRKEIDEGLISLSYDVVGDLVILQISDEVDEKIRKEIGELAYKLIPCKG 132

Query: 65  VLR-KGHIYGETRKPDYEILYG-NDTITVHVENGIKYKLDVAKIMFSPANVKERVRMAKV 122
           V R K  + GE R  + E L G N T+T+H ENG +  +D+AK+ FSP    ER R+ K 
Sbjct: 133 VFRRKSEVKGEFRVRELEHLAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIMKK 192

Query: 123 AKPNELVVDMFAGIGHLSLPIAVYGKARVIAIEKDPYTFKFLLENIQLNKVQDRMSAYNM 182
              N++VVDMFAG+G  S  IA     ++ AI+ +P+  + L +NI+LNK++ ++     
Sbjct: 193 VSLNDVVVDMFAGVGPFS--IACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILS 250

Query: 183 DNRDFPGENIADRILMGYVVKTAEFIPKALSIAKDEAIIHYHNTVPEKLMPEEPFATFKK 242
           D R+   +   +R++M       +FI KAL I ++  +IHY+ T+ +    ++    F+K
Sbjct: 251 DVREVDVK--GNRVIMNLPKFAHKFIDKALDIVEEGGVIHYY-TIGKDF--DKAIKLFEK 305

Query: 243 IAREHGYEAEKINELRIKRYAPGVWHVVVDIKVFKK 278
                  + E + +  +K YAP  + + +D K+ KK
Sbjct: 306 KC-----DCEVLEKRIVKSYAPREYILALDFKINKK 336


>pir||B71015 hypothetical protein PH1416 - Pyrococcus horikoshii
           >gi|3257839|dbj|BAA30522.1| (AP000006) 330aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 330
           
 Score =  124 bits (309), Expect = 1e-27
 Identities = 86/262 (32%), Positives = 139/262 (52%), Gaps = 9/262 (3%)

Query: 18  LPPDLLALLPKRWVKLGDILLLPLRPELEPYKYRIAEVYAKV-LGVKTVLRKG-HIYGET 75
           +P +L   LP  +  +G+I ++ +  EL+ Y   I     +V   VK V  KG  + GE 
Sbjct: 72  IPRELRKFLPSSFDIIGNIAIIEIPSELQNYSNEIGGAIIRVHKSVKAVYMKGGSVEGEY 131

Query: 76  RKPDYEILYGND-TITVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPNELVVDMFA 134
           R  +   + G   T T+H ENG++ KLD+ K+ FSP    ER+R+ K+A+  E+V DMFA
Sbjct: 132 RVRNLIHIAGEKITETIHRENGVRLKLDITKVYFSPRLATERMRVFKMAREGEIVFDMFA 191

Query: 135 GIGHLSLPIAVYGKAR-VIAIEKDPYTFKFLLENIQLNKVQDRMSAYNMDNRDFPGENIA 193
           G+G  S+ +A   KAR V A + +P+  K+L ENI+LNKV++ +   +   +       A
Sbjct: 192 GVGPFSILLA--KKARMVFACDINPWAIKYLEENIKLNKVKNIIPILSDVTKVCVK---A 246

Query: 194 DRILMGYVVKTAEFIPKALSIAKDEAIIHYHNTVPEKLMPEEPFATFKKIAREHGYEAEK 253
           DRI+M      + F+  A+    +  IIHY+   PEK           ++A   G + E 
Sbjct: 247 DRIIMNLPKYASRFLEHAMRCVNNGGIIHYYGFGPEKDPYGWHVKRINEVAGRLGVKVEI 306

Query: 254 INELRIKRYAPGVWHVVVDIKV 275
           + +  I+ YAP  +++ +D +V
Sbjct: 307 LGKRIIRNYAPRQYNIAIDFRV 328


>gb|AAG19508.1| (AE005042) Vng1117c [Halobacterium sp. NRC-1]
           Length = 327
           
 Score =  115 bits (285), Expect = 6e-25
 Identities = 80/262 (30%), Positives = 132/262 (49%), Gaps = 5/262 (1%)

Query: 19  PPDLLALLPKRWVKLGDILLLPLRPELEPYKYRIAEVYAKVLGVKTVLRKGHIYGETRKP 78
           P D+L   P  + +LGDI+++        +    A V + +     + R   I GE R  
Sbjct: 69  PADILGFDPS-YARLGDIVIVDEDDSDRAHAIADAVVESDIPVEAVLNRASKIKGEQRVR 127

Query: 79  DYEILYGNDTITVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPNELVVDMFAGIGH 138
           +++++ G+ T TVH E G  + LDVA + FSP    ER R+ +     E V DMFAG+G 
Sbjct: 128 EWDVIAGDSTETVHREYGHAFALDVAAVYFSPRLATERHRVVEQVTAGEHVFDMFAGVGP 187

Query: 139 LSLPIAVYGKARVIAIEKDPYTFKFLLENIQLNKVQDRMSAYNMDNRDFPGE--NIADRI 196
            ++P+A  G ARV+A + +     +L  N   N V DR++    D R+  GE    ADRI
Sbjct: 188 YAVPMASAG-ARVVATDVNETAIDYLQANAARNGVADRVTGVAGDVREVAGEYTGWADRI 246

Query: 197 LMGYVVKTAEFIPKALSIAKDEAIIHYHNTVPEKLMPEEPFATFKKIAREHGYEAEKINE 256
           +M       EF+  A+++A DE  +H+++   E    +   A  +  AR   Y+      
Sbjct: 247 VMNLPHTADEFLETAVALAGDECTLHFYDIQHEDGRFDAGEAAIRAAARP-AYDVTVATR 305

Query: 257 LRIKRYAPGVWHVVVDIKVFKK 278
             ++ YAP  ++VV+D+ + ++
Sbjct: 306 HTVRSYAPHEFNVVLDVSLSRR 327


>gi|11498311 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7450738|pir||H69337 conserved hypothetical protein
           AF0704 - Archaeoglobus fulgidus
           >gi|2649912|gb|AAB90537.1| (AE001056) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 273
           
 Score =  104 bits (257), Expect = 1e-21
 Identities = 78/274 (28%), Positives = 136/274 (49%), Gaps = 12/274 (4%)

Query: 10  IREILSRELPPDLLALLPKRWVKLGDILLLPLRPELEPYKYRIAEVYAKV-LGVKTVLRK 68
           ++E+L   L  + L L+ + +  +GD++++ +  E+  +   I E   K    VKTVLRK
Sbjct: 3   LKELLKDRLSEEELKLVRRSFEIIGDVVIIEIPDEIMHHSRDIVEAILKRHKHVKTVLRK 62

Query: 69  -GHIYGETRKPDYEILYGNDTITVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPNE 127
            G + G  R   YE +YG  T TV  E+G ++ +D  K  +S     ER R+A++    E
Sbjct: 63  VGEVDGVYRVARYEPIYGEKTETVVREHGCRFLVDPTKAYYSVKLSGERERIARLVGEGE 122

Query: 128 LVVDMFAGIGHLSLPIAVYGKAR-VIAIEKDPYTFKFLLENIQLNKVQDRMSAYNMDNRD 186
            V+ MFAG+G   + IA   + R V+ +E +P+  ++  +N++LNKV+  +     D  +
Sbjct: 123 RVLVMFAGVGPYPIVIAKLARPREVVGVELNPHAVEYFRQNVRLNKVEGVVKVIEGDVEE 182

Query: 187 FPGE--NIADRILMGYVVKTAEFIPKALSIAKDEAIIHYH---NTVPEKLMPEEPFATFK 241
              +     DR++M        FI       +    +HY+   +   EK++PE+    F+
Sbjct: 183 VVPQLSGQFDRVVMPAPYSAENFIHLLRGKVRRGGFVHYYTFDSQNEEKILPEKVRRKFE 242

Query: 242 KIAREHGYEAEKINELRIKRYAPGVWHVVVDIKV 275
               + G E E +   R   +AP V   V+D++V
Sbjct: 243 ----DEGLEVEVVKMRRCGNFAPYVNRYVLDLRV 272


>pir||A71232 hypothetical protein PH0115 - Pyrococcus horikoshii
           >gi|3256501|dbj|BAA29184.1| (AP000001) 296aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 296
           
 Score =  101 bits (248), Expect = 1e-20
 Identities = 79/272 (29%), Positives = 143/272 (52%), Gaps = 17/272 (6%)

Query: 16  RELPPDLLALLPKRWVK-------LGDILLLPLRPELEPYKYRIAEVYAKVLG-VKTVLR 67
           R++  +L  LLPK  V+       +GDI ++ +  EL P K  I E   K+   +K + R
Sbjct: 29  RQIYRNLEDLLPKDVVEKVGRLDIVGDIAIISIPDELMPRKGVIVEAIRKLYPKIKVIAR 88

Query: 68  KGHIYGETRKPDYEILYGNDTI-TVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPN 126
           +G   G  R    E+++G + + T+H ENG+  K+D++K+ F+P    ER R+A++ K  
Sbjct: 89  RGFHTGVYRVRRLEVIWGENRLQTIHKENGVLLKIDLSKVFFNPRMKGERYRLAQLIKDG 148

Query: 127 ELVVDMFAGIGHLSLPIAVYGKARVIAIEKDPYTFKFLLENIQLN--KVQDRMSAYNMDN 184
           E ++  FAG+   +L IA + K  ++A+E +    K   EN+ LN  K++ ++S  + D 
Sbjct: 149 ERILIPFAGVLPYALVIARFRKVDIVAVELNDEAVKLAQENVLLNKDKLKGKISIIHGDV 208

Query: 185 RD-FPGENIADRILMGYVVKTAEFIPKALSIAKDEAIIHYHNTVPEKLMPEEPFATFKKI 243
            D  P     DR++     K  + +  AL+++K +  +HY++ + E  + E      K+ 
Sbjct: 209 FDVLPKLPSFDRVI-SPTPKGVDAL--ALTLSKAKRFLHYYDFIHEDKLGEFKEKIIKE- 264

Query: 244 AREHGYEAEKINELRIKRYAPGVWHVVVDIKV 275
            ++ G E  K+   ++  Y P V+ V  DI++
Sbjct: 265 CQKQGKEC-KVKVRKVADYKPHVYKVCADIEI 295


>pir||A72674 hypothetical protein APE0815 - Aeropyrum pernix (strain K1)
           >gi|5104478|dbj|BAA79793.1| (AP000060) 341aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 341
           
 Score = 91.3 bits (223), Expect = 1e-17
 Identities = 76/280 (27%), Positives = 140/280 (49%), Gaps = 14/280 (5%)

Query: 10  IREILSRELPPDLLALLPKRWVKLGDILLL--PLRP--ELEPYKYRIAEVYAKVLGVKTV 65
           ++EI    L  D  ALL KR   +GDI ++  P+     +E  +    E+  ++  V++V
Sbjct: 58  LKEIAEEVLGRDKAALLWKRIDIIGDIAVIKKPIHGGVSIEDLRLVAGELLRRLPHVRSV 117

Query: 66  -LRKGHIYG--ETRKPDYEILYGNDTITVHVENGIKYKLDVAKIMFSPANVKERVRMAKV 122
            L  G + G  + R+    +     T TV+ E+G ++ +D++K+  +P    E +R+A++
Sbjct: 118 WLATGPVGGLFKVRRDLLHLAGEKRTSTVYREHGAEFLVDISKVFITPRLSFEHLRVARL 177

Query: 123 AKPNELVVDMFAGIGHLSLPIAVYGK-ARVIAIEKDPYTFKFLLENIQLNKVQDRMSAYN 181
            KP E VV+MFAG+G  S+ IA+  + ++V +I+ +P  ++ ++ENI+LN+V+D +    
Sbjct: 178 VKPGETVVNMFAGVGVFSIIIALKSRPSKVYSIDINPDAYRLMIENIRLNRVEDVVEPML 237

Query: 182 MDNRDFPGEN---IADRILMGYVVKTAEFIPKALSIAKDEAIIHYHNTVPEKLMPEEPFA 238
            D+     E+   +ADR+LM       ++I  AL   +    +H +  V  +        
Sbjct: 238 GDSARIVSESLRGVADRVLMPLPDLALDYIGHALDALRGRGWLHVYLHVDYERGKGHLRR 297

Query: 239 TFKKIARE---HGYEAEKINELRIKRYAPGVWHVVVDIKV 275
             K +  E    G+   +     ++   P +  VVVD  V
Sbjct: 298 ACKLVEAEVERRGWRVVEAKARVVRSVGPKLLQVVVDAVV 337


>pir||T20173 hypothetical protein C53A5.2 - Caenorhabditis elegans
           >gi|3875209|emb|CAB03994.1| (Z81486) Similarity to
           Neurospora met-10+ protein (TR:Q01392)~cDNA EST
           EMBL:T00910 comes from this gene [Caenorhabditis
           elegans] >gi|3878789|emb|CAB01437.1| (Z78015) Similarity
           to Neurospora met-10+ protein (TR:Q01392)~cDNA EST
           EMBL:T00910 comes from this gene [Caenorhabditis
           elegans]
           Length = 1150
           
 Score = 88.2 bits (215), Expect = 1e-16
 Identities = 65/194 (33%), Positives = 104/194 (53%), Gaps = 10/194 (5%)

Query: 30  WVKLGDILLLPLRPELEPYKYRIAEVYA-KVLGVKTVLRKGHIYGET-RKPDYEILYGND 87
           + + G I+      E+ P+++ IAEV   KV   KTV++KG+I     R  D E+L G D
Sbjct: 572 YTQTGHIIHCNFADEILPFRFIIAEVLLDKVNNCKTVVQKGNIITNVYRNLDLELLAGED 631

Query: 88  TITVHV-ENGIKYKLDVAKIMFSPANVKERVRMAKVAKPNELVVDMFAGIGHLSLPIAVY 146
                V E G+++K+D +K+ ++     E  R++ +     LV D   GIG   LP  + 
Sbjct: 632 NYVTEVKETGLRFKMDFSKVYWNSRLSHEHERVSGMFNTQSLVYDACCGIGPFVLPATLK 691

Query: 147 GK-ARVIAIEKDPYTFKFLLENIQLNKV-QDRMSAYNMDNRDFPGENIADRI--LMGYVV 202
            K  RV+A + +P + K+L  N+ LNK+ ++R+  +NMD + F  EN+AD +  LM    
Sbjct: 692 RKPKRVVANDLNPESVKWLKVNVGLNKIKEERIEIHNMDAKMFIKENVADDVVRLMLEES 751

Query: 203 KTAEF---IPKALS 213
              EF   +PK +S
Sbjct: 752 TAGEFENEVPKPMS 765


>pir||T47729 hypothetical protein F18O21.80 - Arabidopsis thaliana
           >gi|7572910|emb|CAB87411.1| (AL163763) putative protein
           [Arabidopsis thaliana]
           Length = 447
           
 Score = 87.4 bits (213), Expect = 2e-16
 Identities = 63/183 (34%), Positives = 99/183 (53%), Gaps = 6/183 (3%)

Query: 9   RIREILSRELPPDLLALLPKRWVKLGDILLLPLRPELEPYKYRIAEV-YAKVLG-VKTVL 66
           +++++   E+ P  + L    W   G I  L L  EL P+K  IA+V Y K    +KT++
Sbjct: 76  QLKKLSELEVVPHSVTLGYSYW-SAGHIAHLNLHDELLPFKDVIAKVIYDKNYPRIKTIV 134

Query: 67  RK-GHIYGETRKPDYEILYGNDTITVHVEN-GIKYKLDVAKIMFSPANVKERVRMAKVAK 124
            K G I  E R P +E+L G + +   V+  G ++KLD   + ++     E +R++ + K
Sbjct: 135 NKVGTISNEFRVPKFEVLAGENGMETEVKQYGARFKLDYGLVYWNSRLEHEHMRLSSLFK 194

Query: 125 PNELVVDMFAGIGHLSLPIAVYGKARVIAIEKDPYTFKFLLENIQLNKVQDRMSAYNMDN 184
           P E V DMFAGIG  ++P A  G   V A + +P + ++L  N + NKV D +  +NMD 
Sbjct: 195 PGETVCDMFAGIGPFAIPAAQKG-CFVYANDLNPDSVRYLKINAKFNKVDDLICVHNMDA 253

Query: 185 RDF 187
           R F
Sbjct: 254 RKF 256


>pir||F75198 hypothetical protein PAB2272 - Pyrococcus abyssi (strain Orsay)
           >gi|5457546|emb|CAB49037.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 333
           
 Score = 85.0 bits (207), Expect = 9e-16
 Identities = 70/273 (25%), Positives = 137/273 (49%), Gaps = 19/273 (6%)

Query: 16  RELPPDLLALLPKRWVK-------LGDILLLPLRPELEPYKYRIAEVYAKVLG-VKTVLR 67
           R++  +L  LLP+   K       +GDI ++ +  E+   +  I     K+   VK + R
Sbjct: 65  RQIYKNLEDLLPREIFKKLGRLDIVGDIAIVSIPDEILSEREVIVSAIRKLYPKVKVIAR 124

Query: 68  KGHIYGETRKPDYEILYGNDTI-TVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPN 126
           +G   G  R  + E+++G + + T+H ENG+  K+D++K+ F+P    ER R+A++    
Sbjct: 125 RGFHSGLYRIRELEVIWGENRLHTIHKENGVLIKVDLSKVFFNPRMKGERYRIAQLVNDG 184

Query: 127 ELVVDMFAGIGHLSLPIAVYGKARVIAIEKDPYTFKFLLENIQLN--KVQDRMSAYNMDN 184
           E ++  FAG+    L IA +    V A+E + +  K   EN++LN  +++ ++   + D 
Sbjct: 185 ERILVPFAGVIPYPLVIARFKNVEVYAVEINEFAVKLAEENLELNRDRLKGKIKIIHGDV 244

Query: 185 RD-FPGENIADRILMGYVVKTAEFIPK-ALSIAKDEAIIHYHNTVPEKLMPEEPFATFKK 242
            +  P     DR+    V  T + +   +L+++K E  +HY++ V E  +        ++
Sbjct: 245 FEVLPNLPNFDRV----VSPTPKGVDALSLTLSKAEKFLHYYDFVHESEIERFRERVLEE 300

Query: 243 IAREHGYEAEKINELRIKRYAPGVWHVVVDIKV 275
             R  G E  +++  ++  Y P V+ V  D+++
Sbjct: 301 -CRRQGKEC-RVSVRKVSDYKPHVYKVCADVEI 331


>emb|CAC11965.1| (AL445065) conserved hypothetical protein [Thermoplasma
           acidophilum]
           Length = 306
           
 Score = 84.7 bits (206), Expect = 1e-15
 Identities = 47/141 (33%), Positives = 79/141 (55%), Gaps = 3/141 (2%)

Query: 86  NDTITVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPNELVVDMFAGIGHLSLPIAV 145
           N+T+T + ENG  + +DVAK  FSP    ER R+       E + DMFAG+G +S+ IA 
Sbjct: 122 NNTVTEYRENGCSFTVDVAKAYFSPRLATERRRIVDQVSDGEFIFDMFAGVGPISIEIAR 181

Query: 146 YGKARVIAIEKDPYTFKFLLENIQLNKVQDRMSAYNMDNRDFPGENI--ADRILMGYVVK 203
           Y + R+IA + +    + L EN++ N ++  +  +  D R    E +  ADR++M +   
Sbjct: 182 YRRVRIIAADINCDAVEMLKENMEKNPLRGIIEPFCEDAR-IAAERVTGADRVIMNHPTA 240

Query: 204 TAEFIPKALSIAKDEAIIHYH 224
           + EFI  A+   ++  +I+Y+
Sbjct: 241 SFEFIDYAVKTLREGGVINYY 261


>pir||T22045 hypothetical protein F40F9.10 - Caenorhabditis elegans
           >gi|3876961|emb|CAA94765.1| (Z70753) Weak similarity
           with yeast proline utilization transactivator (Swiss
           Prot accession number P25502) [Caenorhabditis elegans]
           Length = 502
           
 Score = 84.3 bits (205), Expect = 2e-15
 Identities = 63/230 (27%), Positives = 114/230 (49%), Gaps = 9/230 (3%)

Query: 26  LPKRWVKLGDILLLPLRPELE-PYKYRIAEVYAKVLGVKTVLRKGH--IYGETRKPDYEI 82
           LPK+W K GD+++ P        ++Y   E++A V     V R G   +  E R P  ++
Sbjct: 89  LPKKWEKHGDMIVFPQNTFTHINWRYIGRELWAVVAQSLNVARVGRKRLIDEERTPHVDL 148

Query: 83  LYGNDTITVHV-ENGIKYKLDVAKIMFSPANVKERVRMAKVAKPNELVVDMFAGIGHLSL 141
           L G D    +V E GIK+  D  K +F  +   E  R++K +   + +VDM+A +G+ +L
Sbjct: 149 LLGADAWVDYVDERGIKFCYDATKRVFENSKKAEMKRISKWSCQGQTIVDMYASLGYYTL 208

Query: 142 PIAVYGKAR-VIAIEKDPYTFKFLLENIQLNKVQDRMSAYNMDNRDFPGENIADRILMGY 200
              V  +A+ V+AI+ +    + L+ + Q+N V DR+   + D R    +  ADR+ +G 
Sbjct: 209 TFLVSCEAKQVVAIDWNDEILESLIRSAQVNNVDDRLLVIHGDCRRVCPDQTADRVYLGL 268

Query: 201 VVK-TAEFIPKALSIAKDEAIIHYH---NTVPEKLMPEEPFATFKKIARE 246
           +    A ++    ++  +  I+H +   +   +K  P++     KK+  E
Sbjct: 269 LPSCRAHWLAACKALKPEGGIVHINEILDMTEKKKTPQKTEKVEKKVVAE 318


>dbj|BAA92631.1| (AB037814) KIAA1393 protein [Homo sapiens]
           Length = 500
           
 Score = 82.7 bits (201), Expect = 4e-15
 Identities = 50/159 (31%), Positives = 87/159 (54%), Gaps = 4/159 (2%)

Query: 32  KLGDILLLPLRPELEPYKYRIAEVYA-KVLGVKTVLRK-GHIYGETRKPDYEILYGNDTI 89
           ++G I  L LR    P+K+ I +V   K  G+ + + K  +I    R    E+L G   +
Sbjct: 193 RIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNM 252

Query: 90  TVHV-ENGIKYKLDVAKIMFSPANVKERVRMAKVAKPNELVVDMFAGIGHLSLPIAVYGK 148
              V EN   Y+ D +K+ ++P    E  R+ ++ KP +++ D+FAG+G  ++P+A    
Sbjct: 253 MTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVA-KKN 311

Query: 149 ARVIAIEKDPYTFKFLLENIQLNKVQDRMSAYNMDNRDF 187
             V A + +P + K+LL N +LNKV  ++  +N+D +DF
Sbjct: 312 CTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDF 350


>gb|AAF47727.1| (AE003477) CG12032 gene product [Drosophila melanogaster]
           Length = 537
           
 Score = 82.7 bits (201), Expect = 4e-15
 Identities = 58/189 (30%), Positives = 97/189 (50%), Gaps = 6/189 (3%)

Query: 12  EILSRELPPDLLALLPKRWVKLGDILLLPLRPELEPYKYRIAEVYA-KVLGVKTVLRKGH 70
           EIL   LP +   L    + ++G I  L LR  L PYK  I +V   K+   +TV+ K  
Sbjct: 112 EILKSVLPTEEEGLTS--YSRIGHIAHLNLRDHLLPYKQLIGQVLRDKLPNCRTVVNKAS 169

Query: 71  IYGET-RKPDYEILYGNDTITVHV-ENGIKYKLDVAKIMFSPANVKERVRMAKVAKPNEL 128
               T R    E++ G+    V   ENG+ ++ D +K+ ++P    E  R+ K+ K +++
Sbjct: 170 SIDNTYRNFQLELICGDPDYQVETKENGVPFEFDFSKVYWNPRLSTEHERIVKMLKSDDV 229

Query: 129 VVDMFAGIGHLSLPIAVYGKARVIAIEKDPYTFKFLLENIQLNKVQDRMSAYNMDNRDFP 188
           + D+FAG+G  S+P A   +  V+A + +P +F++L  N + NK    +   N D R F 
Sbjct: 230 LYDVFAGVGPFSIP-AAKKRCHVLANDLNPESFRWLQHNAKRNKCLPNIKMSNKDGRQFI 288

Query: 189 GENIADRIL 197
            E + + +L
Sbjct: 289 VEELREDLL 297


>gb|AAK42582.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 262
           
 Score = 81.1 bits (197), Expect = 1e-14
 Identities = 73/252 (28%), Positives = 121/252 (47%), Gaps = 12/252 (4%)

Query: 28  KRWVKLGDILLL--PLRPELEPYKYRIAEVYAKVLGVKTVL-RKGHIYGETRKPDYEILY 84
           KR   +GDI+++  P   + E       E+ +    VK+V  R   + G  R   Y  L 
Sbjct: 16  KRIEIVGDIVIIGVPFNKKPEDLVEIANEILSTFPYVKSVWGRHRDVNGTYRLSTYVHLA 75

Query: 85  GND-TITVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPNELVVDMFAGIGHLSLPI 143
           G   + TV+ E+  KY LD  K+ FS     E +R+A   K +E++++MF+G G  S+  
Sbjct: 76  GEKRSETVYKEHKCKYFLDFTKVFFSEKLSYEHLRVATQVKRDEIIINMFSGFGPFSILS 135

Query: 144 AVYGKARVI-AIEKDPYTFKFLLENIQLNKVQDRMSAYNMDNRDFPGENIADRILMGYVV 202
           AV G+ +++ +I+ +PY + +++ N++LNK  + +  Y    +       ADRI+     
Sbjct: 136 AVLGRPKIVYSIDLNPYAYYYMMVNVELNKAYEVLPIYGDAFKRIYELEDADRIIAPLPE 195

Query: 203 KTAEFIPKALSIAKDEAIIHYHNTVPEKLMPEEPFATFKKIAREHGYEAEKINELRIKRY 262
              +    AL   K   IIH +  V E    E+P     +IA  + Y       + ++  
Sbjct: 196 LADKAYEVALQKVKKGGIIHLYTEV-ETNKGEDPV----RIAM-NKYRGSYFGRI-VRSV 248

Query: 263 APGVWHVVVDIK 274
            P  +HVVVDIK
Sbjct: 249 NPHKYHVVVDIK 260


>gi|6321861 Yhr070wp [Saccharomyces cerevisiae] >gi|731672|sp|P38793|YHN0_YEAST
           HYPOTHETICAL 56.5 KDA PROTEIN IN DYS1-PCL5 INTERGENIC
           REGION >gi|626628|pir||S46697 hypothetical protein
           YHR070w - yeast (Saccharomyces cerevisiae)
           >gi|487945|gb|AAB68376.1| (U00061) Yhr070wp
           [Saccharomyces cerevisiae]
           Length = 499
           
 Score = 75.7 bits (183), Expect = 6e-13
 Identities = 59/186 (31%), Positives = 96/186 (50%), Gaps = 10/186 (5%)

Query: 9   RIREILSRELPPDLLALLPKRWVKLGDILLLPLRPELEPYKYRIAEVYA-KVLGVKTVLR 67
           +  EIL   LP   L  +P  +   G I  L LR E +P+   I +V   K   ++ V+ 
Sbjct: 157 KAEEILRAVLPEQFLEEVPTGFTITGHIAHLNLRTEFKPFDSLIGQVILDKNNKIECVVD 216

Query: 68  K-GHIYGETRKPDYEILYG-NDTITVHV-ENGIKYKLDVAKIMFSPANVKERVRMAK-VA 123
           K   I  + R    +++ G +D++ V   E+   +K D +K+ ++     E  R+ K   
Sbjct: 217 KVSSIATQFRTFPMKVIAGKSDSLVVEQKESNCTFKFDFSKVYWNSRLHTEHERLVKQYF 276

Query: 124 KPNELVVDMFAGIGHLSLPIAVYGKARVIAIEKD--PYTFKFLLENIQLNKVQDRMSAYN 181
           +P ++V D+FAG+G  ++P    GK  VI +  D  P ++K+L ENI LNKV   + ++N
Sbjct: 277 QPGQVVCDVFAGVGPFAVPA---GKKDVIVLANDLNPESYKYLKENIALNKVAKTVKSFN 333

Query: 182 MDNRDF 187
           MD  DF
Sbjct: 334 MDGADF 339


>pir||JC4255 met-10+ protein - Neurospora crassa >gi|773387|gb|AAC41673.1|
           (L40806) Restriction enzyme inactivation of met-10
           complementation in this region. Sequence similarity to
           S. cerevisiae chromosome VIII cosmid 9205, accession no.
           U10556 CDS residues 22627-24126 [Neurospora crassa]
           >gi|1583208|prf||2120297B met-10 gene [Neurospora
           crassa]
           Length = 475
           
 Score = 73.7 bits (178), Expect = 2e-12
 Identities = 66/213 (30%), Positives = 102/213 (46%), Gaps = 12/213 (5%)

Query: 12  EILSRELPPDLLALLPKRWVKLGDILLLPLRPELEPYKYRIAEVYA-KVLGVKTVLRKGH 70
           +I++  LP +L   +P  +   G +  + LR    PYK  IAEV   K   ++TV+ K  
Sbjct: 139 DIITSILPEELHDDIPSGFNTAGHVAHMNLRERYIPYKKVIAEVILDKTTNIRTVINKVD 198

Query: 71  IYG---ETRKPDYEILYGNDTITVHV-ENGIKYKLDVAKIMFSPANVKERVRMAKVAKPN 126
             G   E R   YE+L G D + V V EN   ++ D +K+ ++     E  R+  + +P 
Sbjct: 199 NVGAESEFRTFQYEVLAGPDDMQVQVTENACSFEFDYSKVYWNSKLEAEHRRLINMFEPG 258

Query: 127 ELVVDMFAGIGHLSLPIAVYGKARVIAIEKDPYTFKFLLENIQLNKVQDRMSAYNMDNRD 186
           E+V D+ AGIG  ++P    G   V A + +P + K++   I  NKV   +     D R 
Sbjct: 259 EVVCDVMAGIGPFAVPAGKKG-VFVWANDMNPESNKYMQVAINRNKVSQYVRPICEDGRT 317

Query: 187 FPGENIADRILMGYVVKTAEFI---PKALSIAK 216
           F   + AD +L  +  K  E +   PK  S AK
Sbjct: 318 FI-HHAADSVLEAH--KNGEHVLIAPKPPSRAK 347


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.141    0.408 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102872474
Number of Sequences: 2977
Number of extensions: 4209183
Number of successful extensions: 9407
Number of sequences better than 1.0e-10: 28
Number of HSP's better than  0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 9340
Number of HSP's gapped (non-prelim): 30
length of query: 278
length of database: 189,106,746
effective HSP length: 54
effective length of query: 224
effective length of database: 156,788,448
effective search space: 35120612352
effective search space used: 35120612352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)