BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1543 (PAB1543) DE:Hypothetical protein
         (110 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75034 hypothetical protein PAB1543 - Pyrococcus abyssi (st...   226  5e-59
pir||F71129 hypothetical protein PH0803 - Pyrococcus horikoshii ...   200  5e-51
gi|11498274 conserved hypothetical protein [Archaeoglobus fulgid...    77  7e-14
pir||B64455 hypothetical protein MJ1243 - Methanococcus jannasch...    73  1e-12
pir||A69024 conserved hypothetical protein MTH1178 - Methanobact...    68  5e-11

>pir||F75034 hypothetical protein PAB1543 - Pyrococcus abyssi (strain Orsay)
           >gi|5458684|emb|CAB50171.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 110
           
 Score =  226 bits (571), Expect = 5e-59
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MPFGWGRGRGRRRKRRMIGFLPQVRHFYPAIPPVSIRQPPIIMTYEEFEALRLVDYEGLT 60
           MPFGWGRGRGRRRKRRMIGFLPQVRHFYPAIPPVSIRQPPIIMTYEEFEALRLVDYEGLT
Sbjct: 1   MPFGWGRGRGRRRKRRMIGFLPQVRHFYPAIPPVSIRQPPIIMTYEEFEALRLVDYEGLT 60

Query: 61  QEEAGKRMGVSRGTLWRALTSARKKVAQMLVEGRELIILPQGNEVVSDEE 110
           QEEAGKRMGVSRGTLWRALTSARKKVAQMLVEGRELIILPQGNEVVSDEE
Sbjct: 61  QEEAGKRMGVSRGTLWRALTSARKKVAQMLVEGRELIILPQGNEVVSDEE 110


>pir||F71129 hypothetical protein PH0803 - Pyrococcus horikoshii
           >gi|3257213|dbj|BAA29896.1| (AP000003) 110aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 110
           
 Score =  200 bits (503), Expect = 5e-51
 Identities = 96/110 (87%), Positives = 102/110 (92%)

Query: 1   MPFGWGRGRGRRRKRRMIGFLPQVRHFYPAIPPVSIRQPPIIMTYEEFEALRLVDYEGLT 60
           MPFGWGRGRGRRRK RMI F PQVRHFYPAIP V   +PPIIMTYEEFEALRLVDYEGLT
Sbjct: 1   MPFGWGRGRGRRRKMRMIRFPPQVRHFYPAIPSVGPPKPPIIMTYEEFEALRLVDYEGLT 60

Query: 61  QEEAGKRMGVSRGTLWRALTSARKKVAQMLVEGRELIILPQGNEVVSDEE 110
           QEEAG+RMG+SRGT+WRALTSARKKVAQMLVEGRELIILPQGNE+V DE+
Sbjct: 61  QEEAGRRMGISRGTVWRALTSARKKVAQMLVEGRELIILPQGNEIVRDEK 110


>gi|11498274 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7429716|pir||B69333 conserved hypothetical protein
           AF0666 - Archaeoglobus fulgidus
           >gi|2649953|gb|AAB90575.1| (AE001059) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 105
           
 Score = 76.9 bits (186), Expect = 7e-14
 Identities = 43/102 (42%), Positives = 62/102 (60%), Gaps = 5/102 (4%)

Query: 3   FGWGRGRGRRRKRR--MIGFLPQVRHFYPAIPPVSIRQPPIIMTYEEFEALRLVDYEGLT 60
           F W +G+ R RK R   I  LP VR     IP     + P+ +   E EALRLVDYE ++
Sbjct: 2   FRWRKGKCRGRKLRDIYISGLPAVRAM---IPEPGTGKKPVAINLAEAEALRLVDYEEMS 58

Query: 61  QEEAGKRMGVSRGTLWRALTSARKKVAQMLVEGRELIILPQG 102
            ++A  +MGVS+ T+WR + +ARKK+A+ + EGR ++I   G
Sbjct: 59  FDDAAAKMGVSKATVWRLVNAARKKMAKAVFEGRAILITKGG 100


>pir||B64455 hypothetical protein MJ1243 - Methanococcus jannaschii
          >gi|1591876|gb|AAB99248.1| (U67565) conserved
          hypothetical protein [Methanococcus jannaschii]
          Length = 123
          
 Score = 73.0 bits (176), Expect = 1e-12
 Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 3/91 (3%)

Query: 9  RGRRRKRRMIGFLPQVRHFYPAIPPVSIRQ-PPIIMTYEEFEALRLVDYEGLTQEEAGKR 67
          RGR +  R I   P+ R F P    VS+ +   +I++ +E EA+RLVDY   TQEEA K 
Sbjct: 4  RGRPKIPRFISEEPKFRIFKPH--GVSLTEVDKVILSVDELEAIRLVDYLDYTQEEASKL 61

Query: 68 MGVSRGTLWRALTSARKKVAQMLVEGRELII 98
          MG+SR  LW  LT  RKK+A  L+ G+ ++I
Sbjct: 62 MGISRRVLWSLLTEGRKKIADALINGKAIVI 92


>pir||A69024 conserved hypothetical protein MTH1178 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622285|gb|AAB85667.1| (AE000886) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 189
           
 Score = 67.5 bits (162), Expect = 5e-11
 Identities = 41/97 (42%), Positives = 62/97 (63%), Gaps = 6/97 (6%)

Query: 12  RRKRRMIGFLPQVRHFYPAIPPVSIRQPPIIMTYEEFEALRLVDYEGLTQEEAGKRMGVS 71
           RR RR++G  P+V  F P     S  +  + +T +EFEA+RL DY  + Q++A + MG+S
Sbjct: 5   RRFRRILGE-PRVVTFSPE---ASDEETGVEITLDEFEAIRLRDYHDIKQKKAAEIMGIS 60

Query: 72  RGTLWRALTSARKKVAQMLVEGRELIILPQGNEVVSD 108
           + T  R LTSAR K+A  LVEGR +I+  +G + ++D
Sbjct: 61  QPTFHRTLTSARGKIAAALVEGRPIIL--KGGDYITD 95


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.141    0.425 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40577633
Number of Sequences: 2977
Number of extensions: 1415380
Number of successful extensions: 3679
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3674
Number of HSP's gapped (non-prelim): 5
length of query: 110
length of database: 189,106,746
effective HSP length: 49
effective length of query: 61
effective length of database: 159,780,883
effective search space: 9746633863
effective search space used: 9746633863
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 160 (66.7 bits)