BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1554 (cstA) DE:CARBON STARVATION PROTEIN A.
(592 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75032 carbon starvation protein A homolog PAB1554 [similar... 1202 0.0
pir||E72523 carbon starvation protein A homolog APE2162 [similar... 482 e-135
sp|O67304|CSTA_AQUAE CARBON STARVATION PROTEIN A HOMOLOG >gi|744... 330 3e-89
dbj|BAB05512.1| (AP001513) carbon starvation-induced protein [Ba... 284 2e-75
pir||E81865 carbon starvation protein A homolog NMA1698 [similar... 271 1e-71
pir||C81078 carbon starvation protein A homolog NMB1493 [similar... 267 2e-70
sp|P94532|CSTA_BACSU CARBON STARVATION PROTEIN A HOMOLOG >gi|744... 263 6e-69
sp|P15078|CSTA_ECOLI CARBON STARVATION PROTEIN A >gi|7429186|pir... 259 6e-68
pir||D81365 carbon starvation protein A homolog Cj0917c [similar... 255 1e-66
pir||H83070 conserved hypothetical protein PA4606 [imported] - P... 252 6e-66
gb|AAF69024.1| (AF182514) unknown [Pseudomonas putida] 245 1e-63
pir||S14411 carbon starvation protein - Escherichia coli >gi|410... 235 1e-60
sp|P39396|YJIY_ECOLI HYPOTHETICAL 77.9 KD PROTEIN IN MRR-TSR INT... 234 3e-60
sp|P95095|CSTA_MYCTU CARBON STARVATION PROTEIN A HOMOLOG >gi|744... 233 3e-60
sp|P56190|CSTA_HELPY CARBON STARVATION PROTEIN A HOMOLOG >gi|744... 232 8e-60
sp|Q9ZK47|CSTA_HELPJ CARBON STARVATION PROTEIN A HOMOLOG >gi|744... 232 1e-59
emb|CAA86050.1| (Z37980) ORF12 [Escherichia coli] 207 2e-52
gb|AAD00522.1| (U81796) carbon starvation protein [Helicobacter ... 205 2e-51
dbj|BAA35227.1| (D90701) Hypothetical protein 200 (entA 3' regio... 175 1e-42
pir||A82294 probable carbon starvation protein A VC0687 [importe... 138 2e-31
sp|O86233|YB2X_HAEIN HYPOTHETICAL PROTEIN HI1126.1 >gi|3212213|g... 125 1e-27
>pir||E75032 carbon starvation protein A homolog PAB1554 [similarity] -
Pyrococcus abyssi (strain Orsay)
>gi|5458667|emb|CAB50154.1| (AJ248287) CARBON STARVATION
PROTEIN A. [Pyrococcus abyssi]
Length = 592
Score = 1202 bits (3077), Expect = 0.0
Identities = 592/592 (100%), Positives = 592/592 (100%)
Query: 1 MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH
Sbjct: 1 MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
Query: 61 HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA
Sbjct: 61 HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLY 180
GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLY
Sbjct: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLY 180
Query: 181 KVQINFKVGTIIGIILLIIAIYIGFKFPLVASAKAWYIFLGAYVIVASSLPVWVLLQPRD 240
KVQINFKVGTIIGIILLIIAIYIGFKFPLVASAKAWYIFLGAYVIVASSLPVWVLLQPRD
Sbjct: 181 KVQINFKVGTIIGIILLIIAIYIGFKFPLVASAKAWYIFLGAYVIVASSLPVWVLLQPRD 240
Query: 241 YLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPSPFWPTIPLVIACG 300
YLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPSPFWPTIPLVIACG
Sbjct: 241 YLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPSPFWPTIPLVIACG 300
Query: 301 ALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIAVYGLQIFHNAGIG 360
ALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIAVYGLQIFHNAGIG
Sbjct: 301 ALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIAVYGLQIFHNAGIG 360
Query: 361 ITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGTVIGKVGIFASSYAHGLHDAFG 420
ITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGTVIGKVGIFASSYAHGLHDAFG
Sbjct: 361 ITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGTVIGKVGIFASSYAHGLHDAFG 420
Query: 421 IDIHLGTLFASLWVSAFALTTLDTATRLGRFAWQEIIEMVKGPEILKNKWVASFILVFFG 480
IDIHLGTLFASLWVSAFALTTLDTATRLGRFAWQEIIEMVKGPEILKNKWVASFILVFFG
Sbjct: 421 IDIHLGTLFASLWVSAFALTTLDTATRLGRFAWQEIIEMVKGPEILKNKWVASFILVFFG 480
Query: 481 IALAWKGKWLVIWPAFSGMNQMLASIAMMTASLWVAKIQRPSGFWKWAVLIPALFLWVTV 540
IALAWKGKWLVIWPAFSGMNQMLASIAMMTASLWVAKIQRPSGFWKWAVLIPALFLWVTV
Sbjct: 481 IALAWKGKWLVIWPAFSGMNQMLASIAMMTASLWVAKIQRPSGFWKWAVLIPALFLWVTV 540
Query: 541 TSALIWFLIYVGKSSIWVSLITIVGLVLNFLLVIDWYNAWKKPAEEYQAAAA 592
TSALIWFLIYVGKSSIWVSLITIVGLVLNFLLVIDWYNAWKKPAEEYQAAAA
Sbjct: 541 TSALIWFLIYVGKSSIWVSLITIVGLVLNFLLVIDWYNAWKKPAEEYQAAAA 592
>pir||E72523 carbon starvation protein A homolog APE2162 [similarity] -
Aeropyrum pernix (strain K1) >gi|5105861|dbj|BAA81173.1|
(AP000063) 604aa long hypothetical carbon starvation
protein A [Aeropyrum pernix]
Length = 604
Score = 482 bits (1228), Expect = e-135
Identities = 282/641 (43%), Positives = 378/641 (57%), Gaps = 86/641 (13%)
Query: 1 MNSTVVILAAAI--IYVGLYFTYGKG-LQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVL 57
M+ +++L A I IY Y YG+ LQ KVVRA P R TPA +DGVDYVPAH VL
Sbjct: 1 MSMPILLLVAVILAIYAVAYLFYGRNILQEKVVRASPERETPAIAKFDGVDYVPAHRFVL 60
Query: 58 YGHHFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQ 117
+GHHFASIAGAGPIVGPA+AMA+GWL L+WV FGNVF+GAVHDYL+LM+SVRY G SI
Sbjct: 61 FGHHFASIAGAGPIVGPAIAMAYGWLLPLVWVLFGNVFMGAVHDYLSLMASVRYGGISIV 120
Query: 118 WIAGKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGW 177
+ LM ++ F +YV F LILV AAFA++ A +F + P AT SILF+ +A+LLG
Sbjct: 121 SVGENLMGRKARYLFLIYVLFTLILVYAAFASIAASLFARDPRVATLSILFMPLALLLGI 180
Query: 178 LLYKVQINFKVGTIIGIILLIIAIYIGFKFPLV---------------ASAKAWYIFLGA 222
++Y++ + T+I ++L+I A + +V + W I LG
Sbjct: 181 MMYRMGLGMGPSTVITVVLVIAAFVYSYNHGIVIGTFDPSLPPGEGGWVAYHRWVIILGL 240
Query: 223 YVIVASSLPVWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVV 282
Y ++A+SLPVW LLQPRDYLNAYILW GL L +A ++G + + PAYT+F +++
Sbjct: 241 YALLAASLPVWYLLQPRDYLNAYILWTGLGLAAIAAILLGTQ---SLKGPAYTSFQPNII 297
Query: 283 GGKPSPFWPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIV 342
G+P+PFWP IPL+IACG+LSGFHSLV SGT+SKQL +EL L VGYG M EG LS +
Sbjct: 298 AGQPTPFWPAIPLIIACGSLSGFHSLVASGTTSKQLASELDALFVGYGAMLLEGALSGLA 357
Query: 343 ISSIAVYGLQIFHNAGIGITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGTVIG 402
+ + + NA E +QK +EN N +
Sbjct: 358 V----IIPISFAWNA-----------------------PELIQK---GVIEN--NMLDLA 385
Query: 403 KVGIFASSYAHGL---HDAFGIDIHLG----TLFASLWVSAFALTTLDTATRLGRFAWQE 455
V +A Y + L + FG+ G TLFASL +S + LTTLDT TRL RFAWQE
Sbjct: 386 AVPRYAVGYGYTLAKTFEMFGVGFDTGYSFFTLFASLMLSMYVLTTLDTGTRLARFAWQE 445
Query: 456 IIEMVKGPE-----ILKNKWVASFILVFFGIALA---------WKGKWLVIWPAFSGMNQ 501
+ + + + I+ NKWV+S +V G ALA +K + V+WPAF+G NQ
Sbjct: 446 LFDWLANVDKNLYSIVTNKWVSSLAVVIIGSALAYPVLEIGAGYKAAYNVVWPAFAGANQ 505
Query: 502 MLASIAMMTASLWVAKIQRPSGFWKWAVLIPALFLWVTVTSALIWFLIYV---------- 551
MLA+IA++T++LWV + G +L+P+LFLWVTVT+ L W+L+ +
Sbjct: 506 MLAAIALLTSALWVYGVLNVRGGTGLLILLPSLFLWVTVTAGLTWWLMVILPVLPAIQQF 565
Query: 552 GKSSIWVSLITIVGLVLNFLLVIDWYNAWKKPAEEYQAAAA 592
G S + L T++ +L F L I +N K A Q A A
Sbjct: 566 GAGS--MILFTLLLSLLLFALFIINFNKLSKQAGASQQAQA 604
>sp|O67304|CSTA_AQUAE CARBON STARVATION PROTEIN A HOMOLOG >gi|7444679|pir||E70409 carbon
starvation protein cstA [similarity] - Aquifex aeolicus
>gi|2983694|gb|AAC07258.1| (AE000731) carbon starvation
protein A [Aquifex aeolicus]
Length = 555
Score = 330 bits (837), Expect = 3e-89
Identities = 216/598 (36%), Positives = 320/598 (53%), Gaps = 63/598 (10%)
Query: 1 MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
M++ +I A ++Y YF Y K L K+ + D +RPTPA + DGVDYVP + +L GH
Sbjct: 1 MHALPLIGIAFLLYAFGYFVYSKYLAEKIFQLDDSRPTPAKEINDGVDYVPTNKWILLGH 60
Query: 61 HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
HF SI GAGPIVGPA+A+ WGWLP+ +WV G VFIG VHD+ AL++S+R+ GKSI I
Sbjct: 61 HFTSITGAGPIVGPAIAVIWGWLPAFLWVVLGAVFIGGVHDFTALVTSIRHKGKSIGTIL 120
Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLY 180
G+ ++ + F L + ILV A FA VI+ +FVK P + + L + +AV+ G+ +Y
Sbjct: 121 GEYAGEKARVLFLLLLLALAILVNAVFAYVISLLFVKYPSSVLPAWLVIPLAVIFGFSVY 180
Query: 181 KVQINFKVGTIIGIILLIIAIYIGFKFPL----------VASAKAWYIFLGAYVIVASSL 230
++++NF + T+I + +L IY+G P+ ++ W I L Y ASSL
Sbjct: 181 RLRVNFLILTVIFLSILYFGIYLGSVSPIDVKPLAESLGLSPIMLWIIVLFTYAFFASSL 240
Query: 231 PVWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPSPFW 290
PVWVLLQPRD+LN L L+L + I K APA G P P +
Sbjct: 241 PVWVLLQPRDFLNGLQLLILLILLYIGAVIANPK----IVAPAVNLNPE----GAP-PIF 291
Query: 291 PTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIAVYG 350
P + + IACGALSGFH+LV SGTSSKQL+ E VGY G E L+ VI
Sbjct: 292 PFLFITIACGALSGFHALVSSGTSSKQLEKESDARAVGYLGFMGESSLALAVI------- 344
Query: 351 LQIFHNAGIGI-TAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGTVIGKVGIFAS 409
I AGI + +AE + + Y+ + KS + VA ++ N
Sbjct: 345 --IATTAGIAMFSAEKFQELYSSWSSIKSSSL-------VAVVDGGAN------------ 383
Query: 410 SYAHGLHDAFGIDIHLGTLFASLWVSAFALTTLDTATRLGRFAWQEIIEMVKGPEILKNK 469
L A GI + G + V FA TT+DT+ R+ R+ E+ E + G +L N
Sbjct: 384 -----LLGAVGIPVDFGKTVIATLVVLFAATTMDTSVRIQRYILGELGE-IYGVRLLTNP 437
Query: 470 WVASFILVFFGIALAWK---GK-WLVIWPAFSGMNQMLASIAMMTASLWVAKIQRPSGFW 525
WVAS + V +AL GK +V WP F NQ+LA +A++ L++ ++ RP+
Sbjct: 438 WVASGVAVLTSMALVLSKEGGKGGMVFWPVFGAANQLLAGLALLIGYLYLKRVNRPT--- 494
Query: 526 KWAVLIPALF-LWVTVTSALIWFLIYVGKSSIWVSLITIVGLVLNFLLVIDWYNAWKK 582
+LIP +F L++T + + + K + + ++ + L+L ++ + + A ++
Sbjct: 495 -LPILIPMIFVLFITSLAMAMNAWNNLMKGDLLLFSVSFIILLLEMFIIFESFRAVRR 551
>dbj|BAB05512.1| (AP001513) carbon starvation-induced protein [Bacillus halodurans]
Length = 580
Score = 284 bits (720), Expect = 2e-75
Identities = 194/604 (32%), Positives = 300/604 (49%), Gaps = 91/604 (15%)
Query: 6 VILAAA--IIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGHHFA 63
V+LAA +++ Y Y K + ++ R DPN TPAH+ DG D+VP + VL+GHHF
Sbjct: 4 VLLAALGMLVFALGYRYYSKFIAERIYRLDPNFVTPAHQFKDGKDFVPTNKFVLWGHHFT 63
Query: 64 SIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIAGKL 123
S+AGA PIVGPA+A+ WGWLP+++WV G VF VHD+ AL+ SVR G+S+ +A KL
Sbjct: 64 SVAGAAPIVGPAIAIYWGWLPAILWVTLGTVFAAGVHDFGALVLSVRNKGQSVGTLADKL 123
Query: 124 MSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLYKVQ 183
+ ++ + F + +++V A FA VI+ +F+ P A + + + +AV +G+ +YK Q
Sbjct: 124 IGRQAKLLFLFIILILVLMVNAVFAWVISNLFISNPSAVLSVFIQIPLAVWIGYHVYKRQ 183
Query: 184 INFKVGTIIGIILLIIAIYIGFKFP-----------------------LVASAKAWYIFL 220
+ +++ + ++ ++ + + P + S W I L
Sbjct: 184 GGMLIPSLVALAVMYVSAIVASRVPALQIDLIRYFGGEENIVAFGLDGVAMSFFVWIIVL 243
Query: 221 GAYVIVASSLPVWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAH 280
YV +AS+LPVW LLQPRDY+N++ L GL++ L K TAPA
Sbjct: 244 MIYVYIASTLPVWKLLQPRDYINSHQLVVGLLILYLGLLFSNPK----VTAPA------- 292
Query: 281 VVGGKPSPFW-PTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLS 339
V G P W P + + IACGA+SGFH LV SGT+SKQL+ E VGY G EG L+
Sbjct: 293 -VNGSPDTSWFPLLFITIACGAISGFHGLVSSGTTSKQLNKETDARFVGYLGAIGEGLLA 351
Query: 340 TIVISSIAVYGLQIFHNAGIGITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGT 399
IVI ++A + + + +++ Y+ AA L NF
Sbjct: 352 LIVIVAVATFFA----------SPQAFSEVYSSFGAANQ-----------GGLGNFVQA- 389
Query: 400 VIGKVGIFASSYAHGLHDAFGIDIHLGTLFASLWVSAFALTTLDTATRLGRFAWQEIIEM 459
A A GL I + ++ + +FA TTLDT+ RL R+ E+ +
Sbjct: 390 --------AGQLATGLL----IPQDMAATIVAVIIVSFAATTLDTSVRLMRYIIAELGQE 437
Query: 460 VKGPEILKNKWVASFILVFFGIALAW---------KGKWLVIWPAFSGMNQMLASIAMMT 510
K P + K VA+ I V AL G +L +WP F NQ+LA I ++
Sbjct: 438 YKVPALSKTH-VATSIAVVSSAALVLLPEGPNGFGSGGYL-LWPLFGTSNQLLAGITLLL 495
Query: 511 ASLWVAKIQRPSGFWKWAVLIPALFLWVTVTSALIWFLIY----VGKSSIWVSLITIVGL 566
++W+ + G LIP +F+ A++ +++ G + + L T+ +
Sbjct: 496 ITIWLKR----QGRNYLPTLIPMVFVLFMTLYAMLQQVLFQWSPFGGTGTNILLFTLGSI 551
Query: 567 VLNF 570
+L F
Sbjct: 552 ILVF 555
>pir||E81865 carbon starvation protein A homolog NMA1698 [similarity] -
Neisseria meningitidis (group A strain Z2491)
>gi|7380339|emb|CAB84926.1| (AL162756) putative integral
membrane protein (CstA-like) [Neisseria meningitidis
Z2491]
Length = 693
Score = 271 bits (686), Expect = 1e-71
Identities = 206/602 (34%), Positives = 304/602 (50%), Gaps = 77/602 (12%)
Query: 6 VILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGHHFASI 65
++ AA +Y Y Y + N+V+R DPNR TPA R DG+DYVP H VL+GHHFA+I
Sbjct: 37 MVTAAISVYCIAYRFYSLYIANRVMRLDPNRLTPAERHNDGLDYVPTHKGVLFGHHFAAI 96
Query: 66 AGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIAGKLMS 125
AGAGP+VGP +A G+LP +W+ FG VF GAV D + L S+R DGKS+ I + +
Sbjct: 97 AGAGPLVGPVLAAQMGYLPGTLWIIFGVVFAGAVQDMIVLFVSMRRDGKSLGDIVKQELG 156
Query: 126 KRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLYKVQIN 185
+ + + +++++A A ++ V +P + IA+ +G +Y I
Sbjct: 157 TVPGVIASIGILMIMVIIMAVLALIVVKALVHSPWGTFTIAATMPIALFMG--IYTRYIR 214
Query: 186 -FKVG--TIIGIILLIIAIY---------IGFKFPLVASAKAWYIFLGAYVIVASSLPVW 233
K+G +I+G ILL++A+ IG F L W I + Y VAS LPVW
Sbjct: 215 PGKIGEISIVGFILLMLAVIYGEDVAKSSIGHWFDLDGIQLTWAIMI--YGFVASVLPVW 272
Query: 234 VLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVG-TFTAPAYTTF---SAHVVGGKPSPF 289
+LL PRDYL+ + L +G +A +G V T PA T F S V G PF
Sbjct: 273 LLLTPRDYLSTF-----LKIGTIAALALGIVIVNPTLQMPAVTHFIDGSGPVFSGALFPF 327
Query: 290 WPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIA-- 347
+ + IACGA+SGFH+L+ SGT+ K L+NE H ++GYGGM E F++ + +++ A
Sbjct: 328 ---LFITIACGAVSGFHALISSGTTPKMLENETHVRMIGYGGMLMESFVAIMALAAAASL 384
Query: 348 ---VYGLQIFHNAGIGITAETWAQAYAPLVAAKSITTETLQKLGVAAL----ENFKNGTV 400
VY A IG A T AA+ ITT+ + A L + T+
Sbjct: 385 DPGVYFAMNSPAALIGTDANT---------AAEVITTKLQFPVDAATLLHTAKEVGENTI 435
Query: 401 IGKVG---IFASSYAHGLHDAFGIDIHLGTL--FASLWVSAFALTTLDTATRLGRFAWQE 455
+ + G A AH + + + FA L+ + F LT +D TR+ RF Q+
Sbjct: 436 LSRAGGAPTLAVGMAHIMSRLIPGEAMMAFWYHFALLFEALFILTAVDAGTRVARFMIQD 495
Query: 456 IIEMVKGPEILKNKWVASFILVFFGIALAWKGKWLV------------IWPAFSGMNQML 503
+ + P + A+ I FF +AL W G +L +WP F NQML
Sbjct: 496 LGSIFYKPFGNTDSIPANLIATFFAVAL-W-GYFLYTGVTDPLGGINSLWPLFGIANQML 553
Query: 504 ASIAMMTASLWVAKIQRPSGFWKWAVLIPAL-FLWVTVTSAL---------IWFLIYVGK 553
A +A++ ++ + K++R + W VL+PA+ L+VT + L I FL + GK
Sbjct: 554 AGVALIMCAVVLIKMKRDR--YVWVVLVPAVGVLFVTCYAGLQKLFHSDPRISFLAHTGK 611
Query: 554 SS 555
S
Sbjct: 612 YS 613
>pir||C81078 carbon starvation protein A homolog NMB1493 [similarity] -
Neisseria meningitidis (group B strain MD58)
>gi|7226734|gb|AAF41849.1| (AE002498) carbon starvation
protein A [Neisseria meningitidis MC58]
Length = 693
Score = 267 bits (676), Expect = 2e-70
Identities = 204/602 (33%), Positives = 303/602 (49%), Gaps = 77/602 (12%)
Query: 6 VILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGHHFASI 65
++ AA +Y Y Y + N+V+R DP+R TPA R DG+DYVP H VL+GHHFA+I
Sbjct: 37 MVTAAISVYCIAYRFYSLYIANRVMRLDPDRLTPAERHNDGLDYVPTHKGVLFGHHFAAI 96
Query: 66 AGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIAGKLMS 125
AGAGP+VGP +A G+LP +W+ FG VF GAV D + L S+R DGKS+ I + +
Sbjct: 97 AGAGPLVGPVLAAQMGYLPGTLWIIFGVVFAGAVQDMMVLFVSMRRDGKSLGDIVKQELG 156
Query: 126 KRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLYKVQIN 185
+ + + +++++A A ++ V +P + IA+ +G +Y I
Sbjct: 157 TVPGVIASIGILMIMVIIMAVLALIVVKALVHSPWGTFTIAATMPIALFMG--IYTRYIR 214
Query: 186 -FKVG--TIIGIILLIIAIY---------IGFKFPLVASAKAWYIFLGAYVIVASSLPVW 233
K+G +I+G ILL++A+ IG F L W I + Y VAS LPVW
Sbjct: 215 PGKIGEISIVGFILLMLAVIYGEDVAKSSIGHWFDLDGIQLTWAIMI--YGFVASVLPVW 272
Query: 234 VLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVG-TFTAPAYTTF---SAHVVGGKPSPF 289
+LL PRDYL+ + L +G +A +G V PA T F S V G PF
Sbjct: 273 LLLTPRDYLSTF-----LKIGTIAALALGIVIVNPALQMPAVTHFIDGSGPVFSGALFPF 327
Query: 290 WPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIA-- 347
+ + IACGA+SGFH+L+ SGT+ K L+NE H ++GYGGM E F++ + +++ A
Sbjct: 328 ---LFITIACGAVSGFHALISSGTTPKMLENETHVRMIGYGGMLMESFVAIMALAAAASL 384
Query: 348 ---VYGLQIFHNAGIGITAETWAQAYAPLVAAKSITTETLQKLGVAAL----ENFKNGTV 400
VY A IG A T AA+ ITT+ + A L + T+
Sbjct: 385 DPGVYFAMNSPAALIGTDANT---------AAEVITTKLQFPVDAATLLHTAKEVGENTI 435
Query: 401 IGKVG---IFASSYAHGLHDAFGIDIHLGTL--FASLWVSAFALTTLDTATRLGRFAWQE 455
+ + G A AH + + + FA L+ + F LT +D TR+ RF Q+
Sbjct: 436 LSRAGGAPTLAVGMAHIMSRLIPGEAMMAFWYHFALLFEALFILTAVDAGTRVARFMIQD 495
Query: 456 IIEMVKGPEILKNKWVASFILVFFGIALAWKGKWLV------------IWPAFSGMNQML 503
+ + P + A+ I FF +AL W G +L +WP F NQML
Sbjct: 496 LGSIFYKPFGNTDSIPANLIATFFAVAL-W-GYFLYTGVTDPLGGINSLWPLFGIANQML 553
Query: 504 ASIAMMTASLWVAKIQRPSGFWKWAVLIPAL-FLWVTVTSAL---------IWFLIYVGK 553
A +A++ ++ + K++R + W VL+PA+ L+VT + L I FL + GK
Sbjct: 554 AGVALIMCAVVLIKMKRDR--YVWVVLVPAVGVLFVTCYAGLQKLFHSDPRISFLAHAGK 611
Query: 554 SS 555
S
Sbjct: 612 YS 613
>sp|P94532|CSTA_BACSU CARBON STARVATION PROTEIN A HOMOLOG >gi|7444676|pir||A69609 carbon
starvation protein cstA [similarity] - Bacillus subtilis
>gi|1770023|emb|CAA99596.1| (Z75208) carbon starvation
induced protein [Bacillus subtilis]
>gi|2635336|emb|CAB14831.1| (Z99118) carbon
starvation-induced protein [Bacillus subtilis]
Length = 598
Score = 263 bits (664), Expect = 6e-69
Identities = 191/619 (30%), Positives = 302/619 (47%), Gaps = 53/619 (8%)
Query: 1 MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
MN+ +++A+ I Y YG + KV++ + ++PTPAH L DG DYVP + V +GH
Sbjct: 1 MNAVTIVIASMCILAIAYRLYGTFMMVKVLKVNDDKPTPAHALEDGKDYVPTNKWVSFGH 60
Query: 61 HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
HFA+IA AGP+VGP +A +G+LP L+W+ G V GAVHD + L +S+R +GKS+ +A
Sbjct: 61 HFAAIAAAGPLVGPILAAQFGYLPGLLWLLIGAVIGGAVHDIVVLFASMRKNGKSLSEVA 120
Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLY 180
+ L + F + + +A + V+ + P A + + IA+ +G L Y
Sbjct: 121 KDELGPVAGFCTGLSMLFIITITMAGLSMVVLHALERNPWGTFAVGITIPIAMGVG-LFY 179
Query: 181 KVQINFKVGTIIGIILLIIAIYIG-------FKFPLVASAKAWYIFLGAYVIVASSLPVW 233
K N K+ + +G + L+ ++IG L K I L Y A++LPVW
Sbjct: 180 KKTGNLKLASTVGFLFLMAGVFIGPWVQTTALGDFLTLDTKTLAIALPVYAFFAAALPVW 239
Query: 234 VLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVG-TFTAPAYTTFSAHVVGGKP---SPF 289
+LL PRDYL+++ + +G I+G V + PA+T F V GG P P
Sbjct: 240 LLLAPRDYLSSF-----MKIGVFIALIVGVFVVNPSIPFPAFTEF---VKGGGPVLAGPV 291
Query: 290 WPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIAVY 349
WP I + IACGA+SGFH+ VGSGT+ K L+ V +G M E + +++ IA
Sbjct: 292 WPFISITIACGAISGFHAFVGSGTTPKMLNKWSDMKPVAFGAMLVECLVG--IMALIAAT 349
Query: 350 GLQIFHNAGIGITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGTVIGKVGIFAS 409
LQ I T E + +V ++ E +G+ LE G V VG+
Sbjct: 350 ALQPADYFAINSTPEVFRTLGMNVVHLPELSGE----IGL-DLEGRTGGAVTLAVGM--- 401
Query: 410 SYAHGLHDAFGIDIHLGTL---FASLWVSAFALTTLDTATRLGRFAWQEIIEMVKGPEIL 466
+Y + HL + F ++ + F LT +D TR+ R+ Q+ V P +
Sbjct: 402 TY---IFTGMPFFSHLASYFFQFVIMFEAVFILTAIDAGTRVARYLIQDFFGEVYKP-LK 457
Query: 467 KNKWVASFILVFFGIALAW-----KGKWLVIWPAFSGMNQMLASIAMMTASLWVAKIQRP 521
K W+ + L W G IW F N+++AS+ ++ + V KI
Sbjct: 458 KTDWIPGSVFASALACLMWGYLLYSGDIGSIWALFGVSNRLMASVGLIIGATIVLKIADK 517
Query: 522 SGFWKWAVLIPALFLWVTVTSALIWFL--IYVGKS----SIWVSLITIVGLVLNFLLVI- 574
+ LIP +L+VTV A W + +Y+ S+ +++I+ LVL F++++
Sbjct: 518 RRY-ILTCLIPLAYLYVTVNYAGYWMVRNVYLNPEAAGYSVLNGVLSIIMLVLGFIIIVA 576
Query: 575 ---DWYNAWKKPAEEYQAA 590
W WK P+ +A+
Sbjct: 577 AVKKWAQMWKDPSLRMEAS 595
>sp|P15078|CSTA_ECOLI CARBON STARVATION PROTEIN A >gi|7429186|pir||Q0ECNA carbon
starvation protein A - Escherichia coli
>gi|1778515|gb|AAB40798.1| (U82598) carbon starvation
protein [Escherichia coli] >gi|1786814|gb|AAC73699.1|
(AE000165) carbon starvation protein [Escherichia coli
K12]
Length = 701
Score = 259 bits (655), Expect = 6e-68
Identities = 190/585 (32%), Positives = 297/585 (50%), Gaps = 62/585 (10%)
Query: 1 MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
+N+ +++A+ IY+ Y YG + V+ DP R TPA R DG+DYVP VL+GH
Sbjct: 32 INALWIVVASVCIYLIAYRFYGLYIAKNVLAVDPTRMTPAVRHNDGLDYVPTDKKVLFGH 91
Query: 61 HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
HFA+IAGAGP+VGP +A G+LP +IW+ G V GAV D++ L S R DG+S+ +
Sbjct: 92 HFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELV 151
Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLG-WLL 179
+ M + + + +++++A A ++ +P + +A+ +G +L
Sbjct: 152 KEEMGPTAGVIALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLALFMGIYLR 211
Query: 180 YKVQINFKVGTIIGIILLIIAIYIGFKFPLVASAKAW---YIFLG--------AYVIVAS 228
Y ++IG++ LI AI G VA + W + F G Y VA+
Sbjct: 212 YLRPGRIGEVSVIGLVFLIFAIISG---GWVAESPTWAPYFDFTGVQLTWMLVGYGFVAA 268
Query: 229 SLPVWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPSP 288
LPVW+LL PRDYL+ + L G ++ GLA I+ + T T PA T F V G P
Sbjct: 269 VLPVWLLLAPRDYLSTF-LKIGTIV-GLAVGILIMR--PTLTMPALTKF----VDG-TGP 319
Query: 289 FW-----PTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVI 343
W P + + IACGA+SGFH+L+ SGT+ K L NE +GYGGM E F++ + +
Sbjct: 320 VWTGNLFPFLFITIACGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMAL 379
Query: 344 SSIAVY--GLQIFHNAGIGI-----TAETWAQAYAPLVAA--KSITTETLQKLGVAALEN 394
S + G+ N+ + + TA+ A A A +V++ SIT +TL ++ E
Sbjct: 380 VSACIIDPGVYFAMNSPMAVLAPAGTADVVASA-AQVVSSWGFSITPDTLNQIASEVGEQ 438
Query: 395 FKNGTVIGKVG---IFASSYAHGLHDAFG--IDIHLGTLFASLWVSAFALTTLDTATRLG 449
++I + G A A+ LH A G +D+ FA L+ + F LT +D TR
Sbjct: 439 ----SIISRAGGAPTLAVGMAYILHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAA 494
Query: 450 RFAWQEIIEMVKGPEILKNKWVASFILVFFGIALAW-----------KGKWLVIWPAFSG 498
RF Q+++ +V P + + + + +L LAW G +WP F
Sbjct: 495 RFMLQDLLGVV-SPGLKRTDSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGI 553
Query: 499 MNQMLASIAMMTASLWVAKIQRPSGFWKWAVLIPALFLWVTVTSA 543
NQMLA +A+M ++ + K++R + W L+P +L + +A
Sbjct: 554 ANQMLAGMALMLCAVVLFKMKRQR--YAWVALVPTAWLLICTLTA 596
>pir||D81365 carbon starvation protein A homolog Cj0917c [similarity] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968354|emb|CAB73174.1| (AL139076) carbon starvation
protein A homolog [Campylobacter jejuni]
Length = 703
Score = 255 bits (644), Expect = 1e-66
Identities = 187/572 (32%), Positives = 289/572 (49%), Gaps = 50/572 (8%)
Query: 1 MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
+++ +++AA IY+ Y YG + KV+ D NR TPA DG D+VP + VL+GH
Sbjct: 32 VSAIYLVVAAVCIYMIGYRFYGSFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGH 91
Query: 61 HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
HFA+IAGAGP+VGP +A G+LPS++W+ G V GAVHD++ L S R G+S+ +
Sbjct: 92 HFAAIAGAGPLVGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMI 151
Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLY 180
M K T + ++ ++++IA A V+ ++P + + IA+ +G +
Sbjct: 152 KDEMGKFTGGVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMR 211
Query: 181 KVQINFKVG--TIIGIILLIIAIYIGFKFPLVASAKAW-----------YIFLGAYVIVA 227
++ +VG +IIG +LLI+AI+ G ++A+ W I + AY +A
Sbjct: 212 FIRPG-RVGEASIIGFVLLILAIHYG---SVIAADPYWAKIFTLEAPTLAIVMMAYGFIA 267
Query: 228 SSLPVWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPS 287
S LPVW LL PRDYL+ ++ +V+ +A ++ Y + V G
Sbjct: 268 SVLPVWFLLAPRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFDGTGPVFAGGVF 327
Query: 288 PFWPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLS--TIVISS 345
PF + + IACGA+SGFH+L+ SGT+ K L+NE H L VGYG M E ++ ++ +
Sbjct: 328 PF---LFITIACGAISGFHALISSGTTPKMLENETHTLAVGYGSMLAESAVAIMALICAC 384
Query: 346 IAVYGLQIFHNAG---IGITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGTVIG 402
I GL N+ IG AQ + SIT E + L N T++
Sbjct: 385 ILHPGLYFAINSSSALIGTDVVNVAQTISSW--GFSITPEEITTL----TTNIGEYTILS 438
Query: 403 KVG---IFASSYAHGLHDAF-GIDI-HLGTLFASLWVSAFALTTLDTATRLGRFAWQEII 457
+ G FA A LH+ F G+D+ FA L+ + F LT +D TR RF Q+I+
Sbjct: 439 RTGGAPTFAIGVALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDIL 498
Query: 458 EMVKGPEILKNKWVASFILVFFGIALAW-----------KGKWLVIWPAFSGMNQMLASI 506
V P + + A + +A W KG +WP F NQMLA +
Sbjct: 499 GNVYKPLGDIHNYPAGLLATALSVA-GWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGM 557
Query: 507 AMMTASLWVAKIQRPSGFWKWAVLIPALFLWV 538
A++ A+ + K+ + + W L+PA+F+ V
Sbjct: 558 ALLLATTILVKMGKAR--YTWVTLVPAVFVLV 587
>pir||H83070 conserved hypothetical protein PA4606 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950856|gb|AAG07994.1|AE004874_7 (AE004874)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 688
Score = 252 bits (638), Expect = 6e-66
Identities = 182/584 (31%), Positives = 291/584 (49%), Gaps = 65/584 (11%)
Query: 1 MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
+N+ +++AA IY+ Y Y + +KV++ DPNR TPA DG+DYVP + +L+GH
Sbjct: 35 INALWIVVAAVAIYLVAYRYYSLFIASKVMQLDPNRATPAVLNNDGLDYVPTNKHILFGH 94
Query: 61 HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
HFA+IAGAGP+VGP +A G+LP +W+ G V GAV D++ L S R +G+S+ +
Sbjct: 95 HFAAIAGAGPLVGPVLAAQMGYLPGTLWLIAGVVLAGAVQDFMVLFISSRRNGRSLGELV 154
Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLY 180
+ M + + +I+++A A ++ +P + + IA+ +G +
Sbjct: 155 REEMGQVAGTIALFGAFLIMIIILAVLALIVVKALADSPWGMFTVLATIPIALFMGVYMR 214
Query: 181 KVQINFKVG--TIIGIILLIIAIYIGFKFPLVASAKAW---YIFLG--------AYVIVA 227
++ ++G +IIG+ LL+ +I++G + VA++ W + F G Y VA
Sbjct: 215 FIRPG-RIGEISIIGVFLLLGSIWLGGQ---VAASPEWAPHFTFSGIQITWMLIGYGAVA 270
Query: 228 SSLPVWVLLQPRDYLNAYILWFGLVLG-GLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKP 286
S LPVW+LL PRDYL+ + L G ++G + I+ + PA T F+
Sbjct: 271 SVLPVWLLLAPRDYLSTF-LKIGTIIGLAIGILIV----MPELKMPALTQFTDGTGPVWK 325
Query: 287 SPFWPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLS--TIVIS 344
+P + + IACGA+SGFH+L+ SGT+ K L+ E +GYGGM E F++ +V +
Sbjct: 326 GSLFPFLFITIACGAVSGFHALISSGTTPKLLNREPDARYIGYGGMLMESFVAIMAMVAA 385
Query: 345 SIAVYGLQIFHNA----------GIGITAETWAQAYAPLVAAKSITTETLQKLGVAALEN 394
S+ G+ N+ + T +W A P T+T Q +G +
Sbjct: 386 SVIEPGIYFAMNSPPAVVGADVNAVAATVSSWGFAITP-----EQLTQTAQDIGETTILA 440
Query: 395 FKNGTVIGKVGIFASSYAHGLHDAFGIDIHLGTL--FASLWVSAFALTTLDTATRLGRFA 452
G VGI AH LH + + FA L+ + F LT +D TR GRF
Sbjct: 441 RAGGAPTLAVGI-----AHILHQVLPGENTMAFWYHFAILFEALFILTAVDAGTRAGRFM 495
Query: 453 WQEIIEMVKGPEILKNKWVASFILVFFGIALAWKGKWLV-------------IWPAFSGM 499
Q+++ W A+ I +AL W WL+ +WP F
Sbjct: 496 LQDLLGNFVPALKKTESWTANIIGTGGCVAL-W--GWLLYQGVVDPLGGINTLWPLFGIS 552
Query: 500 NQMLASIAMMTASLWVAKIQRPSGFWKWAVLIPALFLWVTVTSA 543
NQMLA IA+M A++ + K++R + W ++PA +L + T+A
Sbjct: 553 NQMLAGIALMLATVVLIKMKRQQ--YVWVTILPAAWLLICTTTA 594
>gb|AAF69024.1| (AF182514) unknown [Pseudomonas putida]
Length = 767
Score = 245 bits (618), Expect = 1e-63
Identities = 174/577 (30%), Positives = 290/577 (50%), Gaps = 51/577 (8%)
Query: 1 MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
+N+ +++AA IY+ Y Y + KV+ DP R TPA DG+DYVP + +L+GH
Sbjct: 35 INALWIVVAAVAIYLVAYRYYSLFIAXKVMXLDPRRATPAVLNXDGLDYVPTNKHILFGH 94
Query: 61 HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
HFA+IAGAGP+VGP +A G+LP +W+ G V GAV D++ L S R +G+S+ +
Sbjct: 95 HFAAIAGAGPLVGPVLAAQMGYLPGTLWLIAGVVLAGAVQDFMVLFLSTRRNGRSLGDMV 154
Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLY 180
+ M + + +I+++A A ++ ++P + + IA+ +G +
Sbjct: 155 REEMGRIPGTIALFGCFLIMIIILAVLALIVVKALAESPWGMFTVMATIPIAMFMGIYMR 214
Query: 181 KVQINFKVG--TIIGIILLIIAIYIGFKFPLVASAKAW---YIFLG--------AYVIVA 227
++ ++G +++G++LL+ +I++G ++A+ W + F G Y VA
Sbjct: 215 YIRPG-RIGEISVVGVVLLLASIWLG---GVIAADPVWGPAFTFTGVQITWMLVGYGFVA 270
Query: 228 SSLPVWVLLQPRDYLNAYILWFGLVLG-GLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKP 286
+ LPVW++L PRDYL+ + L G +LG + II PA T F+
Sbjct: 271 AVLPVWLVLAPRDYLSTF-LKIGTILGLAIGILII----APELKMPALTQFTDGTGPVWK 325
Query: 287 SPFWPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLS--TIVIS 344
+P + + IACGA+SGFH+L+ SGT+ K LDNE + +GYGGM E F++ +V +
Sbjct: 326 GTLFPFLFITIACGAVSGFHALISSGTTPKLLDNETNARYIGYGGMLMESFVAIMAMVAA 385
Query: 345 SIAVYGLQIFHNAGIGITAETWAQAYAPLVAAKS--ITTETLQKLGVAALENFKNGTVIG 402
S+ G+ N+ + T + A V++ IT E L+ A + T++
Sbjct: 386 SVIEPGVYFAMNSPAAVVG-TDVASVAQTVSSWGFLITPEQLE----AVARDIGEHTILA 440
Query: 403 KVG---IFASSYAHGLHDAFGIDIHLGTL--FASLWVSAFALTTLDTATRLGRFAWQEII 457
+ G A A LH + + FA L+ + F LT +D TR GRF Q+++
Sbjct: 441 RAGGAPTLAVGIAQILHQVLPGENTMAFWYHFAILFEALFILTAVDAGTRAGRFMLQDLL 500
Query: 458 EMVKGPEILKNKWVASFILVFFGIALAW-----------KGKWLVIWPAFSGMNQMLASI 506
P + + + + +L G W G +WP F NQMLA I
Sbjct: 501 GSFV-PALKRTESWGANLLATAGCVALWGYLLYQGVIDPLGGINTLWPLFGISNQMLAGI 559
Query: 507 AMMTASLWVAKIQRPSGFWKWAVLIPALFLWVTVTSA 543
A+M ++ + K++ + W L+PA++L + T+A
Sbjct: 560 ALMLGTVVLIKMKAQR--YIWVTLLPAVWLLICTTAA 594
>pir||S14411 carbon starvation protein - Escherichia coli
>gi|41081|emb|CAA37086.1| (X52904) carbon starvation
gene product (AA 1-562) [Escherichia coli]
Length = 562
Score = 235 bits (593), Expect = 1e-60
Identities = 171/516 (33%), Positives = 265/516 (51%), Gaps = 49/516 (9%)
Query: 1 MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
+N+ +++A+ IY+ Y YG + V+ DP R TPA R DG+DYVP VL+GH
Sbjct: 32 INALWIVVASVCIYLIAYRFYGLYIAKNVLAVDPTRMTPAVRHNDGLDYVPTDKKVLFGH 91
Query: 61 HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
HFA+IAGAGP+VGP +A G+LP +IW+ G V G V D++ L S R DG+S+ +
Sbjct: 92 HFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGGVQDFMVLFVSTRRDGRSLGELV 151
Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLG-WLL 179
+ M + + + +++++A A ++ +P + +A+ +G +L
Sbjct: 152 KEEMGPTAGVIALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLALFMGIYLR 211
Query: 180 YKVQINFKVGTIIGIILLIIAIYIGFKFPLVASAKAW---YIFLG--------AYVIVAS 228
Y ++IG++ LI AI G VA + W + F G Y VA+
Sbjct: 212 YLRPGRIGEVSVIGLVFLIFAIISG---GWVAESPTWAPYFDFTGVQLTWMLVGYGFVAA 268
Query: 229 SLPVWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPSP 288
LPVW+LL PRDYL+ + L G ++ GLA I+ + T T PA T F V G P
Sbjct: 269 VLPVWLLLAPRDYLSTF-LKIGTIV-GLAVGILIMR--PTLTMPALTKF----VDG-TGP 319
Query: 289 FW-----PTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVI 343
W P + + IACGA+SGFH+L+ SGT+ K L NE +GYGGM E F++ + +
Sbjct: 320 VWTGNLFPFLFITIACGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMAL 379
Query: 344 SSIAVY--GLQIFHNAGIGI-----TAETWAQAYAPLVAA--KSITTETLQKLGVAALEN 394
S + G+ N+ + + TA+ A A A +V++ SIT +TL ++ E
Sbjct: 380 VSACIIDPGVYFAMNSPMAVLAPAGTADVVASA-AQVVSSWGFSITPDTLNQIASEVGEQ 438
Query: 395 FKNGTVIGKVG---IFASSYAHGLHDAFG--IDIHLGTLFASLWVSAFALTTLDTATRLG 449
++I + G A A+ LH A G +D+ FA L+ + F LT +D TR
Sbjct: 439 ----SIISRAGGAPTLAVGMAYILHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAA 494
Query: 450 RFAWQEIIEMVKGPEILKNKWVASFILVFFGIALAW 485
RF Q+++ +V P + + + + +L LAW
Sbjct: 495 RFMLQDLLGVV-SPGLKRTDSLPANLLATALCVLAW 529
>sp|P39396|YJIY_ECOLI HYPOTHETICAL 77.9 KD PROTEIN IN MRR-TSR INTERGENIC REGION
>gi|1361118|pir||S56580 carbon starvation protein A
homolog yjiY - Escherichia coli
>gi|537196|gb|AAA97251.1| (U14003) ORF_f721 [Escherichia
coli] >gi|1790814|gb|AAC77310.1| (AE000506) putative
carbon starvation protein [Escherichia coli K12]
Length = 721
Score = 234 bits (590), Expect = 3e-60
Identities = 186/599 (31%), Positives = 289/599 (48%), Gaps = 82/599 (13%)
Query: 6 VILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGHHFASI 65
+++A+ +Y+ Y Y + KV++ DP R TPA DG++YVP + VL+GHHFA+I
Sbjct: 44 IVVASVSVYLVAYRYYSLYIAQKVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHFAAI 103
Query: 66 AGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIAGKLMS 125
AGAGP+VGP +A G+LP +W+ G V GAV D++ L S R +G S+ + + M
Sbjct: 104 AGAGPLVGPVLAAQMGYLPGTLWLLAGVVLAGAVQDFMVLFISSRRNGASLGEMIKEEMG 163
Query: 126 KRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLYKVQIN 185
+ +I+++A A ++ ++P + IA+ +G + ++
Sbjct: 164 PVPGTIALFGCFLIMIIILAVLALIVVKALAESPWGVFTVCSTVPIALFMGIYMRFIRPG 223
Query: 186 FKVG--TIIGIILLIIAIYIG-------FKFPLVASAKAWYIF-LGAYVIVASSLPVWVL 235
+VG ++IGI+LL+ +IY G + P + F L Y V++ LPVW++
Sbjct: 224 -RVGEVSVIGIVLLVASIYFGGVIAHDPYWGPALTFKDTTITFALIGYAFVSALLPVWLI 282
Query: 236 LQPRDYLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPSPFW----- 290
L PRDYL A L G+++ GLA I+ PA T + + G P W
Sbjct: 283 LAPRDYL-ATFLKIGVIV-GLALGIVVLN--PELKMPAMTQY----IDG-TGPLWKGALF 333
Query: 291 PTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLS--TIVISSIAV 348
P + + IACGA+SGFH+L+ SGT+ K L NE +GYG M E F++ +V +SI
Sbjct: 334 PFLFITIACGAVSGFHALISSGTTPKLLANETDARFIGYGAMLMESFVAIMALVAASIIE 393
Query: 349 YGLQIFHN---AGIGITAETWAQ---AYAPLVAA--KSITT------------------- 381
GL N AG+GIT + AP++ A K +T
Sbjct: 394 PGLYFAMNTPPAGLGITMPNLHEMGGENAPIIMAQLKDVTAHAAATVSSWGFVISPEQIL 453
Query: 382 ETLQKLGVAALENFKNGTVIGKVGIFASSYAHGLHDA-----FGIDIHLGTLFASLWVSA 436
+T + +G ++ N G VGI AH H G H G LF +L
Sbjct: 454 QTAKDIGEPSVLNRAGGAPTLAVGI-----AHVFHKVLPMADMGFWYHFGILFEAL---- 504
Query: 437 FALTTLDTATRLGRFAWQEIIEMVKGPEILKNKWVASFILVFFGIALAW----------- 485
F LT LD TR GRF Q+++ P + K + + I+ G W
Sbjct: 505 FILTALDAGTRSGRFMLQDLLGNFI-PFLKKTDSLVAGIIGTAGCVGLWGYLLYQGVVDP 563
Query: 486 KGKWLVIWPAFSGMNQMLASIAMMTASLWVAKIQRPSGFWKWAVLIPALFLWVTVTSAL 544
G +WP F NQMLA++A++ ++ + K++R + W ++PA++L + T AL
Sbjct: 564 LGGVKSLWPLFGISNQMLAAVALVLGTVVLIKMKRTQ--YIWVTVVPAVWLLICTTWAL 620
>sp|P95095|CSTA_MYCTU CARBON STARVATION PROTEIN A HOMOLOG >gi|7444675|pir||H70649 carbon
starvation protein A homolog MTCY22D7.18c [similarity] -
Mycobacterium tuberculosis (strain H37RV)
>gi|1781150|emb|CAB06259.1| (Z83866) cstA [Mycobacterium
tuberculosis]
Length = 758
Score = 233 bits (589), Expect = 3e-60
Identities = 181/602 (30%), Positives = 284/602 (47%), Gaps = 69/602 (11%)
Query: 1 MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
+N+ +++AA Y+ + Y + ++ KVVR + TPA L DG DYVP V++GH
Sbjct: 67 VNAVWIVVAAGCTYIIGFRFYARLIEMKVVRPRDDHATPAEILDDGTDYVPTDRRVVFGH 126
Query: 61 HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
HFA+IAGAGP+VGP +A G+LPS IW+ G V G V DYL L SVR G+S+ +
Sbjct: 127 HFAAIAGAGPLVGPVLATQMGYLPSSIWIVVGAVLAGCVQDYLVLWISVRRRGRSLGQMV 186
Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLG-WLL 179
+ +A + + + +VIA A V+ K+P + + + IA+ +G +L
Sbjct: 187 RDELGATAGVAALVGIPVIITIVIAVLALVVVRALAKSPWGVFSIAMTIPIAIFMGCYLR 246
Query: 180 YKVQINFKVGTIIGIILLIIAIYIGFKFPLVASAKAWYI--------FLGAYVIVASSLP 231
+ ++IGI LL++A+ G + AW+ L +Y AS LP
Sbjct: 247 FLRPGRVSEVSLIGIGLLLLAVVSGDWVAHTSWGAAWFSLSPVTLCWLLISYGFAASVLP 306
Query: 232 VWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGV-GTFTAPAYTTFSAHVVGGKP---S 287
VW+LL PRDYL+ + + +G +A IG APA + F+ G P
Sbjct: 307 VWLLLAPRDYLSTF-----MKVGTIALLAIGVCAAHPIIEAPAVSKFAGS--GNGPVFAG 359
Query: 288 PFWPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIA 347
+P + + IACGALSGFH+L+ SGT+ K L+ E ++GYGGM TE F++ I + + A
Sbjct: 360 SLFPFLFITIACGALSGFHALICSGTTPKMLEKEGQMRVIGYGGMMTESFVAVIALLTAA 419
Query: 348 VYGLQIF--------HNAGIGITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGT 399
+ ++ H TA + + +T + + + + E T
Sbjct: 420 ILDQHLYFTLNAPSLHTHDSAATAAKYVNGLG--LTGSPVTPDHISQAAASVGEQ----T 473
Query: 400 VIGKVG---IFASSYAHGLHDAFGIDIHLGTL---FASLWVSAFALTTLDTATRLGRFAW 453
++ + G A A LH G + L FA ++ + F LTT+D TR RF
Sbjct: 474 IVSRTGGAPTLAFGMAEMLHRVVG-GVGLKAFWYHFAIMFEALFILTTVDAGTRAARFMI 532
Query: 454 QE-------IIEMVKGPEILKNKWVASFILVFFGIALAWKGKWLV-----------IWPA 495
+ ++ ++ P W ++V AW L+ ++P
Sbjct: 533 SDALGNFGGVLRKLQNPSWRPGAWACRLVVV-----AAWGSILLLGVTDPLGGINTLFPL 587
Query: 496 FSGMNQMLASIAMMTASLWVAKIQRPSGFWKWAVLIPALF-LWVTVTSALIWFLIYVGKS 554
F NQ+LA IA+ ++ V K R W W IP L+ L VT+T++ W I+
Sbjct: 588 FGIANQLLAGIALTVITVVVIKKGRLK--WAWIPGIPLLWDLAVTLTAS--WQKIFSADP 643
Query: 555 SI 556
S+
Sbjct: 644 SV 645
>sp|P56190|CSTA_HELPY CARBON STARVATION PROTEIN A HOMOLOG >gi|7444674|pir||H64665 carbon
starvation protein A homolog HP1168 [similarity] -
Helicobacter pylori (strain 26695)
>gi|2314324|gb|AAD08212.1| (AE000622) carbon starvation
protein (cstA) [Helicobacter pylori 26695]
Length = 687
Score = 232 bits (586), Expect = 8e-60
Identities = 184/581 (31%), Positives = 279/581 (47%), Gaps = 54/581 (9%)
Query: 1 MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
+N+ +++A+A IY Y Y + KV++ D +R TPA DG D+VP + +GH
Sbjct: 32 INTLWLVVASACIYSIGYRFYSHFIAYKVLKLDDSRATPACVRNDGKDFVPTDKAITFGH 91
Query: 61 HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
HFA+IAGAGP+VGP +A G+LPS++W+ G+V G VHD++ L +S+R DGKS+ +
Sbjct: 92 HFAAIAGAGPLVGPILAAQMGYLPSILWILIGSVLGGCVHDFVVLFASIRRDGKSLGEMI 151
Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLG-WLL 179
M + M L + ++++IA A V+ +P + + IA+L+G ++
Sbjct: 152 KLEMGQFVGMIASLGILGIMLIIIAILAMVVVKALAHSPWGFFTIAMTIPIAILMGLYMR 211
Query: 180 YKVQINFKVGTIIGIILLIIAIYIG----------FKFPLVASAKAWYIFLGAYVIVASS 229
+ ++IG ILLIIAIY G F AS+ AW I Y VAS
Sbjct: 212 FFRPHKILEVSVIGFILLIIAIYAGKYVSLDPKLASIFTFEASSLAWMIM--GYGFVASI 269
Query: 230 LPVWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVG-TFTAPAYTTF---SAHVVGGK 285
LPVW LL PRDYL+ + L +G + ++ V P T F S V G
Sbjct: 270 LPVWFLLAPRDYLSTF-----LKIGVIGVLVVAIIFVAPPLQIPKITPFVDGSGPVFAGS 324
Query: 286 PSPFWPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGF--LSTIVI 343
PF + + +ACG +SGFH+L+ SGT+ K L E LVGYG M E L +V
Sbjct: 325 VFPF---LFITVACGTISGFHALISSGTTPKMLAKESDARLVGYGSMVMESVVALMALVC 381
Query: 344 SSIAVYGLQIFHNA---GIG---ITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKN 397
+ I GL N+ IG A + ++ ++A+ I E + +G +++ +
Sbjct: 382 AGILHPGLYFAINSPEVSIGKDIADAASVISSWGFNISAEEI-REMTKNIGESSILSRTG 440
Query: 398 GTVIGKVGIFASSYAHGLHD--AFGIDIHLGTLFASLWVSAFALTTLDTATRLGRFAWQE 455
G +G+ Y H L D H LF +L F LT +D TR RF Q+
Sbjct: 441 GAPTFAIGLAMIVY-HILGDPSVMAFWYHFAILFEAL----FILTAVDAGTRTARFMIQD 495
Query: 456 IIEMVKGPEILKNKWVASFILVFFGIALAW-----------KGKWLVIWPAFSGMNQMLA 504
++ V P + + A +A W KG +WP F NQMLA
Sbjct: 496 LLGNVYKPLGDLSSYKAGIFATLLCVA-GWGYFLYQGTIDPKGGIYTLWPLFGVSNQMLA 554
Query: 505 SIAMMTASLWVAKIQRPSGFWKWAVLIPALFLWVTVTSALI 545
+A++ ++ + K+ R G + L L L +T S ++
Sbjct: 555 GMALLLVTVVLFKMGRFKGA-MISALPAVLILSITFYSGIL 594
>sp|Q9ZK47|CSTA_HELPJ CARBON STARVATION PROTEIN A HOMOLOG >gi|7444673|pir||C71849 carbon
starvation protein A homolog jhp1095 [similarity] -
Helicobacter pylori (strain J99)
>gi|4155693|gb|AAD06677.1| (AE001537) putative
[Helicobacter pylori J99]
Length = 687
Score = 232 bits (585), Expect = 1e-59
Identities = 181/582 (31%), Positives = 284/582 (48%), Gaps = 56/582 (9%)
Query: 1 MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
+N+ +++A+A IY Y Y + +V++ D +R TPA DG D+VP + +GH
Sbjct: 32 INTLWLVVASACIYSIGYRFYSHFIAYRVLKLDDSRATPACVRNDGKDFVPTDKAITFGH 91
Query: 61 HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
HFA+IAGAGP+VGP +A G+LPS++W+ G+V G VHD++ L +S+R DGKS+ +
Sbjct: 92 HFAAIAGAGPLVGPILAAQMGYLPSILWILIGSVLGGCVHDFVVLFASIRRDGKSLGEMI 151
Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLG-WLL 179
M K M L + ++++IA A V+ +P + + IA+L+G ++
Sbjct: 152 KLEMGKFVGMIASLGILGIMLIIIAILAMVVVKALAHSPWGFFTIAMTIPIAILMGLYMR 211
Query: 180 YKVQINFKVGTIIGIILLIIAIYIG----------FKFPLVASAKAWYIFLGAYVIVASS 229
+ ++IG ILLIIAIY G F A + AW I Y VAS
Sbjct: 212 FFRPHKILEVSVIGFILLIIAIYAGKYVSLDPKLASIFTFEAGSLAWMIM--GYGFVASI 269
Query: 230 LPVWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVG-TFTAPAYTTF---SAHVVGGK 285
LPVW LL PRDYL+ + L +G + ++ V P T F S V G
Sbjct: 270 LPVWFLLAPRDYLSTF-----LKIGVIGVLVVAIVFVAPPLQIPKITPFVDGSGPVFAGS 324
Query: 286 PSPFWPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGF--LSTIVI 343
PF + + +ACG +SGFH+L+ SGT+ K L E LVGYG M E L +V
Sbjct: 325 VFPF---LFITVACGTISGFHALISSGTTPKMLAKESDARLVGYGSMVMESVVALMALVC 381
Query: 344 SSIAVYGLQIFHNAGIGITAETWAQAYAPLVA-AKSITTETLQKLGVAALENFKNGTVIG 402
+ I GL N+ + A A + + + SI+ E ++++ +N +++
Sbjct: 382 AGILHPGLYFAINSPEVSIGKDIADAASVISSWGFSISAEEIREM----TKNIGESSILS 437
Query: 403 KVG---IFASSYAHGLHDAFGIDIHLGTL--FASLWVSAFALTTLDTATRLGRFAWQEII 457
+ G FA A ++ G + FA L+ + F LT +D TR RF Q+++
Sbjct: 438 RTGGAPTFAIGLAMIVYHILGDPSVMAFWYHFAILFEALFILTAVDAGTRTARFMIQDLL 497
Query: 458 EMVKGPEILKNKWVASFILVFFGIALAW-----------KGKWLVIWPAFSGMNQMLASI 506
+ P + + A +A W KG +WP F NQMLA +
Sbjct: 498 GNIYKPLGDLSSYKAGIFATLLCVA-GWGYFLYQGTIDPKGGIYTLWPLFGVSNQMLAGM 556
Query: 507 AMMTASLWVAKIQRPSGFWKWAVL--IPA-LFLWVTVTSALI 545
A++ ++ + K+ G +K A++ +PA L L +T S ++
Sbjct: 557 ALLLVTVVLFKM----GRFKGAIISALPAVLILAITFYSGIL 594
>emb|CAA86050.1| (Z37980) ORF12 [Escherichia coli]
Length = 582
Score = 207 bits (522), Expect = 2e-52
Identities = 161/500 (32%), Positives = 243/500 (48%), Gaps = 67/500 (13%)
Query: 6 VILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGHHFASI 65
+++A+ +Y+ Y Y + KV++ DP R TPA DG++YVP + VL+GHHFA+I
Sbjct: 44 IVVASVSVYLVAYRYYSLYIAQKVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHFAAI 103
Query: 66 AGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIAGKLMS 125
AGAGP+VGP +A G LP +W+ G V GAV D++ L S R +G S+ + + M
Sbjct: 104 AGAGPLVGPVLAAQMGILPGTLWLLAGVVLAGAVQDFMVLFISSRRNGPSLGEMIKEEMG 163
Query: 126 KRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLYKVQIN 185
+ +I+++A A ++ ++P + IA+ +G + ++
Sbjct: 164 PLPGTIALFGCFLIMIIILAVLALIVVKALAESPWGVFTVCSTVPIALFMGIYMRFIRPG 223
Query: 186 FKVG--TIIGIILLIIAIYIG-------FKFPLVASAKAWYIF-LGAYVIVASSLPVWVL 235
+VG ++IGI+LL+ +IY G + P + F L Y V++ LPVW++
Sbjct: 224 -RVGEVSVIGIVLLVASIYFGGVIAHDPYWGPALTFKDTTITFALIGYAFVSALLPVWLI 282
Query: 236 LQPRDYLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPSPFW----- 290
L PRDYL A L G+++ GLA I+ PA T + + G P W
Sbjct: 283 LAPRDYL-ATFLKIGVIV-GLALGIVVLN--PELKMPAMTQY----IDG-TGPLWKGALF 333
Query: 291 PTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLS--TIVISSIAV 348
P + + IACGA+SGFH+L+ SGT+ K L NE +GYG M E F++ +V +SI
Sbjct: 334 PFLFITIACGAVSGFHALISSGTTPKLLANETDARFIGYGAMLMESFVAIMALVAASIIE 393
Query: 349 YGLQIFHN---AGIGITAETWAQ---AYAPLVAA--KSITT------------------E 382
GL N AG+GIT + AP++ A K +T +
Sbjct: 394 PGLYFAMNTPPAGLGITMPNLHEMGGENAPIIMAQLKDVTAHAQTVTSWGFVISPEQILQ 453
Query: 383 TLQKLGVAALENFKNGTVIGKVGIFASSYAHGLHDA-----FGIDIHLGTLFASLWVSAF 437
T + +G ++ N G VGI AH H G H G LF +L F
Sbjct: 454 TAKDIGEPSVLNRAGGAPTLAVGI-----AHVFHKVLPVADMGFWYHFGILFEAL----F 504
Query: 438 ALTTLDTATRLGRFAWQEII 457
LT LD TR RF Q+++
Sbjct: 505 ILTALDAGTRSARFMLQDLL 524
>gb|AAD00522.1| (U81796) carbon starvation protein [Helicobacter pylori]
Length = 383
Score = 205 bits (515), Expect = 2e-51
Identities = 128/358 (35%), Positives = 190/358 (52%), Gaps = 25/358 (6%)
Query: 1 MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
+N+ +++A+A IY Y Y + +V++ D NR TPA DG D+VP + +GH
Sbjct: 32 INTLWLVVASACIYSIGYRFYSHFIAYRVLKLDDNRATPACVRNDGKDFVPTDKAITFGH 91
Query: 61 HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
HFA+IAGAGP+VGP +A G+LPS++W+ G+V G VHD++ L +S+R DGKS+ +
Sbjct: 92 HFAAIAGAGPLVGPILAAQMGYLPSILWILIGSVLGGCVHDFVVLFASIRRDGKSLGEMI 151
Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLG-WLL 179
M + M L + ++++IA A V+ +P + + IA+L+G ++
Sbjct: 152 KLEMGQFVGMIASLGILGIMLIIIAILAMVVVKALAHSPWGFFTIAMTIPIAILMGLYMR 211
Query: 180 YKVQINFKVGTIIGIILLIIAIYIG----------FKFPLVASAKAWYIFLGAYVIVASS 229
+ ++IG ILLIIAIY G F AS+ AW I Y VAS
Sbjct: 212 FFRPHKILEVSVIGFILLIIAIYAGKYISLDPKLASIFTFDASSLAWMIM--GYGFVASI 269
Query: 230 LPVWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVG-TFTAPAYTTF---SAHVVGGK 285
LPVW LL PRDYL+ + L +G + ++ V P T F S V G
Sbjct: 270 LPVWFLLAPRDYLSTF-----LKIGVIGVLVVAIVFVAPPLQIPKITPFVDGSGPVFAGS 324
Query: 286 PSPFWPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVI 343
PF + + +ACG +SGFH+L+ SGT+ K L E LVGYG M E ++ + +
Sbjct: 325 VFPF---LFITVACGTISGFHALISSGTTPKMLAKESDARLVGYGSMVMESVVALMAL 379
>dbj|BAA35227.1| (D90701) Hypothetical protein 200 (entA 3' region) [Escherichia
coli]
Length = 584
Score = 175 bits (439), Expect = 1e-42
Identities = 149/499 (29%), Positives = 240/499 (47%), Gaps = 62/499 (12%)
Query: 87 IWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIAGKLMSKRTSMAFELYVWFALILVIAA 146
IW+ G V GAV D++ L S R DG+S+ + + M + + + +++++A
Sbjct: 1 IWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIALVACFMIMVIILAV 60
Query: 147 FAAVIAGIFVKTPGAATASILFLLIAVLLG-WLLYKVQINFKVGTIIGIILLIIAIYIGF 205
A ++ +P + +A+ +G +L Y ++IG++ LI AI G
Sbjct: 61 LAMIVVKALTHSPWGTYTVAFTIPLALFMGIYLRYLRPGRIGEVSVIGLVFLIFAIISG- 119
Query: 206 KFPLVASAKAW---YIFLGA--------YVIVASSLPVWVLLQPRDYLNAYILWFGLVLG 254
VA + W + F G Y VA+ LPVW+LL PRDYL+ + L G ++G
Sbjct: 120 --GWVAESPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLLAPRDYLSTF-LKIGTIVG 176
Query: 255 GLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPSPFW-----PTIPLVIACGALSGFHSLV 309
LA I+ + T T PA T F V G P W P + + IACGA+SGFH+L+
Sbjct: 177 -LAVGILIMRP--TLTMPALTKF----VDGT-GPVWTGNLFPFLFITIACGAVSGFHALI 228
Query: 310 GSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIAVY--GLQIFHNAGIGI-----T 362
SGT+ K L NE +GYGGM E F++ + + S + G+ N+ + + T
Sbjct: 229 SSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVSACIIDPGVYFAMNSPMAVLAPAGT 288
Query: 363 AETWAQAYAPLVAA--KSITTETLQKLGVAALENFKNGTVIGKVG---IFASSYAHGLHD 417
A+ A A A +V++ SIT +TL ++ E ++I + G A A+ LH
Sbjct: 289 ADVVASA-AQVVSSWGFSITPDTLNQIASEVGEQ----SIISRAGGAPTLAVGMAYILHG 343
Query: 418 AFG--IDIHLGTLFASLWVSAFALTTLDTATRLGRFAWQEIIEMVKGPEILKNKWVASFI 475
A G +D+ FA L+ + F LT +D TR RF Q+++ +V P + + + + +
Sbjct: 344 ALGGMMDVAFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVV-SPGLKRTDSLPANL 402
Query: 476 LVFFGIALAW-----------KGKWLVIWPAFSGMNQMLASIAMMTASLWVAKIQRPSGF 524
L LAW G +WP F NQMLA +A+M ++ + K++R
Sbjct: 403 LATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLCAVVLFKMKRQR-- 460
Query: 525 WKWAVLIPALFLWVTVTSA 543
+ W L+P +L + +A
Sbjct: 461 YAWVALVPTAWLLICTLTA 479
>pir||A82294 probable carbon starvation protein A VC0687 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655126|gb|AAF93852.1| (AE004154) carbon starvation
protein A, putative [Vibrio cholerae]
Length = 494
Score = 138 bits (344), Expect = 2e-31
Identities = 138/550 (25%), Positives = 215/550 (39%), Gaps = 126/550 (22%)
Query: 8 LAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGHHFASIAG 67
L VG YF YG ++ KV + R TPAH DGVDYVP +Y +IAG
Sbjct: 5 LTCVAALVGGYFIYGAFVE-KVFGINEKRQTPAHTKTDGVDYVPMSTPKVYLVQLLNIAG 63
Query: 68 AGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIAGKLMSKR 127
GPI GP + +G +++W+ G +F GAVHDY + M S+R G S+ I G+ +
Sbjct: 64 VGPIFGPIMGALYG-PAAMLWIVVGCIFAGAVHDYFSGMLSIRNGGASVPSITGRYLGNG 122
Query: 128 TSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLYKVQINFK 187
++ L+LV F + AG+ L Q +F
Sbjct: 123 AKHFMNIFAIVLLLLVGVVFVSAPAGMITN---------------------LINQQTDFT 161
Query: 188 VGTIIGIILLIIAIYIGFKFPLVASAKAWYIFLGAYVIVASSLPVWVLLQPRDYLNAYIL 247
V ++++ AY I+A+ +PV + I
Sbjct: 162 VSMTTMVVIIF-----------------------AYYILATIVPV----------DKIIG 188
Query: 248 WFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGG------------KPSPFWPTIPL 295
F + G L F+ VG TA A+++ V+GG P WP + +
Sbjct: 189 RFYPLFGALLIFM----SVGLMTAIAFSS-EHQVLGGFEISDMVKNLNPNDMPLWPALFI 243
Query: 296 VIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIAVYGLQIFH 355
IACGA+SGFH+ S ++ ++NE +G V YG M EG ++ I
Sbjct: 244 TIACGAISGFHA-TQSPLMARCMENEKNGRFVFYGAMIGEGIIALI-------------- 288
Query: 356 NAGIGITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGTVIGKVGIFASSYAHGL 415
W + +E ++ G N G G +G+F
Sbjct: 289 ----------WCTVALSFFGSLEALSEAVKNGGPG---NVVYGASFGLLGVF-------- 327
Query: 416 HDAFGIDIHLGTLFASLWVSAFALTTLDTATRLGRFAWQEIIEMVKGPEILKNKWVASFI 475
G + A L V +T+ DTA R R E M + + L+N+ + +
Sbjct: 328 ----------GGVIAFLGVVILPITSGDTAFRSSRLILAEYFNMEQ--KTLRNRLLMAVP 375
Query: 476 LVFFGIALAWKGKWLVIWPAFSGMNQMLASIAMMTASLWVAKIQRPSGFWKWAVLIPALF 535
L G L + + +IW F NQ A + + TA+ ++ + + W +PALF
Sbjct: 376 LFVIGAVLT-QVDFGIIWRYFGFANQATAVMMLWTATAYLMRHNK----LHWICTVPALF 430
Query: 536 LWVTVTSALI 545
+ S ++
Sbjct: 431 MTTVCISFIL 440
>sp|O86233|YB2X_HAEIN HYPOTHETICAL PROTEIN HI1126.1 >gi|3212213|gb|AAC22781.1| (U32792)
H. influenzae predicted coding region HI1126.1
[Haemophilus influenzae Rd]
Length = 371
Score = 125 bits (311), Expect = 1e-27
Identities = 100/348 (28%), Positives = 168/348 (47%), Gaps = 45/348 (12%)
Query: 12 IIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGHHFASIAGAGPI 71
++ +G YF YGK ++ K+ +P R TPA+++ DGVDY+P ++ +IAG GPI
Sbjct: 15 VLIIG-YFIYGKIIE-KIFVINPKRQTPAYQVNDGVDYMPMSKTKIWLIQLLNIAGTGPI 72
Query: 72 VGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIAGKLMSKRTSMA 131
GP + +G + +++W+ G +F GAVHDY M S+R+ G ++ ++AGK + + +
Sbjct: 73 FGPILGALYGPV-AMLWIVIGCIFAGAVHDYFCGMLSIRHGGATMPYLAGKFLGRPVKVF 131
Query: 132 FELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLY----KVQINFK 187
AL+L++ ++ +FV +P +I + V G L+ V + +
Sbjct: 132 INT---LALVLLL-----LVGVVFVASPAQLMGTITMDVFGVSQGALVLGDAEAVHHSVE 183
Query: 188 VGTIIGIILLIIAIYIGFKFPLVASAKAWYIFLGAYVIVASSLPVWVLLQPRDYLNAYIL 247
G I ++ K +VA W + AY I+A+ LPV ++ L +L
Sbjct: 184 AGG--------IKVWGMDKATVVA---VWTAIIFAYYILATLLPVDKIIGRIYPLFGALL 232
Query: 248 WF---GLVLGGLA-----------FFIIGFKGVGTFTAPAYTTFSAHVVGGKPSPFWPTI 293
F G+V G + F I G G + F+ + P WP +
Sbjct: 233 LFMSVGMVYGLVVSHFSATDPIEFFRTINADGEGL----TWAKFTQNFQVKGDVPIWPLL 288
Query: 294 PLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTI 341
L I+CGALSGFH+ + ++ +NE G + YG M TEG ++ +
Sbjct: 289 FLTISCGALSGFHA-TQTPLMARCTENESEGRFIFYGAMITEGVIALV 335
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.141 0.454
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 227663908
Number of Sequences: 2977
Number of extensions: 9819790
Number of successful extensions: 38348
Number of sequences better than 1.0e-10: 21
Number of HSP's better than 0.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 38233
Number of HSP's gapped (non-prelim): 27
length of query: 592
length of database: 189,106,746
effective HSP length: 51
effective length of query: 541
effective length of database: 158,583,909
effective search space: 85793894769
effective search space used: 85793894769
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 168 (69.9 bits)