BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1545 (PAB1545) DE:Hypothetical protein
         (135 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75034 hypothetical protein PAB1545 - Pyrococcus abyssi (st...   273  6e-73
pir||H75186 hypothetical protein PAB2340 - Pyrococcus abyssi (st...   115  2e-25
pir||C71157 hypothetical protein PH0458 - Pyrococcus horikoshii ...   103  8e-22

>pir||B75034 hypothetical protein PAB1545 - Pyrococcus abyssi (strain Orsay)
           >gi|5458680|emb|CAB50167.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 135
           
 Score =  273 bits (691), Expect = 6e-73
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MMEFYELPKERKKEIISKLRKALVKKDEVLFAYLHGSFLDDGPFRDIDVAVYVVKTVGRF 60
           MMEFYELPKERKKEIISKLRKALVKKDEVLFAYLHGSFLDDGPFRDIDVAVYVVKTVGRF
Sbjct: 1   MMEFYELPKERKKEIISKLRKALVKKDEVLFAYLHGSFLDDGPFRDIDVAVYVVKTVGRF 60

Query: 61  YEMELEEELSRLVGFPVDVRILNDAPVTFRFRAIGGELLFSKDEKRRCMFEEITMAEYHD 120
           YEMELEEELSRLVGFPVDVRILNDAPVTFRFRAIGGELLFSKDEKRRCMFEEITMAEYHD
Sbjct: 61  YEMELEEELSRLVGFPVDVRILNDAPVTFRFRAIGGELLFSKDEKRRCMFEEITMAEYHD 120

Query: 121 QLYYLELYRREVLGI 135
           QLYYLELYRREVLGI
Sbjct: 121 QLYYLELYRREVLGI 135


>pir||H75186 hypothetical protein PAB2340 - Pyrococcus abyssi (strain Orsay)
           >gi|5457452|emb|CAB48943.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 128
           
 Score =  115 bits (285), Expect = 2e-25
 Identities = 64/125 (51%), Positives = 84/125 (67%), Gaps = 2/125 (1%)

Query: 11  RKKEIISKLRKALVKKDEVLFAYLHGSFLDDGPFRDIDVAVYVVKTVGRF--YEMELEEE 68
           ++ EI  KL+K L K  EV+FAYLHGS L+   FRDIDVAVYV ++V  +  YE+ L  E
Sbjct: 2   KRCEIEEKLKKILEKHREVIFAYLHGSILETDYFRDIDVAVYVDESVKNYLKYEISLAVE 61

Query: 69  LSRLVGFPVDVRILNDAPVTFRFRAIGGELLFSKDEKRRCMFEEITMAEYHDQLYYLELY 128
           L + +   VDVR+LNDAP  FR+RAI G+LL S+DEK+R  F E T+ EY D      + 
Sbjct: 62  LEKEISMEVDVRVLNDAPPAFRYRAIKGKLLVSRDEKKRLNFVERTVEEYLDFEPIERIM 121

Query: 129 RREVL 133
           R+E+L
Sbjct: 122 RKELL 126


>pir||C71157 hypothetical protein PH0458 - Pyrococcus horikoshii
           >gi|3256861|dbj|BAA29544.1| (AP000002) 129aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 129
           
 Score =  103 bits (255), Expect = 8e-22
 Identities = 60/119 (50%), Positives = 77/119 (64%), Gaps = 5/119 (4%)

Query: 14  EIISKLRKALVKKDEVLFAYLHGSFLDDGPFRDIDVAVYVVKTVGRF--YEMELEEELSR 71
           EI  K+RKAL    E++FAYLHGSFL    F DID+AVYV  +V  +  YE+ L  EL R
Sbjct: 2   EIEEKIRKALEGHHEIIFAYLHGSFLVTEGFMDIDIAVYVDDSVRDYLEYELSLAVELER 61

Query: 72  LVGFPVDVRILNDAPVTFRFRAIGGELLFSKDEKRRCMFEEITMAEYHDQLYYLELYRR 130
           ++G  VDVR+LNDAP  FR+RAI G+++  +D + R  F E T+ EY D   Y  L RR
Sbjct: 62  MIGKDVDVRVLNDAPPAFRYRAIKGKVILDRDPEVRLNFIERTVWEYLD---YEPLERR 117


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.146    0.415 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48691077
Number of Sequences: 2977
Number of extensions: 1934172
Number of successful extensions: 5552
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5548
Number of HSP's gapped (non-prelim): 3
length of query: 135
length of database: 189,106,746
effective HSP length: 51
effective length of query: 84
effective length of database: 158,583,909
effective search space: 13321048356
effective search space used: 13321048356
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 161 (67.1 bits)