BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1544 (PAB1544) DE:Hypothetical protein
         (275 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75034 hypothetical protein PAB1544 - Pyrococcus abyssi (st...   547  e-155
pir||G71129 hypothetical protein PH0804 - Pyrococcus horikoshii ...   359  2e-98
pir||A75074 hypothetical protein PAB0661 - Pyrococcus abyssi (st...   106  4e-22
pir||F71091 hypothetical protein PH0995 - Pyrococcus horikoshii ...   100  3e-20

>pir||E75034 hypothetical protein PAB1544 - Pyrococcus abyssi (strain Orsay)
           >gi|5458683|emb|CAB50170.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 275
           
 Score =  547 bits (1395), Expect = e-155
 Identities = 275/275 (100%), Positives = 275/275 (100%)

Query: 1   MRKVMIFVALLTLFSGLVYGNEVKVVVFPDGYVKVTVEMNVTKDENVSISLPVYEFLNLS 60
           MRKVMIFVALLTLFSGLVYGNEVKVVVFPDGYVKVTVEMNVTKDENVSISLPVYEFLNLS
Sbjct: 1   MRKVMIFVALLTLFSGLVYGNEVKVVVFPDGYVKVTVEMNVTKDENVSISLPVYEFLNLS 60

Query: 61  VTLNGEKIPFILGEENITVYSSNAGLLRVTYITPDLTDKHGKVWKVLLPFNYTKDVTLPE 120
           VTLNGEKIPFILGEENITVYSSNAGLLRVTYITPDLTDKHGKVWKVLLPFNYTKDVTLPE
Sbjct: 61  VTLNGEKIPFILGEENITVYSSNAGLLRVTYITPDLTDKHGKVWKVLLPFNYTKDVTLPE 120

Query: 121 GAVIVGLSGIPLEIRGNSVVMPRGEQYIEYVVPPMFYNNQVKRGFGVQYSLFVVSFILGL 180
           GAVIVGLSGIPLEIRGNSVVMPRGEQYIEYVVPPMFYNNQVKRGFGVQYSLFVVSFILGL
Sbjct: 121 GAVIVGLSGIPLEIRGNSVVMPRGEQYIEYVVPPMFYNNQVKRGFGVQYSLFVVSFILGL 180

Query: 181 VFGLYGGRIKVMLSRGVSLDDLVERYDLNKEEQDVLAYIAEHGGRVRQADIRNDLGIPRT 240
           VFGLYGGRIKVMLSRGVSLDDLVERYDLNKEEQDVLAYIAEHGGRVRQADIRNDLGIPRT
Sbjct: 181 VFGLYGGRIKVMLSRGVSLDDLVERYDLNKEEQDVLAYIAEHGGRVRQADIRNDLGIPRT 240

Query: 241 TTWRILKRLEKMNLIKLEKVNNETYAILKVKIKSR 275
           TTWRILKRLEKMNLIKLEKVNNETYAILKVKIKSR
Sbjct: 241 TTWRILKRLEKMNLIKLEKVNNETYAILKVKIKSR 275


>pir||G71129 hypothetical protein PH0804 - Pyrococcus horikoshii
           >gi|3257214|dbj|BAA29897.1| (AP000003) 275aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 275
           
 Score =  359 bits (911), Expect = 2e-98
 Identities = 178/275 (64%), Positives = 215/275 (77%), Gaps = 3/275 (1%)

Query: 1   MRKVMIFVALLTLFSGLVYGNEVKVVVFPDGYVKVTVEMNVTKDENVSISLPVYEFLNLS 60
           MR++ I + LLTLF+   Y   VK+ VFPDGYVKV+V++NVTK ENVSISLP YEF NLS
Sbjct: 1   MRRI-IALLLLTLFASFAYAENVKLTVFPDGYVKVSVKINVTKGENVSISLPFYEFSNLS 59

Query: 61  VTLNGEKIPFILGEENITVYSSNAGLLRVTYITPDLTDKHGKVWKVLLPFNYTKDVTLPE 120
           VTLNG++IPFILGE  I VYSS  G L VTYITP+LT+KHGK WKV+LPFN TK+V LP 
Sbjct: 60  VTLNGKEIPFILGENKIVVYSSGDGTLEVTYITPELTEKHGKTWKVILPFNDTKEVVLPN 119

Query: 121 GAVIVGLSGIPLEIRGNSVVMPRGEQYIEYVVPPMFYNNQVKRGFGVQYS--LFVVSFIL 178
            AVIVGLSGIP+ IR N+V+MP+GEQYIEY+ P +  ++       +     L + SF L
Sbjct: 120 DAVIVGLSGIPISIRDNAVIMPKGEQYIEYITPHIATSSSTGNNVDLTLEGILTLTSFAL 179

Query: 179 GLVFGLYGGRIKVMLSRGVSLDDLVERYDLNKEEQDVLAYIAEHGGRVRQADIRNDLGIP 238
           GL+ G YG +I+++ SRGV+LDDL  +Y+LNKEEQDVL YI E GGRVRQADIRNDLGIP
Sbjct: 180 GLILGAYGSKIRILFSRGVTLDDLARKYNLNKEEQDVLLYILEQGGRVRQADIRNDLGIP 239

Query: 239 RTTTWRILKRLEKMNLIKLEKVNNETYAILKVKIK 273
           RTTTWRILKRLEK  L++L K+NNET+  L+VKIK
Sbjct: 240 RTTTWRILKRLEKNGLVRLLKINNETHVELRVKIK 274


>pir||A75074 hypothetical protein PAB0661 - Pyrococcus abyssi (strain Orsay)
           >gi|5458406|emb|CAB49894.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 285
           
 Score =  106 bits (261), Expect = 4e-22
 Identities = 72/276 (26%), Positives = 138/276 (49%), Gaps = 10/276 (3%)

Query: 6   IFVALLTLFSGLVYG---NEVKVVVFPDGYVKVTVEMNVTKDENVSISLPVYEFLN--LS 60
           +F  LL   SG V      + ++ V+ D  V V+ E  + +D  V I +P        L 
Sbjct: 9   LFTLLLVGLSGSVSAYIVEKTEIYVWEDNSVTVS-ETIIPEDYEVLIRVPTIGVPKDILV 67

Query: 61  VTLNGEKIPFILGEENITVYSSNAGLLRVTYITPDLTDKHGKVWKVLLPFNYTKDVT-LP 119
           ++  G+ I + +G+  I +   +A  L++ Y   + T + G VW + L +N +  +   P
Sbjct: 68  ISNEGKLIGYTVGDGYIEIEPLDATKLKLIYTVMNYTRREGGVWVLRLAYNDSPVILRFP 127

Query: 120 EGAVIVGLSGIPLEIRGNSVVMPRGEQYIEYVVPPMFYNNQVKRGFGVQYSLFVVSFI-- 177
             A+IV +S +P+    +S+++  G   + Y +              ++  +F++  I  
Sbjct: 128 NDAIIVSVSDLPIMYNSSSLILGPGNVTVYYTLKSALQVEHASHKGKIKL-IFILGIIGV 186

Query: 178 LGLVFGLYGGRIKVMLSRGVSLDDLVERYDLNKEEQDVLAYIAEHGGRVRQADIRNDLGI 237
           + ++  L  G+ K        L  L ++Y+LN +E + + Y+   GG+ +QA++R  L +
Sbjct: 187 MAVILKLRSGKEKKERYSEDELRRLAKKYNLNDDELNAIKYLISVGGKCKQAELRRALNL 246

Query: 238 PRTTTWRILKRLEKMNLIKLEKVNNETYAILKVKIK 273
           P+TT WR+++RLE+M L+KL KV  E +  L + ++
Sbjct: 247 PKTTVWRMVRRLEQMGLVKLYKVGRENWVELTIDMQ 282


>pir||F71091 hypothetical protein PH0995 - Pyrococcus horikoshii
           >gi|3257409|dbj|BAA30092.1| (AP000004) 284aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 284
           
 Score = 99.8 bits (245), Expect = 3e-20
 Identities = 71/291 (24%), Positives = 133/291 (45%), Gaps = 32/291 (10%)

Query: 1   MRKVMIFVALLTLFSGLVYGNEVKVVVFPDGYVKVTVEMNVTKDENVSISLPVYE----- 55
           ++KV + +  LTLF           + F   Y+   + + V +D ++++   +Y      
Sbjct: 5   IKKVGVSIMFLTLF-----------LSFTSAYIVENMTIFVWRDGSITVKEVIYPEDYEV 53

Query: 56  FLNLSVTLNGEKIPFILGEENITVYSSNAGLLR----------VTYITPDLTDKHGKVWK 105
           F+ +      E I  I     +  Y S+   ++          V Y   +   + G +W 
Sbjct: 54  FIKVPTLGKAEDILVISDNRTLLEYESDGSFVKIETLDVRRVTVIYTVKNYVKREGALWT 113

Query: 106 VLLPFNYTK---DVTLPEGAVIVGLSGIPLEIRGNSVVMPRGEQYIEYVVPPMFYNNQVK 162
             L FN T+    V LP  A ++ +S +P+    +++VM  G   I Y    +       
Sbjct: 114 --LKFNVTQAPVKVILPLEASVISISDLPIAYSNDTIVMGPGNVTICYTFKSLLPKKAGI 171

Query: 163 RGFGVQYSLFVVSFILGLVFGLYGGRIKVMLSRGVSLDDLVERYDLNKEEQDVLAYIAEH 222
               +  ++ +V+   G++  L G + +        L  L + Y+LN +E + + Y+ E 
Sbjct: 172 SHRAIAGAIILVAITAGIL-ALKGSKREERKYSEDKLRKLAKEYNLNDDELNAIIYLIEK 230

Query: 223 GGRVRQADIRNDLGIPRTTTWRILKRLEKMNLIKLEKVNNETYAILKVKIK 273
           GG+ RQA++R  L +P+TT WR+++RLE+M L+KL KV  E +  L + ++
Sbjct: 231 GGKCRQAELRKALNLPKTTVWRMIRRLEQMGLVKLYKVGRENWVELAIDMQ 281


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.142    0.404 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102763759
Number of Sequences: 2977
Number of extensions: 4572615
Number of successful extensions: 10964
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10957
Number of HSP's gapped (non-prelim): 4
length of query: 275
length of database: 189,106,746
effective HSP length: 55
effective length of query: 220
effective length of database: 156,189,961
effective search space: 34361791420
effective search space used: 34361791420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)