BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1540 (PAB1540) DE:Hypothetical protein
         (105 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75035 hypothetical protein PAB1540 - Pyrococcus abyssi (st...   217  3e-56
pir||F71128 hypothetical protein PH0795 - Pyrococcus horikoshii ...   173  4e-43
sp|Q58300|Y890_METJA HYPOTHETICAL PROTEIN MJ0890 >gi|2128558|pir...    72  2e-12

>pir||B75035 hypothetical protein PAB1540 - Pyrococcus abyssi (strain Orsay)
           >gi|5458688|emb|CAB50175.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 105
           
 Score =  217 bits (547), Expect = 3e-56
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MITDEEIRKVIAPLLLSGAKMLDKHCPKCGSPLFEKDGRVFCPVCEYREKKKREEMKGVE 60
           MITDEEIRKVIAPLLLSGAKMLDKHCPKCGSPLFEKDGRVFCPVCEYREKKKREEMKGVE
Sbjct: 1   MITDEEIRKVIAPLLLSGAKMLDKHCPKCGSPLFEKDGRVFCPVCEYREKKKREEMKGVE 60

Query: 61  EVLMEKFKDLAFSLPKDVNELMQHLDAMEKLLTIIERYRKLEGRG 105
           EVLMEKFKDLAFSLPKDVNELMQHLDAMEKLLTIIERYRKLEGRG
Sbjct: 61  EVLMEKFKDLAFSLPKDVNELMQHLDAMEKLLTIIERYRKLEGRG 105


>pir||F71128 hypothetical protein PH0795 - Pyrococcus horikoshii
           >gi|3257205|dbj|BAA29888.1| (AP000003) 105aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 105
           
 Score =  173 bits (435), Expect = 4e-43
 Identities = 81/104 (77%), Positives = 93/104 (88%)

Query: 1   MITDEEIRKVIAPLLLSGAKMLDKHCPKCGSPLFEKDGRVFCPVCEYREKKKREEMKGVE 60
           MITDEEIRKVIAPLLLSGAKMLDKHCPKCGSPLFEKDGRVFCPVCEYREK+K+E +KGVE
Sbjct: 1   MITDEEIRKVIAPLLLSGAKMLDKHCPKCGSPLFEKDGRVFCPVCEYREKQKKEMVKGVE 60

Query: 61  EVLMEKFKDLAFSLPKDVNELMQHLDAMEKLLTIIERYRKLEGR 104
           E LMEK   LA SLP D++EL +HL  MEK++ ++E+Y+KLEGR
Sbjct: 61  ERLMEKLTQLANSLPDDIDELEKHLRVMEKIIEVLEKYKKLEGR 104


>sp|Q58300|Y890_METJA HYPOTHETICAL PROTEIN MJ0890 >gi|2128558|pir||B64411 hypothetical
           protein MJ0890 - Methanococcus jannaschii
           >gi|1499721|gb|AAB98906.1| (U67533) M. jannaschii
           predicted coding region MJ0890 [Methanococcus
           jannaschii]
           Length = 137
           
 Score = 71.8 bits (173), Expect = 2e-12
 Identities = 39/120 (32%), Positives = 65/120 (53%), Gaps = 22/120 (18%)

Query: 4   DEEIRKVIAPLLLSGAKMLDKHCPKCGSPLFEKDGRVFCPVCE----------------- 46
           +++  KV++  LL GAKML  HC KCG PLFEKDG+++CP+CE                 
Sbjct: 19  NDDAIKVLSNELLKGAKMLSTHCSKCGCPLFEKDGKIYCPICEKLKNKETIEKGENEKEI 78

Query: 47  ----YREKKKREEMKGVEEVLMEKFKDLAFSLPKDVNELMQHLDAMEKLLTIIERYRKLE 102
                R+K +  E+  + +V+M+K   L   L K+ +E+ +  +  E +  +I+  +K+E
Sbjct: 79  KNEIERKKSEINEILDLNKVVMDKINYLVMKL-KEEDEVSRIREIAEAIYVLIKLKKKIE 137


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.141    0.407 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38307309
Number of Sequences: 2977
Number of extensions: 1475381
Number of successful extensions: 6030
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6028
Number of HSP's gapped (non-prelim): 3
length of query: 105
length of database: 189,106,746
effective HSP length: 51
effective length of query: 54
effective length of database: 158,583,909
effective search space: 8563531086
effective search space used: 8563531086
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 159 (66.3 bits)