BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1544 (PAB1544) DE:Hypothetical protein
(275 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75034 hypothetical protein PAB1544 - Pyrococcus abyssi (st... 547 e-155
pir||G71129 hypothetical protein PH0804 - Pyrococcus horikoshii ... 359 2e-98
pir||A75074 hypothetical protein PAB0661 - Pyrococcus abyssi (st... 106 4e-22
pir||F71091 hypothetical protein PH0995 - Pyrococcus horikoshii ... 100 3e-20
>pir||E75034 hypothetical protein PAB1544 - Pyrococcus abyssi (strain Orsay)
>gi|5458683|emb|CAB50170.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 275
Score = 547 bits (1395), Expect = e-155
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MRKVMIFVALLTLFSGLVYGNEVKVVVFPDGYVKVTVEMNVTKDENVSISLPVYEFLNLS 60
MRKVMIFVALLTLFSGLVYGNEVKVVVFPDGYVKVTVEMNVTKDENVSISLPVYEFLNLS
Sbjct: 1 MRKVMIFVALLTLFSGLVYGNEVKVVVFPDGYVKVTVEMNVTKDENVSISLPVYEFLNLS 60
Query: 61 VTLNGEKIPFILGEENITVYSSNAGLLRVTYITPDLTDKHGKVWKVLLPFNYTKDVTLPE 120
VTLNGEKIPFILGEENITVYSSNAGLLRVTYITPDLTDKHGKVWKVLLPFNYTKDVTLPE
Sbjct: 61 VTLNGEKIPFILGEENITVYSSNAGLLRVTYITPDLTDKHGKVWKVLLPFNYTKDVTLPE 120
Query: 121 GAVIVGLSGIPLEIRGNSVVMPRGEQYIEYVVPPMFYNNQVKRGFGVQYSLFVVSFILGL 180
GAVIVGLSGIPLEIRGNSVVMPRGEQYIEYVVPPMFYNNQVKRGFGVQYSLFVVSFILGL
Sbjct: 121 GAVIVGLSGIPLEIRGNSVVMPRGEQYIEYVVPPMFYNNQVKRGFGVQYSLFVVSFILGL 180
Query: 181 VFGLYGGRIKVMLSRGVSLDDLVERYDLNKEEQDVLAYIAEHGGRVRQADIRNDLGIPRT 240
VFGLYGGRIKVMLSRGVSLDDLVERYDLNKEEQDVLAYIAEHGGRVRQADIRNDLGIPRT
Sbjct: 181 VFGLYGGRIKVMLSRGVSLDDLVERYDLNKEEQDVLAYIAEHGGRVRQADIRNDLGIPRT 240
Query: 241 TTWRILKRLEKMNLIKLEKVNNETYAILKVKIKSR 275
TTWRILKRLEKMNLIKLEKVNNETYAILKVKIKSR
Sbjct: 241 TTWRILKRLEKMNLIKLEKVNNETYAILKVKIKSR 275
>pir||G71129 hypothetical protein PH0804 - Pyrococcus horikoshii
>gi|3257214|dbj|BAA29897.1| (AP000003) 275aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 275
Score = 359 bits (911), Expect = 2e-98
Identities = 178/275 (64%), Positives = 215/275 (77%), Gaps = 3/275 (1%)
Query: 1 MRKVMIFVALLTLFSGLVYGNEVKVVVFPDGYVKVTVEMNVTKDENVSISLPVYEFLNLS 60
MR++ I + LLTLF+ Y VK+ VFPDGYVKV+V++NVTK ENVSISLP YEF NLS
Sbjct: 1 MRRI-IALLLLTLFASFAYAENVKLTVFPDGYVKVSVKINVTKGENVSISLPFYEFSNLS 59
Query: 61 VTLNGEKIPFILGEENITVYSSNAGLLRVTYITPDLTDKHGKVWKVLLPFNYTKDVTLPE 120
VTLNG++IPFILGE I VYSS G L VTYITP+LT+KHGK WKV+LPFN TK+V LP
Sbjct: 60 VTLNGKEIPFILGENKIVVYSSGDGTLEVTYITPELTEKHGKTWKVILPFNDTKEVVLPN 119
Query: 121 GAVIVGLSGIPLEIRGNSVVMPRGEQYIEYVVPPMFYNNQVKRGFGVQYS--LFVVSFIL 178
AVIVGLSGIP+ IR N+V+MP+GEQYIEY+ P + ++ + L + SF L
Sbjct: 120 DAVIVGLSGIPISIRDNAVIMPKGEQYIEYITPHIATSSSTGNNVDLTLEGILTLTSFAL 179
Query: 179 GLVFGLYGGRIKVMLSRGVSLDDLVERYDLNKEEQDVLAYIAEHGGRVRQADIRNDLGIP 238
GL+ G YG +I+++ SRGV+LDDL +Y+LNKEEQDVL YI E GGRVRQADIRNDLGIP
Sbjct: 180 GLILGAYGSKIRILFSRGVTLDDLARKYNLNKEEQDVLLYILEQGGRVRQADIRNDLGIP 239
Query: 239 RTTTWRILKRLEKMNLIKLEKVNNETYAILKVKIK 273
RTTTWRILKRLEK L++L K+NNET+ L+VKIK
Sbjct: 240 RTTTWRILKRLEKNGLVRLLKINNETHVELRVKIK 274
>pir||A75074 hypothetical protein PAB0661 - Pyrococcus abyssi (strain Orsay)
>gi|5458406|emb|CAB49894.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 285
Score = 106 bits (261), Expect = 4e-22
Identities = 72/276 (26%), Positives = 138/276 (49%), Gaps = 10/276 (3%)
Query: 6 IFVALLTLFSGLVYG---NEVKVVVFPDGYVKVTVEMNVTKDENVSISLPVYEFLN--LS 60
+F LL SG V + ++ V+ D V V+ E + +D V I +P L
Sbjct: 9 LFTLLLVGLSGSVSAYIVEKTEIYVWEDNSVTVS-ETIIPEDYEVLIRVPTIGVPKDILV 67
Query: 61 VTLNGEKIPFILGEENITVYSSNAGLLRVTYITPDLTDKHGKVWKVLLPFNYTKDVT-LP 119
++ G+ I + +G+ I + +A L++ Y + T + G VW + L +N + + P
Sbjct: 68 ISNEGKLIGYTVGDGYIEIEPLDATKLKLIYTVMNYTRREGGVWVLRLAYNDSPVILRFP 127
Query: 120 EGAVIVGLSGIPLEIRGNSVVMPRGEQYIEYVVPPMFYNNQVKRGFGVQYSLFVVSFI-- 177
A+IV +S +P+ +S+++ G + Y + ++ +F++ I
Sbjct: 128 NDAIIVSVSDLPIMYNSSSLILGPGNVTVYYTLKSALQVEHASHKGKIKL-IFILGIIGV 186
Query: 178 LGLVFGLYGGRIKVMLSRGVSLDDLVERYDLNKEEQDVLAYIAEHGGRVRQADIRNDLGI 237
+ ++ L G+ K L L ++Y+LN +E + + Y+ GG+ +QA++R L +
Sbjct: 187 MAVILKLRSGKEKKERYSEDELRRLAKKYNLNDDELNAIKYLISVGGKCKQAELRRALNL 246
Query: 238 PRTTTWRILKRLEKMNLIKLEKVNNETYAILKVKIK 273
P+TT WR+++RLE+M L+KL KV E + L + ++
Sbjct: 247 PKTTVWRMVRRLEQMGLVKLYKVGRENWVELTIDMQ 282
>pir||F71091 hypothetical protein PH0995 - Pyrococcus horikoshii
>gi|3257409|dbj|BAA30092.1| (AP000004) 284aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 284
Score = 99.8 bits (245), Expect = 3e-20
Identities = 71/291 (24%), Positives = 133/291 (45%), Gaps = 32/291 (10%)
Query: 1 MRKVMIFVALLTLFSGLVYGNEVKVVVFPDGYVKVTVEMNVTKDENVSISLPVYE----- 55
++KV + + LTLF + F Y+ + + V +D ++++ +Y
Sbjct: 5 IKKVGVSIMFLTLF-----------LSFTSAYIVENMTIFVWRDGSITVKEVIYPEDYEV 53
Query: 56 FLNLSVTLNGEKIPFILGEENITVYSSNAGLLR----------VTYITPDLTDKHGKVWK 105
F+ + E I I + Y S+ ++ V Y + + G +W
Sbjct: 54 FIKVPTLGKAEDILVISDNRTLLEYESDGSFVKIETLDVRRVTVIYTVKNYVKREGALWT 113
Query: 106 VLLPFNYTK---DVTLPEGAVIVGLSGIPLEIRGNSVVMPRGEQYIEYVVPPMFYNNQVK 162
L FN T+ V LP A ++ +S +P+ +++VM G I Y +
Sbjct: 114 --LKFNVTQAPVKVILPLEASVISISDLPIAYSNDTIVMGPGNVTICYTFKSLLPKKAGI 171
Query: 163 RGFGVQYSLFVVSFILGLVFGLYGGRIKVMLSRGVSLDDLVERYDLNKEEQDVLAYIAEH 222
+ ++ +V+ G++ L G + + L L + Y+LN +E + + Y+ E
Sbjct: 172 SHRAIAGAIILVAITAGIL-ALKGSKREERKYSEDKLRKLAKEYNLNDDELNAIIYLIEK 230
Query: 223 GGRVRQADIRNDLGIPRTTTWRILKRLEKMNLIKLEKVNNETYAILKVKIK 273
GG+ RQA++R L +P+TT WR+++RLE+M L+KL KV E + L + ++
Sbjct: 231 GGKCRQAELRKALNLPKTTVWRMIRRLEQMGLVKLYKVGRENWVELAIDMQ 281
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.142 0.404
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102763759
Number of Sequences: 2977
Number of extensions: 4572615
Number of successful extensions: 10964
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10957
Number of HSP's gapped (non-prelim): 4
length of query: 275
length of database: 189,106,746
effective HSP length: 55
effective length of query: 220
effective length of database: 156,189,961
effective search space: 34361791420
effective search space used: 34361791420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)