BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1546 (PAB1546) DE:Hypothetical protein
         (156 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75034 hypothetical protein PAB1546 - Pyrococcus abyssi (st...   313  6e-85
pir||A75187 hypothetical protein PAB2339 - Pyrococcus abyssi (st...   113  1e-24

>pir||A75034 hypothetical protein PAB1546 - Pyrococcus abyssi (strain Orsay)
           >gi|5458679|emb|CAB50166.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 156
           
 Score =  313 bits (794), Expect = 6e-85
 Identities = 156/156 (100%), Positives = 156/156 (100%)

Query: 1   MINYITLNFTGGRFLEYDKERITRLMSEAENALQSLYELGNLDVEEFLKNKHYVSSAKYN 60
           MINYITLNFTGGRFLEYDKERITRLMSEAENALQSLYELGNLDVEEFLKNKHYVSSAKYN
Sbjct: 1   MINYITLNFTGGRFLEYDKERITRLMSEAENALQSLYELGNLDVEEFLKNKHYVSSAKYN 60

Query: 61  LLVAIEACIDIAYHLISKNKLRLPRDYVDSFKVLEENGIIDEQLAHRLILMARFRNRLVH 120
           LLVAIEACIDIAYHLISKNKLRLPRDYVDSFKVLEENGIIDEQLAHRLILMARFRNRLVH
Sbjct: 61  LLVAIEACIDIAYHLISKNKLRLPRDYVDSFKVLEENGIIDEQLAHRLILMARFRNRLVH 120

Query: 121 IYWDIDNRMVYKIITEDIKDIENFLKTLRKNILSQE 156
           IYWDIDNRMVYKIITEDIKDIENFLKTLRKNILSQE
Sbjct: 121 IYWDIDNRMVYKIITEDIKDIENFLKTLRKNILSQE 156


>pir||A75187 hypothetical protein PAB2339 - Pyrococcus abyssi (strain Orsay)
           >gi|5457453|emb|CAB48944.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 140
           
 Score =  113 bits (279), Expect = 1e-24
 Identities = 57/134 (42%), Positives = 84/134 (62%), Gaps = 1/134 (0%)

Query: 15  LEYDKERITRLMSEAENALQSLYELGNLDVEEFLKNKHYVSSAKYNLLVAIEACIDIAYH 74
           +E DK+ I R ++E + A+  L ++G+L +EEFL N H   +AKY L++AI     I  H
Sbjct: 1   MEIDKDLIERRLAEIKGAINELRDIGDLGLEEFLTNSHIRYAAKYLLIMAIGGAFSICNH 60

Query: 75  LISKNKLRLPRDYVDSFKVLEENGIIDEQLAHRLILMARFRNRLVHIYWDIDNRMVYKII 134
           ++ + K  +P  Y D F  L   GII   LA RL  MA+FRN LVH+YW ID+  V++I+
Sbjct: 61  IVVR-KGDIPSSYSDCFLKLSRLGIISGDLAERLAQMAKFRNMLVHVYWRIDDEKVFEIL 119

Query: 135 TEDIKDIENFLKTL 148
            EDI D+E F++ +
Sbjct: 120 REDIVDLEEFIRAV 133


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.141    0.394 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53327700
Number of Sequences: 2977
Number of extensions: 2027440
Number of successful extensions: 5636
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5633
Number of HSP's gapped (non-prelim): 2
length of query: 156
length of database: 189,106,746
effective HSP length: 54
effective length of query: 102
effective length of database: 156,788,448
effective search space: 15992421696
effective search space used: 15992421696
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)