BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1548 (PAB1548) DE:Hypothetical protein
(443 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75033 hypothetical protein PAB1548 - Pyrococcus abyssi (st... 899 0.0
pir||E71135 hypothetical protein PH0849 - Pyrococcus horikoshii ... 854 0.0
emb|CAC11943.1| (AL445065) conserved hypothetical protein [Therm... 239 4e-62
pir||F72762 hypothetical protein APE0091 - Aeropyrum pernix (str... 178 8e-44
gb|AAK41403.1| Conserved hypothetical protein [Sulfolobus solfat... 164 1e-39
pir||E72342 pmbA-related protein - Thermotoga maritima (strain M... 136 7e-31
pir||B69009 conserved hypothetical protein MTH1070 - Methanobact... 131 2e-29
sp|O26944|Y856_METTH HYPOTHETICAL PROTEIN MTH856 >gi|7429832|pir... 113 5e-24
gb|AAD53904.1|AF176314_14 (AF176314) PmbA [Zymomonas mobilis] 110 4e-23
pir||D72342 tldD protein - Thermotoga maritima (strain MSB8) >gi... 109 5e-23
pir||D64424 tldD homolog MJ0996 - Methanococcus jannaschii 107 3e-22
sp|Q58403|Y996_METJA HYPOTHETICAL PROTEIN MJ0996 >gi|2826357|gb|... 107 3e-22
pir||B75180 antibiotic/peptide maturation related protein PAB195... 106 7e-22
pir||G70473 tldD homolog - Aquifex aeolicus >gi|2984257|gb|AAC07... 103 5e-21
sp|Q57684|Y231_METJA HYPOTHETICAL PROTEIN MJ0231 >gi|2128001|pir... 101 1e-20
pir||G75033 hypothetical protein PAB1547 - Pyrococcus abyssi (st... 101 2e-20
pir||D71135 tldD-related protein PH0848 - Pyrococcus horikoshii ... 100 3e-20
pir||D81151 pmbA protein NMB0839 [imported] - Neisseria meningit... 99 1e-19
pir||F71033 hypothetical protein PH1558 - Pyrococcus horikoshii ... 95 2e-18
pir||H81869 hypothetical protein NMA1048 [imported] - Neisseria ... 94 2e-18
pir||G71248 tldD homolog PH0246 - Pyrococcus horikoshii >gi|3256... 94 4e-18
pir||E70461 pmbA protein - Aquifex aeolicus >gi|2984159|gb|AAC07... 91 2e-17
pir||D82066 pmbA protein VC2535 [imported] - Vibrio cholerae (gr... 90 6e-17
pir||A75213 tldd protein PAB0154 - Pyrococcus abyssi (strain Ors... 88 2e-16
pir||B83086 PmbA protein PA4472 [imported] - Pseudomonas aerugin... 87 4e-16
gi|11498263 conserved hypothetical protein [Archaeoglobus fulgid... 86 7e-16
sp|P45077|PMBA_HAEIN PMBA PROTEIN HOMOLOG >gi|1075002|pir||C6418... 85 1e-15
pir||E71033 tldD-related protein PH1557 - Pyrococcus horikoshii ... 84 3e-15
pir||B71249 hypothetical protein PH0249 - Pyrococcus horikoshii ... 84 3e-15
pir||D72762 hypothetical protein APE0089 - Aeropyrum pernix (str... 83 6e-15
pir||F82718 TldD protein XF1127 [imported] - Xylella fastidiosa ... 83 6e-15
sp|P74002|YD22_SYNY3 HYPOTHETICAL 53.1 KD PROTEIN SLR1322 >gi|74... 83 6e-15
pir||G82325 tldD protein VC0422 [imported] - Vibrio cholerae (gr... 83 8e-15
sp|P57478|TLDD_BUCAI TLDD PROTEIN HOMOLOG >gi|10039067|dbj|BAB13... 82 1e-14
pir||B75213 pmba protein (tlde protein) PAB0155 - Pyrococcus aby... 82 1e-14
pir||C75180 tldd related protein PAB1955 - Pyrococcus abyssi (st... 80 5e-14
pir||F81010 tldD protein NMB2066 [imported] - Neisseria meningit... 80 7e-14
pir||A82033 TLDD protein homolog NMA0367 [imported] - Neisseria ... 78 2e-13
sp|P24231|PMBA_ECOLI PMBA PROTEIN (TLDE PROTEIN) >gi|96308|pir||... 78 3e-13
emb|CAB59433.1| (AL132644) hypothetical protein SCI8.02 [Strepto... 77 4e-13
gb|AAK41402.1| Conserved hypothetical protein [Sulfolobus solfat... 76 7e-13
sp|P46473|TLDD_ECOLI TLDD PROTEIN >gi|7429829|pir||F65116 tldD p... 76 1e-12
gi|11498264 antibiotic maturation protein (pmbA) [Archaeoglobus ... 75 2e-12
gb|AAK40965.1| Zn-dependent protease, tldD protein homolog, puta... 73 5e-12
emb|CAB57642.1| (Y18930) hypothetical protein [Sulfolobus solfat... 73 5e-12
sp|P45297|TLDD_HAEIN TLDD PROTEIN HOMOLOG 72 1e-11
sp|P57191|PMBA_BUCAI PMBA PROTEIN HOMOLOG >gi|10038774|dbj|BAB12... 72 1e-11
pir||D83086 conserved hypothetical protein PA4474 [imported] - P... 71 3e-11
pir||S75708 hypothetical protein sll0887 - Synechocystis sp. (st... 69 7e-11
pir||B82719 PmbA protein XF1131 [imported] - Xylella fastidiosa ... 69 1e-10
>pir||F75033 hypothetical protein PAB1548 - Pyrococcus abyssi (strain Orsay)
>gi|5458676|emb|CAB50163.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 443
Score = 899 bits (2297), Expect = 0.0
Identities = 443/443 (100%), Positives = 443/443 (100%)
Query: 1 MVEMFDVNELILKKAKELGFGDVVVLSYETNRRQIRFANNEVTVAKHWNERKVELFVEWE 60
MVEMFDVNELILKKAKELGFGDVVVLSYETNRRQIRFANNEVTVAKHWNERKVELFVEWE
Sbjct: 1 MVEMFDVNELILKKAKELGFGDVVVLSYETNRRQIRFANNEVTVAKHWNERKVELFVEWE 60
Query: 61 KRIAGTSITDLTEENIERTLKTLKANLEKMKPREDYYGIAEGPFKYEDIPETFDKAIVEL 120
KRIAGTSITDLTEENIERTLKTLKANLEKMKPREDYYGIAEGPFKYEDIPETFDKAIVEL
Sbjct: 61 KRIAGTSITDLTEENIERTLKTLKANLEKMKPREDYYGIAEGPFKYEDIPETFDKAIVEL 120
Query: 121 DDPSEYVERAINAALEEGAKRVAGVLYTDHDKIYLTTSNGVEAFDEGTGIEISVRAFIGD 180
DDPSEYVERAINAALEEGAKRVAGVLYTDHDKIYLTTSNGVEAFDEGTGIEISVRAFIGD
Sbjct: 121 DDPSEYVERAINAALEEGAKRVAGVLYTDHDKIYLTTSNGVEAFDEGTGIEISVRAFIGD 180
Query: 181 LESGHGTNSVRVLKKFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAFANLLSYMG 240
LESGHGTNSVRVLKKFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAFANLLSYMG
Sbjct: 181 LESGHGTNSVRVLKKFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAFANLLSYMG 240
Query: 241 WAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRETVLIER 300
WAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRETVLIER
Sbjct: 241 WAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRETVLIER 300
Query: 301 GTLKTYLFNTSLAKKYGKETTANAGLISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVW 360
GTLKTYLFNTSLAKKYGKETTANAGLISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVW
Sbjct: 301 GTLKTYLFNTSLAKKYGKETTANAGLISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVW 360
Query: 361 YTRFQNYMTGDFSTIPRDGIFLIENGELKPIRNIRVSDNMLRILQNIVGLTKESHHVHWW 420
YTRFQNYMTGDFSTIPRDGIFLIENGELKPIRNIRVSDNMLRILQNIVGLTKESHHVHWW
Sbjct: 361 YTRFQNYMTGDFSTIPRDGIFLIENGELKPIRNIRVSDNMLRILQNIVGLTKESHHVHWW 420
Query: 421 EVSRPVTTPYVLVKEVGITRATK 443
EVSRPVTTPYVLVKEVGITRATK
Sbjct: 421 EVSRPVTTPYVLVKEVGITRATK 443
>pir||E71135 hypothetical protein PH0849 - Pyrococcus horikoshii
>gi|3257260|dbj|BAA29943.1| (AP000003) 443aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 443
Score = 854 bits (2182), Expect = 0.0
Identities = 412/443 (93%), Positives = 436/443 (98%)
Query: 1 MVEMFDVNELILKKAKELGFGDVVVLSYETNRRQIRFANNEVTVAKHWNERKVELFVEWE 60
M+EMF+VNELILKKAKELG GDVVVLSYET+RRQ+RFANNEVTVAKHW+ERKVELFVEW+
Sbjct: 1 MMEMFEVNELILKKAKELGLGDVVVLSYETDRRQVRFANNEVTVAKHWHERKVELFVEWK 60
Query: 61 KRIAGTSITDLTEENIERTLKTLKANLEKMKPREDYYGIAEGPFKYEDIPETFDKAIVEL 120
KRIAGTSITDL+EENIERTLKTLKANLEKMKP+EDYYGIAEGPF+Y+DIPETFDKAI+EL
Sbjct: 61 KRIAGTSITDLSEENIERTLKTLKANLEKMKPKEDYYGIAEGPFEYKDIPETFDKAIIEL 120
Query: 121 DDPSEYVERAINAALEEGAKRVAGVLYTDHDKIYLTTSNGVEAFDEGTGIEISVRAFIGD 180
DDPSEYVE AINAALEEGAKRVAGVLYTDHDKIYLTTSN VEAFDEGTGIEISVRAFIGD
Sbjct: 121 DDPSEYVETAINAALEEGAKRVAGVLYTDHDKIYLTTSNDVEAFDEGTGIEISVRAFIGD 180
Query: 181 LESGHGTNSVRVLKKFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAFANLLSYMG 240
LESGHGTNSVRVLKKFDPESAGRKAGEIAK+ARNPEQGPEG+FDVIFDPLAFANLLSYMG
Sbjct: 181 LESGHGTNSVRVLKKFDPESAGRKAGEIAKLARNPEQGPEGRFDVIFDPLAFANLLSYMG 240
Query: 241 WAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRETVLIER 300
WAFSAFAVEAGFSYFANKLDQKVASE+VTIKD+GNLPNGY TRKFDDEGVPT+ET+LI +
Sbjct: 241 WAFSAFAVEAGFSYFANKLDQKVASEIVTIKDVGNLPNGYATRKFDDEGVPTKETILIHK 300
Query: 301 GTLKTYLFNTSLAKKYGKETTANAGLISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVW 360
G LKTYLFNTSLAKKYG+ETTANAGLI+PRAWNIVLEPGDYTKDELFQEVK+GIYITNVW
Sbjct: 301 GILKTYLFNTSLAKKYGRETTANAGLIAPRAWNIVLEPGDYTKDELFQEVKKGIYITNVW 360
Query: 361 YTRFQNYMTGDFSTIPRDGIFLIENGELKPIRNIRVSDNMLRILQNIVGLTKESHHVHWW 420
YTRFQNYMTGDFSTIPRDGIFLIENGELKPIRNIRVSDNMLRILQN+V L+KES+HVHWW
Sbjct: 361 YTRFQNYMTGDFSTIPRDGIFLIENGELKPIRNIRVSDNMLRILQNVVALSKESYHVHWW 420
Query: 421 EVSRPVTTPYVLVKEVGITRATK 443
EVSRPVTTPYVLVKEVGITRATK
Sbjct: 421 EVSRPVTTPYVLVKEVGITRATK 443
>emb|CAC11943.1| (AL445065) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 430
Score = 239 bits (604), Expect = 4e-62
Identities = 140/444 (31%), Positives = 237/444 (52%), Gaps = 19/444 (4%)
Query: 2 VEMFDVNELILKKAKELGFGDVVVLSYETNRRQIRFANNEVTVAKHWNERKVELFVEWEK 61
+ MFD++ + ++ E F + + + Q+RF+N + W E + +FV K
Sbjct: 1 MNMFDMDRI--SESFEKRFDEYAIEMHVNRDDQVRFSNGSRDLHNIWEESVLLVFVARGK 58
Query: 62 RIAGTSITDLTEENIERTLKTLKANLEKMKPREDYYGIAEGPFKYEDI---PETFDKAIV 118
R T+I + + +ER+++ L +++ + GI + Y + P FD
Sbjct: 59 RTLMTTIKEGAD--LERSIEDLSRRIDQTPENPLFSGINDRKQVYRKLDLPPREFDA--- 113
Query: 119 ELDDPSEYVERAINAALEEGAKRVAGVLYTDHDKIYLTTSNGVEAFDEGTGIEISVRAFI 178
E + A+ + + G++R+AG++Y+ ++ + T ++D G E+ VR+F
Sbjct: 114 -----DELADMAMAGSRDAGSERMAGLVYSMRSRVEIATRYNRGSYDS-IGAEVVVRSFR 167
Query: 179 GDLESGHGTNSVRVLKKFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAFANLLSY 238
GD SG + D + G+++ E A E G EG +DVI P+A N+++
Sbjct: 168 GD-RSGQECGHTGINGYLDAYAIGKRSAESIVNAERHE-GREGHYDVILAPMAAGNIITS 225
Query: 239 MGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRETVLI 298
+AFSA V +G S+ + + +++A+ +V + D G R FD+EG T +I
Sbjct: 226 GSYAFSAHTVISGLSFLQDSMGRQIAAPMVNLYDDPTDTAGMAYRVFDEEGTATSRVPII 285
Query: 299 ERGTLKTYLFNTSLAKKYGKETTANAGLISPRAWNIVLEPGDYTKDELFQEVKRGIYITN 358
E G L TYL +TS A+ ETT NAG+ISP AW + ++ GD + +EL + + G++I N
Sbjct: 286 EHGVLNTYLHSTSTARYMNTETTGNAGIISPEAWQLEMDGGDASAEELISDTREGVFIRN 345
Query: 359 VWYTRFQNYMTGDFSTIPRDGIFLIENGEL-KPIRNIRVSDNMLRILQNIVGLTKESHHV 417
WY RFQ+Y G FST+PRDG++ I NGE+ + IR+SD++ IL+ I L+KE+ +V
Sbjct: 346 SWYLRFQDYRNGVFSTVPRDGVYYIRNGEIAEAWDGIRISDSIPEILKKISALSKETQYV 405
Query: 418 HWWEVSRPVTTPYVLVKEVGITRA 441
WW P PY+ V +G+T++
Sbjct: 406 KWWNEVMPSRLPYIKVSGLGLTKS 429
>pir||F72762 hypothetical protein APE0091 - Aeropyrum pernix (strain K1)
>gi|5103479|dbj|BAA79000.1| (AP000058) 449aa long
hypothetical protein [Aeropyrum pernix]
Length = 449
Score = 178 bits (448), Expect = 8e-44
Identities = 123/414 (29%), Positives = 207/414 (49%), Gaps = 31/414 (7%)
Query: 35 IRFANNEVTVAKHWNERKVELFVEWEKRIAGTSITDLTEENIERTLKTLKANLEKMKPRE 94
++ A V+VA+ + + +E+++ + +IA TS ++ + + LEK
Sbjct: 41 VKAARGSVSVAQGFQDLLLEIYLARDGKIAVTSFKTPRLDDAAKIAARVVDKLEKSP--- 97
Query: 95 DYYGIAEGPFKYEDIPETFDKAIVELDDP-----SEYVERAINAALEEGA-KRVAGVLYT 148
Y +PE + +D+ +E + + L+ ++G+
Sbjct: 98 ----------LYAPLPEPSGSSSQAVDEKVATMVAEGDTAGLTSLLDPDRWGDISGMAEL 147
Query: 149 DHDKIYLTTSNGVEAFDEGTGIEISVRAFIGDLESGHGTNSVRVLKKFDP---ESAGRKA 205
LT SNG E E T R F + SG + V +FD E A R A
Sbjct: 148 AVTTTVLTASNGAELTLEKTSFNGYTRIFGREFRSGQWS---WVSTRFDEKLAEEAIRTA 204
Query: 206 GEIAK-MARNPEQGPE-GKFDVIFDPLAFANLLSYMGWAFSAFAVEAGFSYFA-NKLDQK 262
++A+ ++ PE+ PE G + ++ P+ NLL + + A +V GFS F+ NK +
Sbjct: 205 KQLAEECSKLPEEVPEPGSYRLLLSPMVGGNLLEIVASSLLAGSVLLGFSMFSHNKPGDR 264
Query: 263 VASEVVTIKDIGNLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTA 322
+AS+ +T+ G FDDEGV TR+ IE G LKT+L NT A+ G ETT
Sbjct: 265 IASDALTLSSTPLDDELPGYSMFDDEGVATRDIAAIENGVLKTFLHNTKTARLMGAETTG 324
Query: 323 NAGLISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFL 382
NAG I PR +N+ ++PGD + D +++ + G+Y+TN WYTR QNY+ G FST+ RD +
Sbjct: 325 NAGWILPRLFNLQVDPGDISPDNVYEALGDGLYLTNNWYTRLQNYLEGRFSTVLRDAVIR 384
Query: 383 IENGE---LKPIRNIRVSDNMLRILQNIVGLTKESHHVHWWEVSRPVTTPYVLV 433
+ NG+ P +R++ ++ ++ N+ + +++ WWEV+RP P+++V
Sbjct: 385 VRNGKPVSCTPGYKLRLAGSLKDLIINVEAAGSKPYNIMWWEVNRPFKLPHIIV 438
>gb|AAK41403.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 409
Score = 164 bits (412), Expect = 1e-39
Identities = 106/301 (35%), Positives = 153/301 (50%), Gaps = 12/301 (3%)
Query: 144 GVLYTDHDKIYLTTSNGVEAFDEGTGIEISVRAFIGDLESGHGTNSVRVLKKFDPESAGR 203
G++ D + L TS G + I RA + SG S + + +
Sbjct: 118 GIISIDDVERSLVTSKGFNGTESNLSISGYFRAKNKE-HSGQWAFSSTSFSSSQVKDSIK 176
Query: 204 KAGEIAKMARNPEQGPEGKFDVIFDPLAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKV 263
KA E+A + E EGK+DVI PL NL+ + S +A+ +G S K +K
Sbjct: 177 KANELASITGKYEI-TEGKYDVILSPLVMGNLMESVARMASGYAIMSGMSML--KPGEKA 233
Query: 264 ASEVVTIKDIG--NLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETT 321
S+ T+ D + PN +G FDDEG T +IE G T L N L+ + +T
Sbjct: 234 GSDKFTLLDTPKEDRPNSWG---FDDEGTFTYNKAIIENGVFTTPLLNNELSNVFKLPST 290
Query: 322 ANAGLISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIF 381
NAG I P AWN+ ++ GD + + L ++I NVWYTRFQNY GDFST+ RD
Sbjct: 291 GNAGWIYPTAWNLEVKEGDTSFESLLS--GNVVFINNVWYTRFQNYAEGDFSTVARDATV 348
Query: 382 LIENGE-LKPIRNIRVSDNMLRILQNIVGLTKESHHVHWWEVSRPVTTPYVLVKEVGITR 440
+ NG + I +R++DN+ RIL+NIV L++E + V WW+ PY LVK+V ++
Sbjct: 349 VYRNGNPVGVIGRVRIADNLKRILKNIVELSRERYSVRWWDAPMQGVYPYALVKDVRLSI 408
Query: 441 A 441
A
Sbjct: 409 A 409
>pir||E72342 pmbA-related protein - Thermotoga maritima (strain MSB8)
>gi|4981252|gb|AAD35809.1|AE001743_11 (AE001743)
pmbA-related protein [Thermotoga maritima]
Length = 435
Score = 136 bits (338), Expect = 7e-31
Identities = 123/426 (28%), Positives = 203/426 (46%), Gaps = 22/426 (5%)
Query: 22 DVVVLSYETNRRQIRFANNEVTVAKHWNERKVELFVEWEKRIAGTSITDLTEENIERTLK 81
+V + ET +R AN ++ + VE+ V + + GT T + E N E+ +
Sbjct: 20 EVQISFLETREFSLRLANGDLDQYTDAGKFNVEIKVLKDGK-TGTFRTQVLE-NPEKCFE 77
Query: 82 TLKANLEKMKPREDYYGIAEGPFKYEDIPE---TFDKAIVELDDPSEYVERAI-NAALEE 137
+NL+ E Y EG +Y ++ F+K V+ + + ++A +AA +E
Sbjct: 78 EALSNLQVKDSEEKEY-FFEGGKEYREMETYVGRFEKLSVK--EKMDMAKKAHESAAKDE 134
Query: 138 GAKRVAGVLYTDHD-KIYLTTSNGVEAFDEGTGIEISVRAFIGDLE--SGHGTNSVRVLK 194
V V+Y D K +T + G++ + G + A D SG R +
Sbjct: 135 RVVMVPTVMYKDMVIKKIITNTLGLDVESQMDGGFLFAMAIARDANPRSGSWYELARTPE 194
Query: 195 KFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAFANLLSYMGWAFSAFAVEAGFSY 254
+PE G++A E A + P GK+ V+ A +L+ SA V+ S
Sbjct: 195 DLNPEEIGKRAAEEAISLIGSKTIPSGKYPVLMRNTALLDLMEMFIPMISAENVQKNLSP 254
Query: 255 FANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAK 314
KL ++V + V+IKD+ P G + FDDEGVPT E ++E G LKT+L N A+
Sbjct: 255 LKGKLGEQVGNPAVSIKDLPYHPKGLSSTPFDDEGVPTTEKFVLENGVLKTFLHNLKTAR 314
Query: 315 KYGKETTANAGLISPRAWNIVLEPGDYTKDELFQEVKRGIYITNV-WYTRFQNYMTGDFS 373
K G E T N + R N++L PG+ + +EL +E+ RG+ IT V N ++G+FS
Sbjct: 315 KEGVEPTGNGFVGGIRPVNLMLMPGEKSFEELLKEMDRGVVITEVEGMHAGANSISGEFS 374
Query: 374 TIPRDGIFLIENGEL-KPIRNIRVSDNMLRILQNIVGLTKESHHVHWWEVSRPVTTPYVL 432
+ + +ENGE+ + +I +S N L +L+ IV + + +VS+ P VL
Sbjct: 375 LFAKG--YWVENGEIAHGVEDITISGNFLDLLRKIVLVGNDV------KVSQHTIAPSVL 426
Query: 433 VKEVGI 438
V+ + +
Sbjct: 427 VEVLDV 432
>pir||B69009 conserved hypothetical protein MTH1070 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622168|gb|AAB85559.1| (AE000877) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 430
Score = 131 bits (326), Expect = 2e-29
Identities = 115/446 (25%), Positives = 203/446 (44%), Gaps = 27/446 (6%)
Query: 4 MFDVNELILKKAKELGFGDVVVLSYETNRR-QIRFANNEVTVAKHWNERKVELFVEWEKR 62
MF + E +K A L +G++ + E + ++ + + K + + + + E R
Sbjct: 1 MFGIGEEAVKLA--LRYGEMAEVYIEREKTLEVEIQRDLIDFGKIESMTGIGIRILKEGR 58
Query: 63 IAGTSITDLTEENIERTLKTLKANLEKMKPREDYYGIAEGPFKYEDIPETFDKAI--VEL 120
+ +D + ++ ++ NL+ P E++ G +E P Y + D++ +E+
Sbjct: 59 MGFAYTSD--PDGVDVAVRMAAQNLQLADPDENF-GFSE-PSTYPSVKGIHDRSFDDLEV 114
Query: 121 DDPSEYVERAINAALEEGAKRVAGVLYTDHDKIYLTTSNGVEAFDEGTGIE--ISVRAFI 178
+D E R IN LEEG K +G + ++ S GVE TG ISV A
Sbjct: 115 EDSVEMAGRMINRVLEEGCKPTSGGFTASRIETFILNSEGVEESSSSTGFSAHISVTAGE 174
Query: 179 GDLESGHGTNSVRVLKKFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAFANLLSY 238
+++ + +PE +A IA+ + G+ + D A A LL
Sbjct: 175 NGMKTTAYESDSSCKLDINPEWVAGRACRIARDSMGGRSIESGRIPAVLDYHAAAGLLGT 234
Query: 239 MGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRETVLI 298
AFSA V+ G S A+++ +V E +++ D G L G G+ FD EG P++ T L+
Sbjct: 235 FAGAFSADNVQRGRSVLADRIGSQVTGEGLSVYDDGTLEGGLGSAPFDGEGTPSQRTALV 294
Query: 299 ERGTLKTYLFNTSLAKKYGKETTANA--GLISPRA---WNIVLEPGDYTKDELFQEVKRG 353
E G L+ Y+ N A K ++T N G + A N +LE + F RG
Sbjct: 295 EDGILRGYMHNIYTASKGRADSTGNGLRGYMEVPAVSTTNFILEFDSTVPLDDF----RG 350
Query: 354 IYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGELKPIRNIRVSDNMLRILQNIVGLTKE 413
I++T+V N ++GDFS + + F+ ++GE P++ +S N+ ++ + E
Sbjct: 351 IFVTDVLGAHTANPISGDFS-VEANNAFMADSGEFTPVKKAMLSGNIFELMMKVSSTDLE 409
Query: 414 SHHVHWWEVSRPVTTPYVLVKEVGIT 439
V + VT P ++V++V +T
Sbjct: 410 RRQVGGF-----VTAP-LMVEDVHVT 429
>sp|O26944|Y856_METTH HYPOTHETICAL PROTEIN MTH856 >gi|7429832|pir||C69214 zinc
metalloproteinase - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621948|gb|AAB85354.1| (AE000862)
zinc metalloproteinase [Methanobacterium
thermoautotrophicum]
Length = 454
Score = 113 bits (279), Expect = 5e-24
Identities = 111/375 (29%), Positives = 167/375 (43%), Gaps = 49/375 (13%)
Query: 65 GTSITDLTEENIERTLKTLKANLEKMKPREDYYGIAEGPFKYEDIPETFDKAIVELDDPS 124
G + TD E LK +K G G + + DK +V P
Sbjct: 63 GFAFTDEPSRLGEMALKAIKMT-----------GSLRGDVQVGSGAPSVDKTMVRSSRPP 111
Query: 125 EYVERAINAALEEGAKRVAGVLYTDHDKIYLTTSNGVE-----AF--DEGTGIEIS---V 174
V A L A A V D + TT + V+ AF EG+ IE++ V
Sbjct: 112 SDVPAAEKRELVSDAHHAASV-----DGVVSTTVSYVDMESSSAFLNSEGSLIEMAETRV 166
Query: 175 RAFIGDLES-------GH----GTNSVRVLKKFDPESAGRKAGEIAKMARNPEQGPEGKF 223
F+ + S GH GT +L++ D E GR+ GE A P G+F
Sbjct: 167 ALFLNAVASDGSGIQFGHKSCGGTGGFEILEREDIEELGRRTGEKAVRLLKASPPPSGRF 226
Query: 224 DVIFDP-LAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGT 282
D++ DP L + +G A A + G S KL +K+ASE VTI D + +G+G+
Sbjct: 227 DIVTDPELTGVFIHEALGHAAEADLILQGDSILEGKLGEKIASEGVTIIDDPTI-DGFGS 285
Query: 283 RKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAGLI-----SPRAWNIVLE 337
+D EGV ETVL+E G L + L + A K G E + NA R N L+
Sbjct: 286 YSYDAEGVRAAETVLVENGVLTSLLNSRETAFKLGLEPSGNARSAIGDQPIVRMSNTYLK 345
Query: 338 PGDYTKDELFQEVKRGIYITNVWYTRFQNYMTG-DFSTIPRDGIFLIENGEL-KPIRNIR 395
PGD + DEL ++++ G+Y+ +R TG F I++GE+ +P++++
Sbjct: 346 PGDLSFDELIEDIRNGVYLRG---SRGGQVDTGKGIFQFNAAESFRIQDGEIAEPVKDVS 402
Query: 396 VSDNMLRILQNIVGL 410
+S N+L L+N+ G+
Sbjct: 403 LSGNVLETLKNVDGV 417
>gb|AAD53904.1|AF176314_14 (AF176314) PmbA [Zymomonas mobilis]
Length = 448
Score = 110 bits (272), Expect = 4e-23
Identities = 105/408 (25%), Positives = 182/408 (43%), Gaps = 33/408 (8%)
Query: 22 DVVVLSYETNRRQIRFANNEVTVAKHWNERKVELFVEWEKRIAGTSITDLTEENIERTLK 81
DVV + ++ +R E E + LF+ R A S +D ++E ++ ++
Sbjct: 27 DVVFVQGQSQDISVRLGQLEDVGRSEGAEIGLRLFIG--HRSASVSSSDFSKEALDALVE 84
Query: 82 TLKANLEKMKPREDYYGIAEGPFKYEDI-PETFDKAIVELDDPSEY---VERAINAALEE 137
A + + P + + G+A + PE +E DD E V R + E+
Sbjct: 85 RAVA-MAREAPEDRWAGLAPKELLMQGTAPE------IESDDGKEIAPAVLRELALKAED 137
Query: 138 GAKRVAGVLYTDHDK-------IYLTTSNGVEAFDEGTGIEISVRAFIG---DLESGHGT 187
A+ V G+ ++ L TS G + S G +++ +
Sbjct: 138 AARSVDGITNSEGASASAGRTIFALATSEGFTRGSSSSSYGCSACVIAGQGVNMQRDYDF 197
Query: 188 NSVRVLKKFDP-ESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAFANLLSYMGWAFSAF 246
++ R + D E G +A E NP + G+ +IFDP + LSY+ S
Sbjct: 198 HATRYFEDLDAAELIGTRAAERTIARLNPTRIDSGQMPIIFDPRVGSGFLSYLIQGISGG 257
Query: 247 AVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRETVLIERGTLKTY 306
A+ S+ + L + V +E +TIK+ G +R FD EG+PT+ +I++G L +
Sbjct: 258 AITRKTSFLLDSLGKPVFNEGITIKEDPWRKRGIASRAFDGEGLPTKPNNIIDKGRLNGW 317
Query: 307 LFNTSLAKKYGKETTANA-----GLISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVWY 361
L +++ A++ G T +A G S N+ LE G T +EL ++K GIY+T +
Sbjct: 318 LLDSAAARQLGMTPTGHARRGVGGPPSTGTANLYLEAGKVTPEELMSDIKLGIYVTEMIG 377
Query: 362 TRFQNYMTGDFSTIPRDGIFLIENGEL-KPIRNIRVSDNMLRILQNIV 408
+ N +TGD+S F+I +G+L +P+ I V+ N+ I +V
Sbjct: 378 SGV-NMITGDYSRGASG--FIIRDGQLAEPVAEITVAGNLKDIFMQMV 422
>pir||D72342 tldD protein - Thermotoga maritima (strain MSB8)
>gi|4981251|gb|AAD35808.1|AE001743_10 (AE001743) tldD
protein [Thermotoga maritima]
Length = 499
Score = 109 bits (271), Expect = 5e-23
Identities = 103/342 (30%), Positives = 155/342 (45%), Gaps = 36/342 (10%)
Query: 98 GIAEGPFKYEDIPETFDK-------------AIVELDDPSEYVERAINAA--LEEGAKRV 142
G A G K ED+ F++ A VE D +++A AA E K+V
Sbjct: 120 GEALGETKVEDLTFNFNRTKRKERHVVLIPPAQVEKTDKVSVMKKAYYAAKNYSELIKQV 179
Query: 143 AGVLYTDHDK-IYLTTSNGVEAFDEGTGIEISVRAFI---GDLESG-HGTNS---VRVLK 194
V Y D+D+ I + S G A D + + A G LE G +G +
Sbjct: 180 V-VWYWDYDQEILVANSEGTWAEDRRVRTRLMINAVAEKDGVLERGFYGPGAGMGFEFFD 238
Query: 195 KFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAFANLLSY--MGWAFSAFAVEAGF 252
+ D E A +KA IA E P GK V+ F ++ + +G A +V G
Sbjct: 239 RIDVEEAAKKAARIAARMVEAEPAPAGKMTVVIAN-GFGGVIFHEAVGHGLEATSVAKGA 297
Query: 253 SYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSL 312
S FA KL QKVA+E V+ D +PNG+G+ DDEG PT+ T+LI++G L YL +
Sbjct: 298 SVFAGKLGQKVAAECVSAVDDATIPNGWGSANVDDEGTPTQRTLLIDKGVLVGYLVDKLG 357
Query: 313 AKKYGKETTANAGL------ISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVWYTRFQN 366
++ G ++T + + R N + PGDY +E+ + G+Y + N
Sbjct: 358 ERRMGMKSTGSGRRQDYTFPPTSRMSNTFILPGDYHPEEIIAATEYGLYAKTMGGGSV-N 416
Query: 367 YMTGDFSTIPRDGIFLIENGEL-KPIRNIRVSDNMLRILQNI 407
TG+F+ + +LIE G + KP+R + I+Q I
Sbjct: 417 PATGEFNFAVSEA-YLIEKGRITKPVRGATLIGKGHEIIQKI 457
>pir||D64424 tldD homolog MJ0996 - Methanococcus jannaschii
Length = 451
Score = 107 bits (264), Expect = 3e-22
Identities = 76/206 (36%), Positives = 113/206 (53%), Gaps = 17/206 (8%)
Query: 219 PEGKFDVIFDP-LAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLP 277
P+GKF VI DP LA + +G A A V S F +KL ++V SE VT+ D +
Sbjct: 221 PKGKFKVILDPELAGVFIHEAVGHASEADLVLQNDSVFKDKLGERVGSEYVTVIDDATIE 280
Query: 278 NGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANA---GLISP--RAW 332
+G+ K+DDEGV ++TV+IE G LKTYL + A + E T N GL P R
Sbjct: 281 GAFGSYKYDDEGVEGKKTVIIENGILKTYLHSRETAGRMDAELTGNGRAEGLNKPIVRMS 340
Query: 333 NIVLEPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTG----DFSTIPRDGIFLIENGEL 388
N ++PGD++ +EL ++ K GI++ +R TG FS + +LIENGEL
Sbjct: 341 NTFIKPGDWSFEELLEDTKEGIFLKG---SRGGQVDTGKGLFQFSAVE---AYLIENGEL 394
Query: 389 -KPIRNIRVSDNMLRILQNIVGLTKE 413
+ +++ +S +L IL + +TK+
Sbjct: 395 TQVLKDAGLSGEILDILFKVDAVTKD 420
>sp|Q58403|Y996_METJA HYPOTHETICAL PROTEIN MJ0996 >gi|2826357|gb|AAB99001.1| (U67542)
conserved hypothetical protein [Methanococcus
jannaschii]
Length = 451
Score = 107 bits (264), Expect = 3e-22
Identities = 76/206 (36%), Positives = 113/206 (53%), Gaps = 17/206 (8%)
Query: 219 PEGKFDVIFDP-LAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLP 277
P+GKF VI DP LA + +G A A V S F +KL ++V SE VT+ D +
Sbjct: 221 PKGKFKVILDPELAGVFIHEAVGHASEADLVLQNDSVFKDKLGERVGSEYVTVIDDATIE 280
Query: 278 NGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANA---GLISP--RAW 332
+G+ K+DDEGV ++TV+IE G LKTYL + A + E T N GL P R
Sbjct: 281 GAFGSYKYDDEGVEGKKTVIIENGILKTYLHSRETAGRMDAELTGNGRAEGLNKPIVRMS 340
Query: 333 NIVLEPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTG----DFSTIPRDGIFLIENGEL 388
N ++PGD++ +EL ++ K GI++ +R TG FS + +LIENGEL
Sbjct: 341 NTFIKPGDWSFEELLEDTKEGIFLKG---SRGGQVDTGKGLFQFSAVE---AYLIENGEL 394
Query: 389 -KPIRNIRVSDNMLRILQNIVGLTKE 413
+ +++ +S +L IL + +TK+
Sbjct: 395 TQVLKDAGLSGEILDILFKVDAVTKD 420
>pir||B75180 antibiotic/peptide maturation related protein PAB1956 - Pyrococcus
abyssi (strain Orsay) >gi|5458031|emb|CAB49521.1|
(AJ248284) ANTIBIOTIC/PEPTIDE MATURATION related protein
[Pyrococcus abyssi]
Length = 448
Score = 106 bits (261), Expect = 7e-22
Identities = 110/452 (24%), Positives = 197/452 (43%), Gaps = 22/452 (4%)
Query: 1 MVEMFDVNELILKKAKELGFGDVVVLSYETNRRQIRFANNEVTVAKHWNERKVELFVEWE 60
M E+ ++ ELI K E F ++ ++ + ++ NE+++ E+ + +
Sbjct: 1 MDEVGEMEELI--KYGEKFFDELEIVVRRSRGIEVNVELNEISMGATRIEKVTIIRGIKD 58
Query: 61 KRIAGTSITDLTEENIERTLKTLKANLEKMKPREDYYGIAEGPFKYEDIPETF-DKAIVE 119
KR+ I ++E +++ ++ A + K+ ++ + P KY + P+ D V
Sbjct: 59 KRVGIAIIDTDSKEEVKKAIEEA-AKMAKLNTPDEKWSSLPSPGKYREKPKVSEDLKSVS 117
Query: 120 LDDPSEYVERAINAALEE--GAKRVAGVLYTDHDKIYLTTSNGVEAFDEGTGIEISVRAF 177
+ E+V R I A E G T ++ + S G+ E I F
Sbjct: 118 TETLVEFVTRGIKLARESDPNVTVAGGSAGTSWAEVEIFNSQGINVSQEFGSAHIFFE-F 176
Query: 178 IGDLES----GHGTNSVRVLKKFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAFA 233
+G E G + + D E + E K A N ++ + VIF P A +
Sbjct: 177 VGKKEGVVTPGIFDFDAKDNLELDVEGVVNRGLERVKWAYNVKEAKNEETTVIFGPWAIS 236
Query: 234 NLLSYMGW-AFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPT 292
LLSY + AFS + + A+K+ +KVAS+V+TI D D EGVPT
Sbjct: 237 GLLSYALFPAFSGERLVKKTTPLADKVGEKVASDVITIYDDTFHELSIAKAIADGEGVPT 296
Query: 293 RETVLIERGTLKTYLFNTSLAKKYGKETTAN------AGLISPRAWNIVLEPGDYTKDEL 346
R+ LIE G K ++++ AK YG E+T + G +S + V+E G E+
Sbjct: 297 RKVTLIEEGIFKGFIWDNYWAKVYGTESTGHGQRDWRGGGVSIGLNSAVIENGKRELSEI 356
Query: 347 FQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGELKPIRNIRVSDNMLRILQN 406
E+K G + + N G+F+ + + +LIE+GE+ ++ N+ +L+
Sbjct: 357 IGEIKHGYLVEGLQGAHSSNPDNGNFA-VTANPAYLIEDGEVVGSTVFLIAGNVYELLKQ 415
Query: 407 IVGLTKESHHVHWWEVSRPVTTPYVLVKEVGI 438
++K+ + + + TPY+ + V I
Sbjct: 416 ATEVSKDQRALPFMTTA---ITPYIKFENVKI 444
>pir||G70473 tldD homolog - Aquifex aeolicus >gi|2984257|gb|AAC07784.1|
(AE000768) TldD protein [Aquifex aeolicus]
Length = 404
Score = 103 bits (254), Expect = 5e-21
Identities = 85/286 (29%), Positives = 131/286 (45%), Gaps = 19/286 (6%)
Query: 124 SEYVERAINAALEEG--AKRVAGVLYTDHDKIYLTTSNGVEAFDEGTGIEISVRAFIGD- 180
+E + RA A G K+V VL +I + + G A D + V D
Sbjct: 116 AEILRRADEKARSFGDKIKQVLAVLMDKTREIMVINTLGETAEDTQKRVVFFVEVVASDG 175
Query: 181 ------LESGHGTNSVRVLKKFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAFAN 234
ES G + + PE KA + A + + + P G F V+ A
Sbjct: 176 ETLQRGYESLGGRRGFEIFNETPPEVIAEKAAKRALLMLSAKPAPAGTFTVVMSSQAGGT 235
Query: 235 LL-SYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTR 293
++ +G A V+ G S +A KL +KVASE+VT+ D LP G+ DDEGVP +
Sbjct: 236 MIHEAVGHGLEADLVQQGLSVYAGKLGEKVASELVTVIDDATLPYHNGSFTVDDEGVPAQ 295
Query: 294 ETVLIERGTLKTYLFNTSLAKKYGKETTAN------AGLISPRAWNIVLEPGDYTKDELF 347
VLI+ G L Y+++ A K G E+T N A + R N ++ G +++
Sbjct: 296 RKVLIKDGVLVGYMYDRLRAMKDGVESTGNGRRQSYAHIPIVRMTNTFIDKGQDNPEDII 355
Query: 348 QEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGELK-PIR 392
++ K+G+ + + N +TGDF +G ++IENGE+ PIR
Sbjct: 356 KDTKKGVLVVKMGGGEV-NTVTGDFVFEVMEG-YMIENGEITYPIR 399
>sp|Q57684|Y231_METJA HYPOTHETICAL PROTEIN MJ0231 >gi|2128001|pir||H64328 hypothetical
protein MJ0231 - Methanococcus jannaschii
>gi|1590966|gb|AAB98219.1| (U67479) pmbA protein (pmbA)
[Methanococcus jannaschii]
Length = 416
Score = 101 bits (250), Expect = 1e-20
Identities = 91/327 (27%), Positives = 158/327 (47%), Gaps = 21/327 (6%)
Query: 94 EDYYGIAEGPFKYEDIPETFDKAIVELDDPS--EYVERAINAALEEGAKRVAGVLYTDHD 151
ED Y P KY++ F K I++LD+ E + + AL+ A ++G + +
Sbjct: 79 EDKYTEFAHPQKYKEPKGMFYKEILDLDEEKLLEDLITMRDIALDNNAIVLSGGVSKEVG 138
Query: 152 KIYLTTSNGVEAFDEGTGIEISVRAFIGDLESGHGTNSVRVLKKFDPESAGRKAGEIAKM 211
L SNGV+ ++ T ++ + + D E+ + + + FD E +A ++AK
Sbjct: 139 YARLINSNGVDVEEQDTYFSAAI-SIMYDGETSYECRTRHNI--FDVEEISYRALDLAKK 195
Query: 212 ARNPEQGPEGKFDVIFDPLAFANLLSY-MGWAFSAFAVEAGFSYFANKLDQKVASEVVTI 270
+ N + K +++ P A +LLSY + AFSA V+ S K+ +++ E +TI
Sbjct: 196 SANGK-AISYKGNIVLSPRALYDLLSYTLMPAFSAENVQRDRSVLKGKIGEQIFGENITI 254
Query: 271 KDIGNLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAG----- 325
D G L + K D EG T++TVL+E G LK YL++ A + GK +T NA
Sbjct: 255 IDDGTLDYALYSSKCDGEGTATQKTVLVENGVLKNYLYDIKRANREGKTSTGNASRGYRS 314
Query: 326 --LISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLI 383
+SP N +++ TK+ L + +YI V + N +TGDF+ + +
Sbjct: 315 LPYVSPT--NFIIKE---TKNSL-DDFDEYVYINGVIGSHTSNPITGDFA-VEIQNSYYY 367
Query: 384 ENGELKPIRNIRVSDNMLRILQNIVGL 410
+NG++ PI+ N+ + + + L
Sbjct: 368 KNGKIIPIKRGMFGGNIFEMFKEAIPL 394
>pir||G75033 hypothetical protein PAB1547 - Pyrococcus abyssi (strain Orsay)
>gi|5458677|emb|CAB50164.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 473
Score = 101 bits (248), Expect = 2e-20
Identities = 111/425 (26%), Positives = 187/425 (43%), Gaps = 52/425 (12%)
Query: 4 MFDVNELILKKAKELGFGDVVVLSYETNRRQIRFANNEVTVAKHWNERKVELFVEWEKRI 63
M D+ E ++KA ELG E + N + ++R + + V + +
Sbjct: 1 MHDLLEFAVEKALELGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGM 60
Query: 64 AGTSITDLTEENIERTL-KTLKANLEKMKPREDYYGIAEGPFK--YEDIPETFDKAIVEL 120
S LT+E+I T+ + +K K R++ ++ F Y ++ D V
Sbjct: 61 GFASTNILTKESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPP 120
Query: 121 DDPSEYVERAINAALEEGAKRVAGVL-YTDH--DKIYLTTSNGVE--------------A 163
++ E +++ L K L Y+DH KI++ + N V
Sbjct: 121 EEKLELLKKIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVV 180
Query: 164 FDEGTGIEISV--RAFIGDLESGHGTNSVRVLKKFDP-ESAGRKAGEIAKMARNPEQGPE 220
++EG + RAF G LE +++K +P E A ++ + ++ ++ PE
Sbjct: 181 YEEGQMEQAPFVSRAFSGGLE---------LIEKDEPWERAKKEVETLKRIITEGKKPPE 231
Query: 221 GKFDVIFDP-LAFANLLSYMGWAFSAF------AVEAGFSYFA-NKLDQKVASEVVTIKD 272
GK D++ P +A + +G + A +AG S+ + L +++ SEVVT+ D
Sbjct: 232 GKVDLVISPEVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVID 291
Query: 273 IGNLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAGLIS---- 328
+PN +G +DDEGV R LI G + +L N A K G + A A I+
Sbjct: 292 DPTIPNSWGFYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNRE 351
Query: 329 --PRAWNIVLEPGDYTKDELFQEVKRGIYIT--NVWYTRFQNYMTGDFSTIPRDGIFLIE 384
R N L PGDY+ +EL +++K G+Y+ N W + Y I R+ +LIE
Sbjct: 352 PIVRMANTYLAPGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQ---RYIGREA-YLIE 407
Query: 385 NGELK 389
NGE+K
Sbjct: 408 NGEIK 412
>pir||D71135 tldD-related protein PH0848 - Pyrococcus horikoshii
>gi|3257259|dbj|BAA29942.1| (AP000003) 481aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 481
Score = 100 bits (247), Expect = 3e-20
Identities = 108/419 (25%), Positives = 186/419 (43%), Gaps = 34/419 (8%)
Query: 1 MVEMFDVNELILKKAKELGFGDVVVLSYETNRRQIRFANNEVTVAKHWNERKVELFVEWE 60
+V M D+ E ++ A ELG E + N + +++ + + V
Sbjct: 6 VVYMHDLLEFAIENALELGASYAEARFEEKQGISLAMKNGIPEGMEILSDKGIGVRVLVN 65
Query: 61 KRIAGTSITDLTEENIERTLK-TLKANLEKMKPREDYYGIAEGPFK--YEDIPETFDKAI 117
+ S LT+E+I T+K +K K R++ +E F Y ++ D
Sbjct: 66 GGMGFASTNVLTKESIAETVKRAVKLAKAASKLRKEPITFSEEDFHNVYYEVKMKKDFRD 125
Query: 118 VELDDPSEYVERAINAALEEGAK-RVAGVLYTDH--DKIYLTTSNG-VEAFDEGTGIEIS 173
V ++ E +++ + + Y+DH K+++ + N +E+ + +
Sbjct: 126 VSPEEKLELLKKIEEEVTSTNVNVPMRYIAYSDHVWHKVFMNSENAKIESLIPRVSVMYN 185
Query: 174 VRAFI-GDLESGHG-----TNSVRVLKKFDP-ESAGRKAGEIAKMARNPEQGPEGKFDVI 226
+ F G +E + + +++K +P E A R+ + K+ ++ PEGK DVI
Sbjct: 186 LVVFENGQMEQAPFIQRAFSGGLELIEKDEPWERAKREVETLRKIITEGKRSPEGKVDVI 245
Query: 227 FDP-LAFANLLSYMGWAFSAF------AVEAGFSYFANK-LDQKVASEVVTIKDIGNLPN 278
P +A + +G + A +AG S+ + L +++ SEVVT+ D +PN
Sbjct: 246 ISPEVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPEMLGERIGSEVVTVIDDPTIPN 305
Query: 279 GYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAGLIS------PRAW 332
+G +DDEGV R LI G + +L N A K G + A A I+ R
Sbjct: 306 SWGFYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMA 365
Query: 333 NIVLEPGDYTKDELFQEVKRGIYIT--NVWYTRFQNYMTGDFSTIPRDGIFLIENGELK 389
N L PGDY+ +EL ++VK G+Y+ N W + Y I R+ +LIENGE+K
Sbjct: 366 NTYLAPGDYSFEELIEDVKLGVYMVSFNEWNIDDRRYQQ---RYIGREA-YLIENGEIK 420
>pir||D81151 pmbA protein NMB0839 [imported] - Neisseria meningitidis (group B
strain MD58) >gi|7226074|gb|AAF41250.1| (AE002437) pmbA
protein [Neisseria meningitidis MC58]
Length = 443
Score = 98.7 bits (242), Expect = 1e-19
Identities = 93/423 (21%), Positives = 185/423 (42%), Gaps = 20/423 (4%)
Query: 3 EMFDVNELILKKAKELGFGDVVVLSYETNRRQIRFANNEVTVAKHWNERKVELFVEWEKR 62
E+ D+ L AK G E+ + + E+ + ++ +++ V KR
Sbjct: 9 ELLDLCRRTLDLAKATGATAAEADFSESLGQSVSVRLGEIEQIEFQQDKSLDITVYVGKR 68
Query: 63 IAGTSITDLTEENIERTLKTLKANLEKMKPREDYYGIAEGPFKYEDI--PETFDKAIVEL 120
S D +E+ ++ T+K ++ + + G+A+ + I P+ + + ++
Sbjct: 69 KGRASTADFSEKALQDTVKAA-IDIARHTAEDGCAGLADACLMAKHIGDPDLYHEWDLDT 127
Query: 121 DDPSEYVERAINAALEEGAK---RVAGVLYTDHDKIYLTTSNGVEAFDEGTGIEISVRAF 177
+ ++ AAL E + + T H + ++G A +GT IS
Sbjct: 128 EAAVGLAKQCEQAALNEDERIENSEGAAVQTGHYQYVYGNTHGFAAHRQGTHHSISCSVV 187
Query: 178 IGDLESGHGTN-----SVRVLKKFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAF 232
D E+G + + R PE+ G+ A P G + V+FD
Sbjct: 188 AAD-ENGMQRDYWYDSACRHPDMDSPETIGQTAARRTLRRLGSRSIPTGSYPVLFDTTVS 246
Query: 233 ANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPT 292
L+ ++ A S A+ S+ + + +KV + + +++ ++P + + FD EGV T
Sbjct: 247 GGLIGHLVGALSGGALYRQSSFLIDSIGKKVLPDFLNLREEPHIPRSFRSSYFDAEGVAT 306
Query: 293 RETVLIERGTLKTYLFNTSLAKKYGKETTANAGLISPRAWNIVLEPGDYTKDELFQEVKR 352
+I+ G ++ Y ++ A+K G +TT NAG A N+ L T+ +L +E+
Sbjct: 307 APRFVIQNGIVEGYFLSSYSARKLGMQTTGNAG----GAHNLYLNHTHETQSDLLKEMGT 362
Query: 353 GIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGELK-PIRNIRVSDNMLRILQNIVGLT 411
G+ +T + + N +TGD+S F +ENG + P+ I V+ + + ++IVG+
Sbjct: 363 GLLVTEL-MGQGANTITGDYSRGAAG--FWVENGVIAYPVHEITVAGRLQDMYRDIVGVA 419
Query: 412 KES 414
++
Sbjct: 420 DDA 422
>pir||F71033 hypothetical protein PH1558 - Pyrococcus horikoshii
>gi|3257987|dbj|BAA30670.1| (AP000006) 445aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 445
Score = 94.8 bits (232), Expect = 2e-18
Identities = 106/450 (23%), Positives = 195/450 (42%), Gaps = 39/450 (8%)
Query: 5 FDVNELILKKAKELGFG-DVVVLSYETNRRQIRFANNEVTVAKHWNERKVELFVEWEKRI 63
FD E++ +A+E+G ++ +S T R + +T+ + + ++
Sbjct: 15 FDELEIVTYRAREIGLEVELNEISMGTTRM------STITIVRGIKDNRI---------- 58
Query: 64 AGTSITDL-TEENIERTLKTLKANLEKMKPREDYYGIAEGPFKYEDIPETFDKAI-VELD 121
G SI D ++E++++ ++ A + ++ +D + P KY + P+ ++ +
Sbjct: 59 -GISIVDNDSKEDVKKAIEEA-AKMARLNNPDDKWKSLPEPGKYREKPKVNEELKEASTE 116
Query: 122 DPSEYVERAINAALEE--GAKRVAGVLYTDHDKIYLTTSNGVEAFDEGTGIEISVRAFIG 179
+ V + I A E G + + S+GV E + F+G
Sbjct: 117 TLASMVIKGIQLARESDPNVTVAGGSAGASWSEFSIANSHGVNVTQEYGHAHVFFE-FVG 175
Query: 180 DLES----GHGTNSVRVLKKFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAFANL 235
E G ++ D ES + E K A ++ + VIF P A + L
Sbjct: 176 KKEGVVTPGIFEFDIKDNLNLDVESIVNRGIERVKWAYKVKEAKNEEAPVIFSPWAISGL 235
Query: 236 LSYMGW-AFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRE 294
Y + AFS + + A+K+ +K+AS+V+TI D D EGVPTR+
Sbjct: 236 FHYALFPAFSGERLIKKTTPLADKVGEKIASDVITIYDDTFHELSVVKAIADGEGVPTRK 295
Query: 295 TVLIERGTLKTYLFNTSLAKKYGKETTAN------AGLISPRAWNIVLEPGDYTKDELFQ 348
T+LIE G K ++++ AK YG E+T + G ++ + V+E G + +E+ Q
Sbjct: 296 TMLIENGVFKGFIWDNYWAKVYGTESTGHGQRDWRGGGVTIGLNSAVIENGKRSLEEMIQ 355
Query: 349 EVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGELKPIRNIRVSDNMLRILQNIV 408
++K G + V N G+F+ I + +LIE+GE+ V+ N+ +L+
Sbjct: 356 DIKHGYLVEGVQGAHSSNPDNGNFA-ISANPAYLIEDGEIAGSTVFLVASNIYELLKQAS 414
Query: 409 GLTKESHHVHWWEVSRPVTTPYVLVKEVGI 438
++KE + V PY+ + V I
Sbjct: 415 EVSKEQRAM---PAMFTVVAPYIKFENVRI 441
>pir||H81869 hypothetical protein NMA1048 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379746|emb|CAB84314.1|
(AL162755) hypothetical protein NMA1048 [Neisseria
meningitidis Z2491]
Length = 443
Score = 94.4 bits (231), Expect = 2e-18
Identities = 91/423 (21%), Positives = 182/423 (42%), Gaps = 20/423 (4%)
Query: 3 EMFDVNELILKKAKELGFGDVVVLSYETNRRQIRFANNEVTVAKHWNERKVELFVEWEKR 62
E+ D+ L AK G E+ + + E+ + ++ +++ V KR
Sbjct: 9 ELLDLCRRTLDLAKATGATAAEADFSESLGQSVSVRLGEIEQIEFQQDKSLDITVYVGKR 68
Query: 63 IAGTSITDLTEENIERTLKTLKANLEKMKPREDYYGIAEGPFKYEDI--PETFDKAIVEL 120
D +E+ + T++ A++ + + G+A+ + I P+ + + ++
Sbjct: 69 KGRAGTADFSEQALRDTVRAA-ADIARHTAEDGCAGLADPELMAQHIGDPDLYHEWDLDT 127
Query: 121 DDPSEYVERAINAALEEGAK---RVAGVLYTDHDKIYLTTSNGVEAFDEGTGIEISVRAF 177
+ ++ AAL E + + T H + + G A + T IS
Sbjct: 128 EAAVGLAKQCEQAALNEDERIENSEGAAVQTGHYQYVYGNTYGFAAHRQSTHHSISCSVV 187
Query: 178 IGDLESGHGTN-----SVRVLKKFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAF 232
D E+G + + R PE+ G+ A P G + V+FD
Sbjct: 188 AAD-ENGMQRDYWYDSACRHPDMDSPETIGQTAARRTLRRLGSRSIPTGNYPVLFDTTVS 246
Query: 233 ANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPT 292
L+ ++ A S A+ S+ + + +KV + + +++ ++P + + FD EGV T
Sbjct: 247 GGLIGHLVGALSGGALYRQSSFLIDSIGKKVLPDFLNLREEPHIPRSFRSSYFDAEGVAT 306
Query: 293 RETVLIERGTLKTYLFNTSLAKKYGKETTANAGLISPRAWNIVLEPGDYTKDELFQEVKR 352
+I+ G ++ Y ++ A+K G +TT NAG A N+ L T+ +L +E+
Sbjct: 307 APRFVIQNGIVEGYFLSSYSARKLGMQTTGNAG----GAHNLYLNHTHETQSDLLKEMGT 362
Query: 353 GIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGELK-PIRNIRVSDNMLRILQNIVGLT 411
G+ +T + + N +TGD+S F +ENG + P+ I V+ + + ++IVG+
Sbjct: 363 GLLVTEL-MGQGANTITGDYSRGAAG--FWVENGVIAYPVHEITVAGRLQDMYRDIVGVA 419
Query: 412 KES 414
++
Sbjct: 420 DDA 422
>pir||G71248 tldD homolog PH0246 - Pyrococcus horikoshii
>gi|3256635|dbj|BAA29318.1| (AP000001) 504aa long
hypothetical tldd protein [Pyrococcus horikoshii]
Length = 504
Score = 93.6 bits (229), Expect = 4e-18
Identities = 73/247 (29%), Positives = 119/247 (47%), Gaps = 14/247 (5%)
Query: 173 SVRAFIGDLE----SGHGTNSVRVLKKFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFD 228
SV F G ++ S GT +++K D E + A + P G+ VI D
Sbjct: 220 SVAKFSGKMQTYWKSFGGTGGWEIVEKIDFEHWANFVSKKAVSLLSARSPPSGEMQVIMD 279
Query: 229 P-LAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDD 287
P LA + +G A A AV+ S A L +++A E +T+ D LP +G+ +DD
Sbjct: 280 PELAGVFIHEALGHASEADAVKQEESILAGMLGKRIAVEELTVVDDPTLPGKFGSYIYDD 339
Query: 288 EGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAGLIS------PRAWNIVLEPGDY 341
EG+P + +I G L YL + + E + S R N +EPGD+
Sbjct: 340 EGIPGKRVEIIRDGVLVNYLNDRETSSLLNLEPNGHGRAQSYSHVPLVRMSNTYIEPGDW 399
Query: 342 TKDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGELK-PIRNIRVSDNM 400
+E+ EVK G+Y+ + + +G+F ++G +L+ENGE+K +R++ +S N+
Sbjct: 400 RFEEILDEVKFGVYMIGDKGGQV-DVASGNFMFAAKEG-YLVENGEIKGHLRDVALSGNI 457
Query: 401 LRILQNI 407
L L+ I
Sbjct: 458 LSALREI 464
>pir||E70461 pmbA protein - Aquifex aeolicus >gi|2984159|gb|AAC07693.1|
(AE000761) peptide maturation [Aquifex aeolicus]
Length = 441
Score = 91.3 bits (223), Expect = 2e-17
Identities = 106/414 (25%), Positives = 181/414 (43%), Gaps = 20/414 (4%)
Query: 9 ELILKKAKELGFGDVVVLSYETNRRQIRFANNEVTVAKHWNERKVELFVEWEKRIAGTSI 68
E ++KK + G+ + V + +I +N +V ER + + V +KR+ +
Sbjct: 5 ENLVKKYIKPGY-EYEVFFERVKKLKIEVSNEQVENVSSSEERGIGIRVLKDKRLGFSYT 63
Query: 69 TDLTEENIERTLKTLKANLEKMKPREDYYGIAE-GPFKYEDIPETFDKAIVELDDPSEYV 127
+ L EE I+ T++ E +P E I + P K + + + + L + E
Sbjct: 64 SFLGEEEIKDTVEKAMEMCEIQEPDEANGFIEKLKPSKAVSVYDE-ESLSIPLQEKMEIP 122
Query: 128 ERAINAALEEGAKRVAGVLYTDHDKIYLTT----SNGVEAFDEGTGIEISVRAFIG---- 179
+ A +E KR+ GV + ++ S GVE GT S+ A +G
Sbjct: 123 VKMEKYA-KELDKRIVGVRKSTLTEVEFEVRSFNSFGVEFGYRGTSYT-SMIATLGTEND 180
Query: 180 DLESGHGTNSVRVLKKFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAFANLLSYM 239
D R LK + +S A +P V+F +FA LL
Sbjct: 181 DSAISWEFRGARRLKNLNWKSMVEDAVFKTVNLLHPSPFETRSMPVVFFRESFAMLLDAF 240
Query: 240 GWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRETVLIE 299
F + G + +K+++ VASE +T+ D G++ G+ T +D EGVPTR+ +LI+
Sbjct: 241 SPMFLGDYLVKGKTLLKDKVNEIVASEKITLVDDGSMEEGFSTFPYDAEGVPTRKNLLID 300
Query: 300 RGTLKTYLFNTSLAKKYGKETTANA------GLISPRAWNIVLEPGDYTKDELFQEVKRG 353
+G K +L + A+K +E T N+ L S N LE G+ + +EL
Sbjct: 301 KGVFKGFLHSLYTARKSSQEPTGNSVRGSYKELPSSGTTNFYLEKGNLSFEELLSYYDEV 360
Query: 354 IYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGELKPIRNIRVSDNMLRILQNI 407
+ V + ++GDFS + GI + + K +R I V+ N+L +L+N+
Sbjct: 361 FLVLEVMGLHTVDTISGDFS-LGCSGILYKKGKKDKTVRGITVAGNILDLLKNV 413
>pir||D82066 pmbA protein VC2535 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9657118|gb|AAF95676.1| (AE004322) pmbA
protein [Vibrio cholerae]
Length = 447
Score = 89.7 bits (219), Expect = 6e-17
Identities = 95/365 (26%), Positives = 164/365 (44%), Gaps = 27/365 (7%)
Query: 61 KRIAGTSITDLTEENIERTLKTLKANLEKMKPREDYYGIAEGPFKYEDIPETFDKAIVEL 120
+R S +DL+E+ I +T+ ++ + + Y G A ++IP D +
Sbjct: 70 QRKGSASTSDLSEKAIRQTVLAA-LDIAQYTSADPYAGPAPKELMVQEIP---DLDLFHP 125
Query: 121 DDPSEYVERAINAALEEGA-------KRVAGVLYTDHDKIYLT-TSNGVEAFDEGTGIEI 172
D+P+ V I A E A K+ G Y H + + S+G+ A + I
Sbjct: 126 DEPNPDVAAQIAIAAERAALGYSKKIKQSDGGSYDSHYGVRVYGNSHGLLASYASSRHSI 185
Query: 173 SVRAFIGDLESGHGTN--SVRVLKKFD----PESAGRKAGEIAKMARNPEQGPEGKFDVI 226
S + IG+ +G S V + D PES G +A E +P++ G+F V+
Sbjct: 186 SC-SVIGEGRNGEMERDYSYTVARHRDDLWTPESVGLQAAENTVSRLDPQKLKTGQFPVM 244
Query: 227 FDPLAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFD 286
F L+ ++ A S + S+ + L + + I + ++ G + FD
Sbjct: 245 FAADVATGLIGHLVMAISGGNLYRKSSFLLDHLGKTILPTWFNISERPHVMRGLASSPFD 304
Query: 287 DEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAGLISPRAWNIVLEPGDYTKDEL 346
EGV T++ +I G L TYL + A+K T +AG I W + +Y ++
Sbjct: 305 SEGVRTQDLEIITDGVLATYLLTSYAARKMNMTPTGHAGGI--HNWYVKSTGQNY--QQM 360
Query: 347 FQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGELK-PIRNIRVSDNMLRILQ 405
+E+ G+ +T V + N +TGD+S F +ENGE+K P+ I ++ N+ ++LQ
Sbjct: 361 LKELGTGLLVTEV-MGQGVNVVTGDYSRGAAG--FWVENGEIKYPVSEITIAGNLKQMLQ 417
Query: 406 NIVGL 410
IV +
Sbjct: 418 QIVAV 422
>pir||A75213 tldd protein PAB0154 - Pyrococcus abyssi (strain Orsay)
>gi|5457661|emb|CAB49152.1| (AJ248283) TLDD PROTEIN
[Pyrococcus abyssi]
Length = 452
Score = 87.8 bits (214), Expect = 2e-16
Identities = 63/212 (29%), Positives = 115/212 (53%), Gaps = 17/212 (8%)
Query: 212 ARNPEQGPEGKFDVIFDP-LAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTI 270
AR+P P G+ +I DP LA + +G A A +V G S + + +K+ SE +T+
Sbjct: 214 ARSP---PSGEMPIIMDPELAGVFIHEALGHAVEADSVRQGESILSGMIGKKIGSEELTV 270
Query: 271 KDIGNLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKK-------YGK-ETTA 322
D LP +G+ +DDEG+P + +I+ G L YL + +K +G+ ++ A
Sbjct: 271 IDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYA 330
Query: 323 NAGLISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFL 382
+ L+ R N + PG++T +E+F+EVK G+Y+ + + G F ++G ++
Sbjct: 331 HVPLV--RMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQV-DIANGSFMFGAKEG-YI 386
Query: 383 IENGELK-PIRNIRVSDNMLRILQNIVGLTKE 413
I+ GE+K +R++ +S N+L L+ I + ++
Sbjct: 387 IKEGEIKEQVRDVGISGNILDTLKEIKAVGRD 418
>pir||B83086 PmbA protein PA4472 [imported] - Pseudomonas aeruginosa (strain
PAO1) >gi|9950709|gb|AAG07860.1|AE004861_1 (AE004861)
PmbA protein [Pseudomonas aeruginosa]
Length = 449
Score = 87.0 bits (212), Expect = 4e-16
Identities = 90/375 (24%), Positives = 157/375 (41%), Gaps = 28/375 (7%)
Query: 53 VELFVEWEKRIAGTSITDLTEENIERTLKTLKANLEKMKPREDYYGIAEGPFKYEDIPET 112
+ L+ K A TS T E I T+ A + + ++ G+A+ ++PE
Sbjct: 67 ITLYAGQRKGSASTSATG--EAAIRETVAAALA-IARHTSEDECAGLADAALMARELPE- 122
Query: 113 FDKAIVELDDPSEYVERAINAALEEGAKRVAGVLYTDHDKIYLTTSNGVEAFDEGTGI-- 170
D P + VERA+ E A A T D L T G + G
Sbjct: 123 LDLYHPWSLSPEQAVERALAC---EAAAFAADKRVTKADGTTLNTHQGCRVYGNSHGFIG 179
Query: 171 -EISVRAFIGDLESGHGTNSVRVLKKFD----------PESAGRKAGEIAKMARNPEQGP 219
S R + + G ++ +D ES GR+A E A
Sbjct: 180 GYASTRHSLSCVMIAEGEGQMQRDYWYDVNRRGEALASAESIGRRAAERAASRLGARPVQ 239
Query: 220 EGKFDVIFDPLAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNG 279
+ V+F P L + A S ++ S+ L Q++ E ++I + +L
Sbjct: 240 TAEVPVLFAPEIAVGLFGHFLGAISGGSLYRKSSFLEGALGQRLFPEWLSIDERPHLVGA 299
Query: 280 YGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAGLISPRAWNIVLEPG 339
G+ FD +G+ T +E G L +Y+ T +K G +TANAG + N+ + G
Sbjct: 300 LGSASFDSDGLATYAKPFVENGELVSYVLGTYSGRKLGLPSTANAGGVH----NLFVSHG 355
Query: 340 DYTKDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGELK-PIRNIRVSD 398
D + L + ++RG+ +T + + N +TGD+S + +ENGE++ P++ + ++
Sbjct: 356 DEDQAALIRRMERGLLVTEL-MGQGVNLVTGDYSRGAAG--YWVENGEIQFPVQEVTIAA 412
Query: 399 NMLRILQNIVGLTKE 413
N+ + + IV + K+
Sbjct: 413 NLRDLFRRIVAVGKD 427
>gi|11498263 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3123065|sp|O29602|Y655_ARCFU HYPOTHETICAL PROTEIN
AF0655 >gi|7429834|pir||G69331 conserved hypothetical
protein AF0655 - Archaeoglobus fulgidus
>gi|2649963|gb|AAB90585.1| (AE001059) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 425
Score = 86.2 bits (210), Expect = 7e-16
Identities = 68/195 (34%), Positives = 101/195 (50%), Gaps = 9/195 (4%)
Query: 219 PEGKFDVIFDP-LAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLP 277
P G+ V+ D LA + G A A V G + +L++KVA E VTI D LP
Sbjct: 196 PSGEMSVVMDSSLAGVFVHEAFGHAVEADHVLQGATVLKGRLNEKVADESVTIIDDPTLP 255
Query: 278 NGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYG--KETTANAGLISP--RAWN 333
+G FDDEGV + V++E G LK++L + AKK G + G+ P R N
Sbjct: 256 E-FGFFPFDDEGVRAEKKVIVEDGVLKSFLHSRETAKKLGGVAGNARSQGVDVPIVRMSN 314
Query: 334 IVLEPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGEL-KPIR 392
++ Y+ DEL +E + G+Y+ N TG F + G +LI+NGEL + +R
Sbjct: 315 TYIDTHHYSFDELLEECRDGVYLVGSRGGE-TNPATGYFHFNAQYG-YLIKNGELAEMVR 372
Query: 393 NIRVSDNMLRILQNI 407
++ +S N L IL+N+
Sbjct: 373 DVSLSGNTLEILRNV 387
>sp|P45077|PMBA_HAEIN PMBA PROTEIN HOMOLOG >gi|1075002|pir||C64186 pmbA protein -
Haemophilus influenzae (strain Rd KW20)
>gi|1574709|gb|AAC22807.1| (U32795) pmbA protein (pmbA)
[Haemophilus influenzae Rd]
Length = 451
Score = 85.4 bits (208), Expect = 1e-15
Identities = 91/389 (23%), Positives = 178/389 (45%), Gaps = 23/389 (5%)
Query: 41 EVTVAKHWNERKVELFVEWEKRIAGTSITDLTEENIERTLKTLKANLEKMKPREDYYGIA 100
E+ + N+ + + V ++ S +DL+E I+ ++ A + P +D G+A
Sbjct: 54 EIENVEFTNDGALGISVYMGQQKGNASTSDLSESAIKNAVEAALAIAKYTSP-DDCTGLA 112
Query: 101 EGPFKYEDIP--ETFDKAIVELDDPSEYVERAINAALEEGAKRVA--GVLYTDHD--KIY 154
+ D P E + A +++D +E +A AAL+ + + G + H K+Y
Sbjct: 113 DKDLMAFDAPDLELYHAADIDVDKATELALQAEQAALQADERIINSNGASFNSHTGVKVY 172
Query: 155 LTTSNGVEAF-DEGTGIEISVRAFIGD-LESGHGTNSVRVLKKFD-PESAGRKAGEIAKM 211
+ ++++ + SV + D LE+ + R K P G +
Sbjct: 173 GNSHGMLQSYLSSRYSLSCSVIGGVEDALENDYEYTISREFDKLQSPIWVGENCAKKVVS 232
Query: 212 ARNPEQGPEGKFDVIFDPLAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIK 271
NP++ + VIF ++S+ A S ++ S+ + L ++V + +I
Sbjct: 233 RLNPQKLSTREVPVIFLNDVATGIISHFAAAISGGSLYRKSSFLLDHLGKQVLPDWFSIS 292
Query: 272 DIGNLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAGLISPRA 331
+ +L + FD EGV T++ ++E G L+TYL + KK G +T +AG I
Sbjct: 293 ERPHLLRRLASTPFDSEGVRTQDREIVENGILQTYLVTSYSGKKLGMSSTGHAGGIH--- 349
Query: 332 WNIVLEP---GDYTKDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGEL 388
N +++P G T L +++ G+ +T+V + N +TGD+S F +ENGE+
Sbjct: 350 -NWLVKPNLTGGLT--ALLRQMGTGLLVTDV-MGQGVNIVTGDYSRGASG--FWVENGEI 403
Query: 389 K-PIRNIRVSDNMLRILQNIVGLTKESHH 416
+ P+ I ++ + +L+N++ + + H
Sbjct: 404 QYPVAEITIAGQLQDMLKNMLAVADDIEH 432
>pir||E71033 tldD-related protein PH1557 - Pyrococcus horikoshii
>gi|3257986|dbj|BAA30669.1| (AP000006) 458aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 458
Score = 84.3 bits (205), Expect = 3e-15
Identities = 105/443 (23%), Positives = 188/443 (41%), Gaps = 62/443 (13%)
Query: 9 ELILKKAKELGFGDVVVLSYETNRRQIRFANNEVTVAKHWNER-----KVELFVEWEKRI 63
E L+ A+E + + L YE +R + V V ++ E+ + + V
Sbjct: 8 EKALRWAEENIKAEYIELRYEDIKRTALNLKDGVFV--NFTEKLNRGVAIRVLVNGAWGF 65
Query: 64 AGTSITDLTEENIERTLKTLKA---------NLEKMKPREDYYGIAEGPFKYEDIPETFD 114
+ TS D EE I+ K K L ++KP ED+ K + P
Sbjct: 66 SSTSELDKVEEAIKEAYKLAKVASETKKEKIKLAEIKPVEDFV-----KSKMKIKPRE-- 118
Query: 115 KAIVELDDPSEYVERAINAALEEGAKRVAGVLYTDH--DKIYLTTSN------------G 160
V++++ +++ N E+ A + + Y D KI LT G
Sbjct: 119 ---VDIEEKINHLKELENLLKEDKAVKSVNIRYEDGGGQKILLTNEGTKIEWDYNYLWQG 175
Query: 161 VEAFDEGTGIEISVRAFIGDLESGHGTNSVRVLKKFDPESAGRKAGEIAKMARNPEQG-- 218
V + G R IG ++ G ++ + +P R I + + +G
Sbjct: 176 VYVTGKEDGKLAMARDTIGAVDYGW-----ELMTEKEPNEKVRD--RILRKLHSQLKGIT 228
Query: 219 -PEGKFDVIFDPLAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLP 277
G+F V+ P+ ++++ A A S F + L +++A E VT+ + ++
Sbjct: 229 PKRGEFPVVAGPI-IVGIIAHEALGHLAEADLTMNSPFKDLLGKQIAPEYVTMSE-RHVE 286
Query: 278 NGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAGLIS------PRA 331
G+G K+DDEGVP R+ +IE G LK + N A K+ E +A R
Sbjct: 287 GGFGNDKYDDEGVPVRDIHIIENGILKEIMLNREYATKFNMEPNGHARAQDYRYPPIIRM 346
Query: 332 WNIVLEPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGEL-KP 390
N V EPGD++ +E+ +++K G Y+ + + Q + F ++G ++I NGE+ +P
Sbjct: 347 RNTVFEPGDWSFEEMIEDIKFGYYLVD--FRGGQAQLNSAFQVGIQEG-YVIRNGEIAEP 403
Query: 391 IRNIRVSDNMLRILQNIVGLTKE 413
IR+ ++ + L+ I + K+
Sbjct: 404 IRDTSITGVAIEALKKITAVGKD 426
>pir||B71249 hypothetical protein PH0249 - Pyrococcus horikoshii
>gi|3256638|dbj|BAA29321.1| (AP000001) 426aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 426
Score = 83.9 bits (204), Expect = 3e-15
Identities = 88/323 (27%), Positives = 146/323 (44%), Gaps = 31/323 (9%)
Query: 103 PFKYEDIPETFDKAIVEL--DDPSEYVERAINAALEEGAKRVAGVLYTDHDKIYLTTSNG 160
P KY I +DK IV+L +D S Y +N + A + T + SNG
Sbjct: 102 PGKYPSIRGLYDKRIVDLSIEDLSYYGTELVNIEVFGEAS-----IGTSTGIRGIMNSNG 156
Query: 161 VEAFDEGTGIEISVRAFIGDLESGHGTNSVRVLKKFDPESAGRKAGEIA----KMARNPE 216
VE + + + + + A+ SG S RVL D E + E A K++R +
Sbjct: 157 VEGSENRSLLTLGLYAYEKGKGSGSYGKSFRVLP--DMEKVVEEIKETAMFEFKLSREAK 214
Query: 217 QGPEGKFDVIFDPLAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNL 276
+ + + ++I +P A + LS SA +V S F +L +V+SE +I D +
Sbjct: 215 KIEKYEGEIIIEPKALISFLSIFVPNVSAKSVYMKRSRF-ERLGVEVSSESFSIIDDPTI 273
Query: 277 PNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANA-------GLISP 329
G G+ FD EG P +I+ G L ++L + G +T NA +I
Sbjct: 274 DEGLGSYSFDGEGNPGMRKFIIKDGVLTSFLSDQKYGSLLGIGSTGNAIRSYSSQPIID- 332
Query: 330 RAWNIVLEPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGELK 389
+ N+++ G+ T DE GI+I +V+ N +TGDFS G +++ N +K
Sbjct: 333 -SSNLLIPSGNETLDE-------GIFIRSVYGEHTANPITGDFSLNIELG-YIVNNRGVK 383
Query: 390 PIRNIRVSDNMLRILQNIVGLTK 412
P + + N+ +L+N+ + K
Sbjct: 384 PFKGNMIVGNIFEMLKNVTSIDK 406
>pir||D72762 hypothetical protein APE0089 - Aeropyrum pernix (strain K1)
>gi|5103477|dbj|BAA78998.1| (AP000058) 489aa long
hypothetical protein [Aeropyrum pernix]
Length = 489
Score = 83.1 bits (202), Expect = 6e-15
Identities = 86/309 (27%), Positives = 143/309 (45%), Gaps = 39/309 (12%)
Query: 111 ETFDKAIVELDDPSEYVERAINAALEEGAKRVAGVLYTD--HDKIYLTTSNG-VEAFDEG 167
E DKA + L EY + + +++ AK + Y+D K+ +T+ G +E+
Sbjct: 140 ELEDKASIVL----EYSKSLESKSVDLKAKTFS---YSDVLEAKLIITSDGGNIESIIPR 192
Query: 168 TGIEISVRAFIGDLES---GH--GTNSVRVLKKFDPESAGRK-AGEIAKMARNPEQGPEG 221
I ++ A GD + GH G+ + ++ + ES + + E P+G
Sbjct: 193 VSIFYNIAAEHGDRRANKWGHLAGSGGLELVGELGLESMLKDDVNSLEVNLVKAEPSPKG 252
Query: 222 KFDVIFDP----LAFANLLSYMGWAFSAF---AVEAGFSYFANKLDQKVASEVVTIKDIG 274
DVI P LA + + A A +AG SY LD ++ S VT+ D
Sbjct: 253 VMDVIISPEIVGLALHESIGHPSEADRVMGREAAQAGLSY-RMWLDGRIGSSKVTVADDP 311
Query: 275 NLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAGLISPRAWNI 334
+P YG +DDE VP RE +LI +G L L + + A +G ++ A ++ R+ I
Sbjct: 312 TVPGSYGFYLYDDEAVPARERILINKGELAELLHSRTTAYSFGVQSNGAARAMNYRSEPI 371
Query: 335 V------LEPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRD---GIFLIEN 385
V L+PGD +EL ++VK GIY+ + + + +F + R +LI+N
Sbjct: 372 VRMSNTYLKPGDMRFEELLEDVKEGIYMKS-----YMEWNIDEFRLVARYVGLEAYLIKN 426
Query: 386 GEL-KPIRN 393
G + KP+R+
Sbjct: 427 GRIVKPVRD 435
>pir||F82718 TldD protein XF1127 [imported] - Xylella fastidiosa (strain 9a5c)
>gi|9106089|gb|AAF83937.1|AE003949_1 (AE003949) TldD
protein [Xylella fastidiosa]
Length = 485
Score = 83.1 bits (202), Expect = 6e-15
Identities = 82/300 (27%), Positives = 129/300 (42%), Gaps = 21/300 (7%)
Query: 127 VERAINAALEEGAKRVAGVLYT---DHDKIYLTTSNGVEAFDEGTGIEISVRAFI---GD 180
V R ++ L RV V+ D + + S+GV A D + ++V+ + G
Sbjct: 144 VMRRVDQLLRAADPRVTQVMVNLSGGVDVVLIARSDGVLAADVRPLVRLNVQVIVEGHGR 203
Query: 181 LESGHGTNSVR-----VLKKFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAFANL 235
ESG+ R + PE+ R+A A + P G V+ L
Sbjct: 204 RESGYAGGGGRYGYAELFADGRPEAFAREALRQALVNLEAIPAPAGVMPVVLGAGWPGVL 263
Query: 236 L-SYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRE 294
L +G G S +A ++ ++VAS VTI D G L G+ DDEG PT+
Sbjct: 264 LHEAVGHGLEGDFNRKGTSVYAGRIGERVASPGVTIVDDGTLDGRRGSLNIDDEGTPTQC 323
Query: 295 TVLIERGTLKTYLFNTSLAKKYGKETTAN------AGLISPRAWNIVLEPGDYTKDELFQ 348
T LIE G L Y+ +T A+ G +T N A L PR N + G ++++E+ +
Sbjct: 324 TTLIEDGVLVGYMQDTLNARLMGVASTGNGRRESFAHLTMPRMTNTYMRAGVHSREEMIR 383
Query: 349 EVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGEL-KPIRNIRVSDNMLRILQNI 407
VK+G+Y N + Q +T +LIE+G + PI+ + N +Q +
Sbjct: 384 SVKKGLYAVN--FGGGQVDITSGKYVFSATEAYLIEDGRVTAPIKGATLIGNGPETMQRV 441
>sp|P74002|YD22_SYNY3 HYPOTHETICAL 53.1 KD PROTEIN SLR1322 >gi|7429840|pir||S75512
hypothetical protein slr1322 - Synechocystis sp. (strain
PCC 6803) >gi|1653157|dbj|BAA18073.1| (D90911)
hypothetical protein [Synechocystis sp.]
Length = 489
Score = 83.1 bits (202), Expect = 6e-15
Identities = 69/277 (24%), Positives = 125/277 (44%), Gaps = 20/277 (7%)
Query: 147 YTDHDKIYLTTSNGVEAFDEGTGIEISVRAFIGDLES-------GHGTNSVRVLKKFDPE 199
+ D ++ + S+G A D + F D E T++ L+ +D E
Sbjct: 177 FRDWQEVLVAASDGTFARDIRLTQSVGFSLFCADGEHRTSIGKRSGDTSNPDYLRTWDAE 236
Query: 200 SAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAFANLLSY--MGWAFSAFAVEAGFSYFAN 257
++ ++ E A + G + +I F ++ + G +E + F +
Sbjct: 237 TSAQEVAESAGKMLYADYVESGNYPIIMAN-QFGGVIFHEACGHLLETTQIEHKTTPFLD 295
Query: 258 KLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYG 317
K +K+A E +T D G N +GT DDEG+PT+ T+LIE G LK ++ + + + + G
Sbjct: 296 KKGEKIAHENLTAWDEGLTDNAFGTIDMDDEGMPTQRTLLIENGILKNFIADRTGSIRTG 355
Query: 318 KETTAN------AGLISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTGD 371
T + A + R N + PG+Y+ D++F V++GIY + TG+
Sbjct: 356 HPRTGSGRRQSYAYAAASRMRNTYIAPGNYSVDDIFNSVEKGIYCKQMGGGSVG--ATGE 413
Query: 372 FSTIPRDGIFLIENGEL-KPIRNIRVSDNMLRILQNI 407
F+ + +L+ENG+L KP++ + I+ I
Sbjct: 414 FNFAVSEA-YLVENGKLTKPLKGATLIGTATEIMNKI 449
>pir||G82325 tldD protein VC0422 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9654844|gb|AAF93595.1| (AE004129) tldD
protein [Vibrio cholerae]
Length = 481
Score = 82.7 bits (201), Expect = 8e-15
Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 9/164 (5%)
Query: 251 GFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNT 310
G S FA K+ +KV S++ TI D G L + G+ DDEGV + VLIE+G LK Y+ +
Sbjct: 277 GSSVFAGKVGKKVTSDLCTIVDDGTLKDLRGSLNVDDEGVSGQYNVLIEKGILKGYIQDK 336
Query: 311 SLAKKYGKETTAN------AGLISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVWYTRF 364
A+ G T N A L PR N + PG++T +E+ VK+GIY N +
Sbjct: 337 LNARLMGVAPTGNGRRESYAHLPMPRMTNTYMLPGEHTPEEIIASVKKGIYAPN--FGGG 394
Query: 365 QNYMTGDFSTIPRDGIFLIENGEL-KPIRNIRVSDNMLRILQNI 407
Q +T +LIENG++ +PI+ + + + +Q +
Sbjct: 395 QVDITSGKFVFSASEAYLIENGKITRPIKGATLIGSGIEAMQQV 438
>sp|P57478|TLDD_BUCAI TLDD PROTEIN HOMOLOG >gi|10039067|dbj|BAB13101.1| (AP001119) tldD
protein [Buchnera sp. APS]
Length = 483
Score = 82.3 bits (200), Expect = 1e-14
Identities = 79/304 (25%), Positives = 132/304 (42%), Gaps = 24/304 (7%)
Query: 126 YVERAINAALEEGAKRVAGVLYTDHDKIYLTTSNGVEAFDEGTGIEISVRAFIGDL---- 181
Y I +L+ V L +++I + +++G D I+ S+ + D
Sbjct: 139 YRANYIARSLDHRVIEVNASLTGSYEQILVASTDGNLVSDIRPSIQFSISVLVEDHGKRE 198
Query: 182 --ESGHGT--------NSVRVLKKFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLA 231
SG G+ N K+ + ++A IA + + ++ G F V+
Sbjct: 199 RGRSGGGSRTDYNFFLNQDDSSKEIRIDHWSKEAVRIALLNLSSKEALSGTFPVVLGSGW 258
Query: 232 FANLL-SYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGV 290
LL +G G S F N + +KVASE+ TI D G + N G+ DDEG
Sbjct: 259 PGVLLHEAIGHGLEGDFNRKGTSIFTNMIGKKVASELCTIIDDGTIKNQRGSLSIDDEGT 318
Query: 291 PTRETVLIERGTLKTYLFNTSLAKKYGKETTAN------AGLISPRAWNIVLEPGDYTKD 344
P ++ +LIE G LK Y+ + A+ G ++T N + L PR N + G D
Sbjct: 319 PGQKNILIENGILKKYMQDKLNARLMGVKSTGNGRRESYSCLPMPRMTNTYMLSGKSKLD 378
Query: 345 ELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGEL-KPIRNIRVSDNMLRI 403
++ + V GIY N ++ Q +T +LI+NG++ PI+N + + L +
Sbjct: 379 DIIKSVDYGIYAVN--FSGGQVDITSGKFVFSTSEAYLIKNGKIVTPIKNTTLIGSGLEV 436
Query: 404 LQNI 407
+Q I
Sbjct: 437 MQKI 440
>pir||B75213 pmba protein (tlde protein) PAB0155 - Pyrococcus abyssi (strain
Orsay) >gi|5457662|emb|CAB49153.1| (AJ248283) PMBA
PROTEIN (TLDE PROTEIN) [Pyrococcus abyssi]
Length = 427
Score = 81.9 bits (199), Expect = 1e-14
Identities = 73/268 (27%), Positives = 124/268 (46%), Gaps = 20/268 (7%)
Query: 155 LTTSNGVEAFDEGTGIEISVRAFIGDLESGHGTNSVRVLKKFDPESAGRKAGEIAKMARN 214
+ SNG E +E T + + F +G + S R L K + E G + + + +
Sbjct: 152 IMNSNGTEGREERTLLAFGLYVFEKSKGTGSYSKSFRRLPKLESEIEGVREKALWEFEMS 211
Query: 215 PEQGPEGKF--DVIFDPLAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKD 272
+ K+ ++I +P A A++LS SA V S F +L +VAS +TI D
Sbjct: 212 SKARKLEKYNGEIILEPKAVASILSIFLPNVSARNVYLKRSRFT-ELGIEVASGGLTIID 270
Query: 273 IGNLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAG------- 325
+ G + FD EG P +I+ G L ++L + G +T NA
Sbjct: 271 DPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNASRGYSSQP 330
Query: 326 LISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIEN 385
ISP NI++ PG+ +DE GI+I ++ N ++GDFS + D +++
Sbjct: 331 SISPS--NIMISPGNDEQDE-------GIFIRGIYGEHTANSVSGDFS-LNVDLGYVVRG 380
Query: 386 GELKPIRNIRVSDNMLRILQNIVGLTKE 413
GE++P + + N+ +L+N+ + KE
Sbjct: 381 GEIRPFKGNMLVGNVFEMLKNVTNIGKE 408
>pir||C75180 tldd related protein PAB1955 - Pyrococcus abyssi (strain Orsay)
>gi|5458032|emb|CAB49522.1| (AJ248284) TLDD RELATED
PROTEIN [Pyrococcus abyssi]
Length = 458
Score = 80.0 bits (194), Expect = 5e-14
Identities = 57/200 (28%), Positives = 102/200 (50%), Gaps = 12/200 (6%)
Query: 221 GKFDVIFDPLAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGY 280
G+F V+ P+ L+++ A A S F + L +++A E VT+ + + G+
Sbjct: 232 GEFPVVAGPI-IVGLIAHEALGHLAEADLTMNSPFKDLLGKQIAPEYVTMSE-RYVEGGF 289
Query: 281 GTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAGLIS------PRAWNI 334
G K+DDEGVP ++ +IE G LK + N A K+ E +A R N
Sbjct: 290 GNDKYDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNT 349
Query: 335 VLEPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGEL-KPIRN 393
V EPGD++ +E+ +++K G Y+ + + Q + F ++G ++I NGE+ +PIR+
Sbjct: 350 VFEPGDWSFEEMIEDIKFGYYLVD--FRGGQAQLNSAFQVGIQEG-YVIRNGEIAEPIRD 406
Query: 394 IRVSDNMLRILQNIVGLTKE 413
++ + L+ I + K+
Sbjct: 407 TSITGVAIEALKKISAVGKD 426
>pir||F81010 tldD protein NMB2066 [imported] - Neisseria meningitidis (group B
strain MD58) >gi|7227328|gb|AAF42385.1| (AE002556) tldD
protein [Neisseria meningitidis MC58]
Length = 480
Score = 79.6 bits (193), Expect = 7e-14
Identities = 83/336 (24%), Positives = 133/336 (38%), Gaps = 28/336 (8%)
Query: 98 GIAEGPFKYEDIPETFDKAIVELDDPSEYVERAINAALEEGAKRVAGV-----------L 146
G A G + ET K + DP ++ A AL + +A L
Sbjct: 102 GAAGGKVSAKMPSETRGKPVCSASDPIAGLDSAAKVALLNKVEAIAKAADPRIVQVMAGL 161
Query: 147 YTDHDKIYLTTSNGVEAFDEGTGIEISVRAFIGD---LESGHGTNSVRV-LKKFDPESAG 202
++D +YL +G A D + ++V E G R L FD
Sbjct: 162 TCEYDMVYLARLDGKHAADIRPMVRLNVTVIAKQGERREQGSAGGGGRYDLAYFDENLVH 221
Query: 203 RKAGEIAKMARN---PEQGPEGKFDVIFDPLAFANLL-SYMGWAFSAFAVEAGFSYFANK 258
R K A P G+ V+ LL +G G S F+ +
Sbjct: 222 RFVDAAVKQALTNLESRPAPAGEMTVVLGNGWPGVLLHEAVGHGLEGDFNRKGTSVFSGR 281
Query: 259 LDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGK 318
+ ++VA++ VT+ D G++ G+ DDEG TR TVLIE G L Y+ + + A+ G
Sbjct: 282 IGERVAAKGVTVVDQGDIAGRRGSLNIDDEGNETRRTVLIEDGILVGYMQDETNARLTGT 341
Query: 319 ETTAN------AGLISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTGDF 372
++T N A PR N +E G Y +E+ + +GIY N + Q +T
Sbjct: 342 QSTGNGRRESYASAPMPRMTNTFMENGSYEPEEIIASIDKGIYAVN--FGGGQVDITSGK 399
Query: 373 STIPRDGIFLIENGELK-PIRNIRVSDNMLRILQNI 407
+ +E G L+ P++ + N +L+++
Sbjct: 400 FVFSASEAWWVEGGRLQYPVKGATIIGNGPEVLKHV 435
>pir||A82033 TLDD protein homolog NMA0367 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379119|emb|CAB83668.1|
(AL162752) TLDD protein homolog [Neisseria meningitidis
Z2491]
Length = 480
Score = 78.0 bits (189), Expect = 2e-13
Identities = 82/336 (24%), Positives = 133/336 (39%), Gaps = 28/336 (8%)
Query: 98 GIAEGPFKYEDIPETFDKAIVELDDPSEYVERAINAALEEGAKRVAGV-----------L 146
G A G + ET K + DP ++ A AL + +A L
Sbjct: 102 GAAGGKVSAKMPSETRGKPVCSASDPIAGLDSAAKVALLNKVEAIAKAADPRIVQVMAGL 161
Query: 147 YTDHDKIYLTTSNGVEAFDEGTGIEISVRAFIGD---LESGHGTNSVRV-LKKFDPESAG 202
++D +YL +G A D + ++V E G R L FD
Sbjct: 162 TCEYDMVYLARLDGKHAADIRPMVRLNVTVIAKQGERREQGSAGGGGRYDLAYFDENLVR 221
Query: 203 RKAGEIAKMARN---PEQGPEGKFDVIFDPLAFANLL-SYMGWAFSAFAVEAGFSYFANK 258
+ K A P G+ V+ LL +G G S F+ +
Sbjct: 222 QFVDAAVKQALTNLESRPAPAGEMTVVLGNGWPGVLLHEAVGHGLEGDFNRKGTSVFSGR 281
Query: 259 LDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGK 318
+ ++VA++ VT+ D G++ G+ DDEG TR TVLIE G L Y+ + + A+ G
Sbjct: 282 IGERVAAKGVTVVDQGDIAGRRGSLNIDDEGNETRRTVLIEDGILVGYMQDETNARLTGT 341
Query: 319 ETTAN------AGLISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTGDF 372
++T N A PR N +E G Y +E+ + +GIY N + Q +T
Sbjct: 342 QSTGNGRRESYASAPMPRMTNTFMENGSYEPEEIIASIDKGIYAVN--FGGGQVDITSGK 399
Query: 373 STIPRDGIFLIENGELK-PIRNIRVSDNMLRILQNI 407
+ +E G L+ P++ + N +L+++
Sbjct: 400 FVFSASEAWWVEGGRLQYPVKGATIIGNGPEVLKHV 435
>sp|P24231|PMBA_ECOLI PMBA PROTEIN (TLDE PROTEIN) >gi|96308|pir||S13730 pmbA protein -
Escherichia coli >gi|42440|emb|CAA38091.1| (X54152) pmbA
is involved in the production of antibiotic MccB17
[Escherichia coli] >gi|537077|gb|AAA97132.1| (U14003)
pmbA gene product [Escherichia coli]
>gi|1732440|dbj|BAA07915.1| (D44452) TldE protein
[Escherichia coli] >gi|1790682|gb|AAC77192.1| (AE000494)
maturation of antibiotic MccB17, see tld genes
[Escherichia coli K12]
Length = 450
Score = 77.6 bits (188), Expect = 3e-13
Identities = 88/365 (24%), Positives = 159/365 (43%), Gaps = 30/365 (8%)
Query: 60 EKRIAGTSITDLTEENIERTLKTLKANLEKMKPREDYYGIAEGPFKYEDIPET--FDKAI 117
+ R S TDL+ + I RT++ ++ + + G+A+ D P+ F A
Sbjct: 73 QNRKGSASSTDLSPQAIARTVQAA-LDIARYTSPDPCAGVADKELLAFDAPDLDLFHPAE 131
Query: 118 VELDDPSEYVERAINAALEEGAKRVAGVLYTDHDKIYLTTSNGVEAFDEGTGI---EISV 174
V D+ E RA AAL+ KR+ + Y GV+ F G+ S
Sbjct: 132 VSPDEAIELAARAEQAALQAD-KRITNTEGGSFNSHY-----GVKVFGNSHGMLQGYCST 185
Query: 175 RAFI---------GDLESGHGTNSVRVLKKFD-PESAGRKAGEIAKMARNPEQGPEGKFD 224
R + GD+E + R + PE G +P + K
Sbjct: 186 RHSLSSCVIAEENGDMERDYAYTIGRAMSDLQTPEWVGADCARRTLSRLSPRKLSTMKAP 245
Query: 225 VIFDPLAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRK 284
VIF L ++ A + +V ++ + L +++ + +TI++ +L G +
Sbjct: 246 VIFANEVATGLFGHLVGAIAGGSVYRKSTFLLDSLGKQILPDWLTIEEHPHLLKGLASTP 305
Query: 285 FDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAGLISPRAWNIVLEPGDYTKD 344
FD EGV T +I+ G L +L + A+K G ++T +AG I W I + + +
Sbjct: 306 FDSEGVRTERRDIIKDGILTQWLLTSYSARKLGLKSTGHAGGI--HNWRIAGQGLSF--E 361
Query: 345 ELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGELK-PIRNIRVSDNMLRI 403
++ +E+ G+ +T + + + +TGD+S F +ENGE++ P+ I ++ N+ +
Sbjct: 362 QMLKEMGTGLVVTEL-MGQGVSAITGDYSRGAAG--FWVENGEIQYPVSEITIAGNLKDM 418
Query: 404 LQNIV 408
+NIV
Sbjct: 419 WRNIV 423
>emb|CAB59433.1| (AL132644) hypothetical protein SCI8.02 [Streptomyces coelicolor
A3(2)]
Length = 464
Score = 76.9 bits (186), Expect = 4e-13
Identities = 100/469 (21%), Positives = 193/469 (40%), Gaps = 53/469 (11%)
Query: 11 ILKKAKELGFGD-VVVLSYETNRRQIRFANNEVTVAKHWNERKVELFVEWEKRIAGT--- 66
++++A EL D VV++ E + +R+A N +T R + + + R GT
Sbjct: 11 VVERALELSRADGCVVIADEESTANLRWAGNTLTTNGVTRGRTLTVVATVDGR-EGTASG 69
Query: 67 --SITDLTEENIERTLKTLKANLEKMKPREDYYGIAEGPFK---YEDIPETFDKAIVELD 121
S + +T + +E ++ +A P ED + G + D P A+
Sbjct: 70 VVSRSAVTLDELEPLVRAAEAAARNAGPAEDAQPLVTGGAAAPDFTDAPAETSSAVFADF 129
Query: 122 DPS--EYVERAINAALEEGAKRVAGVLYTDHDKIYLTTSNGVEAFDEGTGIEISVRAFIG 179
P+ E RA G + + G + Y+ TS G+ + + + A
Sbjct: 130 APALGEAFARA-----RAGDRELYGFANHEMTSTYVGTSTGLRLRHDQPNGTLELNAKSP 184
Query: 180 D-LESGHGTNSVRVLKKFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAFANLLSY 238
D S + R K DP + + A + P G+++ + P A A+LL Y
Sbjct: 185 DRTRSAWAGRATRDFKDVDPAALDAELAVRLGWAERRVELPAGRYETLLPPTAVADLLIY 244
Query: 239 MGWAFSAFAVEAGFSYFAN----KLDQKVASEVVTIKDIGNLP-----------NGYGTR 283
W+ S G + F+ ++ +++ + +T++ + P + G +
Sbjct: 245 QYWSASGRDAVEGRTVFSKPGGTRVGERLGTLPLTLRSDPHEPGLESAPFVVAHSSGGDQ 304
Query: 284 KFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAGL----ISPRAWNIVLEPG 339
D G+P T I G L T +AGL ++P N+VL+ G
Sbjct: 305 SVFDNGLPVAATDWIRDGELHRLT-----------TTRHSAGLTGLPVAPAIGNLVLDGG 353
Query: 340 DYTK--DELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGE-LKPIRNIRV 396
D + DE+ +RG+ +T +WY R + T + + RDG++L+E+GE + + N R
Sbjct: 354 DPDRSLDEMVAGTERGLLLTCLWYIREVDPATLLLTGLTRDGVYLVEHGEVVGEVNNFRF 413
Query: 397 SDNMLRIL--QNIVGLTKESHHVHWWEVSRPVTTPYVLVKEVGITRATK 443
+++ + +L + G T+++ W + P + V + ++ ++
Sbjct: 414 NESPVGLLGRASEAGRTEKTLPREWGDWFTRTAMPALRVPDFNMSSVSQ 462
>gb|AAK41402.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 458
Score = 76.1 bits (184), Expect = 7e-13
Identities = 72/310 (23%), Positives = 132/310 (42%), Gaps = 35/310 (11%)
Query: 70 DLTEENIERTLKTLKANLEKMKPREDYYGIAEGPFKYEDIPETFDKAIVELDDPSEYVER 129
DL N E ++ ++ L+ +P+E Y + EG + FD ++ +D+ + +
Sbjct: 66 DLLSSNKEYKIEGWESGLDNTEPKEGSYEVKEG--------KPFD--LMSVDEKISFFKN 115
Query: 130 AINAALEEGAKRVAGVLYTDHDKIYLTTSNGVEAFDEGTGIEISVRAFIGD--------L 181
A + + + Y + + NG + + + + +
Sbjct: 116 LYEAVKDFRSVKSVSFFYDESIEEKEIIVNGSRIVGRVPRLYVGMNLVLNENNRTATAFY 175
Query: 182 ESGHGTNSVRVLKKFD-PESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAFANLLSY-- 238
E G G+ + VL++ + E K + ++ + E DV+ + ++++
Sbjct: 176 ELG-GSGGLEVLERMNLNEVVVDKVRSVTEVLAKGKSFGERTTDVVLSNM-LTGIMAHES 233
Query: 239 MGWAFSAFAV------EAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPT 292
+G F A V +AG SY A D ++ S+VVT+ D +PN G DDEGV
Sbjct: 234 VGHPFEADRVLGREFAQAGLSYLAELKDNRIGSDVVTVIDDPTIPNSGGYYTTDDEGVEA 293
Query: 293 RETVLIERGTLKTYLFNTSLAKKYGKETTANAGLIS------PRAWNIVLEPGDYTKDEL 346
R LI+ G + YL N + K+ ++ +A + R N +PG+ T DEL
Sbjct: 294 RPKYLIKDGKVNEYLQNRFSSSKFNVKSNGSARAANFDREPLIRMSNTFFKPGNMTFDEL 353
Query: 347 FQEVKRGIYI 356
++VK G+YI
Sbjct: 354 LEDVKEGVYI 363
>sp|P46473|TLDD_ECOLI TLDD PROTEIN >gi|7429829|pir||F65116 tldD protein - Escherichia
coli (strain K-12) >gi|606183|gb|AAA58046.1| (U18997)
ORF_f481 [Escherichia coli] >gi|1732437|dbj|BAA07913.1|
(D44451) TldD protein [Escherichia coli]
>gi|1789640|gb|AAC76276.1| (AE000403) suppresses
inhibitory activity of CsrA [Escherichia coli K12]
Length = 481
Score = 75.7 bits (183), Expect = 1e-12
Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 9/164 (5%)
Query: 251 GFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNT 310
G S F+ ++ + VASE+ T+ D G + + G+ DDEG P + VLIE G LK Y+ +
Sbjct: 277 GTSVFSGQVGELVASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQDK 336
Query: 311 SLAKKYGKETTAN------AGLISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVWYTRF 364
A+ G T N A L PR N + PG T E+ + V+ GIY N +
Sbjct: 337 LNARLMGMTPTGNGRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPN--FGGG 394
Query: 365 QNYMTGDFSTIPRDGIFLIENGEL-KPIRNIRVSDNMLRILQNI 407
Q +T +LIENG++ KP++ + + + +Q I
Sbjct: 395 QVDITSGKFVFSTSEAYLIENGKVTKPVKGATLIGSGIETMQQI 438
>gi|11498264 antibiotic maturation protein (pmbA) [Archaeoglobus fulgidus]
>gi|7429843|pir||H69331 hypothetical protein AF0656 -
Archaeoglobus fulgidus >gi|2649962|gb|AAB90584.1|
(AE001059) antibiotic maturation protein (pmbA)
[Archaeoglobus fulgidus]
Length = 391
Score = 74.5 bits (180), Expect = 2e-12
Identities = 83/308 (26%), Positives = 139/308 (44%), Gaps = 35/308 (11%)
Query: 113 FDKAIVELDDP--SEYVERAINAALEEGAKRVAGVLYTDHDKIYLTTSNGVEAFDEGTGI 170
+DK + E D E ER +A E A + + +++ +T S G+++ ++ T
Sbjct: 84 YDKRVEEADSELIMEEFERLRSAV--EKANIASATIEHAVEEVRITNSFGLDSREKSTSS 141
Query: 171 EISVRAFI--GDLESGHGTNSVRVLKKFDPESAGRKAGEIAKMARNPEQGPEGKFDVIFD 228
+ V A G G+ S+ + D E A +KA E+A + + G +DVI
Sbjct: 142 SMIVEAVFEGGSAYEVCGSRSIEL----DIEGAAKKAEELAVDSAKAIKIEGGTYDVILQ 197
Query: 229 PLAFANLLSYMGW-AFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDD 287
P+A LLS + + SA VE G S +L + +T+ D + G + FDD
Sbjct: 198 PIAVHQLLSNTLYPSLSAENVEKGRSVI--RLGDEFGR--ITVIDDPTVEGGLMSCGFDD 253
Query: 288 EGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTAN------AGLISPRAWNIVLEPGDY 341
EGV R+T LI+ G +++Y + +KKYG T N + +P N+VLE D
Sbjct: 254 EGVSARKTFLIDNGVVRSYYTDWKHSKKYG--VTGNGFRLEESSFPAPMVSNVVLEVDDA 311
Query: 342 TKDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGELKPIRNIRVSDNML 401
D + I ++ + N ++GDFS + F GE K ++ + N+
Sbjct: 312 DDDNC-------LTIHSLIGSHTANPVSGDFSLECNNAYF----GE-KAVKGAMIYGNVF 359
Query: 402 RILQNIVG 409
+L+ + G
Sbjct: 360 ELLKKVEG 367
>gb|AAK40965.1| Zn-dependent protease, tldD protein homolog, putative (tldD)
[Sulfolobus solfataricus]
Length = 443
Score = 73.4 bits (177), Expect = 5e-12
Identities = 99/428 (23%), Positives = 179/428 (41%), Gaps = 50/428 (11%)
Query: 12 LKKAKELG--FGDVVVLSYETNRRQIRFANNEVTVAK------HWNERKVELFVEWEKRI 63
+KKA+ELG F D+ R R NEVT+ + H + + V + +
Sbjct: 5 IKKAEELGASFADI---------RYERVIANEVTITEDRKYVSHGVDEGYSIRVIYNRNW 55
Query: 64 AGTSITDLTEENIERTLKTL----KANLEKMKPREDYYGIAEGPFKYEDIPETFDKAIVE 119
+ +TE IE T+ + + N+ + + D I + DI + ++ I +
Sbjct: 56 GFKATDKITENEIEDTINHIYGDERVNIVYLPSKHDTIKIGK------DINKNEEEKIND 109
Query: 120 LDDPSEYVERAINAALEEGAKRVAGVLYTD--HDKIYLTTSNGVEAFDEGTGIEISVRAF 177
L + V L K + Y + H + Y + + A + + I V A
Sbjct: 110 LHKVASQVN-----TLHPSIKSYSIKYYDEIFHKEYYSSEDREIIADGSSSSLSILVVAR 164
Query: 178 IGDLE-SGHGTNSVRVLKKFDPESAGRKAGEIAKMARNPEQGPE---GKFDVIFDPLAFA 233
GD+ S ++ FD + + K N +G G++ VI P
Sbjct: 165 EGDVTVEVSEILSTQMGYIFDVFDINQVLANLQKRIINQLKGSTPKAGEYPVILAPEVVG 224
Query: 234 NLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKF-DDEGVPT 292
S V S + + ++++ E + I D+ + + + + DDEGV
Sbjct: 225 IFTHEAIGHLSEADVTLNGSLYKLR-NKRIGDEFLNISDLPAMDHPQSSLVYYDDEGVEG 283
Query: 293 RETVLIERGTLKTYLFNTSLAKKYGKETTANAGLISPRAWNIV------LEPGDYTKDEL 346
RE +IE G LK ++ + + G+ T NA S R ++++ ++PGD + +EL
Sbjct: 284 REVKIIENGILKEFMTDRYYSAYLGQPPTGNARAQSYRNFSLIRMRNTYMKPGDASLNEL 343
Query: 347 FQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGELK-PIRNIRVSDNMLRILQ 405
F+ +K G Y+ + + G F ++G + +EN E+K P+RNI +S N + L
Sbjct: 344 FEGIKEGYYLVSP--IGGETSSNGTFQFAIQEG-YRVENSEIKEPLRNIGISGNTISTLN 400
Query: 406 NIVGLTKE 413
I ++K+
Sbjct: 401 AIEMISKD 408
>emb|CAB57642.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 443
Score = 73.4 bits (177), Expect = 5e-12
Identities = 99/428 (23%), Positives = 179/428 (41%), Gaps = 50/428 (11%)
Query: 12 LKKAKELG--FGDVVVLSYETNRRQIRFANNEVTVAK------HWNERKVELFVEWEKRI 63
+KKA+ELG F D+ R R NEVT+ + H + + V + +
Sbjct: 5 IKKAEELGASFADI---------RYERVIANEVTITEDRKYVSHGVDEGYSIRVIYNRNW 55
Query: 64 AGTSITDLTEENIERTLKTL----KANLEKMKPREDYYGIAEGPFKYEDIPETFDKAIVE 119
+ +TE IE T+ + + N+ + + D I + DI + ++ I +
Sbjct: 56 GFKATDKITENEIEDTINHIYGDERVNIVYLPSKHDTIKIGK------DINKNEEEKIND 109
Query: 120 LDDPSEYVERAINAALEEGAKRVAGVLYTD--HDKIYLTTSNGVEAFDEGTGIEISVRAF 177
L + V L K + Y + H + Y + + A + + I V A
Sbjct: 110 LHKVASQVN-----TLHPSIKSYSIKYYDEIFHKEYYSSEDREIIADGSSSSLSILVVAR 164
Query: 178 IGDLE-SGHGTNSVRVLKKFDPESAGRKAGEIAKMARNPEQGPE---GKFDVIFDPLAFA 233
GD+ S ++ FD + + K N +G G++ VI P
Sbjct: 165 EGDVTVEVSEILSTQMGYIFDVFDINQVLANLQKRIINQLKGSTPKAGEYPVILAPEVVG 224
Query: 234 NLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKF-DDEGVPT 292
S V S + + ++++ E + I D+ + + + + DDEGV
Sbjct: 225 IFTHEAIGHLSEADVTLNGSLYKLR-NKRIGDEFLNISDLPAMDHPQSSLVYYDDEGVEG 283
Query: 293 RETVLIERGTLKTYLFNTSLAKKYGKETTANAGLISPRAWNIV------LEPGDYTKDEL 346
RE +IE G LK ++ + + G+ T NA S R ++++ ++PGD + +EL
Sbjct: 284 REVKIIENGILKEFMTDRYYSAYLGQPPTGNARAQSYRNFSLIRMRNTYMKPGDASLNEL 343
Query: 347 FQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGELK-PIRNIRVSDNMLRILQ 405
F+ +K G Y+ + + G F ++G + +EN E+K P+RNI +S N + L
Sbjct: 344 FEGIKEGYYLVSP--IGGETSSNGTFQFAIQEG-YRVENSEIKEPLRNIGISGNTISTLN 400
Query: 406 NIVGLTKE 413
I ++K+
Sbjct: 401 AIEMISKD 408
>sp|P45297|TLDD_HAEIN TLDD PROTEIN HOMOLOG
Length = 482
Score = 72.2 bits (174), Expect = 1e-11
Identities = 51/162 (31%), Positives = 80/162 (48%), Gaps = 9/162 (5%)
Query: 253 SYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSL 312
S F K+ ++V S + TI D G + N G+ DDEGVP++ VLI+ G L+ Y+ +
Sbjct: 280 SLFTGKIGEQVTSPLCTIVDDGTIENRRGSLTIDDEGVPSQCNVLIKDGILQGYMQDKMN 339
Query: 313 AKKYGKETTAN------AGLISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVWYTRFQN 366
A+ G TT N A L PR N + G D+L VK+GIY + + Q
Sbjct: 340 ARLMGVSTTGNGRRESYAHLPMPRMTNTYMLAGQSQFDDLIASVKQGIYAPH--FGGGQV 397
Query: 367 YMTGDFSTIPRDGIFLIENGEL-KPIRNIRVSDNMLRILQNI 407
+T +LIE G++ KP++ + + + ++Q I
Sbjct: 398 DITSGKFVFSTSEAYLIEKGKITKPVKGATLIGSGIEVMQKI 439
>sp|P57191|PMBA_BUCAI PMBA PROTEIN HOMOLOG >gi|10038774|dbj|BAB12809.1| (AP001118) pmbA
protein [Buchnera sp. APS]
Length = 446
Score = 72.2 bits (174), Expect = 1e-11
Identities = 53/199 (26%), Positives = 104/199 (51%), Gaps = 15/199 (7%)
Query: 222 KFDVIFDPLAFANLLSYMGWAFSAFAVEAGFSY-----FANKLDQKVASEVVTIKDIGNL 276
K + P+ F++ +S+M ++ A A+ Y N L K+ + + I++ +L
Sbjct: 234 KIQTMRSPIIFSSEISHMFFSHLASAISGDNVYQKSTFLINDLKMKIFPDWLDIEENPHL 293
Query: 277 PNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAGLISPRAWNIVL 336
G G++ FD+EGV T +I+ G L+T+L N A+K ++T N G I N ++
Sbjct: 294 KRGLGSKPFDNEGVATEIKYIIKAGILQTWLLNCYNARKLKLDSTGNCGGIH----NWLV 349
Query: 337 EPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGI-FLIENGELK-PIRNI 394
+ + +EL +++ +GI +T + + + + G++S R + F +E G++ PI I
Sbjct: 350 SNQNISFEELLKKMDQGILVTEL-MGQGVDIINGNYS---RGAVGFWVEKGKISYPINEI 405
Query: 395 RVSDNMLRILQNIVGLTKE 413
+S N+ + NIV ++ +
Sbjct: 406 TISGNLRNMWNNIVSISSD 424
>pir||D83086 conserved hypothetical protein PA4474 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950711|gb|AAG07862.1|AE004861_3 (AE004861)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 480
Score = 70.6 bits (170), Expect = 3e-11
Identities = 79/298 (26%), Positives = 122/298 (40%), Gaps = 22/298 (7%)
Query: 118 VELDDPSEYVERAINAALEEGAKRVAGVLYTDHDKIYLTTSNGVEAFDEGTGIEISVRAF 177
VEL + RA++ +++ +AGV ++I + S+G A D + +V
Sbjct: 137 VELLKQIDAATRALDPRIQQVTVSMAGVW----EQILVAASDGSLAADIRPLVRFNVSVI 192
Query: 178 I---GDLE-SGHGTNSVRVLKKFDPESAG----RKAGEIAKMARNPEQGPEGKFDVIFDP 229
+ G E GHG + F E R+A A + P G V+
Sbjct: 193 VEQNGRRERGGHGGGGRTDYRYFLQEDRAMGYAREALRQALVNLEAIPAPAGTLPVVMGA 252
Query: 230 LAFANLL-SYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDE 288
LL +G G S ++ ++ +KVAS + TI D G L G+ DDE
Sbjct: 253 GWSGVLLHEAVGHGLEGDFNRKGSSAYSGRVGEKVASSLCTIVDDGTLAGRRGSLSVDDE 312
Query: 289 GVPTRETVLIERGTLKTYLFNTSLAKKYGKETTAN------AGLISPRAWNIVLEPGDYT 342
G P+ VLIE G LK Y+ + A+ G T N A L PR N + G+
Sbjct: 313 GTPSNCNVLIENGVLKGYMQDKLNARLMGVARTGNGRRESYAHLPMPRMTNTYMLAGESD 372
Query: 343 KDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGEL-KPIRNIRVSDN 399
E+ V++GIY N+ + +T +LIENG + P++ + N
Sbjct: 373 PQEIIASVEKGIYCANLGGGQVD--ITSGKFVFSTSEAYLIENGRITTPVKGATLIGN 428
>pir||S75708 hypothetical protein sll0887 - Synechocystis sp. (strain PCC 6803)
>gi|1001203|dbj|BAA10443.1| (D64003) hypothetical
protein [Synechocystis sp.]
Length = 446
Score = 69.5 bits (167), Expect = 7e-11
Identities = 61/228 (26%), Positives = 103/228 (44%), Gaps = 16/228 (7%)
Query: 219 PEGKFDVIFDPLAFANLLSYMGWAFSAFAVEAGFSYFANK-LDQKVASEVVTIKDIGNLP 277
P GK+ V+F AF +LL ++A ++ S + L +ASE++ + D P
Sbjct: 226 PTGKYTVVFSARAFLSLLGAFSNLYNAQSILDKQSLATKETLGTAIASELLCVSDDALHP 285
Query: 278 NGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAGL-----ISPRAW 332
+FD EG PTR +I+ G L L + AK++ + T +A + + +
Sbjct: 286 GNISAERFDGEGTPTRRVDIIKNGVLTGLLHSAGTAKRFDTQPTGHANIGSKITVGAHFY 345
Query: 333 NIVLEPGDYTKDELFQEVKRGIYITNVWYTRF-QNYMTGDFSTIPRDGIFLIENGELKPI 391
++ E K + + +YI + N + G FS +P DG +L+ GE + I
Sbjct: 346 HVYSEK-TAEKSYSLDQAENVVYIDKLQALHAGVNSLQGSFS-LPFDG-WLVNKGEKQSI 402
Query: 392 RNIRVSDNMLRILQNIVGLTKESHHVHWWEVSRPVTTPYVLVKEVGIT 439
V+ + L +L+ IV L E+ EV+ P V V+ + IT
Sbjct: 403 DAATVAGDFLEVLKTIVYLEPEA------EVTPGGVCPLVWVEGLAIT 444
>pir||B82719 PmbA protein XF1131 [imported] - Xylella fastidiosa (strain 9a5c)
>gi|9106093|gb|AAF83941.1|AE003949_5 (AE003949) PmbA
protein [Xylella fastidiosa]
Length = 428
Score = 69.1 bits (166), Expect = 1e-10
Identities = 73/293 (24%), Positives = 127/293 (42%), Gaps = 22/293 (7%)
Query: 130 AINAALE-EGAKRVAGVLYTDHDKIYLTTSNGVEAFDEGTGI----EISVRAFIGDLESG 184
A++ AL E A R A + D ++T + + G ++ + L +G
Sbjct: 114 AVDLALACEAAGRAADARIVNSDGASVSTRFALSVYANSHGFVGRERMTQHSMSCALIAG 173
Query: 185 HGTNSVR------VLKKFD---PESAGRKAGEIAKMARNPEQGPEGKFDVIFDPLAFANL 235
HG R L + D P + GRKA E P + V+F P +L
Sbjct: 174 HGDGMQRDGWYTNALAREDLELPVAVGRKAAERTVARLQPRSLATTQLPVLFVPEVARSL 233
Query: 236 LSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGYGTRKFDDEGVPTRET 295
+ ++ A S A+ S+ + + ++ E I + +L G + FD EGV T +
Sbjct: 234 IGHLLNAVSGGALYRRASFLLDSVGTRLFPEWFAINERPHLRRGLRSATFDAEGVVTCDA 293
Query: 296 VLIERGTLKTYLFNTSLAKKYGKETTANAGLISPRAWNIVLEPGDYTKDELFQEVKRGIY 355
L+ G L+ Y+ ++ A+K G ++TANAG + N+ + D L + RG+
Sbjct: 294 PLVAGGVLQRYVLSSYSARKLGLQSTANAGGVH----NLEVIANAAGLDALVAGLPRGLL 349
Query: 356 ITNVWYTRFQNYMTGDFSTIPRDGIFLIENGELK-PIRNIRVSDNMLRILQNI 407
+T + + N +TGD+S F IENG + P+ + ++ N+ + I
Sbjct: 350 VTELMGSGV-NPVTGDYSRGAAG--FWIENGAIAYPVDGLTIAGNLREMFSAI 399
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.136 0.394
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165465855
Number of Sequences: 2977
Number of extensions: 7203069
Number of successful extensions: 17669
Number of sequences better than 1.0e-10: 50
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 17590
Number of HSP's gapped (non-prelim): 54
length of query: 443
length of database: 189,106,746
effective HSP length: 57
effective length of query: 386
effective length of database: 154,992,987
effective search space: 59827292982
effective search space used: 59827292982
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 166 (69.1 bits)