BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1547 (PAB1547) DE:Hypothetical protein
(473 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75033 hypothetical protein PAB1547 - Pyrococcus abyssi (st... 957 0.0
pir||D71135 tldD-related protein PH0848 - Pyrococcus horikoshii ... 894 0.0
pir||D72762 hypothetical protein APE0089 - Aeropyrum pernix (str... 431 e-120
emb|CAC11942.1| (AL445065) conserved hypothetical protein [Therm... 340 2e-92
gb|AAK41402.1| Conserved hypothetical protein [Sulfolobus solfat... 328 8e-89
pir||G71248 tldD homolog PH0246 - Pyrococcus horikoshii >gi|3256... 275 1e-72
pir||A75213 tldd protein PAB0154 - Pyrococcus abyssi (strain Ors... 260 3e-68
sp|Q58403|Y996_METJA HYPOTHETICAL PROTEIN MJ0996 >gi|2826357|gb|... 247 2e-64
pir||D64424 tldD homolog MJ0996 - Methanococcus jannaschii 245 8e-64
pir||E71033 tldD-related protein PH1557 - Pyrococcus horikoshii ... 235 1e-60
pir||C75180 tldd related protein PAB1955 - Pyrococcus abyssi (st... 232 6e-60
sp|O26944|Y856_METTH HYPOTHETICAL PROTEIN MTH856 >gi|7429832|pir... 228 1e-58
pir||D70703 tldD homolog Rv2315c - Mycobacterium tuberculosis (s... 186 5e-46
gi|11498263 conserved hypothetical protein [Archaeoglobus fulgid... 180 3e-44
pir||B83330 hypothetical protein PA2529 [imported] - Pseudomonas... 175 8e-43
pir||D72342 tldD protein - Thermotoga maritima (strain MSB8) >gi... 173 4e-42
gb|AAK40965.1| Zn-dependent protease, tldD protein homolog, puta... 171 1e-41
emb|CAB57642.1| (Y18930) hypothetical protein [Sulfolobus solfat... 171 1e-41
pir||T36780 hypothetical protein SCI28.10 - Streptomyces coelico... 158 1e-37
pir||G70473 tldD homolog - Aquifex aeolicus >gi|2984257|gb|AAC07... 156 6e-37
sp|P57478|TLDD_BUCAI TLDD PROTEIN HOMOLOG >gi|10039067|dbj|BAB13... 150 2e-35
pir||D83086 conserved hypothetical protein PA4474 [imported] - P... 146 6e-34
sp|P45297|TLDD_HAEIN TLDD PROTEIN HOMOLOG 145 1e-33
sp|P73754|Y863_SYNY3 HYPOTHETICAL 50.4 KD PROTEIN SLR0863 >gi|74... 143 5e-33
sp|P46473|TLDD_ECOLI TLDD PROTEIN >gi|7429829|pir||F65116 tldD p... 142 7e-33
pir||G82325 tldD protein VC0422 [imported] - Vibrio cholerae (gr... 139 6e-32
pir||F82718 TldD protein XF1127 [imported] - Xylella fastidiosa ... 138 2e-31
gb|AAC43985.2| (U33883) TldD [Bradyrhizobium japonicum] 132 1e-29
pir||A82033 TLDD protein homolog NMA0367 [imported] - Neisseria ... 119 8e-26
pir||F81010 tldD protein NMB2066 [imported] - Neisseria meningit... 117 3e-25
dbj|BAB05755.1| (AP001514) suppressor of the inhibitory activity... 116 5e-25
sp|P24231|PMBA_ECOLI PMBA PROTEIN (TLDE PROTEIN) >gi|96308|pir||... 111 1e-23
pir||F75033 hypothetical protein PAB1548 - Pyrococcus abyssi (st... 101 3e-20
sp|P74002|YD22_SYNY3 HYPOTHETICAL 53.1 KD PROTEIN SLR1322 >gi|74... 98 3e-19
pir||S70839 tldD homolog - Bradyrhizobium japonicum (fragment) 97 4e-19
pir||E71135 hypothetical protein PH0849 - Pyrococcus horikoshii ... 92 1e-17
pir||E72342 pmbA-related protein - Thermotoga maritima (strain M... 85 2e-15
pir||B83086 PmbA protein PA4472 [imported] - Pseudomonas aerugin... 83 5e-15
pir||H81869 hypothetical protein NMA1048 [imported] - Neisseria ... 78 2e-13
gb|AAF65318.1|AF234655_1 (AF234655) LmbIH [Streptomyces lincolne... 73 9e-12
pir||D82066 pmbA protein VC2535 [imported] - Vibrio cholerae (gr... 73 9e-12
>pir||G75033 hypothetical protein PAB1547 - Pyrococcus abyssi (strain Orsay)
>gi|5458677|emb|CAB50164.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 473
Score = 957 bits (2446), Expect = 0.0
Identities = 473/473 (100%), Positives = 473/473 (100%)
Query: 1 MHDLLEFAVEKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGM 60
MHDLLEFAVEKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGM
Sbjct: 1 MHDLLEFAVEKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGM 60
Query: 61 GFASTNILTKESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPP 120
GFASTNILTKESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPP
Sbjct: 61 GFASTNILTKESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPP 120
Query: 121 EEKLELLKKIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVV 180
EEKLELLKKIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVV
Sbjct: 121 EEKLELLKKIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVV 180
Query: 181 YEEGQMEQAPFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISP 240
YEEGQMEQAPFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISP
Sbjct: 181 YEEGQMEQAPFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISP 240
Query: 241 EVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWG 300
EVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWG
Sbjct: 241 EVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWG 300
Query: 301 FYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTY 360
FYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTY
Sbjct: 301 FYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTY 360
Query: 361 LAPGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPIL 420
LAPGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPIL
Sbjct: 361 LAPGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPIL 420
Query: 421 EITTRGLWSSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHARLRDIPLRRP 473
EITTRGLWSSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHARLRDIPLRRP
Sbjct: 421 EITTRGLWSSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHARLRDIPLRRP 473
>pir||D71135 tldD-related protein PH0848 - Pyrococcus horikoshii
>gi|3257259|dbj|BAA29942.1| (AP000003) 481aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 481
Score = 894 bits (2285), Expect = 0.0
Identities = 430/473 (90%), Positives = 460/473 (96%)
Query: 1 MHDLLEFAVEKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGM 60
MHDLLEFA+E ALELGA+YAEARFEEKQG SL+MKNG+P+GM++LSD+GIG+RVLV+GGM
Sbjct: 9 MHDLLEFAIENALELGASYAEARFEEKQGISLAMKNGIPEGMEILSDKGIGVRVLVNGGM 68
Query: 61 GFASTNILTKESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPP 120
GFASTN+LTKESI ETV+RAVKLAK+ASKLRKEPI FS+E FHNVYYEVKMKKDFRDV P
Sbjct: 69 GFASTNVLTKESIAETVKRAVKLAKAASKLRKEPITFSEEDFHNVYYEVKMKKDFRDVSP 128
Query: 121 EEKLELLKKIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVV 180
EEKLELLKKIEEEV STNV VPMRY+AYSDHVWHK+F+NSENA +ES+IPRVSVMYNLVV
Sbjct: 129 EEKLELLKKIEEEVTSTNVNVPMRYIAYSDHVWHKVFMNSENAKIESLIPRVSVMYNLVV 188
Query: 181 YEEGQMEQAPFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISP 240
+E GQMEQAPF+ RAFSGGLELIEKDEPWERAK+EVETL++IITEGK+ PEGKVD++ISP
Sbjct: 189 FENGQMEQAPFIQRAFSGGLELIEKDEPWERAKREVETLRKIITEGKRSPEGKVDVIISP 248
Query: 241 EVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWG 300
EVAGIAVHESVGHPYELDRIMGREAAQAGESFVKP+MLGERIGSEVVTVIDDPTIPNSWG
Sbjct: 249 EVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPEMLGERIGSEVVTVIDDPTIPNSWG 308
Query: 301 FYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTY 360
FYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTY
Sbjct: 309 FYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTY 368
Query: 361 LAPGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPIL 420
LAPGDYSFEELIED+KLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPIL
Sbjct: 369 LAPGDYSFEELIEDVKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPIL 428
Query: 421 EITTRGLWSSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHARLRDIPLRRP 473
EITTRGLWSSVDAVGKEVEF+ GTCGKGEPGQGVPVWMGGAHARLRDIPLRRP
Sbjct: 429 EITTRGLWSSVDAVGKEVEFYAGTCGKGEPGQGVPVWMGGAHARLRDIPLRRP 481
>pir||D72762 hypothetical protein APE0089 - Aeropyrum pernix (strain K1)
>gi|5103477|dbj|BAA78998.1| (AP000058) 489aa long
hypothetical protein [Aeropyrum pernix]
Length = 489
Score = 431 bits (1096), Expect = e-120
Identities = 220/465 (47%), Positives = 308/465 (65%), Gaps = 3/465 (0%)
Query: 4 LLEFAVEKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFA 63
LLE VEKAL+ GA+YAEARF + G S+ + N G + G+ RV+VDG +GFA
Sbjct: 25 LLEKLVEKALDKGASYAEARFHARLGDSVLVVNDRVVGGGFEIEEGVAFRVIVDGALGFA 84
Query: 64 STNILTKESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEEK 123
ST++L++ES+ V AV +A+S+S+ ++ + S+E Y +K+KKDFR++ E+K
Sbjct: 85 STSLLSEESLDSVVDHAVSIARSSSRGFRKKVGMSEERLGQAQYSLKVKKDFRNLELEDK 144
Query: 124 LELLKKIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEE 183
++ + + + S +V + + +YSD + K+ + S+ +ES+IPRVS+ YN+ E
Sbjct: 145 ASIVLEYSKSLESKSVDLKAKTFSYSDVLEAKLIITSDGGNIESIIPRVSIFYNIAA-EH 203
Query: 184 GQMEQAPFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEVA 243
G + A SGGLEL+ + K +V +L+ + + + P+G +D++ISPE+
Sbjct: 204 GDRRANKWGHLAGSGGLELVGELGLESMLKDDVNSLEVNLVKAEPSPKGVMDVIISPEIV 263
Query: 244 GIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYL 303
G+A+HES+GHP E DR+MGREAAQAG S+ L RIGS VTV DDPT+P S+GFYL
Sbjct: 264 GLALHESIGHPSEADRVMGREAAQAGLSYRM--WLDGRIGSSKVTVADDPTVPGSYGFYL 321
Query: 304 YDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAP 363
YDDE V AR R LI G + E L +R A G++SN AARA+NY EPIVRM+NTYL P
Sbjct: 322 YDDEAVPARERILINKGELAELLHSRTTAYSFGVQSNGAARAMNYRSEPIVRMSNTYLKP 381
Query: 364 GDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEIT 423
GD FEEL+ED+K G+YM S+ EWNID+ R RY+G EAYLI+NG I PV+ +LEI
Sbjct: 382 GDMRFEELLEDVKEGIYMKSYMEWNIDEFRLVARYVGLEAYLIKNGRIVKPVRDTVLEIP 441
Query: 424 TRGLWSSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHARLRDI 468
T +S +D VGK++ F+ G CGKGEP Q +PVWMGG H R+RD+
Sbjct: 442 TESFYSKIDGVGKDLRFYAGICGKGEPPQPLPVWMGGPHVRVRDV 486
>emb|CAC11942.1| (AL445065) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 455
Score = 340 bits (863), Expect = 2e-92
Identities = 195/472 (41%), Positives = 279/472 (58%), Gaps = 25/472 (5%)
Query: 4 LLEFAVEKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDG-GMGF 62
+L++A K+ +A+ARF E +G ++NG +D G IRV+ D M +
Sbjct: 5 ILDYAGSKSA-----FADARFMEIEGRGAVIRNGEFDESLYSNDSGYAIRVVNDSIAMAY 59
Query: 63 ASTNILTKESIV--ETVQRAVKLAKSAS-KLRKEPIKFSDEYFHNVYYEVKMKKDFRDVP 119
+ K V + V R+ + K+ + R E +S+ +V RD
Sbjct: 60 VDSEDWDKVRAVVDDAVLRSRRPGKNRIYRGRSEKASWSEIGSDHV----------RDHS 109
Query: 120 PEEKLELLKKIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLV 179
+ + +LK+ + NV++ A SD H+++ N++ + VE R+ Y +
Sbjct: 110 LGDMIAILKEADSVAEEANVRIS----ALSDRFVHQVYENTDGSHVEGTYSRIFFNYLVG 165
Query: 180 VYEEGQMEQAPFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVIS 239
V E + EQ+ ++GG + + E K +V L+ II P G D+++
Sbjct: 166 VSENDRYEQSS-EEFGWTGGYDAFDFKTISETMKNDVSNLREIILAPSVEP-GNFDVIVG 223
Query: 240 PEVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSW 299
PE++GI HES GHP E DRI GREAA AGESF+ RIGSE V+VIDDPT+ S+
Sbjct: 224 PEISGIVAHESAGHPTEYDRIAGREAALAGESFLTGKTFPYRIGSEKVSVIDDPTLKGSY 283
Query: 300 GFYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANT 359
G+YLYDDEGV+AR RYL RNG +EFL+NRE AA +G SN + R+ +++ EP+ RM+ T
Sbjct: 284 GYYLYDDEGVRARKRYLYRNGYTSEFLINRESAAWIGQESNGSGRSSSWDMEPLARMSTT 343
Query: 360 YLAPGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPI 419
Y+ PGDYSFEEL E + G+Y+ SF EWNIDD R+ +RY+G+EAY IENG+IK V+RPI
Sbjct: 344 YIEPGDYSFEELFEGVHRGIYIKSFTEWNIDDIRFNERYVGKEAYYIENGDIKGRVRRPI 403
Query: 420 LEITTRGLWSSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHARLRDIPLR 471
LE T +S+VDAVGK++ F G CGKG+P QGV VWMGG H RLR++ ++
Sbjct: 404 LETNTIKFYSAVDAVGKDLHFSAGICGKGDPEQGVEVWMGGPHMRLRNMRVK 455
>gb|AAK41402.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 458
Score = 328 bits (832), Expect = 8e-89
Identities = 187/454 (41%), Positives = 274/454 (60%), Gaps = 16/454 (3%)
Query: 19 YAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNILTKESIVETVQ 78
Y E R +S NG G +D G +R DG + FAS+N + + +
Sbjct: 15 YVEVRRHIVSTFGMSFLNGRLMGSFRFTDDGYSVRYYKDGVLYFASSN---NPNDLLSSN 71
Query: 79 RAVKLAKSASKL-RKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEEKLELLKKIEEEVLST 137
+ K+ S L EP + S YEVK K F + +EK+ K + E V
Sbjct: 72 KEYKIEGWESGLDNTEPKEGS--------YEVKEGKPFDLMSVDEKISFFKNLYEAVKDF 123
Query: 138 NVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEGQMEQAPFVSRAFS 197
+ + Y + + K + + + +V V PR+ V NLV+ E + A F S
Sbjct: 124 RSVKSVSFF-YDESIEEKEIIVNGSRIVGRV-PRLYVGMNLVLNENNRTATA-FYELGGS 180
Query: 198 GGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEVAGIAVHESVGHPYEL 257
GGLE++E+ E +V ++ ++ +GK E D+V+S + GI HESVGHP+E
Sbjct: 181 GGLEVLERMNLNEVVVDKVRSVTEVLAKGKSFGERTTDVVLSNMLTGIMAHESVGHPFEA 240
Query: 258 DRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDDEGVKARPRYLI 317
DR++GRE AQAG S++ ++ RIGS+VVTVIDDPTIPNS G+Y DDEGV+ARP+YLI
Sbjct: 241 DRVLGREFAQAGLSYLA-ELKDNRIGSDVVTVIDDPTIPNSGGYYTTDDEGVEARPKYLI 299
Query: 318 RNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDYSFEELIEDIKL 377
++G + E+L NR ++K ++SN +ARA N++REP++RM+NT+ PG+ +F+EL+ED+K
Sbjct: 300 KDGKVNEYLQNRFSSSKFNVKSNGSARAANFDREPLIRMSNTFFKPGNMTFDELLEDVKE 359
Query: 378 GVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRGLWSSVDAVGKE 437
GVY+ S+ EWNIDD R QRY+G EAY I+NG+I PV P+ + T L +VDAV
Sbjct: 360 GVYIKSYMEWNIDDMRLGQRYVGLEAYEIKNGKIGDPVLFPVFQGKTTELLKAVDAVDNT 419
Query: 438 VEFHPGTCGKGEPGQGVPVWMGGAHARLRDIPLR 471
+ F+PGTCGKG+P QG+PVW+GG + RLR++ ++
Sbjct: 420 LVFYPGTCGKGDPDQGIPVWLGGPNMRLRNVRIK 453
>pir||G71248 tldD homolog PH0246 - Pyrococcus horikoshii
>gi|3256635|dbj|BAA29318.1| (AP000001) 504aa long
hypothetical tldd protein [Pyrococcus horikoshii]
Length = 504
Score = 275 bits (695), Expect = 1e-72
Identities = 166/459 (36%), Positives = 265/459 (57%), Gaps = 38/459 (8%)
Query: 19 YAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNILTKESIVETVQ 78
+ + R E + T L+++NG + ++ +RG+G+RVL++G GFASTN LTK I E V+
Sbjct: 70 FMDIRMESIEYTELTIENGKVENLENNGERGVGVRVLING-WGFASTNDLTK--IEEIVK 126
Query: 79 RAVKLAK----SASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEEKLELLKKIEEEV 134
A+K+AK S S ++PI+ NV EVK +D+ EEK++L ++ +
Sbjct: 127 TAIKMAKVSRISTSVYTRDPIE------DNV--EVKQGIKLKDIDLEEKVKLGVEVNNML 178
Query: 135 LSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEGQMEQAPFVSR 194
N+K R +YSD + K++++SE +++ES +PRV + + V G+M Q + S
Sbjct: 179 KRENIKT--RKFSYSDIIVKKLYLSSEGSIIESTVPRVYLSISSVAKFSGKM-QTYWKSF 235
Query: 195 AFSGGLELIEKD--EPWER--AKKEVETLKRIITEGKKPPEGKVDLVISPEVAGIAVHES 250
+GG E++EK E W +KK V L + PP G++ +++ PE+AG+ +HE+
Sbjct: 236 GGTGGWEIVEKIDFEHWANFVSKKAVSLLS-----ARSPPSGEMQVIMDPELAGVFIHEA 290
Query: 251 VGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDDEGVK 310
+GH E D + E+ AG MLG+RI E +TV+DDPT+P +G Y+YDDEG+
Sbjct: 291 LGHASEADAVKQEESILAG-------MLGKRIAVEELTVVDDPTLPGKFGSYIYDDEGIP 343
Query: 311 ARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDYSFEE 370
+ +IR+G++ +L +RE ++ L L N RA +Y+ P+VRM+NTY+ PGD+ FEE
Sbjct: 344 GKRVEIIRDGVLVNYLNDRETSSLLNLEPNGHGRAQSYSHVPLVRMSNTYIEPGDWRFEE 403
Query: 371 LIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRGLWSS 430
+++++K GVYM+ +D + +E YL+ENGEIK ++ L
Sbjct: 404 ILDEVKFGVYMIGDKGGQVDVASGNFMFAAKEGYLVENGEIKGHLRDVALSGNILSALRE 463
Query: 431 VDAVGKEVEFH-PGTCGKGEPGQGVPVWMGGAHARLRDI 468
+ A+G +++ PG CGK GQ VPV GG H + I
Sbjct: 464 IKAIGNDLKIEFPGFCGK---GQWVPVDDGGPHVLTKAI 499
>pir||A75213 tldd protein PAB0154 - Pyrococcus abyssi (strain Orsay)
>gi|5457661|emb|CAB49152.1| (AJ248283) TLDD PROTEIN
[Pyrococcus abyssi]
Length = 452
Score = 260 bits (657), Expect = 3e-68
Identities = 154/451 (34%), Positives = 258/451 (57%), Gaps = 22/451 (4%)
Query: 19 YAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNILTKESIVETVQ 78
+ + RFE T +++NG +G++ + GIG+RVL++G GFASTN L+K + +T++
Sbjct: 18 FMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING-WGFASTNDLSK--LEDTIK 74
Query: 79 RAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEEKLELLKKIEEEVLSTN 138
A+KLAK ++ + P+ + +K KKDF DV EEK +L ++E+ +
Sbjct: 75 MAIKLAKVSNA--EVPLYVGNPVEGKAI--IKQKKDFLDVDLEEKTKLGLEVEKMIRRDK 130
Query: 139 VKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEGQMEQAPFVSRAFSG 198
+K +YSD V KI++NSE +V+E+V+PR+ + V + Q + S +
Sbjct: 131 IKTSR--FSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVA-RSADIMQTYWKSFGGTV 187
Query: 199 GLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEVAGIAVHESVGHPYELD 258
G EL+E + + + + + + PP G++ +++ PE+AG+ +HE++GH E D
Sbjct: 188 GWELVESVD-FNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEAD 246
Query: 259 RIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDDEGVKARPRYLIR 318
+ E+ +G M+G++IGSE +TVIDDPT+P +G Y+YDDEG+ + +I+
Sbjct: 247 SVRQGESILSG-------MIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIK 299
Query: 319 NGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDYSFEELIEDIKLG 378
+G++ +L +RE + L L N RA +Y P+VRM+NTY+APG+++ EE+ E++K G
Sbjct: 300 DGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFG 359
Query: 379 VYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRGLWSSVDAVGKEV 438
VYM+ +D + +E Y+I+ GEIK V+ + + AVG+++
Sbjct: 360 VYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDL 419
Query: 439 EFH-PGTCGKGEPGQGVPVWMGGAHARLRDI 468
+ PG CGK GQ VPV GG H ++ I
Sbjct: 420 KIEFPGFCGK---GQWVPVDDGGPHVLVKAI 447
>sp|Q58403|Y996_METJA HYPOTHETICAL PROTEIN MJ0996 >gi|2826357|gb|AAB99001.1| (U67542)
conserved hypothetical protein [Methanococcus
jannaschii]
Length = 451
Score = 247 bits (624), Expect = 2e-64
Identities = 160/456 (35%), Positives = 249/456 (54%), Gaps = 17/456 (3%)
Query: 9 VEKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNIL 68
+EK LE+G +YA+ R + ++++K+G + + G+ +RVL G GF ++NI+
Sbjct: 7 IEKLLEVG-DYADIRINFGESNTITLKDGKIEEISSGFGNGVAVRVLYKNGWGFVTSNIV 65
Query: 69 TKESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEEKLELLK 128
++E I + + +A K+AK +++ ++ I D Y++ K + DV EEK E++
Sbjct: 66 SEEEIEKLINKAYKMAKISNEYSEKEIILKDYKAIIDNYKMIGKINPTDVDIEEKKEII- 124
Query: 129 KIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEGQMEQ 188
I+ T+ K+ ++YSD +IF+ SE + +E I R + N V E G ++
Sbjct: 125 -IDTYKNMTDEKIKSISVSYSDVFGKRIFMISEGSRIEGEITRCIMYMNCVAKENGNLQY 183
Query: 189 APFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEVAGIAVH 248
R G E I KD A + R++ + K P+GK +++ PE+AG+ +H
Sbjct: 184 G--AERTGGFGFEKI-KDNYLNLALEAKNRALRLL-KAKPCPKGKFKVILDPELAGVFIH 239
Query: 249 ESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDDEG 308
E+VGH E D ++ ++ V D LGER+GSE VTVIDD TI ++G Y YDDEG
Sbjct: 240 EAVGHASEADLVLQNDS-------VFKDKLGERVGSEYVTVIDDATIEGAFGSYKYDDEG 292
Query: 309 VKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDYSF 368
V+ + +I NGI+ +L +RE A ++ RA N+ PIVRM+NT++ PGD+SF
Sbjct: 293 VEGKKTVIIENGILKTYLHSRETAGRMDAELTGNGRAEGLNK-PIVRMSNTFIKPGDWSF 351
Query: 369 EELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRGLW 428
EEL+ED K G+++ +D + ++ EAYLIENGE+ +K L +
Sbjct: 352 EELLEDTKEGIFLKGSRGGQVDTGKGLFQFSAVEAYLIENGELTQVLKDAGLSGEILDIL 411
Query: 429 SSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHAR 464
VDAV K+ E G CGK GQ VPV GG R
Sbjct: 412 FKVDAVTKDFELSVGYCGK--DGQSVPVGDGGGCVR 445
>pir||D64424 tldD homolog MJ0996 - Methanococcus jannaschii
Length = 451
Score = 245 bits (619), Expect = 8e-64
Identities = 159/456 (34%), Positives = 248/456 (53%), Gaps = 17/456 (3%)
Query: 9 VEKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNIL 68
+EK LE+G +YA+ R + ++++K+G + + G+ +RVL G GF ++NI+
Sbjct: 7 IEKLLEVG-DYADIRINFGESNTITLKDGKIEEISSGFGNGVAVRVLYKNGWGFVTSNIV 65
Query: 69 TKESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEEKLELLK 128
++E I + + +A K+AK +++ ++ D Y++ K + DV EEK E++
Sbjct: 66 SEEEIEKLINKAYKMAKISNEYSEKEXILKDYKAIIDNYKMIGKINPTDVDIEEKKEII- 124
Query: 129 KIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEGQMEQ 188
I+ T+ K+ ++YSD +IF+ SE + +E I R + N V E G ++
Sbjct: 125 -IDTYKNMTDEKIKSISVSYSDVFGKRIFMISEGSRIEGEITRCIMYMNCVAKENGNLQY 183
Query: 189 APFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEVAGIAVH 248
R G E I KD A + R++ + K P+GK +++ PE+AG+ +H
Sbjct: 184 G--AERTGGFGFEKI-KDNYLNLALEAKNRALRLL-KAKPCPKGKFKVILDPELAGVFIH 239
Query: 249 ESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDDEG 308
E+VGH E D ++ ++ V D LGER+GSE VTVIDD TI ++G Y YDDEG
Sbjct: 240 EAVGHASEADLVLQNDS-------VFKDKLGERVGSEYVTVIDDATIEGAFGSYKYDDEG 292
Query: 309 VKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDYSF 368
V+ + +I NGI+ +L +RE A ++ RA N+ PIVRM+NT++ PGD+SF
Sbjct: 293 VEGKKTVIIENGILKTYLHSRETAGRMDAELTGNGRAEGLNK-PIVRMSNTFIKPGDWSF 351
Query: 369 EELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRGLW 428
EEL+ED K G+++ +D + ++ EAYLIENGE+ +K L +
Sbjct: 352 EELLEDTKEGIFLKGSRGGQVDTGKGLFQFSAVEAYLIENGELTQVLKDAGLSGEILDIL 411
Query: 429 SSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHAR 464
VDAV K+ E G CGK GQ VPV GG R
Sbjct: 412 FKVDAVTKDFELSVGYCGK--DGQSVPVGDGGGCVR 445
>pir||E71033 tldD-related protein PH1557 - Pyrococcus horikoshii
>gi|3257986|dbj|BAA30669.1| (AP000006) 458aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 458
Score = 235 bits (592), Expect = 1e-60
Identities = 162/462 (35%), Positives = 236/462 (51%), Gaps = 22/462 (4%)
Query: 8 AVEKALE-----LGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGF 62
A+EKAL + A Y E R+E+ + T+L++K+GV +RG+ IRVLV+G GF
Sbjct: 6 ALEKALRWAEENIKAEYIELRYEDIKRTALNLKDGVFVNFTEKLNRGVAIRVLVNGAWGF 65
Query: 63 ASTNILTKESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEE 122
+ST+ L K + E ++ A KLAK AS+ +KE IK ++ + + KMK R+V EE
Sbjct: 66 SSTSELDK--VEEAIKEAYKLAKVASETKKEKIKLAEIKPVEDFVKSKMKIKPREVDIEE 123
Query: 123 KLELLKKIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYE 182
K+ LK++E +L + V + Y D KI + +E +E + + E
Sbjct: 124 KINHLKELEN-LLKEDKAVKSVNIRYEDGGGQKILLTNEGTKIEWDYNYLWQGVYVTGKE 182
Query: 183 EGQMEQAPFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEV 242
+G++ A A G EL+ + EP E+ + + +G P G+ +V P +
Sbjct: 183 DGKLAMARDTIGAVDYGWELMTEKEPNEKVRDRILRKLHSQLKGITPKRGEFPVVAGPII 242
Query: 243 AGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFY 302
GI HE++GH E D M D+LG++I E VT+ + + +G
Sbjct: 243 VGIIAHEALGHLAEADLTMNSPFK---------DLLGKQIAPEYVTM-SERHVEGGFGND 292
Query: 303 LYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLA 362
YDDEGV R ++I NGI+ E ++NREYA K + N ARA +Y PI+RM NT
Sbjct: 293 KYDDEGVPVRDIHIIENGILKEIMLNREYATKFNMEPNGHARAQDYRYPPIIRMRNTVFE 352
Query: 363 PGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEI 422
PGD+SFEE+IEDIK G Y+V F Q I +E Y+I NGEI P++ +
Sbjct: 353 PGDWSFEEMIEDIKFGYYLVDFRGGQAQLNSAFQVGI-QEGYVIRNGEIAEPIRDTSITG 411
Query: 423 TTRGLWSSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHAR 464
+ AVGK+ G CGK GQ V GG H R
Sbjct: 412 VAIEALKKITAVGKDFGIEVGFCGK---GQTAFVSSGGPHMR 450
>pir||C75180 tldd related protein PAB1955 - Pyrococcus abyssi (strain Orsay)
>gi|5458032|emb|CAB49522.1| (AJ248284) TLDD RELATED
PROTEIN [Pyrococcus abyssi]
Length = 458
Score = 232 bits (586), Expect = 6e-60
Identities = 159/462 (34%), Positives = 239/462 (51%), Gaps = 22/462 (4%)
Query: 8 AVEKALE-----LGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGF 62
++EKAL+ + A Y E R+E+ + T+L++K+GV +RG+ IRVL +G GF
Sbjct: 6 SLEKALKWAEENIKAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGF 65
Query: 63 ASTNILTKESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEE 122
+ST+ L+K + E ++ A KLAKSAS+ +KE I+ ++ + + KMK R+V EE
Sbjct: 66 SSTSDLSK--LEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEE 123
Query: 123 KLELLKKIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYE 182
K++ L ++E+ +L + V + Y D KI + +E +E + + +
Sbjct: 124 KVKHLTELEK-LLKEDETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKK 182
Query: 183 EGQMEQAPFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEV 242
EG++ A A G EL+ + EP E+ K + G P G+ +V P +
Sbjct: 183 EGKLAMARDSIGAVDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPII 242
Query: 243 AGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFY 302
G+ HE++GH E D M D+LG++I E VT+ + + +G
Sbjct: 243 VGLIAHEALGHLAEADLTMNSPFK---------DLLGKQIAPEYVTM-SERYVEGGFGND 292
Query: 303 LYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLA 362
YDDEGV + ++I NGI+ E ++NREYAAK + N ARA +Y PI+RM NT
Sbjct: 293 KYDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFE 352
Query: 363 PGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEI 422
PGD+SFEE+IEDIK G Y+V F Q I +E Y+I NGEI P++ +
Sbjct: 353 PGDWSFEEMIEDIKFGYYLVDFRGGQAQLNSAFQVGI-QEGYVIRNGEIAEPIRDTSITG 411
Query: 423 TTRGLWSSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHAR 464
+ AVGK+ G CGK GQ V GG H R
Sbjct: 412 VAIEALKKISAVGKDFAIETGFCGK---GQIAFVSSGGPHMR 450
>sp|O26944|Y856_METTH HYPOTHETICAL PROTEIN MTH856 >gi|7429832|pir||C69214 zinc
metalloproteinase - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621948|gb|AAB85354.1| (AE000862)
zinc metalloproteinase [Methanobacterium
thermoautotrophicum]
Length = 454
Score = 228 bits (574), Expect = 1e-58
Identities = 160/460 (34%), Positives = 240/460 (51%), Gaps = 31/460 (6%)
Query: 13 LELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNILTKES 72
+E YA+ R + +S+ MK+G Q ++ G IRVL +G GFA T+ ++
Sbjct: 15 IEDRVEYADIRAGTSRTSSILMKDGKLQEVKSGRASGFRIRVLRNGSWGFAFTDEPSRLG 74
Query: 73 IVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEEKLELLKKIE- 131
+ A+K K LR + ++ V+ + DVP EK EL+
Sbjct: 75 -----EMALKAIKMTGSLRGD-VQVGSGAPSVDKTMVRSSRPPSDVPAAEKRELVSDAHH 128
Query: 132 ----EEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEGQME 187
+ V+ST V +Y D F+NSE +++E RV++ N V +G
Sbjct: 129 AASVDGVVSTTV-------SYVDMESSSAFLNSEGSLIEMAETRVALFLNAVA-SDGSGI 180
Query: 188 QAPFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEVAGIAV 247
Q S +GG E++E+++ E ++ E R++ + PP G+ D+V PE+ G+ +
Sbjct: 181 QFGHKSCGGTGGFEILEREDIEELGRRTGEKAVRLL-KASPPPSGRFDIVTDPELTGVFI 239
Query: 248 HESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDDE 307
HE++GH E D I+ ++ G+ LGE+I SE VT+IDDPTI + +G Y YD E
Sbjct: 240 HEALGHAAEADLILQGDSILEGK-------LGEKIASEGVTIIDDPTI-DGFGSYSYDAE 291
Query: 308 GVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDYS 367
GV+A L+ NG++T L +RE A KLGL + AR+ +PIVRM+NTYL PGD S
Sbjct: 292 GVRAAETVLVENGVLTSLLNSRETAFKLGLEPSGNARSA-IGDQPIVRMSNTYLKPGDLS 350
Query: 368 FEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRGL 427
F+ELIEDI+ GVY+ +D + ++ E++ I++GEI PVK L
Sbjct: 351 FDELIEDIRNGVYLRGSRGGQVDTGKGIFQFNAAESFRIQDGEIAEPVKDVSLSGNVLET 410
Query: 428 WSSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHARLRD 467
+VD VG + G CGK GQ VPV GG H R+R+
Sbjct: 411 LKNVDGVGSDFRLGIGFCGKS--GQSVPVGDGGPHVRIRN 448
>pir||D70703 tldD homolog Rv2315c - Mycobacterium tuberculosis (strain H37RV)
>gi|1524285|emb|CAB02052.1| (Z79702) hypothetical
protein Rv2315c [Mycobacterium tuberculosis]
Length = 505
Score = 186 bits (467), Expect = 5e-46
Identities = 143/487 (29%), Positives = 230/487 (46%), Gaps = 33/487 (6%)
Query: 4 LLEFAVEKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFA 63
L + A+ A GA++A+ R + +++G + + + G+ +RV+V G GFA
Sbjct: 19 LADAALSAAATAGASHADLRVHRISTEIIQLRDGELETAVISRELGLAVRVIVAGTWGFA 78
Query: 64 STNILTKESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFR----DVP 119
S L + T + AV +A + L E ++ + E VY + + ++R VP
Sbjct: 79 SHAELAPDVAAATARHAVHVATVLAALNTERVRLAPE---PVYTDAEWVSNYRIDPFGVP 135
Query: 120 PEEKLELLKKIEEEVL--------STNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPR 171
EK+ +L+ +L S ++ Y+D F +S ++P
Sbjct: 136 ASEKIAVLRDYSGRLLDADGIDHVSASLNAVKEQTFYAD-----TFGSSITQQRVRLLPC 190
Query: 172 VSVMYNLVVYEEGQMEQAPFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPE 231
+ + V G E ++ + G E++ DE W E+ L ++ E + P
Sbjct: 191 LDAV--AVDSAAGNFESMRTLAPPTARGWEVVAGDEIWNWTD-ELAQLPSLLAEKVRAPS 247
Query: 232 ---GKVDLVISPEVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGE-RIGSEVV 287
G DLVI P + +HES+GH E DR +G EAA AG SF PD LG R GS V+
Sbjct: 248 VMPGPTDLVIDPTNLWLTIHESIGHATEYDRAIGYEAAYAGTSFATPDKLGTLRYGSPVM 307
Query: 288 TVIDDPTIPNSWGFYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLG-LRSNAAARAI 346
V D T YDDEGV A+ L+R+G+ + ++R +A +LG RSN + A
Sbjct: 308 NVTADRTAEFGLATVGYDDEGVAAQSWDLVRDGVFVGYQLDRAFAPRLGEPRSNGCSYAD 367
Query: 347 NYNREPIVRMANTYLAPG--DYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAY 404
+ + PI RMAN L PG D S +LI + G+Y+V W+ID +RY ++ G+ +
Sbjct: 368 SPHHVPIQRMANISLQPGIEDLSTADLIGRVDDGIYIVGDKSWSIDMQRYNFQFTGQRFF 427
Query: 405 LIENGEIKHPVKRPILEITTRGLWSSVDAVGKEVEFHPG---TCGKGEPGQGVPVWMGGA 461
I G++ ++ + +T W++++AVG + G CGK +PGQ V G
Sbjct: 428 RIRGGQLYGQLRDVAYQSSTTDFWNAMEAVGGPSTWRMGGAINCGKAQPGQVAAVSHGCP 487
Query: 462 HARLRDI 468
A R +
Sbjct: 488 SALFRGV 494
>gi|11498263 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3123065|sp|O29602|Y655_ARCFU HYPOTHETICAL PROTEIN
AF0655 >gi|7429834|pir||G69331 conserved hypothetical
protein AF0655 - Archaeoglobus fulgidus
>gi|2649963|gb|AAB90585.1| (AE001059) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 425
Score = 180 bits (452), Expect = 3e-44
Identities = 132/439 (30%), Positives = 219/439 (49%), Gaps = 37/439 (8%)
Query: 21 EARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNILTKESIVETVQRA 80
+ R E +L ++NG + + G RVL +G G N+ E + + + A
Sbjct: 5 DIRRVENVSLNLQLENGKLEKPRYNKSTSKGFRVLKNGFWGIFEGNVADDEGLRQAEKNA 64
Query: 81 VKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEEKLELLKKIEEEVLSTNVK 140
+E Y +++K+D +D+ EEK+ELLK +E+ + V
Sbjct: 65 FTQGDGDI----------EEIATKGRYRMRVKRDPQDMSIEEKVELLKDLEKIIRDVCVS 114
Query: 141 VPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEGQMEQAPFVSRAFS--G 198
+ Y + ++ SE VE + R V + G+ F+S+ G
Sbjct: 115 TKLVYFENRRVLQYRDSCGSE---VEYEVLRTGVS----IMGVGKGRSLQFLSKRQMRVG 167
Query: 199 GLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEVAGIAVHESVGHPYELD 258
G E+++ + E+A + VE L +++ PP G++ +V+ +AG+ VHE+ GH E D
Sbjct: 168 GYEVLDGVD--EKAYEIVEVLPKLVN-ALAPPSGEMSVVMDSSLAGVFVHEAFGHAVEAD 224
Query: 259 RIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDDEGVKARPRYLIR 318
++ G L E++ E VT+IDDPT+P +GF+ +DDEGV+A + ++
Sbjct: 225 HVLQGATVLKGR-------LNEKVADESVTIIDDPTLPE-FGFFPFDDEGVRAEKKVIVE 276
Query: 319 NGIITEFLMNREYAAKL-GLRSNAAARAINYNREPIVRMANTYLAPGDYSFEELIEDIKL 377
+G++ FL +RE A KL G+ NA ++ ++ PIVRM+NTY+ YSF+EL+E+ +
Sbjct: 277 DGVLKSFLHSRETAKKLGGVAGNARSQGVDV---PIVRMSNTYIDTHHYSFDELLEECRD 333
Query: 378 GVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRGLWSSVDAVGKE 437
GVY+V + + + YLI+NGE+ V+ L T + +V +G+E
Sbjct: 334 GVYLVGSRGGETNPATGYFHFNAQYGYLIKNGELAEMVRDVSLSGNTLEILRNV-KIGRE 392
Query: 438 VEFHPGTCGKGEPGQGVPV 456
+EF PG CGK GQ VPV
Sbjct: 393 IEFDPGFCGKA--GQLVPV 409
>pir||B83330 hypothetical protein PA2529 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9948585|gb|AAG05917.1|AE004680_5
(AE004680) hypothetical protein [Pseudomonas aeruginosa]
Length = 477
Score = 175 bits (440), Expect = 8e-43
Identities = 137/457 (29%), Positives = 214/457 (45%), Gaps = 21/457 (4%)
Query: 12 ALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNILTKE 71
AL A + R+ ++ G LS++ V + DRG + V ++G +A+TN L+
Sbjct: 11 ALRSRAEFHSLRYVQRSGEYLSVRRNVSEPPHFSQDRGAMLCVRLNGVEAYAATNDLSAA 70
Query: 72 SIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEEKLELLKKIE 131
+ +++A + A+ ++ ++ Y + +D P E + +
Sbjct: 71 GLQAALEQAERQAERIARHALFDVRGLPPASGRSQY----RSPNQDAPFPSLAECYELLA 126
Query: 132 EEVLSTNVKVPMRYLAYSDHVW------HKIFVNSENAVVESVIPRVSVMYNLVVYEEGQ 185
EE + KVP + V+ ++++NS A V ++ Y+
Sbjct: 127 EE----SAKVPRDERLVNWSVFLEVSRQEQLYLNSAGAEQYHEQRFVYPGASVTAYDGHD 182
Query: 186 MEQAPFVSR--AFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEVA 243
+ F GG E+IE+ A + + +++ P G+ DL++ P+
Sbjct: 183 SQTRSFGGHHAGQQGGAEVIERLGLVGAAPRIADQALQLLA-APNTPSGRCDLLLMPDQM 241
Query: 244 GIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGE-RIGSEVVTVIDDPTIPNSWGFY 302
+ +HES+GHP ELDRI+G E AG SF+K + G + GS ++ V DP IP Y
Sbjct: 242 ILQIHESIGHPLELDRILGDERNYAGTSFIKTEDFGRYQYGSSLLNVSFDPEIPEELASY 301
Query: 303 LYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLA 362
DD+G AR YLIR G + L + GL A +RA ++NR PI RMAN L
Sbjct: 302 RQDDDGSPARKEYLIREGRLLRPLGGALSQHRSGLEGVANSRASSWNRAPIDRMANLNLE 361
Query: 363 PGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEI 422
PGD SF +L+ I+ GV M W+IDD R + ++ LIE+GE+K VK P
Sbjct: 362 PGDKSFAQLVAGIERGVLMSYNRSWSIDDARNKFQFGCEWGQLIEDGELKGVVKNPNYRG 421
Query: 423 TTRGLWSSVDAVGKEVEFHP-GT--CGKGEPGQGVPV 456
+ W ++ AVG F GT CGKGEP Q + V
Sbjct: 422 ISAQFWRNLSAVGDAGTFEVLGTPYCGKGEPNQVIRV 458
>pir||D72342 tldD protein - Thermotoga maritima (strain MSB8)
>gi|4981251|gb|AAD35808.1|AE001743_10 (AE001743) tldD
protein [Thermotoga maritima]
Length = 499
Score = 173 bits (434), Expect = 4e-42
Identities = 123/461 (26%), Positives = 216/461 (46%), Gaps = 25/461 (5%)
Query: 13 LELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNILTKES 72
L+ G ++AE FE K +K+G + G+GIR + +A TN L++E+
Sbjct: 52 LKSGGDFAELFFERKYENRYELKDGKIEQATSGEIVGVGIRGFLGTKAVYAYTNDLSREN 111
Query: 73 IVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEE-----KLELL 127
++ A K+ ++ + + E + F N + ++ +PP + K+ ++
Sbjct: 112 LINV---AKKVGEALGETKVEDLTF------NFNRTKRKERHVVLIPPAQVEKTDKVSVM 162
Query: 128 KKIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEGQME 187
KK + + + + Y D+ + NSE E R +M N V ++G +E
Sbjct: 163 KKAYYAAKNYSELIKQVVVWYWDYDQEILVANSEGTWAEDRRVRTRLMINAVAEKDGVLE 222
Query: 188 QAPFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEVAGIAV 247
+ F G E ++ + E AKK R++ E + P GK+ +VI+ G+
Sbjct: 223 RG-FYGPGAGMGFEFFDRIDVEEAAKKAARIAARMV-EAEPAPAGKMTVVIANGFGGVIF 280
Query: 248 HESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDDE 307
HE+VGH E + + AG+ LG+++ +E V+ +DD TIPN WG DDE
Sbjct: 281 HEAVGHGLEATSVAKGASVFAGK-------LGQKVAAECVSAVDDATIPNGWGSANVDDE 333
Query: 308 GVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDYS 367
G + LI G++ +L+++ ++G++S + R +Y P RM+NT++ PGDY
Sbjct: 334 GTPTQRTLLIDKGVLVGYLVDKLGERRMGMKSTGSGRRQDYTFPPTSRMSNTFILPGDYH 393
Query: 368 FEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRGL 427
EE+I + G+Y + +++ + + EAYLIE G I PV+ L +
Sbjct: 394 PEEIIAATEYGLYAKTMGGGSVNPATGEFNFAVSEAYLIEKGRITKPVRGATLIGKGHEI 453
Query: 428 WSSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHARLRDI 468
+D VG ++ G CG VP +G R+++I
Sbjct: 454 IQKIDMVGNDLARDQGMCGSF--SGSVPADVGQPTIRVKEI 492
>gb|AAK40965.1| Zn-dependent protease, tldD protein homolog, putative (tldD)
[Sulfolobus solfataricus]
Length = 443
Score = 171 bits (430), Expect = 1e-41
Identities = 138/476 (28%), Positives = 227/476 (46%), Gaps = 59/476 (12%)
Query: 9 VEKALELGANYAEARFEEKQGTSLSM---KNGVPQGMQLLSDRGIGIRVLVDGGMGFAST 65
++KA ELGA++A+ R+E +++ + V G+ D G IRV+ + GF +T
Sbjct: 5 IKKAEELGASFADIRYERVIANEVTITEDRKYVSHGV----DEGYSIRVIYNRNWGFKAT 60
Query: 66 NILTKESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYE-----VKMKKDFRDVPP 120
+ +T+ I +T+ + DE + VY +K+ KD
Sbjct: 61 DKITENEIEDTINHI----------------YGDERVNIVYLPSKHDTIKIGKDINK-NE 103
Query: 121 EEKLELLKKIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENA--VVESVIPRVSVMYNL 178
EEK+ L K+ +V + + + + Y D ++HK + +SE+ + + +S+ L
Sbjct: 104 EEKINDLHKVASQVNTLHPSIKSYSIKYYDEIFHKEYYSSEDREIIADGSSSSLSI---L 160
Query: 179 VVYEEGQM--EQAPFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITE--GKKPPEGKV 234
VV EG + E + +S ++ + ++ +K RII + G P G+
Sbjct: 161 VVAREGDVTVEVSEILSTQMGYIFDVFDINQVLANLQK------RIINQLKGSTPKAGEY 214
Query: 235 DLVISPEVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPT 294
++++PEV GI HE++GH E D + + + +RIG E + + D P
Sbjct: 215 PVILAPEVVGIFTHEAIGHLSEADVTLNGSLYK---------LRNKRIGDEFLNISDLPA 265
Query: 295 I--PNSWGFYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREP 352
+ P S Y YDDEGV+ R +I NGI+ EF+ +R Y+A LG ARA +Y
Sbjct: 266 MDHPQSSLVY-YDDEGVEGREVKIIENGILKEFMTDRYYSAYLGQPPTGNARAQSYRNFS 324
Query: 353 IVRMANTYLAPGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIK 412
++RM NTY+ PGD S EL E IK G Y+VS Q I +E Y +EN EIK
Sbjct: 325 LIRMRNTYMKPGDASLNELFEGIKEGYYLVSPIGGETSSNGTFQFAI-QEGYRVENSEIK 383
Query: 413 HPVKRPILEITTRGLWSSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHARLRDI 468
P++ + T ++++ + K+ G C K GQ V V GG H +++ +
Sbjct: 384 EPLRNIGISGNTISTLNAIEMISKDFGMSSGFCEKN--GQTVQVSNGGPHIKVKKL 437
>emb|CAB57642.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 443
Score = 171 bits (430), Expect = 1e-41
Identities = 138/476 (28%), Positives = 227/476 (46%), Gaps = 59/476 (12%)
Query: 9 VEKALELGANYAEARFEEKQGTSLSM---KNGVPQGMQLLSDRGIGIRVLVDGGMGFAST 65
++KA ELGA++A+ R+E +++ + V G+ D G IRV+ + GF +T
Sbjct: 5 IKKAEELGASFADIRYERVIANEVTITEDRKYVSHGV----DEGYSIRVIYNRNWGFKAT 60
Query: 66 NILTKESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYE-----VKMKKDFRDVPP 120
+ +T+ I +T+ + DE + VY +K+ KD
Sbjct: 61 DKITENEIEDTINHI----------------YGDERVNIVYLPSKHDTIKIGKDINK-NE 103
Query: 121 EEKLELLKKIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENA--VVESVIPRVSVMYNL 178
EEK+ L K+ +V + + + + Y D ++HK + +SE+ + + +S+ L
Sbjct: 104 EEKINDLHKVASQVNTLHPSIKSYSIKYYDEIFHKEYYSSEDREIIADGSSSSLSI---L 160
Query: 179 VVYEEGQM--EQAPFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITE--GKKPPEGKV 234
VV EG + E + +S ++ + ++ +K RII + G P G+
Sbjct: 161 VVAREGDVTVEVSEILSTQMGYIFDVFDINQVLANLQK------RIINQLKGSTPKAGEY 214
Query: 235 DLVISPEVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPT 294
++++PEV GI HE++GH E D + + + +RIG E + + D P
Sbjct: 215 PVILAPEVVGIFTHEAIGHLSEADVTLNGSLYK---------LRNKRIGDEFLNISDLPA 265
Query: 295 I--PNSWGFYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREP 352
+ P S Y YDDEGV+ R +I NGI+ EF+ +R Y+A LG ARA +Y
Sbjct: 266 MDHPQSSLVY-YDDEGVEGREVKIIENGILKEFMTDRYYSAYLGQPPTGNARAQSYRNFS 324
Query: 353 IVRMANTYLAPGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIK 412
++RM NTY+ PGD S EL E IK G Y+VS Q I +E Y +EN EIK
Sbjct: 325 LIRMRNTYMKPGDASLNELFEGIKEGYYLVSPIGGETSSNGTFQFAI-QEGYRVENSEIK 383
Query: 413 HPVKRPILEITTRGLWSSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHARLRDI 468
P++ + T ++++ + K+ G C K GQ V V GG H +++ +
Sbjct: 384 EPLRNIGISGNTISTLNAIEMISKDFGMSSGFCEKN--GQTVQVSNGGPHIKVKKL 437
>pir||T36780 hypothetical protein SCI28.10 - Streptomyces coelicolor (fragment)
>gi|5525068|emb|CAB50884.1| (AL096844) hypothetical
protein [Streptomyces coelicolor A3(2)]
Length = 435
Score = 158 bits (396), Expect = 1e-37
Identities = 126/426 (29%), Positives = 205/426 (47%), Gaps = 28/426 (6%)
Query: 4 LLEFAVEKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFA 63
L + A+ +A LGA +A+ R E + S +++ P G +D G +RV+ G GFA
Sbjct: 17 LADAALARARALGAEHADFRLERVRNASWRLRDARPAGSSDTTDLGYAVRVVHGGTWGFA 76
Query: 64 STNILTKESIVETVQRAVKLAKSASKLRK-----EPIKFSDEYFHN-----VYYEVKMKK 113
S LT ++ + +AV +AK ++++ K E ++ + E H YE+
Sbjct: 77 SGVDLTLDAAAKVASQAVAMAKLSAQVIKAAGSDERVELAAEPVHADKSWISAYEI---- 132
Query: 114 DFRDVPPEEKLELLKKIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVS 173
D VP +K LL +L+ + + + H +K + ++ V R+
Sbjct: 133 DPFSVPDADKAALLADWSARLLAADGVDHVDASLLTVHE-NKFYADTAGTVTTQQRVRLH 191
Query: 174 VMYNLVVYEE--GQMEQAPFVSRAFSGGLE-LIEKDEPWERAKKEVETLKRIITEGKKPP 230
+ V ++ G+ + ++ G E L W+ E+ + ++ E + P
Sbjct: 192 PVLTAVSVDDSSGEFDSMRTLAPPAGRGWEYLTGTGWDWD---SELAEIPELLAEKMRAP 248
Query: 231 E---GKVDLVISPEVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGE-RIGSEV 286
G DLV+ P + +HES+GH ELDR +G EAA AG SF D LG+ R GSE+
Sbjct: 249 SVEAGLYDLVVDPSNLWLTIHESIGHATELDRALGYEAAYAGTSFATFDQLGKLRYGSEL 308
Query: 287 VTVIDDPTIPNSWGFYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGL-RSNAAARA 345
+ V D T + YDDEGV+ + L+++G + + ++R A G RSN A A
Sbjct: 309 MNVTGDRTAEHGLATVGYDDEGVEGQSWDLVKDGTLVGYQLDRRIARLTGFERSNGCAYA 368
Query: 346 INYNREPIVRMANTYLA--PGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREA 403
+ P+ RMAN L PG S E+LI + G+Y+V W+ID +RY ++ G+
Sbjct: 369 DSPAHVPVQRMANVSLLPDPGGLSTEDLIGGVDRGIYVVGDRSWSIDMQRYNFQFTGQRF 428
Query: 404 YLIENG 409
+ IENG
Sbjct: 429 FRIENG 434
>pir||G70473 tldD homolog - Aquifex aeolicus >gi|2984257|gb|AAC07784.1|
(AE000768) TldD protein [Aquifex aeolicus]
Length = 404
Score = 156 bits (390), Expect = 6e-37
Identities = 113/411 (27%), Positives = 197/411 (47%), Gaps = 20/411 (4%)
Query: 7 FAVEKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTN 66
+ + + G Y E +E+ + T + +++ + D G+G+R++ +G + T
Sbjct: 8 YILSTLMSQGGEYGEIFYEKSRTTRMHLEDRKIDKVTHGYDEGVGLRLIKNGKTYYGYTT 67
Query: 67 ILTKESIVETVQRAVKLAKSASKLRKE-PIKFSDEYFHNVYYEVKMKKDFRDVPPEEKLE 125
T E++ E LAK ++ P+ Y Y EV + D + + + E
Sbjct: 68 NPTFENLKE-------LAKILARGEGHGPVAIGKRYIQG-YTEVLIDPDKESL--KFRAE 117
Query: 126 LLKKIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEGQ 185
+L++ +E+ S K+ D + +N+ E RV V + VV +G+
Sbjct: 118 ILRRADEKARSFGDKIKQVLAVLMDKTREIMVINTLGETAEDTQKRV-VFFVEVVASDGE 176
Query: 186 MEQAPFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEVAGI 245
Q + S G E+ + P A+K + +++ K P G +V+S + G
Sbjct: 177 TLQRGYESLGGRRGFEIFNETPPEVIAEKAAKRALLMLS-AKPAPAGTFTVVMSSQAGGT 235
Query: 246 AVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYD 305
+HE+VGH E D + + AG+ LGE++ SE+VTVIDD T+P G + D
Sbjct: 236 MIHEAVGHGLEADLVQQGLSVYAGK-------LGEKVASELVTVIDDATLPYHNGSFTVD 288
Query: 306 DEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGD 365
DEGV A+ + LI++G++ ++ +R A K G+ S R +Y PIVRM NT++ G
Sbjct: 289 DEGVPAQRKVLIKDGVLVGYMYDRLRAMKDGVESTGNGRRQSYAHIPIVRMTNTFIDKGQ 348
Query: 366 YSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVK 416
+ E++I+D K GV +V ++ + E Y+IENGEI +P++
Sbjct: 349 DNPEDIIKDTKKGVLVVKMGGGEVNTVTGDFVFEVMEGYMIENGEITYPIR 399
>sp|P57478|TLDD_BUCAI TLDD PROTEIN HOMOLOG >gi|10039067|dbj|BAB13101.1| (AP001119) tldD
protein [Buchnera sp. APS]
Length = 483
Score = 150 bits (376), Expect = 2e-35
Identities = 109/470 (23%), Positives = 221/470 (46%), Gaps = 21/470 (4%)
Query: 8 AVEKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNI 67
A+E+ +Y + F+ S ++N + + SD GIG+R + GFA ++
Sbjct: 24 ALEELCTRQLDYGDLYFQSHIHESWILENSIIKEGNYHSDAGIGVRAIRGESTGFAYSDQ 83
Query: 68 LTKESIVETVQRA--VKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEEKLE 125
++ +S+ + ++A + L K + K + S + +Y V + F +EK +
Sbjct: 84 ISLDSLRRSTKKAHSIILTKGSGKTKT----LSKKTIEPIYKNVNPLEGFSS---KEKTD 136
Query: 126 LLKKIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEGQ 185
LL + S + +V + + + +++ +V + P + +++V + G+
Sbjct: 137 LLYRANYIARSLDHRVIEVNASLTGSYEQILVASTDGNLVSDIRPSIQFSISVLVEDHGK 196
Query: 186 MEQAPFVSRAFSGGLELIEKDEPWERAK-----KEVETLKRIITEGKKPPEGKVDLVISP 240
E+ + + + +D+ + + KE + + K+ G +V+
Sbjct: 197 RERGRSGGGSRTDYNFFLNQDDSSKEIRIDHWSKEAVRIALLNLSSKEALSGTFPVVLGS 256
Query: 241 EVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWG 300
G+ +HE++GH E D R+ + +M+G+++ SE+ T+IDD TI N G
Sbjct: 257 GWPGVLLHEAIGHGLEGD--FNRKGTS-----IFTNMIGKKVASELCTIIDDGTIKNQRG 309
Query: 301 FYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTY 360
DDEG + LI NGI+ +++ ++ A +G++S R +Y+ P+ RM NTY
Sbjct: 310 SLSIDDEGTPGQKNILIENGILKKYMQDKLNARLMGVKSTGNGRRESYSCLPMPRMTNTY 369
Query: 361 LAPGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPIL 420
+ G +++I+ + G+Y V+F+ +D + + EAYLI+NG+I P+K L
Sbjct: 370 MLSGKSKLDDIIKSVDYGIYAVNFSGGQVDITSGKFVFSTSEAYLIKNGKIVTPIKNTTL 429
Query: 421 EITTRGLWSSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHARLRDIPL 470
+ + + VG +++ G G+ GQ +PV +G +L ++ +
Sbjct: 430 IGSGLEVMQKISMVGDDLKMDEGMGICGKDGQNIPVGIGQPSMKLENLTI 479
>pir||D83086 conserved hypothetical protein PA4474 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950711|gb|AAG07862.1|AE004861_3 (AE004861)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 480
Score = 146 bits (364), Expect = 6e-34
Identities = 112/448 (25%), Positives = 208/448 (46%), Gaps = 21/448 (4%)
Query: 16 GANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNILTKESIVE 75
G + A+ F+ + S +++G+ + D+G+G+R GFA +N +T E++ +
Sbjct: 34 GIDAADLYFQSQVSESWMLEDGIVKEGSFNLDQGVGVRAQSGEKTGFAYSNAITAEALKQ 93
Query: 76 TVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPE-EKLELLKKIEEEV 134
A ++++ + K V + ++ DV EK+ELLK+I+
Sbjct: 94 AAVAARSISRAGQNGSVQAFKAV------VPARLYAGENPLDVLSRAEKVELLKQIDAAT 147
Query: 135 LSTNVKVPMRYLAYSDHVWHKIFVN-SENAVVESVIPRVSVMYNLVVYEEGQMEQAPFVS 193
+ + ++ ++ + VW +I V S+ ++ + P V +++V + G+ E+
Sbjct: 148 RALDPRIQQVTVSMAG-VWEQILVAASDGSLAADIRPLVRFNVSVIVEQNGRRERGGHGG 206
Query: 194 RAFSGGLELIEKDEPWERAKKEVETLKRIIT--EGKKPPEGKVDLVISPEVAGIAVHESV 251
+ +++D A+ E L++ + E P G + +V+ +G+ +HE+V
Sbjct: 207 GGRTDYRYFLQEDRAMGYAR---EALRQALVNLEAIPAPAGTLPVVMGAGWSGVLLHEAV 263
Query: 252 GHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDDEGVKA 311
GH E D +A +G +GE++ S + T++DD T+ G DDEG +
Sbjct: 264 GHGLEGDFNRKGSSAYSGR-------VGEKVASSLCTIVDDGTLAGRRGSLSVDDEGTPS 316
Query: 312 RPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDYSFEEL 371
LI NG++ ++ ++ A +G+ R +Y P+ RM NTY+ G+ +E+
Sbjct: 317 NCNVLIENGVLKGYMQDKLNARLMGVARTGNGRRESYAHLPMPRMTNTYMLAGESDPQEI 376
Query: 372 IEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRGLWSSV 431
I ++ G+Y + +D + + EAYLIENG I PVK L S V
Sbjct: 377 IASVEKGIYCANLGGGQVDITSGKFVFSTSEAYLIENGRITTPVKGATLIGNGPEAMSRV 436
Query: 432 DAVGKEVEFHPGTCGKGEPGQGVPVWMG 459
VG ++ G G+ GQ VPV +G
Sbjct: 437 SMVGNDLALDSGVGTCGKDGQSVPVGVG 464
>sp|P45297|TLDD_HAEIN TLDD PROTEIN HOMOLOG
Length = 482
Score = 145 bits (361), Expect = 1e-33
Identities = 114/456 (25%), Positives = 203/456 (44%), Gaps = 17/456 (3%)
Query: 18 NYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNILTKESIVETV 77
+YA+ F+ Q S +++G+ + DRG+G+R + GFA + + S+ +
Sbjct: 33 DYADLYFQLSQDESWVLEDGIIKEGSFHIDRGVGVRAVSGEKTGFAYADQINLASLQQCA 92
Query: 78 QRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEEKLELLKKIEEEVLST 137
+ +A+ P F+ N + E+K+ELL ++ +
Sbjct: 93 EAVKGIAQVKQGNLISPSAFN---VVNPIARYAAINPLESLTKEKKIELLHLVDRTARAE 149
Query: 138 NVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEGQMEQAPFVSRAFS 197
+ +V + S + + ++ + + P V + +++V E G+ E+ S
Sbjct: 150 DHRVTKVSASLSSVYEEVLIMATDGTLAADIRPLVRLSISVLVEENGKRERGSCGSGGRF 209
Query: 198 G---GLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEVAGIAVHESVGHP 254
G E+++ D KE + P G + +V+ G+ +HE+VGH
Sbjct: 210 GLDWFFEVVDGDIRAVLFAKEAVRQALVNLSAVAAPAGLMPVVLGAGWPGVLLHEAVGHG 269
Query: 255 YELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDDEGVKARPR 314
E D ES + +GE++ S + T++DD TI N G DDEGV ++
Sbjct: 270 LEGD-------FNRKESSLFTGKIGEQVTSPLCTIVDDGTIENRRGSLTIDDEGVPSQCN 322
Query: 315 YLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDYSFEELIED 374
LI++GI+ ++ ++ A +G+ + R +Y P+ RM NTY+ G F++LI
Sbjct: 323 VLIKDGILQGYMQDKMNARLMGVSTTGNGRRESYAHLPMPRMTNTYMLAGQSQFDDLIAS 382
Query: 375 IKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRGLWSSVDAV 434
+K G+Y F +D + + EAYLIE G+I PVK L + + + V
Sbjct: 383 VKQGIYAPHFGGGQVDITSGKFVFSTSEAYLIEKGKITKPVKGATLIGSGIEVMQKISMV 442
Query: 435 G--KEVEFHPGTCGKGEPGQGVPVWMGGAHARLRDI 468
E++ G CGK GQ VPV +G ++ +I
Sbjct: 443 ADKSELDLGIGVCGK--EGQSVPVGVGQPALKIDEI 476
>sp|P73754|Y863_SYNY3 HYPOTHETICAL 50.4 KD PROTEIN SLR0863 >gi|7429837|pir||S74845 tldD
homolog slr0863 - Synechocystis sp. (strain PCC 6803)
>gi|1652888|dbj|BAA17806.1| (D90909) hypothetical
protein [Synechocystis sp.]
Length = 463
Score = 143 bits (356), Expect = 5e-33
Identities = 120/456 (26%), Positives = 208/456 (45%), Gaps = 24/456 (5%)
Query: 17 ANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNILTKESIVET 76
A++ R E+ +GT +S+++ + + G +RV GG GFAS N E + +
Sbjct: 21 ADFISIRLEQSEGTQISLRSDQVETLSEGIAMGGQVRVCHQGGWGFASFN--RWEQLRQR 78
Query: 77 VQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEEKLELLKKIEEEVLS 136
++ A+ A+ E + + + KD R + +K L + +
Sbjct: 79 LEEAIAAARLIGD--DETLLAPIDPVQQTFINPLTGKDPRQISLADKKALCDHYNDLLRG 136
Query: 137 TNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEG--QMEQAPFVSR 194
T+ K+ ++ YSD + SE ++E + + + + Q+ + SR
Sbjct: 137 TSDKITTTHVRYSDSQQTVLLATSEGTLLEQCWWDLEMRFAATAKDGNGVQVGRETTGSR 196
Query: 195 AFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEVAGIAVHESVGHP 254
G LE +++ A++ V+ L +GK P +VI P + G+ VHE+ GH
Sbjct: 197 RGYGDLENLDQVVQGA-AQRAVKALTLPTVQGKTYP-----VVIDPILTGLFVHEAFGHL 250
Query: 255 YELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDDEGVKARPR 314
E D + F++ LG R G + + D P G Y +DDEGV A
Sbjct: 251 SEADMLY------ENPDFLEVMSLGRRFGPPELQIFDGAAPPGHRGSYGFDDEGVPASTT 304
Query: 315 YLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDYSFEELIED 374
LI++G + L +RE A KLG + AR +NY+ PIVRM NT++ G+ L++
Sbjct: 305 QLIKDGELVGRLHSRETAGKLGEKPTGNARCLNYHYPPIVRMTNTWIGRGETPVANLLDG 364
Query: 375 IKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRGLWSSVDAV 434
I+ G+Y ++ + + + EA++I +G++ PVK L ++++A+
Sbjct: 365 IEEGIYAQNWLGGMTNGEMF--TFSAGEAWMIRHGQLAEPVKDVTLSGNVFKTLANIEAI 422
Query: 435 GKEVEF-HPGTCGKGEPGQ-GVPVWMGGAHARLRDI 468
+ + G CGKG GQ G+ V GG R+RD+
Sbjct: 423 ADDFYWDESGGCGKG--GQNGLAVGCGGPSLRIRDV 456
>sp|P46473|TLDD_ECOLI TLDD PROTEIN >gi|7429829|pir||F65116 tldD protein - Escherichia
coli (strain K-12) >gi|606183|gb|AAA58046.1| (U18997)
ORF_f481 [Escherichia coli] >gi|1732437|dbj|BAA07913.1|
(D44451) TldD protein [Escherichia coli]
>gi|1789640|gb|AAC76276.1| (AE000403) suppresses
inhibitory activity of CsrA [Escherichia coli K12]
Length = 481
Score = 142 bits (355), Expect = 7e-33
Identities = 111/457 (24%), Positives = 213/457 (46%), Gaps = 27/457 (5%)
Query: 10 EKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNILT 69
E+ L+ G Y ++ + E S +++ + + D+G+G+R + GFA + ++
Sbjct: 30 ERRLDYGDLYFQSSYHE----SWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQIS 85
Query: 70 KESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEEKLELLKK 129
++ ++ Q A + + + + + + + H+ Y + + EEKL++L++
Sbjct: 86 LLALEQSAQAARTIVRDSGDGKVQTLGAVE---HSPLYT--SVDPLQSMSREEKLDILRR 140
Query: 130 IEEEVLSTNVKVPMRYLAYSDHVWHKIFVNS-ENAVVESVIPRVSVMYNLVVYEEGQMEQ 188
+++ + +V A V+ I V + + + V P V + +++V E+G+ E+
Sbjct: 141 VDKVAREADKRV-QEVTASLSGVYELILVAATDGTLAADVRPLVRLSVSVLVEEDGKRER 199
Query: 189 AP------FVSRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEV 242
F F L+ + + W KE + + P G + +V+
Sbjct: 200 GASGGGGRFGYEFFLADLDGEVRADAWA---KEAVRMALVNLSAVAAPAGTMPVVLGAGW 256
Query: 243 AGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFY 302
G+ +HE+VGH E D + +G+ +GE + SE+ TV+DD T+ + G
Sbjct: 257 PGVLLHEAVGHGLEGDFNRRGTSVFSGQ-------VGELVASELCTVVDDGTMVDRRGSV 309
Query: 303 LYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLA 362
DDEG + LI NGI+ ++ ++ A +G+ R +Y P+ RM NTY+
Sbjct: 310 AIDDEGTPGQYNVLIENGILKGYMQDKLNARLMGMTPTGNGRRESYAHLPMPRMTNTYML 369
Query: 363 PGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEI 422
PG + +E+IE ++ G+Y +F +D + + EAYLIENG++ PVK L
Sbjct: 370 PGKSTPQEIIESVEYGIYAPNFGGGQVDITSGKFVFSTSEAYLIENGKVTKPVKGATLIG 429
Query: 423 TTRGLWSSVDAVGKEVEFHPGTCGKGEPGQGVPVWMG 459
+ + VG +++ G G+ GQ +PV +G
Sbjct: 430 SGIETMQQISMVGNDLKLDNGVGVCGKEGQSLPVGVG 466
>pir||G82325 tldD protein VC0422 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9654844|gb|AAF93595.1| (AE004129) tldD
protein [Vibrio cholerae]
Length = 481
Score = 139 bits (347), Expect = 6e-32
Identities = 111/451 (24%), Positives = 204/451 (44%), Gaps = 27/451 (5%)
Query: 18 NYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNILTKESIVETV 77
+YA+ F+ SL +++ + + D G+G+R + GFA ++ + E + ++
Sbjct: 34 DYADIYFQSSWHESLVLEDSIIKDGSFNIDCGVGVRAVSGEKTGFAYSDQIQLEGLKQSA 93
Query: 78 QRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEEKLELLKKIE-----E 132
A +A+ L + K + H +Y ++K ELLK+++ +
Sbjct: 94 IAARGIAQQGQNLTVQAFKRAQ---HPAFYGAH--NPLESWEKQQKTELLKQLDAYIRTK 148
Query: 133 EVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEGQMEQAPFV 192
E L T V V + V +I V + + I + + V+ ++G +
Sbjct: 149 EPLITEVSVSL------SGVHEQILVAATDGTYAGDIRPLVRLSISVLAQKGDRRERGSA 202
Query: 193 SRAFSGGLELIEKDEPWERAKKEV--ETLKRIIT--EGKKPPEGKVDLVISPEVAGIAVH 248
G + ++E ++ E +++ + E P G + +V+ G+ +H
Sbjct: 203 GGGGRFGYDYFLQEEAGQKIAFSFADEAIRQALVNLEAVAAPAGTMPVVLGSGWPGVLLH 262
Query: 249 ESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDDEG 308
E+VGH E D + AG+ +G+++ S++ T++DD T+ + G DDEG
Sbjct: 263 EAVGHGLEGDFNRKGSSVFAGK-------VGKKVTSDLCTIVDDGTLKDLRGSLNVDDEG 315
Query: 309 VKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDYSF 368
V + LI GI+ ++ ++ A +G+ R +Y P+ RM NTY+ PG+++
Sbjct: 316 VSGQYNVLIEKGILKGYIQDKLNARLMGVAPTGNGRRESYAHLPMPRMTNTYMLPGEHTP 375
Query: 369 EELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRGLW 428
EE+I +K G+Y +F +D + + EAYLIENG+I P+K L +
Sbjct: 376 EEIIASVKKGIYAPNFGGGQVDITSGKFVFSASEAYLIENGKITRPIKGATLIGSGIEAM 435
Query: 429 SSVDAVGKEVEFHPGTCGKGEPGQGVPVWMG 459
V VG ++ G G+ GQ VPV +G
Sbjct: 436 QQVSMVGNDLALDRGVGVCGKAGQSVPVGVG 466
>pir||F82718 TldD protein XF1127 [imported] - Xylella fastidiosa (strain 9a5c)
>gi|9106089|gb|AAF83937.1|AE003949_1 (AE003949) TldD
protein [Xylella fastidiosa]
Length = 485
Score = 138 bits (343), Expect = 2e-31
Identities = 106/447 (23%), Positives = 202/447 (44%), Gaps = 15/447 (3%)
Query: 16 GANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNILTKESIVE 75
G ++ + F+ + S S+++G+ + ++G+G+R + GFA ++ + +++++E
Sbjct: 35 GVDFGDLYFQHARRESWSIEDGIVKDGTHSIEQGVGVRAISGEKTGFAYSDDINRDALLE 94
Query: 76 TVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDV---PPEEKLELLKKIEE 132
A A++ S+ + ++ + + E+ + V EK+ +++++++
Sbjct: 95 ----AAYAARAISRSPGDGVQGTHAVLLHQERELCLYPALDPVGGMDNAEKIAVMRRVDQ 150
Query: 133 EVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEGQMEQAPFV 192
+ + + +V + S V + S+ + V P V + ++V G+ E
Sbjct: 151 LLRAADPRVTQVMVNLSGGVDVVLIARSDGVLAADVRPLVRLNVQVIVEGHGRRESGYAG 210
Query: 193 SRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEVAGIAVHESVG 252
G EL P E +E + E P G + +V+ G+ +HE+VG
Sbjct: 211 GGGRYGYAELFADGRP-EAFAREALRQALVNLEAIPAPAGVMPVVLGAGWPGVLLHEAVG 269
Query: 253 HPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDDEGVKAR 312
H E D + AG +GER+ S VT++DD T+ G DDEG +
Sbjct: 270 HGLEGDFNRKGTSVYAGR-------IGERVASPGVTIVDDGTLDGRRGSLNIDDEGTPTQ 322
Query: 313 PRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDYSFEELI 372
LI +G++ ++ + A +G+ S R ++ + RM NTY+ G +S EE+I
Sbjct: 323 CTTLIEDGVLVGYMQDTLNARLMGVASTGNGRRESFAHLTMPRMTNTYMRAGVHSREEMI 382
Query: 373 EDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRGLWSSVD 432
+K G+Y V+F +D + + EAYLIE+G + P+K L V
Sbjct: 383 RSVKKGLYAVNFGGGQVDITSGKYVFSATEAYLIEDGRVTAPIKGATLIGNGPETMQRVR 442
Query: 433 AVGKEVEFHPGTCGKGEPGQGVPVWMG 459
+G ++ G G+ GQ VPV +G
Sbjct: 443 MIGDDLALDAGVGVCGKDGQSVPVGVG 469
>gb|AAC43985.2| (U33883) TldD [Bradyrhizobium japonicum]
Length = 479
Score = 132 bits (328), Expect = 1e-29
Identities = 117/452 (25%), Positives = 198/452 (42%), Gaps = 30/452 (6%)
Query: 16 GANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNILTKESIVE 75
GA+ E E Q +L NG + + +G G+R + D +G+A ++ ++ +++
Sbjct: 34 GADDGELFLEYSQTEALMFDNGRLKQATYDTSQGFGLRAVKDDAVGYAHSSDVSLPALIR 93
Query: 76 TVQR--AVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFR--DVPP-EEKLELLKKI 130
AV+ S S P + V++ D D P E K++LL +I
Sbjct: 94 AADAVAAVRGGYSGSFSAPPP-----------HTNVRLYGDDNPLDAPGFETKVKLLAEI 142
Query: 131 EEEVLSTNVKVPMRYLAYSDHVWHKI-FVNSENAVVESVIPRVSVMYNLVVYEEGQMEQA 189
+ + + +V + W + + + + P V V ++V + + E
Sbjct: 143 DAYLRDKDPRVRQVSVTLGA-TWQVVEILRPDGESYRDIRPLVRVNISVVAGQGDRQESG 201
Query: 190 PFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEVAGIAVHE 249
+G E IE W A + E P G++D+V+ G+ +HE
Sbjct: 202 SKGYGGRAGYAEFIESKN-WRDAADGALREALVNLESIPAPAGEMDVVLGAGWPGVMLHE 260
Query: 250 SVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDDEGV 309
+VGH E D R +A AG ++G ++ ++ VTV+DD TI + G DDEG
Sbjct: 261 AVGHGLEGDFNRKRTSAFAG-------LMGRQVAAKGVTVVDDGTIASRRGSLSIDDEGT 313
Query: 310 KARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDYSFE 369
LI +GI+ ++ +R+ A + ++ R Y P+ RM NTY+ GD
Sbjct: 314 PTNRTVLIEDGILVGYMQDRQNARLMNMKPTGNGRRQGYAHVPMPRMTNTYMLAGDRDPA 373
Query: 370 ELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRGLWS 429
E++ +K GV+ +F +D + + EAY IENG+I P+K +L
Sbjct: 374 EILASVKNGVFAANFGGGQVDITSGKYVFQCTEAYKIENGKIGAPLKGAMLIGNGPTDLH 433
Query: 430 SVDAVGKEVEFHP--GTCGKGEPGQGVPVWMG 459
+ +G ++ GTCGK GQGVPV +G
Sbjct: 434 RIRMIGNDLALDTGIGTCGKN--GQGVPVGVG 463
>pir||A82033 TLDD protein homolog NMA0367 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379119|emb|CAB83668.1|
(AL162752) TLDD protein homolog [Neisseria meningitidis
Z2491]
Length = 480
Score = 119 bits (295), Expect = 8e-26
Identities = 107/459 (23%), Positives = 192/459 (41%), Gaps = 36/459 (7%)
Query: 18 NYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNILTKESIVETV 77
+YA+ + S ++ G+ + ++G+G+R + FA + L +SI +
Sbjct: 36 DYADIYCQRTAYESWHLEEGIVKSGSFQINQGVGVRAVSGDKTAFAYADSLCIDSINRSA 95
Query: 78 QRAVKL---------AKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEEKLELLK 128
RAV+ AK S+ R +P+ + + + K+ LL
Sbjct: 96 -RAVRAIGAAGGKVSAKMPSETRGKPVCSASD-------------PIAGLDSAAKVALLN 141
Query: 129 KIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEGQMEQ 188
K+E + + ++ + + + P V + ++ + + EQ
Sbjct: 142 KVEAIAKAADPRIVQVMAGLTCEYDMVYLARLDGKHAADIRPMVRLNVTVIAKQGERREQ 201
Query: 189 APFVSRAFSGGLELIEKDEPWERAKKEVETLKRIIT--EGKKPPEGKVDLVISPEVAGIA 246
S G +L DE R + +K+ +T E + P G++ +V+ G+
Sbjct: 202 G---SAGGGGRYDLAYFDENLVRQFVDA-AVKQALTNLESRPAPAGEMTVVLGNGWPGVL 257
Query: 247 VHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDD 306
+HE+VGH E D + +G +GER+ ++ VTV+D I G DD
Sbjct: 258 LHEAVGHGLEGDFNRKGTSVFSGR-------IGERVAAKGVTVVDQGDIAGRRGSLNIDD 310
Query: 307 EGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDY 366
EG + R LI +GI+ ++ + A G +S R +Y P+ RM NT++ G Y
Sbjct: 311 EGNETRRTVLIEDGILVGYMQDETNARLTGTQSTGNGRRESYASAPMPRMTNTFMENGSY 370
Query: 367 SFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRG 426
EE+I I G+Y V+F +D + + EA+ +E G +++PVK +
Sbjct: 371 EPEEIIASIDKGIYAVNFGGGQVDITSGKFVFSASEAWWVEGGRLQYPVKGATIIGNGPE 430
Query: 427 LWSSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHARL 465
+ V +G + G G+ GQ VPV +G R+
Sbjct: 431 VLKHVSMIGNDTALDSGVGVCGKEGQSVPVGVGQPTLRI 469
>pir||F81010 tldD protein NMB2066 [imported] - Neisseria meningitidis (group B
strain MD58) >gi|7227328|gb|AAF42385.1| (AE002556) tldD
protein [Neisseria meningitidis MC58]
Length = 480
Score = 117 bits (290), Expect = 3e-25
Identities = 106/459 (23%), Positives = 191/459 (41%), Gaps = 36/459 (7%)
Query: 18 NYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNILTKESIVETV 77
+YA+ + S ++ G+ + ++G+G+R + FA + L +SI +
Sbjct: 36 DYADIYCQRTAYESWHLEEGIVKSGSFQINQGVGVRAVSGDKTAFAYADSLCIDSINRSA 95
Query: 78 QRAVKL---------AKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEEKLELLK 128
RAV+ AK S+ R +P+ + + + K+ LL
Sbjct: 96 -RAVRAIGAAGGKVSAKMPSETRGKPVCSASD-------------PIAGLDSAAKVALLN 141
Query: 129 KIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEGQMEQ 188
K+E + + ++ + + + P V + ++ + + EQ
Sbjct: 142 KVEAIAKAADPRIVQVMAGLTCEYDMVYLARLDGKHAADIRPMVRLNVTVIAKQGERREQ 201
Query: 189 APFVSRAFSGGLELIEKDEPWERAKKEVETLKRIIT--EGKKPPEGKVDLVISPEVAGIA 246
S G +L DE + +K+ +T E + P G++ +V+ G+
Sbjct: 202 G---SAGGGGRYDLAYFDENLVHRFVDA-AVKQALTNLESRPAPAGEMTVVLGNGWPGVL 257
Query: 247 VHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDD 306
+HE+VGH E D + +G +GER+ ++ VTV+D I G DD
Sbjct: 258 LHEAVGHGLEGDFNRKGTSVFSGR-------IGERVAAKGVTVVDQGDIAGRRGSLNIDD 310
Query: 307 EGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDY 366
EG + R LI +GI+ ++ + A G +S R +Y P+ RM NT++ G Y
Sbjct: 311 EGNETRRTVLIEDGILVGYMQDETNARLTGTQSTGNGRRESYASAPMPRMTNTFMENGSY 370
Query: 367 SFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRG 426
EE+I I G+Y V+F +D + + EA+ +E G +++PVK +
Sbjct: 371 EPEEIIASIDKGIYAVNFGGGQVDITSGKFVFSASEAWWVEGGRLQYPVKGATIIGNGPE 430
Query: 427 LWSSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHARL 465
+ V +G + G G+ GQ VPV +G R+
Sbjct: 431 VLKHVSMIGNDTALDSGVGVCGKEGQSVPVGVGQPTLRI 469
>dbj|BAB05755.1| (AP001514) suppressor of the inhibitory activity of the cabon
storage regulator (CsrA) [Bacillus halodurans]
Length = 432
Score = 116 bits (288), Expect = 5e-25
Identities = 97/339 (28%), Positives = 156/339 (45%), Gaps = 27/339 (7%)
Query: 133 EVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEGQMEQAPFV 192
EV+ST + + H+W F S + + E + + + + V +EG+ +Q+ +
Sbjct: 109 EVVSTKAY----WKSVQQHIW---FCTSSSELKEDIRTCFMLDFYITVQKEGRTKQSN-L 160
Query: 193 SRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEVAGIAVHESVG 252
+R++ + + E+D ++++ + + P G L++ P A HE VG
Sbjct: 161 TRSWLSPINVQEEDLQELVLYTANAAMEKL--DARPFPSGSYALILGPLAAPGIFHEVVG 218
Query: 253 HPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDDEGVKAR 312
H E D ++A LG +G E VT+IDDPT G Y DDEG A+
Sbjct: 219 HGLEADIASIPQSAFH-------QRLGAMVGCEKVTIIDDPTKEGLPGSYSLDDEGTIAQ 271
Query: 313 PRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDYSFEELI 372
LI G + +L + G +N R INY P+VRM+NT+L PG EE++
Sbjct: 272 QTTLIEKGRVVNYLSHLH----TGHPTNGHGRVINYQHLPLVRMSNTFLLPGTDDPEEMV 327
Query: 373 EDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRGLWSSVD 432
D ++G+Y+ +++ + E YLIE G+I P+ L+ + L S+D
Sbjct: 328 SDTEVGLYVKKAINGDVNMITGEFEIHVAEGYLIEKGQITSPILPTTLKGDGQKLLQSID 387
Query: 433 AVGKEVEFHP---GTCGKGEPGQG-VPVWMGGAHARLRD 467
VG + H G CGK GQ +PV G R+ D
Sbjct: 388 RVGNDFAIHSEVRGGCGK--LGQSPLPVSAGSPTVRVLD 424
>sp|P24231|PMBA_ECOLI PMBA PROTEIN (TLDE PROTEIN) >gi|96308|pir||S13730 pmbA protein -
Escherichia coli >gi|42440|emb|CAA38091.1| (X54152) pmbA
is involved in the production of antibiotic MccB17
[Escherichia coli] >gi|537077|gb|AAA97132.1| (U14003)
pmbA gene product [Escherichia coli]
>gi|1732440|dbj|BAA07915.1| (D44452) TldE protein
[Escherichia coli] >gi|1790682|gb|AAC77192.1| (AE000494)
maturation of antibiotic MccB17, see tld genes
[Escherichia coli K12]
Length = 450
Score = 111 bits (276), Expect = 1e-23
Identities = 115/457 (25%), Positives = 200/457 (43%), Gaps = 64/457 (14%)
Query: 4 LLEFAVEKALELGANY---AEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGM 60
+LE AV ALEL + AE + G S+S + G + ++ SD +GI V
Sbjct: 17 ILEEAVSTALELASGKSDGAEVAVSKTTGISVSTRYGEVENVEFNSDGALGITVYHQNRK 76
Query: 61 GFASTNILTKESIVETVQRAVKLAKSASK------LRKEPIKFSD---EYFHNVYYEVKM 111
G AS+ L+ ++I TVQ A+ +A+ S KE + F + FH
Sbjct: 77 GSASSTDLSPQAIARTVQAALDIARYTSPDPCAGVADKELLAFDAPDLDLFHPA------ 130
Query: 112 KKDFRDVPPEEKLELLKKIEEEVLSTNVKVP-MRYLAYSDHVWHKIFVNSENAVVESVIP 170
+V P+E +EL + E+ L + ++ +++ H K+F NS +
Sbjct: 131 -----EVSPDEAIELAARAEQAALQADKRITNTEGGSFNSHYGVKVFGNSHGMLQGYCST 185
Query: 171 RVSVMYNLVVYEEGQMEQAPFVSRAFSGGLELIEKDEP-WERAKKEVETLKRIITEGKKP 229
R S+ ++ E G ME+ A++ G + + P W A TL R+ +K
Sbjct: 186 RHSLSSCVIAEENGDMER----DYAYTIGRAMSDLQTPEWVGADCARRTLSRL--SPRKL 239
Query: 230 PEGKVDLVISPEVAGIAVHESVGHPYELDRIMGREAAQAGESFVKP-----DMLGERIGS 284
K ++ + EVA VG A AG S + D LG++I
Sbjct: 240 STMKAPVIFANEVATGLFGHLVG-------------AIAGGSVYRKSTFLLDSLGKQILP 286
Query: 285 EVVTVIDDPTIPNSWGFYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAAR 344
+ +T+ + P + +D EGV+ R +I++GI+T++L+ A KLGL+S A
Sbjct: 287 DWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGILTQWLLTSYSARKLGLKSTGHAG 346
Query: 345 AINYNREPIVRMANTYLAPGDYSFEELIEDIKLGVYMVSFNEWNID--DRRYQQRYIGRE 402
I+ N +A SFE++++++ G+ + + Y + G
Sbjct: 347 GIH----------NWRIAGQGLSFEQMLKEMGTGLVVTELMGQGVSAITGDYSR---GAA 393
Query: 403 AYLIENGEIKHPVKRPILEITTRGLWSSVDAVGKEVE 439
+ +ENGEI++PV + + +W ++ VG ++E
Sbjct: 394 GFWVENGEIQYPVSEITIAGNLKDMWRNIVTVGNDIE 430
>pir||F75033 hypothetical protein PAB1548 - Pyrococcus abyssi (strain Orsay)
>gi|5458676|emb|CAB50163.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 443
Score = 101 bits (248), Expect = 3e-20
Identities = 111/425 (26%), Positives = 187/425 (43%), Gaps = 52/425 (12%)
Query: 1 MHDLLEFAVEKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGM 60
M D+ E ++KA ELG E + N + ++R + + V + +
Sbjct: 4 MFDVNELILKKAKELGFGDVVVLSYETNRRQIRFANNEVTVAKHWNERKVELFVEWEKRI 63
Query: 61 GFASTNILTKESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPP 120
S LT+E+I T+ + +K K R++ ++ F Y ++ D V
Sbjct: 64 AGTSITDLTEENIERTL-KTLKANLEKMKPREDYYGIAEGPFK--YEDIPETFDKAIVEL 120
Query: 121 EEKLELLKKIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVV 180
++ E +++ L K L Y+DH KI++ + N V
Sbjct: 121 DDPSEYVERAINAALEEGAKRVAGVL-YTDH--DKIYLTTSNGVE--------------A 163
Query: 181 YEEGQMEQAPFVSRAFSGGLE---------LIEKDEPWERAKKEVETLKRIITEGKKPPE 231
++EG + RAF G LE +++K +P E A ++ + ++ ++ PE
Sbjct: 164 FDEGTGIEISV--RAFIGDLESGHGTNSVRVLKKFDP-ESAGRKAGEIAKMARNPEQGPE 220
Query: 232 GKVDLVISPEVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVID 291
GK D++ P +A + +G + A +AG S+ + L +++ SEVVT+ D
Sbjct: 221 GKFDVIFDP-LAFANLLSYMGWAFSAF------AVEAGFSYFA-NKLDQKVASEVVTIKD 272
Query: 292 DPTIPNSWGFYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNRE 351
+PN +G +DDEGV R LI G + +L N A K G + A A I+
Sbjct: 273 IGNLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAGLIS---- 328
Query: 352 PIVRMANTYLAPGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQ---RYIGREA-YLIE 407
R N L PGDY+ +EL +++K G+Y+ N W + Y I R+ +LIE
Sbjct: 329 --PRAWNIVLEPGDYTKDELFQEVKRGIYIT--NVWYTRFQNYMTGDFSTIPRDGIFLIE 384
Query: 408 NGEIK 412
NGE+K
Sbjct: 385 NGELK 389
>sp|P74002|YD22_SYNY3 HYPOTHETICAL 53.1 KD PROTEIN SLR1322 >gi|7429840|pir||S75512
hypothetical protein slr1322 - Synechocystis sp. (strain
PCC 6803) >gi|1653157|dbj|BAA18073.1| (D90911)
hypothetical protein [Synechocystis sp.]
Length = 489
Score = 97.5 bits (239), Expect = 3e-19
Identities = 104/471 (22%), Positives = 190/471 (40%), Gaps = 35/471 (7%)
Query: 3 DLLEFAVEKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGF 62
D +EF +EK NY E+ TSL+ + G G+RV G +
Sbjct: 44 DFVEFFLEKV-----NYVSCLAEDDAITSLTPR----------LSSGCGVRVYKGKGDCY 88
Query: 63 ASTNILTKESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDF--RDVPP 120
STN ++ + +++ + + + + + Y K K + R P
Sbjct: 89 VSTNDISFNGLRTALEKGLSILGLTLPAGQSFVPELNLEMLRDYAGAKEKDQWLHRCSPM 148
Query: 121 EEKLELLKKIEEEVLSTNVKVPMRYLAYSDHVWHKIFVN-SENAVVESVIPRVSVMYNLV 179
+E ++L +++ R AY W ++ V S+ + SV ++L
Sbjct: 149 QEMSDILLGANQKLDHYASHAQSRRAAYFRD-WQEVLVAASDGTFARDIRLTQSVGFSLF 207
Query: 180 VYEEGQMEQAPFVSRAFSGGLELIEKDEPW--ERAKKEVETLKRIITEGKKPPEGKVDLV 237
+ E + + SG + W E + +EV + G ++
Sbjct: 208 CADG---EHRTSIGKR-SGDTSNPDYLRTWDAETSAQEVAESAGKMLYADYVESGNYPII 263
Query: 238 ISPEVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPN 297
++ + G+ HE+ GH E +I + D GE+I E +T D+ N
Sbjct: 264 MANQFGGVIFHEACGHLLETTQIEHKTTPFL-------DKKGEKIAHENLTAWDEGLTDN 316
Query: 298 SWGFYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMA 357
++G DDEG+ + LI NGI+ F+ +R + + G + R +Y RM
Sbjct: 317 AFGTIDMDDEGMPTQRTLLIENGILKNFIADRTGSIRTGHPRTGSGRRQSYAYAAASRMR 376
Query: 358 NTYLAPGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKR 417
NTY+APG+YS +++ ++ G+Y ++ + + EAYL+ENG++ P+K
Sbjct: 377 NTYIAPGNYSVDDIFNSVEKGIYCKQMGGGSV-GATGEFNFAVSEAYLVENGKLTKPLKG 435
Query: 418 PILEITTRGLWSSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHARLRDI 468
L T + + + +++ G C G V V +G H ++ I
Sbjct: 436 ATLIGTATEIMNKISMSSQDLGLAAGFC--GSVSGSVYVTVGQPHIKVDGI 484
>pir||S70839 tldD homolog - Bradyrhizobium japonicum (fragment)
Length = 313
Score = 97.1 bits (238), Expect = 4e-19
Identities = 70/235 (29%), Positives = 114/235 (47%), Gaps = 16/235 (6%)
Query: 230 PEGKVDLVISPEVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTV 289
P G++D+V+ G+ +HE+VGH E D R +A +G ++G ++ ++ VTV
Sbjct: 74 PAGEMDVVLGAGWPGVMLHEAVGHGLEGDFNRKRTSAFSG-------LMGRQVAAKGVTV 126
Query: 290 IDDPTIPNSWGFYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYN 349
+DD TI + G DDEG LI +GI+ ++ +R+ A + ++ A A Y
Sbjct: 127 VDDGTIASRRGSLSIDDEGTPTNRTVLIEDGILVGYMQDRQNARLMNMKPTGNAAARRYA 186
Query: 350 REPIVRMANTYLAPG-DYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGR--EAYLI 406
P+ RM NTY+ G S ++ +K +F +D +Y+ + EAY
Sbjct: 187 HVPMPRMTNTYMLRGRSRSGRGVLASVKNAASRANFGGGQVDIT--SGKYVSQCTEAYKS 244
Query: 407 ENGEIKHPVKRPILEITTRGLWSSVDAVGKEVEFHP--GTCGKGEPGQGVPVWMG 459
ENG+ P + +L + +G ++ GTCGK GQGVPV +G
Sbjct: 245 ENGKSGGPAEGRMLIGNGPTDLHRIRMIGNDLALDTGIGTCGKN--GQGVPVGVG 297
>pir||E71135 hypothetical protein PH0849 - Pyrococcus horikoshii
>gi|3257260|dbj|BAA29943.1| (AP000003) 443aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 443
Score = 92.1 bits (225), Expect = 1e-17
Identities = 111/458 (24%), Positives = 198/458 (42%), Gaps = 69/458 (15%)
Query: 1 MHDLLEFAVEKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGM 60
M ++ E ++KA ELG E + N + +R + + V+
Sbjct: 4 MFEVNELILKKAKELGLGDVVVLSYETDRRQVRFANNEVTVAKHWHERKV--ELFVEWKK 61
Query: 61 GFASTNILTKESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPP 120
A T+I E ++R +K K+ E +K ++Y Y + +++D+P
Sbjct: 62 RIAGTSITDLSE--ENIERTLKTLKA----NLEKMKPKEDY----YGIAEGPFEYKDIPE 111
Query: 121 EEKLELLKKIE-EEVLSTNVKVPMRYLA-------YSDHVWHKIFVNSENAVVESVIPRV 172
+++ + E + T + + A Y+DH KI++ + N V
Sbjct: 112 TFDKAIIELDDPSEYVETAINAALEEGAKRVAGVLYTDH--DKIYLTTSNDVE------- 162
Query: 173 SVMYNLVVYEEGQMEQAPFVSRAFSGGLE---------LIEKDEPWERAKKEVETLKRII 223
++EG + RAF G LE +++K +P E A ++ + ++
Sbjct: 163 -------AFDEGTGIEISV--RAFIGDLESGHGTNSVRVLKKFDP-ESAGRKAGEIAKLA 212
Query: 224 TEGKKPPEGKVDLVISPEVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIG 283
++ PEG+ D++ P +A + +G + A +AG S+ + L +++
Sbjct: 213 RNPEQGPEGRFDVIFDP-LAFANLLSYMGWAFSAF------AVEAGFSYFA-NKLDQKVA 264
Query: 284 SEVVTVIDDPTIPNSWGFYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAA 343
SE+VT+ D +PN + +DDEGV + LI GI+ +L N A K G + A A
Sbjct: 265 SEIVTIKDVGNLPNGYATRKFDDEGVPTKETILIHKGILKTYLFNTSLAKKYGRETTANA 324
Query: 344 RAINYNREPIVRMANTYLAPGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQ---RYIG 400
I R N L PGDY+ +EL +++K G+Y+ N W + Y I
Sbjct: 325 GLI------APRAWNIVLEPGDYTKDELFQEVKKGIYIT--NVWYTRFQNYMTGDFSTIP 376
Query: 401 REA-YLIENGEIKHPVKRPILEITTRGLWSSVDAVGKE 437
R+ +LIENGE+K P++ + + +V A+ KE
Sbjct: 377 RDGIFLIENGELK-PIRNIRVSDNMLRILQNVVALSKE 413
>pir||E72342 pmbA-related protein - Thermotoga maritima (strain MSB8)
>gi|4981252|gb|AAD35809.1|AE001743_11 (AE001743)
pmbA-related protein [Thermotoga maritima]
Length = 435
Score = 85.0 bits (207), Expect = 2e-15
Identities = 100/426 (23%), Positives = 175/426 (40%), Gaps = 45/426 (10%)
Query: 24 FEEKQGTSLSMKNGVPQGMQLLSDRG---IGIRVLVDGGMGFASTNILTKESIVETVQRA 80
F E + SL + NG + +D G + I+VL DG G T +L E ++
Sbjct: 25 FLETREFSLRLANG---DLDQYTDAGKFNVEIKVLKDGKTGTFRTQVL------ENPEKC 75
Query: 81 VKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKD----FRDVPPEEKLELLKKIEEEVLS 136
+ A S +++ K EYF E + + F + +EK+++ KK E
Sbjct: 76 FEEALSNLQVKDSEEK---EYFFEGGKEYREMETYVGRFEKLSVKEKMDMAKKAHESAAK 132
Query: 137 TNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEGQMEQAPFVSRAF 196
V + + Y D V KI N+ VES + ++ + + + + A
Sbjct: 133 DERVVMVPTVMYKDMVIKKIITNTLGLDVESQMDG-GFLFAMAIARDANPRSGSWYELAR 191
Query: 197 SGGLELIEKDEPWERAKKEVETL--KRIITEGKKPPEGKVDLVISPEVAGIAVHESVGHP 254
+ E + +E +RA +E +L + I GK P V+ A + + E
Sbjct: 192 TP--EDLNPEEIGKRAAEEAISLIGSKTIPSGKYP-------VLMRNTALLDLMEMFIPM 242
Query: 255 YELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDDEGVKARPR 314
+ + + G+ LGE++G+ V++ D P P +DDEGV +
Sbjct: 243 ISAENVQKNLSPLKGK-------LGEQVGNPAVSIKDLPYHPKGLSSTPFDDEGVPTTEK 295
Query: 315 YLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDYSFEELIED 374
+++ NG++ FL N + A K G+ +R N L PG+ SFEEL+++
Sbjct: 296 FVLENGVLKTFLHNLKTARKEGVEPTGNGFVGG------IRPVNLMLMPGEKSFEELLKE 349
Query: 375 IKLGVYMVSFNEWNIDDRRYQQRY-IGREAYLIENGEIKHPVKRPILEITTRGLWSSVDA 433
+ GV + + + + + Y +ENGEI H V+ + L +
Sbjct: 350 MDRGVVITEVEGMHAGANSISGEFSLFAKGYWVENGEIAHGVEDITISGNFLDLLRKIVL 409
Query: 434 VGKEVE 439
VG +V+
Sbjct: 410 VGNDVK 415
>pir||B83086 PmbA protein PA4472 [imported] - Pseudomonas aeruginosa (strain
PAO1) >gi|9950709|gb|AAG07860.1|AE004861_1 (AE004861)
PmbA protein [Pseudomonas aeruginosa]
Length = 449
Score = 83.5 bits (203), Expect = 5e-15
Identities = 100/449 (22%), Positives = 191/449 (42%), Gaps = 45/449 (10%)
Query: 1 MHDLLEFAVEKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGM 60
+ + +E + +A GA+ E +QG S S++ G + ++ D+G GI +
Sbjct: 16 LREQVEQIIAEARRQGASACEVAVSLEQGLSTSVRQGEVETVEFNRDQGFGITLYAGQRK 75
Query: 61 GFASTNILTKESIVETVQRAVKLAKSASK-----LRKEPIKFSDEYFHNVYYEVKMKKDF 115
G AST+ + +I ETV A+ +A+ S+ L + + ++Y+ +
Sbjct: 76 GSASTSATGEAAIRETVAAALAIARHTSEDECAGLADAALMARELPELDLYHPWSLS--- 132
Query: 116 RDVPPEEKLELLKKIEEEVLSTNVKVPMR-YLAYSDHVWHKIFVNSENAVVESVIPRVSV 174
PE+ +E E + + +V + H +++ NS + R S+
Sbjct: 133 ----PEQAVERALACEAAAFAADKRVTKADGTTLNTHQGCRVYGNSHGFIGGYASTRHSL 188
Query: 175 MYNLVVYEEGQMEQAPFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPE-GK 233
++ EGQM Q + G L + RA + + G +P + +
Sbjct: 189 SCVMIAEGEGQM-QRDYWYDVNRRGEALASAESIGRRAAERAAS-----RLGARPVQTAE 242
Query: 234 VDLVISPEVA-GIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDD 292
V ++ +PE+A G+ H L I G + SF++ LG+R+ E +++ +
Sbjct: 243 VPVLFAPEIAVGLFGH-------FLGAISGGSLYRK-SSFLE-GALGQRLFPEWLSIDER 293
Query: 293 PTIPNSWGFYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREP 352
P + + G +D +G+ + + NG + +++ KLGL S A A ++
Sbjct: 294 PHLVGALGSASFDSDGLATYAKPFVENGELVSYVLGTYSGRKLGLPSTANAGGVH----- 348
Query: 353 IVRMANTYLAPGDYSFEELIEDIKLGVYMVSF--NEWNIDDRRYQQRYIGREAYLIENGE 410
N +++ GD LI ++ G+ + N+ Y + G Y +ENGE
Sbjct: 349 -----NLFVSHGDEDQAALIRRMERGLLVTELMGQGVNLVTGDYSR---GAAGYWVENGE 400
Query: 411 IKHPVKRPILEITTRGLWSSVDAVGKEVE 439
I+ PV+ + R L+ + AVGK++E
Sbjct: 401 IQFPVQEVTIAANLRDLFRRIVAVGKDIE 429
>pir||H81869 hypothetical protein NMA1048 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379746|emb|CAB84314.1|
(AL162755) hypothetical protein NMA1048 [Neisseria
meningitidis Z2491]
Length = 443
Score = 78.0 bits (189), Expect = 2e-13
Identities = 93/433 (21%), Positives = 183/433 (41%), Gaps = 47/433 (10%)
Query: 3 DLLEFAVEKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGF 62
DL ++ A GA AEA F E G S+S++ G + ++ D+ + I V V G
Sbjct: 12 DLCRRTLDLAKATGATAAEADFSESLGQSVSVRLGEIEQIEFQQDKSLDITVYVGKRKGR 71
Query: 63 ASTNILTKESIVETVQRAVKLAKSASK-----LRKEPIKFSDEYFHNVYYEVKMKKDFRD 117
A T +++++ +TV+ A +A+ ++ L + ++Y+E D
Sbjct: 72 AGTADFSEQALRDTVRAAADIARHTAEDGCAGLADPELMAQHIGDPDLYHEW-------D 124
Query: 118 VPPEEKLELLKKIEEEVLSTNVKVP-MRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMY 176
+ E + L K+ E+ L+ + ++ A + ++ N+ S+
Sbjct: 125 LDTEAAVGLAKQCEQAALNEDERIENSEGAAVQTGHYQYVYGNTYGFAAHRQSTHHSISC 184
Query: 177 NLVVYEEGQMEQAPFVSRAFSGGLELIEKDEPWERAKKEVE-TLKRIITEGKKPPEGKVD 235
++V +E M++ + + + D P + TL+R+ + P G
Sbjct: 185 SVVAADENGMQRDYW----YDSACRHPDMDSPETIGQTAARRTLRRL--GSRSIPTGNYP 238
Query: 236 LVISPEVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTI 295
++ V+G + VG + A SF+ D +G+++ + + + ++P I
Sbjct: 239 VLFDTTVSGGLIGHLVG-------ALSGGALYRQSSFLI-DSIGKKVLPDFLNLREEPHI 290
Query: 296 PNSWGFYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVR 355
P S+ +D EGV PR++I+NGI+ + ++ A KLG+++ A +
Sbjct: 291 PRSFRSSYFDAEGVATAPRFVIQNGIVEGYFLSSYSARKLGMQTTGNAGGAH-------- 342
Query: 356 MANTYLAPGDYSFEELIEDIKLGVYMVSF--NEWNIDDRRYQQRYIGREAYLIENGEIKH 413
N YL + +L++++ G+ + N Y + G + +ENG I +
Sbjct: 343 --NLYLNHTHETQSDLLKEMGTGLLVTELMGQGANTITGDYSR---GAAGFWVENGVIAY 397
Query: 414 PVKRPILEITTRG 426
PV EIT G
Sbjct: 398 PVH----EITVAG 406
>gb|AAF65318.1|AF234655_1 (AF234655) LmbIH [Streptomyces lincolnensis]
Length = 199
Score = 72.6 bits (175), Expect = 9e-12
Identities = 58/184 (31%), Positives = 82/184 (44%), Gaps = 4/184 (2%)
Query: 283 GSEVVTVIDDPTIPNSWGFYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAA 342
GSE V+V+ DPT + G +DDEG LI G + L +R AA G AA
Sbjct: 1 GSEHVSVVADPTGTGA-GATPWDDEGTPTAAAPLIERGTLVGLLSSRTVAAASGRPLTAA 59
Query: 343 ARAINYNREPIVRMANTYLAPGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGRE 402
P+VRM N L PG + ++L++ + G+ + + ++IDD R +
Sbjct: 60 GARAEGAALPLVRMTNVNLLPGSGTEQDLLDTMGEGLLLTGNHSFSIDDHREVFHFTCEL 119
Query: 403 AYLIENGEIKHPVKRPILEITTRGLW-SSVDAVGKEV-EFHPGT-CGKGEPGQGVPVWMG 459
A+ I G+ P++ P T W S G E H T C KG+P Q V G
Sbjct: 120 AWRIRGGQRVEPLRGPRYHGRTLDFWRSCAHVAGPEAWTMHSVTFCMKGQPVQTARVGHG 179
Query: 460 GAHA 463
A A
Sbjct: 180 AAPA 183
>pir||D82066 pmbA protein VC2535 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9657118|gb|AAF95676.1| (AE004322) pmbA
protein [Vibrio cholerae]
Length = 447
Score = 72.6 bits (175), Expect = 9e-12
Identities = 96/457 (21%), Positives = 195/457 (42%), Gaps = 65/457 (14%)
Query: 5 LEFAVEKALELGA---NYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMG 61
LE AV KALEL A + AE + G S+S + + ++ SD +GI V G
Sbjct: 14 LEAAVAKALELAAASSDAAEVAITKSTGLSVSTRMCEVENVEFNSDGALGITVYRGQRKG 73
Query: 62 FASTNILTKESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVP-- 119
AST+ L++++I +TV A+ +A+ S +D Y E+ M ++ D+
Sbjct: 74 SASTSDLSEKAIRQTVLAALDIAQYTS---------ADPYAGPAPKEL-MVQEIPDLDLF 123
Query: 120 ------PEEKLELLKKIEEEVLSTNVKVPMR-YLAYSDHVWHKIFVNSENAVVESVIPRV 172
P+ ++ E L + K+ +Y H +++ NS + R
Sbjct: 124 HPDEPNPDVAAQIAIAAERAALGYSKKIKQSDGGSYDSHYGVRVYGNSHGLLASYASSRH 183
Query: 173 SVMYNLV-VYEEGQMEQAPFVSRAFSGGLELIEKDEPWERAKKEVETLKRIIT--EGKKP 229
S+ +++ G+ME+ + A +D+ W ++ + ++ + +K
Sbjct: 184 SISCSVIGEGRNGEMERDYSYTVA-------RHRDDLWTPESVGLQAAENTVSRLDPQKL 236
Query: 230 PEGKVDLVISPEVA-GIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVV- 287
G+ ++ + +VA G+ +GH +M A G + K L + +G ++
Sbjct: 237 KTGQFPVMFAADVATGL-----IGH-----LVM---AISGGNLYRKSSFLLDHLGKTILP 283
Query: 288 ---TVIDDPTIPNSWGFYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAAR 344
+ + P + +D EGV+ + +I +G++ +L+ A K+ + A
Sbjct: 284 TWFNISERPHVMRGLASSPFDSEGVRTQDLEIITDGVLATYLLTSYAARKMNMTPTGHAG 343
Query: 345 AINYNREPIVRMANTYLAPGDYSFEELIEDIKLGVYM--VSFNEWNIDDRRYQQRYIGRE 402
I+ N Y+ +++++++++ G+ + V N+ Y + G
Sbjct: 344 GIH----------NWYVKSTGQNYQQMLKELGTGLLVTEVMGQGVNVVTGDYSR---GAA 390
Query: 403 AYLIENGEIKHPVKRPILEITTRGLWSSVDAVGKEVE 439
+ +ENGEIK+PV + + + + AVG ++E
Sbjct: 391 GFWVENGEIKYPVSEITIAGNLKQMLQQIVAVGSDIE 427
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.137 0.396
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180814275
Number of Sequences: 2977
Number of extensions: 7925128
Number of successful extensions: 21015
Number of sequences better than 1.0e-10: 41
Number of HSP's better than 0.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 20855
Number of HSP's gapped (non-prelim): 44
length of query: 473
length of database: 189,106,746
effective HSP length: 57
effective length of query: 416
effective length of database: 154,992,987
effective search space: 64477082592
effective search space used: 64477082592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 167 (69.5 bits)