BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1554 (cstA) DE:CARBON STARVATION PROTEIN A.
         (592 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75032 carbon starvation protein A homolog PAB1554 [similar...  1202  0.0
pir||E72523 carbon starvation protein A homolog APE2162 [similar...   482  e-135
sp|O67304|CSTA_AQUAE CARBON STARVATION PROTEIN A HOMOLOG >gi|744...   330  3e-89
dbj|BAB05512.1| (AP001513) carbon starvation-induced protein [Ba...   284  2e-75
pir||E81865 carbon starvation protein A homolog NMA1698 [similar...   271  1e-71
pir||C81078 carbon starvation protein A homolog NMB1493 [similar...   267  2e-70
sp|P94532|CSTA_BACSU CARBON STARVATION PROTEIN A HOMOLOG >gi|744...   263  6e-69
sp|P15078|CSTA_ECOLI CARBON STARVATION PROTEIN A >gi|7429186|pir...   259  6e-68
pir||D81365 carbon starvation protein A homolog Cj0917c [similar...   255  1e-66
pir||H83070 conserved hypothetical protein PA4606 [imported] - P...   252  6e-66
gb|AAF69024.1| (AF182514) unknown [Pseudomonas putida]                245  1e-63
pir||S14411 carbon starvation protein - Escherichia coli >gi|410...   235  1e-60
sp|P39396|YJIY_ECOLI HYPOTHETICAL 77.9 KD PROTEIN IN MRR-TSR INT...   234  3e-60
sp|P95095|CSTA_MYCTU CARBON STARVATION PROTEIN A HOMOLOG >gi|744...   233  3e-60
sp|P56190|CSTA_HELPY CARBON STARVATION PROTEIN A HOMOLOG >gi|744...   232  8e-60
sp|Q9ZK47|CSTA_HELPJ CARBON STARVATION PROTEIN A HOMOLOG >gi|744...   232  1e-59
emb|CAA86050.1| (Z37980) ORF12 [Escherichia coli]                     207  2e-52
gb|AAD00522.1| (U81796) carbon starvation protein [Helicobacter ...   205  2e-51
dbj|BAA35227.1| (D90701) Hypothetical protein 200 (entA 3' regio...   175  1e-42
pir||A82294 probable carbon starvation protein A VC0687 [importe...   138  2e-31
sp|O86233|YB2X_HAEIN HYPOTHETICAL PROTEIN HI1126.1 >gi|3212213|g...   125  1e-27

>pir||E75032 carbon starvation protein A homolog PAB1554 [similarity] -
           Pyrococcus abyssi (strain Orsay)
           >gi|5458667|emb|CAB50154.1| (AJ248287) CARBON STARVATION
           PROTEIN A. [Pyrococcus abyssi]
           Length = 592
           
 Score = 1202 bits (3077), Expect = 0.0
 Identities = 592/592 (100%), Positives = 592/592 (100%)

Query: 1   MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
           MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH
Sbjct: 1   MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60

Query: 61  HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
           HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA
Sbjct: 61  HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120

Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLY 180
           GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLY
Sbjct: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLY 180

Query: 181 KVQINFKVGTIIGIILLIIAIYIGFKFPLVASAKAWYIFLGAYVIVASSLPVWVLLQPRD 240
           KVQINFKVGTIIGIILLIIAIYIGFKFPLVASAKAWYIFLGAYVIVASSLPVWVLLQPRD
Sbjct: 181 KVQINFKVGTIIGIILLIIAIYIGFKFPLVASAKAWYIFLGAYVIVASSLPVWVLLQPRD 240

Query: 241 YLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPSPFWPTIPLVIACG 300
           YLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPSPFWPTIPLVIACG
Sbjct: 241 YLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPSPFWPTIPLVIACG 300

Query: 301 ALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIAVYGLQIFHNAGIG 360
           ALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIAVYGLQIFHNAGIG
Sbjct: 301 ALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIAVYGLQIFHNAGIG 360

Query: 361 ITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGTVIGKVGIFASSYAHGLHDAFG 420
           ITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGTVIGKVGIFASSYAHGLHDAFG
Sbjct: 361 ITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGTVIGKVGIFASSYAHGLHDAFG 420

Query: 421 IDIHLGTLFASLWVSAFALTTLDTATRLGRFAWQEIIEMVKGPEILKNKWVASFILVFFG 480
           IDIHLGTLFASLWVSAFALTTLDTATRLGRFAWQEIIEMVKGPEILKNKWVASFILVFFG
Sbjct: 421 IDIHLGTLFASLWVSAFALTTLDTATRLGRFAWQEIIEMVKGPEILKNKWVASFILVFFG 480

Query: 481 IALAWKGKWLVIWPAFSGMNQMLASIAMMTASLWVAKIQRPSGFWKWAVLIPALFLWVTV 540
           IALAWKGKWLVIWPAFSGMNQMLASIAMMTASLWVAKIQRPSGFWKWAVLIPALFLWVTV
Sbjct: 481 IALAWKGKWLVIWPAFSGMNQMLASIAMMTASLWVAKIQRPSGFWKWAVLIPALFLWVTV 540

Query: 541 TSALIWFLIYVGKSSIWVSLITIVGLVLNFLLVIDWYNAWKKPAEEYQAAAA 592
           TSALIWFLIYVGKSSIWVSLITIVGLVLNFLLVIDWYNAWKKPAEEYQAAAA
Sbjct: 541 TSALIWFLIYVGKSSIWVSLITIVGLVLNFLLVIDWYNAWKKPAEEYQAAAA 592


>pir||E72523 carbon starvation protein A homolog APE2162 [similarity] -
           Aeropyrum pernix (strain K1) >gi|5105861|dbj|BAA81173.1|
           (AP000063) 604aa long hypothetical carbon starvation
           protein A [Aeropyrum pernix]
           Length = 604
           
 Score =  482 bits (1228), Expect = e-135
 Identities = 282/641 (43%), Positives = 378/641 (57%), Gaps = 86/641 (13%)

Query: 1   MNSTVVILAAAI--IYVGLYFTYGKG-LQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVL 57
           M+  +++L A I  IY   Y  YG+  LQ KVVRA P R TPA   +DGVDYVPAH  VL
Sbjct: 1   MSMPILLLVAVILAIYAVAYLFYGRNILQEKVVRASPERETPAIAKFDGVDYVPAHRFVL 60

Query: 58  YGHHFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQ 117
           +GHHFASIAGAGPIVGPA+AMA+GWL  L+WV FGNVF+GAVHDYL+LM+SVRY G SI 
Sbjct: 61  FGHHFASIAGAGPIVGPAIAMAYGWLLPLVWVLFGNVFMGAVHDYLSLMASVRYGGISIV 120

Query: 118 WIAGKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGW 177
            +   LM ++    F +YV F LILV AAFA++ A +F + P  AT SILF+ +A+LLG 
Sbjct: 121 SVGENLMGRKARYLFLIYVLFTLILVYAAFASIAASLFARDPRVATLSILFMPLALLLGI 180

Query: 178 LLYKVQINFKVGTIIGIILLIIAIYIGFKFPLV---------------ASAKAWYIFLGA 222
           ++Y++ +     T+I ++L+I A    +   +V                +   W I LG 
Sbjct: 181 MMYRMGLGMGPSTVITVVLVIAAFVYSYNHGIVIGTFDPSLPPGEGGWVAYHRWVIILGL 240

Query: 223 YVIVASSLPVWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVV 282
           Y ++A+SLPVW LLQPRDYLNAYILW GL L  +A  ++G +   +   PAYT+F  +++
Sbjct: 241 YALLAASLPVWYLLQPRDYLNAYILWTGLGLAAIAAILLGTQ---SLKGPAYTSFQPNII 297

Query: 283 GGKPSPFWPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIV 342
            G+P+PFWP IPL+IACG+LSGFHSLV SGT+SKQL +EL  L VGYG M  EG LS + 
Sbjct: 298 AGQPTPFWPAIPLIIACGSLSGFHSLVASGTTSKQLASELDALFVGYGAMLLEGALSGLA 357

Query: 343 ISSIAVYGLQIFHNAGIGITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGTVIG 402
           +    +  +    NA                        E +QK     +EN  N   + 
Sbjct: 358 V----IIPISFAWNA-----------------------PELIQK---GVIEN--NMLDLA 385

Query: 403 KVGIFASSYAHGL---HDAFGIDIHLG----TLFASLWVSAFALTTLDTATRLGRFAWQE 455
            V  +A  Y + L    + FG+    G    TLFASL +S + LTTLDT TRL RFAWQE
Sbjct: 386 AVPRYAVGYGYTLAKTFEMFGVGFDTGYSFFTLFASLMLSMYVLTTLDTGTRLARFAWQE 445

Query: 456 IIEMVKGPE-----ILKNKWVASFILVFFGIALA---------WKGKWLVIWPAFSGMNQ 501
           + + +   +     I+ NKWV+S  +V  G ALA         +K  + V+WPAF+G NQ
Sbjct: 446 LFDWLANVDKNLYSIVTNKWVSSLAVVIIGSALAYPVLEIGAGYKAAYNVVWPAFAGANQ 505

Query: 502 MLASIAMMTASLWVAKIQRPSGFWKWAVLIPALFLWVTVTSALIWFLIYV---------- 551
           MLA+IA++T++LWV  +    G     +L+P+LFLWVTVT+ L W+L+ +          
Sbjct: 506 MLAAIALLTSALWVYGVLNVRGGTGLLILLPSLFLWVTVTAGLTWWLMVILPVLPAIQQF 565

Query: 552 GKSSIWVSLITIVGLVLNFLLVIDWYNAWKKPAEEYQAAAA 592
           G  S  + L T++  +L F L I  +N   K A   Q A A
Sbjct: 566 GAGS--MILFTLLLSLLLFALFIINFNKLSKQAGASQQAQA 604


>sp|O67304|CSTA_AQUAE CARBON STARVATION PROTEIN A HOMOLOG >gi|7444679|pir||E70409 carbon
           starvation protein cstA [similarity] - Aquifex aeolicus
           >gi|2983694|gb|AAC07258.1| (AE000731) carbon starvation
           protein A [Aquifex aeolicus]
           Length = 555
           
 Score =  330 bits (837), Expect = 3e-89
 Identities = 216/598 (36%), Positives = 320/598 (53%), Gaps = 63/598 (10%)

Query: 1   MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
           M++  +I  A ++Y   YF Y K L  K+ + D +RPTPA  + DGVDYVP +  +L GH
Sbjct: 1   MHALPLIGIAFLLYAFGYFVYSKYLAEKIFQLDDSRPTPAKEINDGVDYVPTNKWILLGH 60

Query: 61  HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
           HF SI GAGPIVGPA+A+ WGWLP+ +WV  G VFIG VHD+ AL++S+R+ GKSI  I 
Sbjct: 61  HFTSITGAGPIVGPAIAVIWGWLPAFLWVVLGAVFIGGVHDFTALVTSIRHKGKSIGTIL 120

Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLY 180
           G+   ++  + F L +    ILV A FA VI+ +FVK P +   + L + +AV+ G+ +Y
Sbjct: 121 GEYAGEKARVLFLLLLLALAILVNAVFAYVISLLFVKYPSSVLPAWLVIPLAVIFGFSVY 180

Query: 181 KVQINFKVGTIIGIILLIIAIYIGFKFPL----------VASAKAWYIFLGAYVIVASSL 230
           ++++NF + T+I + +L   IY+G   P+          ++    W I L  Y   ASSL
Sbjct: 181 RLRVNFLILTVIFLSILYFGIYLGSVSPIDVKPLAESLGLSPIMLWIIVLFTYAFFASSL 240

Query: 231 PVWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPSPFW 290
           PVWVLLQPRD+LN   L   L+L  +   I   K      APA          G P P +
Sbjct: 241 PVWVLLQPRDFLNGLQLLILLILLYIGAVIANPK----IVAPAVNLNPE----GAP-PIF 291

Query: 291 PTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIAVYG 350
           P + + IACGALSGFH+LV SGTSSKQL+ E     VGY G   E  L+  VI       
Sbjct: 292 PFLFITIACGALSGFHALVSSGTSSKQLEKESDARAVGYLGFMGESSLALAVI------- 344

Query: 351 LQIFHNAGIGI-TAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGTVIGKVGIFAS 409
             I   AGI + +AE + + Y+   + KS +        VA ++   N            
Sbjct: 345 --IATTAGIAMFSAEKFQELYSSWSSIKSSSL-------VAVVDGGAN------------ 383

Query: 410 SYAHGLHDAFGIDIHLGTLFASLWVSAFALTTLDTATRLGRFAWQEIIEMVKGPEILKNK 469
                L  A GI +  G    +  V  FA TT+DT+ R+ R+   E+ E + G  +L N 
Sbjct: 384 -----LLGAVGIPVDFGKTVIATLVVLFAATTMDTSVRIQRYILGELGE-IYGVRLLTNP 437

Query: 470 WVASFILVFFGIALAWK---GK-WLVIWPAFSGMNQMLASIAMMTASLWVAKIQRPSGFW 525
           WVAS + V   +AL      GK  +V WP F   NQ+LA +A++   L++ ++ RP+   
Sbjct: 438 WVASGVAVLTSMALVLSKEGGKGGMVFWPVFGAANQLLAGLALLIGYLYLKRVNRPT--- 494

Query: 526 KWAVLIPALF-LWVTVTSALIWFLIYVGKSSIWVSLITIVGLVLNFLLVIDWYNAWKK 582
              +LIP +F L++T  +  +     + K  + +  ++ + L+L   ++ + + A ++
Sbjct: 495 -LPILIPMIFVLFITSLAMAMNAWNNLMKGDLLLFSVSFIILLLEMFIIFESFRAVRR 551


>dbj|BAB05512.1| (AP001513) carbon starvation-induced protein [Bacillus halodurans]
           Length = 580
           
 Score =  284 bits (720), Expect = 2e-75
 Identities = 194/604 (32%), Positives = 300/604 (49%), Gaps = 91/604 (15%)

Query: 6   VILAAA--IIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGHHFA 63
           V+LAA   +++   Y  Y K +  ++ R DPN  TPAH+  DG D+VP +  VL+GHHF 
Sbjct: 4   VLLAALGMLVFALGYRYYSKFIAERIYRLDPNFVTPAHQFKDGKDFVPTNKFVLWGHHFT 63

Query: 64  SIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIAGKL 123
           S+AGA PIVGPA+A+ WGWLP+++WV  G VF   VHD+ AL+ SVR  G+S+  +A KL
Sbjct: 64  SVAGAAPIVGPAIAIYWGWLPAILWVTLGTVFAAGVHDFGALVLSVRNKGQSVGTLADKL 123

Query: 124 MSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLYKVQ 183
           + ++  + F   +   +++V A FA VI+ +F+  P A  +  + + +AV +G+ +YK Q
Sbjct: 124 IGRQAKLLFLFIILILVLMVNAVFAWVISNLFISNPSAVLSVFIQIPLAVWIGYHVYKRQ 183

Query: 184 INFKVGTIIGIILLIIAIYIGFKFP-----------------------LVASAKAWYIFL 220
               + +++ + ++ ++  +  + P                       +  S   W I L
Sbjct: 184 GGMLIPSLVALAVMYVSAIVASRVPALQIDLIRYFGGEENIVAFGLDGVAMSFFVWIIVL 243

Query: 221 GAYVIVASSLPVWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAH 280
             YV +AS+LPVW LLQPRDY+N++ L  GL++  L       K     TAPA       
Sbjct: 244 MIYVYIASTLPVWKLLQPRDYINSHQLVVGLLILYLGLLFSNPK----VTAPA------- 292

Query: 281 VVGGKPSPFW-PTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLS 339
            V G P   W P + + IACGA+SGFH LV SGT+SKQL+ E     VGY G   EG L+
Sbjct: 293 -VNGSPDTSWFPLLFITIACGAISGFHGLVSSGTTSKQLNKETDARFVGYLGAIGEGLLA 351

Query: 340 TIVISSIAVYGLQIFHNAGIGITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGT 399
            IVI ++A +            + + +++ Y+   AA               L NF    
Sbjct: 352 LIVIVAVATFFA----------SPQAFSEVYSSFGAANQ-----------GGLGNFVQA- 389

Query: 400 VIGKVGIFASSYAHGLHDAFGIDIHLGTLFASLWVSAFALTTLDTATRLGRFAWQEIIEM 459
                   A   A GL     I   +     ++ + +FA TTLDT+ RL R+   E+ + 
Sbjct: 390 --------AGQLATGLL----IPQDMAATIVAVIIVSFAATTLDTSVRLMRYIIAELGQE 437

Query: 460 VKGPEILKNKWVASFILVFFGIALAW---------KGKWLVIWPAFSGMNQMLASIAMMT 510
            K P + K   VA+ I V    AL            G +L +WP F   NQ+LA I ++ 
Sbjct: 438 YKVPALSKTH-VATSIAVVSSAALVLLPEGPNGFGSGGYL-LWPLFGTSNQLLAGITLLL 495

Query: 511 ASLWVAKIQRPSGFWKWAVLIPALFLWVTVTSALIWFLIY----VGKSSIWVSLITIVGL 566
            ++W+ +     G      LIP +F+      A++  +++     G +   + L T+  +
Sbjct: 496 ITIWLKR----QGRNYLPTLIPMVFVLFMTLYAMLQQVLFQWSPFGGTGTNILLFTLGSI 551

Query: 567 VLNF 570
           +L F
Sbjct: 552 ILVF 555


>pir||E81865 carbon starvation protein A homolog NMA1698 [similarity] -
           Neisseria meningitidis (group A strain Z2491)
           >gi|7380339|emb|CAB84926.1| (AL162756) putative integral
           membrane protein (CstA-like) [Neisseria meningitidis
           Z2491]
           Length = 693
           
 Score =  271 bits (686), Expect = 1e-71
 Identities = 206/602 (34%), Positives = 304/602 (50%), Gaps = 77/602 (12%)

Query: 6   VILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGHHFASI 65
           ++ AA  +Y   Y  Y   + N+V+R DPNR TPA R  DG+DYVP H  VL+GHHFA+I
Sbjct: 37  MVTAAISVYCIAYRFYSLYIANRVMRLDPNRLTPAERHNDGLDYVPTHKGVLFGHHFAAI 96

Query: 66  AGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIAGKLMS 125
           AGAGP+VGP +A   G+LP  +W+ FG VF GAV D + L  S+R DGKS+  I  + + 
Sbjct: 97  AGAGPLVGPVLAAQMGYLPGTLWIIFGVVFAGAVQDMIVLFVSMRRDGKSLGDIVKQELG 156

Query: 126 KRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLYKVQIN 185
               +   + +   +++++A  A ++    V +P         + IA+ +G  +Y   I 
Sbjct: 157 TVPGVIASIGILMIMVIIMAVLALIVVKALVHSPWGTFTIAATMPIALFMG--IYTRYIR 214

Query: 186 -FKVG--TIIGIILLIIAIY---------IGFKFPLVASAKAWYIFLGAYVIVASSLPVW 233
             K+G  +I+G ILL++A+          IG  F L      W I +  Y  VAS LPVW
Sbjct: 215 PGKIGEISIVGFILLMLAVIYGEDVAKSSIGHWFDLDGIQLTWAIMI--YGFVASVLPVW 272

Query: 234 VLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVG-TFTAPAYTTF---SAHVVGGKPSPF 289
           +LL PRDYL+ +     L +G +A   +G   V  T   PA T F   S  V  G   PF
Sbjct: 273 LLLTPRDYLSTF-----LKIGTIAALALGIVIVNPTLQMPAVTHFIDGSGPVFSGALFPF 327

Query: 290 WPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIA-- 347
              + + IACGA+SGFH+L+ SGT+ K L+NE H  ++GYGGM  E F++ + +++ A  
Sbjct: 328 ---LFITIACGAVSGFHALISSGTTPKMLENETHVRMIGYGGMLMESFVAIMALAAAASL 384

Query: 348 ---VYGLQIFHNAGIGITAETWAQAYAPLVAAKSITTETLQKLGVAAL----ENFKNGTV 400
              VY       A IG  A T         AA+ ITT+    +  A L    +     T+
Sbjct: 385 DPGVYFAMNSPAALIGTDANT---------AAEVITTKLQFPVDAATLLHTAKEVGENTI 435

Query: 401 IGKVG---IFASSYAHGLHDAFGIDIHLGTL--FASLWVSAFALTTLDTATRLGRFAWQE 455
           + + G     A   AH +      +  +     FA L+ + F LT +D  TR+ RF  Q+
Sbjct: 436 LSRAGGAPTLAVGMAHIMSRLIPGEAMMAFWYHFALLFEALFILTAVDAGTRVARFMIQD 495

Query: 456 IIEMVKGPEILKNKWVASFILVFFGIALAWKGKWLV------------IWPAFSGMNQML 503
           +  +   P    +   A+ I  FF +AL W G +L             +WP F   NQML
Sbjct: 496 LGSIFYKPFGNTDSIPANLIATFFAVAL-W-GYFLYTGVTDPLGGINSLWPLFGIANQML 553

Query: 504 ASIAMMTASLWVAKIQRPSGFWKWAVLIPAL-FLWVTVTSAL---------IWFLIYVGK 553
           A +A++  ++ + K++R    + W VL+PA+  L+VT  + L         I FL + GK
Sbjct: 554 AGVALIMCAVVLIKMKRDR--YVWVVLVPAVGVLFVTCYAGLQKLFHSDPRISFLAHTGK 611

Query: 554 SS 555
            S
Sbjct: 612 YS 613


>pir||C81078 carbon starvation protein A homolog NMB1493 [similarity] -
           Neisseria meningitidis (group B strain MD58)
           >gi|7226734|gb|AAF41849.1| (AE002498) carbon starvation
           protein A [Neisseria meningitidis MC58]
           Length = 693
           
 Score =  267 bits (676), Expect = 2e-70
 Identities = 204/602 (33%), Positives = 303/602 (49%), Gaps = 77/602 (12%)

Query: 6   VILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGHHFASI 65
           ++ AA  +Y   Y  Y   + N+V+R DP+R TPA R  DG+DYVP H  VL+GHHFA+I
Sbjct: 37  MVTAAISVYCIAYRFYSLYIANRVMRLDPDRLTPAERHNDGLDYVPTHKGVLFGHHFAAI 96

Query: 66  AGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIAGKLMS 125
           AGAGP+VGP +A   G+LP  +W+ FG VF GAV D + L  S+R DGKS+  I  + + 
Sbjct: 97  AGAGPLVGPVLAAQMGYLPGTLWIIFGVVFAGAVQDMMVLFVSMRRDGKSLGDIVKQELG 156

Query: 126 KRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLYKVQIN 185
               +   + +   +++++A  A ++    V +P         + IA+ +G  +Y   I 
Sbjct: 157 TVPGVIASIGILMIMVIIMAVLALIVVKALVHSPWGTFTIAATMPIALFMG--IYTRYIR 214

Query: 186 -FKVG--TIIGIILLIIAIY---------IGFKFPLVASAKAWYIFLGAYVIVASSLPVW 233
             K+G  +I+G ILL++A+          IG  F L      W I +  Y  VAS LPVW
Sbjct: 215 PGKIGEISIVGFILLMLAVIYGEDVAKSSIGHWFDLDGIQLTWAIMI--YGFVASVLPVW 272

Query: 234 VLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVG-TFTAPAYTTF---SAHVVGGKPSPF 289
           +LL PRDYL+ +     L +G +A   +G   V      PA T F   S  V  G   PF
Sbjct: 273 LLLTPRDYLSTF-----LKIGTIAALALGIVIVNPALQMPAVTHFIDGSGPVFSGALFPF 327

Query: 290 WPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIA-- 347
              + + IACGA+SGFH+L+ SGT+ K L+NE H  ++GYGGM  E F++ + +++ A  
Sbjct: 328 ---LFITIACGAVSGFHALISSGTTPKMLENETHVRMIGYGGMLMESFVAIMALAAAASL 384

Query: 348 ---VYGLQIFHNAGIGITAETWAQAYAPLVAAKSITTETLQKLGVAAL----ENFKNGTV 400
              VY       A IG  A T         AA+ ITT+    +  A L    +     T+
Sbjct: 385 DPGVYFAMNSPAALIGTDANT---------AAEVITTKLQFPVDAATLLHTAKEVGENTI 435

Query: 401 IGKVG---IFASSYAHGLHDAFGIDIHLGTL--FASLWVSAFALTTLDTATRLGRFAWQE 455
           + + G     A   AH +      +  +     FA L+ + F LT +D  TR+ RF  Q+
Sbjct: 436 LSRAGGAPTLAVGMAHIMSRLIPGEAMMAFWYHFALLFEALFILTAVDAGTRVARFMIQD 495

Query: 456 IIEMVKGPEILKNKWVASFILVFFGIALAWKGKWLV------------IWPAFSGMNQML 503
           +  +   P    +   A+ I  FF +AL W G +L             +WP F   NQML
Sbjct: 496 LGSIFYKPFGNTDSIPANLIATFFAVAL-W-GYFLYTGVTDPLGGINSLWPLFGIANQML 553

Query: 504 ASIAMMTASLWVAKIQRPSGFWKWAVLIPAL-FLWVTVTSAL---------IWFLIYVGK 553
           A +A++  ++ + K++R    + W VL+PA+  L+VT  + L         I FL + GK
Sbjct: 554 AGVALIMCAVVLIKMKRDR--YVWVVLVPAVGVLFVTCYAGLQKLFHSDPRISFLAHAGK 611

Query: 554 SS 555
            S
Sbjct: 612 YS 613


>sp|P94532|CSTA_BACSU CARBON STARVATION PROTEIN A HOMOLOG >gi|7444676|pir||A69609 carbon
           starvation protein cstA [similarity] - Bacillus subtilis
           >gi|1770023|emb|CAA99596.1| (Z75208) carbon starvation
           induced protein [Bacillus subtilis]
           >gi|2635336|emb|CAB14831.1| (Z99118) carbon
           starvation-induced protein [Bacillus subtilis]
           Length = 598
           
 Score =  263 bits (664), Expect = 6e-69
 Identities = 191/619 (30%), Positives = 302/619 (47%), Gaps = 53/619 (8%)

Query: 1   MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
           MN+  +++A+  I    Y  YG  +  KV++ + ++PTPAH L DG DYVP +  V +GH
Sbjct: 1   MNAVTIVIASMCILAIAYRLYGTFMMVKVLKVNDDKPTPAHALEDGKDYVPTNKWVSFGH 60

Query: 61  HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
           HFA+IA AGP+VGP +A  +G+LP L+W+  G V  GAVHD + L +S+R +GKS+  +A
Sbjct: 61  HFAAIAAAGPLVGPILAAQFGYLPGLLWLLIGAVIGGAVHDIVVLFASMRKNGKSLSEVA 120

Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLY 180
              +         L + F + + +A  + V+     + P    A  + + IA+ +G L Y
Sbjct: 121 KDELGPVAGFCTGLSMLFIITITMAGLSMVVLHALERNPWGTFAVGITIPIAMGVG-LFY 179

Query: 181 KVQINFKVGTIIGIILLIIAIYIG-------FKFPLVASAKAWYIFLGAYVIVASSLPVW 233
           K   N K+ + +G + L+  ++IG           L    K   I L  Y   A++LPVW
Sbjct: 180 KKTGNLKLASTVGFLFLMAGVFIGPWVQTTALGDFLTLDTKTLAIALPVYAFFAAALPVW 239

Query: 234 VLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVG-TFTAPAYTTFSAHVVGGKP---SPF 289
           +LL PRDYL+++     + +G     I+G   V  +   PA+T F   V GG P    P 
Sbjct: 240 LLLAPRDYLSSF-----MKIGVFIALIVGVFVVNPSIPFPAFTEF---VKGGGPVLAGPV 291

Query: 290 WPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIAVY 349
           WP I + IACGA+SGFH+ VGSGT+ K L+       V +G M  E  +   +++ IA  
Sbjct: 292 WPFISITIACGAISGFHAFVGSGTTPKMLNKWSDMKPVAFGAMLVECLVG--IMALIAAT 349

Query: 350 GLQIFHNAGIGITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGTVIGKVGIFAS 409
            LQ      I  T E +      +V    ++ E    +G+  LE    G V   VG+   
Sbjct: 350 ALQPADYFAINSTPEVFRTLGMNVVHLPELSGE----IGL-DLEGRTGGAVTLAVGM--- 401

Query: 410 SYAHGLHDAFGIDIHLGTL---FASLWVSAFALTTLDTATRLGRFAWQEIIEMVKGPEIL 466
           +Y   +        HL +    F  ++ + F LT +D  TR+ R+  Q+    V  P + 
Sbjct: 402 TY---IFTGMPFFSHLASYFFQFVIMFEAVFILTAIDAGTRVARYLIQDFFGEVYKP-LK 457

Query: 467 KNKWVASFILVFFGIALAW-----KGKWLVIWPAFSGMNQMLASIAMMTASLWVAKIQRP 521
           K  W+   +       L W      G    IW  F   N+++AS+ ++  +  V KI   
Sbjct: 458 KTDWIPGSVFASALACLMWGYLLYSGDIGSIWALFGVSNRLMASVGLIIGATIVLKIADK 517

Query: 522 SGFWKWAVLIPALFLWVTVTSALIWFL--IYVGKS----SIWVSLITIVGLVLNFLLVI- 574
             +     LIP  +L+VTV  A  W +  +Y+       S+   +++I+ LVL F++++ 
Sbjct: 518 RRY-ILTCLIPLAYLYVTVNYAGYWMVRNVYLNPEAAGYSVLNGVLSIIMLVLGFIIIVA 576

Query: 575 ---DWYNAWKKPAEEYQAA 590
               W   WK P+   +A+
Sbjct: 577 AVKKWAQMWKDPSLRMEAS 595


>sp|P15078|CSTA_ECOLI CARBON STARVATION PROTEIN A >gi|7429186|pir||Q0ECNA carbon
           starvation protein A - Escherichia coli
           >gi|1778515|gb|AAB40798.1| (U82598) carbon starvation
           protein [Escherichia coli] >gi|1786814|gb|AAC73699.1|
           (AE000165) carbon starvation protein [Escherichia coli
           K12]
           Length = 701
           
 Score =  259 bits (655), Expect = 6e-68
 Identities = 190/585 (32%), Positives = 297/585 (50%), Gaps = 62/585 (10%)

Query: 1   MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
           +N+  +++A+  IY+  Y  YG  +   V+  DP R TPA R  DG+DYVP    VL+GH
Sbjct: 32  INALWIVVASVCIYLIAYRFYGLYIAKNVLAVDPTRMTPAVRHNDGLDYVPTDKKVLFGH 91

Query: 61  HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
           HFA+IAGAGP+VGP +A   G+LP +IW+  G V  GAV D++ L  S R DG+S+  + 
Sbjct: 92  HFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELV 151

Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLG-WLL 179
            + M     +   +  +  +++++A  A ++      +P         + +A+ +G +L 
Sbjct: 152 KEEMGPTAGVIALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLALFMGIYLR 211

Query: 180 YKVQINFKVGTIIGIILLIIAIYIGFKFPLVASAKAW---YIFLG--------AYVIVAS 228
           Y         ++IG++ LI AI  G     VA +  W   + F G         Y  VA+
Sbjct: 212 YLRPGRIGEVSVIGLVFLIFAIISG---GWVAESPTWAPYFDFTGVQLTWMLVGYGFVAA 268

Query: 229 SLPVWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPSP 288
            LPVW+LL PRDYL+ + L  G ++ GLA  I+  +   T T PA T F    V G   P
Sbjct: 269 VLPVWLLLAPRDYLSTF-LKIGTIV-GLAVGILIMR--PTLTMPALTKF----VDG-TGP 319

Query: 289 FW-----PTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVI 343
            W     P + + IACGA+SGFH+L+ SGT+ K L NE     +GYGGM  E F++ + +
Sbjct: 320 VWTGNLFPFLFITIACGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMAL 379

Query: 344 SSIAVY--GLQIFHNAGIGI-----TAETWAQAYAPLVAA--KSITTETLQKLGVAALEN 394
            S  +   G+    N+ + +     TA+  A A A +V++   SIT +TL ++     E 
Sbjct: 380 VSACIIDPGVYFAMNSPMAVLAPAGTADVVASA-AQVVSSWGFSITPDTLNQIASEVGEQ 438

Query: 395 FKNGTVIGKVG---IFASSYAHGLHDAFG--IDIHLGTLFASLWVSAFALTTLDTATRLG 449
               ++I + G     A   A+ LH A G  +D+     FA L+ + F LT +D  TR  
Sbjct: 439 ----SIISRAGGAPTLAVGMAYILHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAA 494

Query: 450 RFAWQEIIEMVKGPEILKNKWVASFILVFFGIALAW-----------KGKWLVIWPAFSG 498
           RF  Q+++ +V  P + +   + + +L      LAW            G    +WP F  
Sbjct: 495 RFMLQDLLGVV-SPGLKRTDSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGI 553

Query: 499 MNQMLASIAMMTASLWVAKIQRPSGFWKWAVLIPALFLWVTVTSA 543
            NQMLA +A+M  ++ + K++R    + W  L+P  +L +   +A
Sbjct: 554 ANQMLAGMALMLCAVVLFKMKRQR--YAWVALVPTAWLLICTLTA 596


>pir||D81365 carbon starvation protein A homolog Cj0917c [similarity] -
           Campylobacter jejuni (strain NCTC 11168)
           >gi|6968354|emb|CAB73174.1| (AL139076) carbon starvation
           protein A homolog [Campylobacter jejuni]
           Length = 703
           
 Score =  255 bits (644), Expect = 1e-66
 Identities = 187/572 (32%), Positives = 289/572 (49%), Gaps = 50/572 (8%)

Query: 1   MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
           +++  +++AA  IY+  Y  YG  +  KV+  D NR TPA    DG D+VP +  VL+GH
Sbjct: 32  VSAIYLVVAAVCIYMIGYRFYGSFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGH 91

Query: 61  HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
           HFA+IAGAGP+VGP +A   G+LPS++W+  G V  GAVHD++ L  S R  G+S+  + 
Sbjct: 92  HFAAIAGAGPLVGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMI 151

Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLY 180
              M K T     + ++  ++++IA  A V+     ++P       + + IA+ +G  + 
Sbjct: 152 KDEMGKFTGGVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMR 211

Query: 181 KVQINFKVG--TIIGIILLIIAIYIGFKFPLVASAKAW-----------YIFLGAYVIVA 227
            ++   +VG  +IIG +LLI+AI+ G    ++A+   W            I + AY  +A
Sbjct: 212 FIRPG-RVGEASIIGFVLLILAIHYG---SVIAADPYWAKIFTLEAPTLAIVMMAYGFIA 267

Query: 228 SSLPVWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPS 287
           S LPVW LL PRDYL+ ++    +V+  +A  ++            Y   +  V  G   
Sbjct: 268 SVLPVWFLLAPRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFDGTGPVFAGGVF 327

Query: 288 PFWPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLS--TIVISS 345
           PF   + + IACGA+SGFH+L+ SGT+ K L+NE H L VGYG M  E  ++   ++ + 
Sbjct: 328 PF---LFITIACGAISGFHALISSGTTPKMLENETHTLAVGYGSMLAESAVAIMALICAC 384

Query: 346 IAVYGLQIFHNAG---IGITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGTVIG 402
           I   GL    N+    IG      AQ  +      SIT E +  L      N    T++ 
Sbjct: 385 ILHPGLYFAINSSSALIGTDVVNVAQTISSW--GFSITPEEITTL----TTNIGEYTILS 438

Query: 403 KVG---IFASSYAHGLHDAF-GIDI-HLGTLFASLWVSAFALTTLDTATRLGRFAWQEII 457
           + G    FA   A  LH+ F G+D+      FA L+ + F LT +D  TR  RF  Q+I+
Sbjct: 439 RTGGAPTFAIGVALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDIL 498

Query: 458 EMVKGPEILKNKWVASFILVFFGIALAW-----------KGKWLVIWPAFSGMNQMLASI 506
             V  P    + + A  +     +A  W           KG    +WP F   NQMLA +
Sbjct: 499 GNVYKPLGDIHNYPAGLLATALSVA-GWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGM 557

Query: 507 AMMTASLWVAKIQRPSGFWKWAVLIPALFLWV 538
           A++ A+  + K+ +    + W  L+PA+F+ V
Sbjct: 558 ALLLATTILVKMGKAR--YTWVTLVPAVFVLV 587


>pir||H83070 conserved hypothetical protein PA4606 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|9950856|gb|AAG07994.1|AE004874_7 (AE004874)
           conserved hypothetical protein [Pseudomonas aeruginosa]
           Length = 688
           
 Score =  252 bits (638), Expect = 6e-66
 Identities = 182/584 (31%), Positives = 291/584 (49%), Gaps = 65/584 (11%)

Query: 1   MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
           +N+  +++AA  IY+  Y  Y   + +KV++ DPNR TPA    DG+DYVP +  +L+GH
Sbjct: 35  INALWIVVAAVAIYLVAYRYYSLFIASKVMQLDPNRATPAVLNNDGLDYVPTNKHILFGH 94

Query: 61  HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
           HFA+IAGAGP+VGP +A   G+LP  +W+  G V  GAV D++ L  S R +G+S+  + 
Sbjct: 95  HFAAIAGAGPLVGPVLAAQMGYLPGTLWLIAGVVLAGAVQDFMVLFISSRRNGRSLGELV 154

Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLY 180
            + M +          +  +I+++A  A ++      +P      +  + IA+ +G  + 
Sbjct: 155 REEMGQVAGTIALFGAFLIMIIILAVLALIVVKALADSPWGMFTVLATIPIALFMGVYMR 214

Query: 181 KVQINFKVG--TIIGIILLIIAIYIGFKFPLVASAKAW---YIFLG--------AYVIVA 227
            ++   ++G  +IIG+ LL+ +I++G +   VA++  W   + F G         Y  VA
Sbjct: 215 FIRPG-RIGEISIIGVFLLLGSIWLGGQ---VAASPEWAPHFTFSGIQITWMLIGYGAVA 270

Query: 228 SSLPVWVLLQPRDYLNAYILWFGLVLG-GLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKP 286
           S LPVW+LL PRDYL+ + L  G ++G  +   I+    +     PA T F+        
Sbjct: 271 SVLPVWLLLAPRDYLSTF-LKIGTIIGLAIGILIV----MPELKMPALTQFTDGTGPVWK 325

Query: 287 SPFWPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLS--TIVIS 344
              +P + + IACGA+SGFH+L+ SGT+ K L+ E     +GYGGM  E F++   +V +
Sbjct: 326 GSLFPFLFITIACGAVSGFHALISSGTTPKLLNREPDARYIGYGGMLMESFVAIMAMVAA 385

Query: 345 SIAVYGLQIFHNA----------GIGITAETWAQAYAPLVAAKSITTETLQKLGVAALEN 394
           S+   G+    N+           +  T  +W  A  P        T+T Q +G   +  
Sbjct: 386 SVIEPGIYFAMNSPPAVVGADVNAVAATVSSWGFAITP-----EQLTQTAQDIGETTILA 440

Query: 395 FKNGTVIGKVGIFASSYAHGLHDAFGIDIHLGTL--FASLWVSAFALTTLDTATRLGRFA 452
              G     VGI     AH LH     +  +     FA L+ + F LT +D  TR GRF 
Sbjct: 441 RAGGAPTLAVGI-----AHILHQVLPGENTMAFWYHFAILFEALFILTAVDAGTRAGRFM 495

Query: 453 WQEIIEMVKGPEILKNKWVASFILVFFGIALAWKGKWLV-------------IWPAFSGM 499
            Q+++            W A+ I     +AL W   WL+             +WP F   
Sbjct: 496 LQDLLGNFVPALKKTESWTANIIGTGGCVAL-W--GWLLYQGVVDPLGGINTLWPLFGIS 552

Query: 500 NQMLASIAMMTASLWVAKIQRPSGFWKWAVLIPALFLWVTVTSA 543
           NQMLA IA+M A++ + K++R    + W  ++PA +L +  T+A
Sbjct: 553 NQMLAGIALMLATVVLIKMKRQQ--YVWVTILPAAWLLICTTTA 594


>gb|AAF69024.1| (AF182514) unknown [Pseudomonas putida]
           Length = 767
           
 Score =  245 bits (618), Expect = 1e-63
 Identities = 174/577 (30%), Positives = 290/577 (50%), Gaps = 51/577 (8%)

Query: 1   MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
           +N+  +++AA  IY+  Y  Y   +  KV+  DP R TPA    DG+DYVP +  +L+GH
Sbjct: 35  INALWIVVAAVAIYLVAYRYYSLFIAXKVMXLDPRRATPAVLNXDGLDYVPTNKHILFGH 94

Query: 61  HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
           HFA+IAGAGP+VGP +A   G+LP  +W+  G V  GAV D++ L  S R +G+S+  + 
Sbjct: 95  HFAAIAGAGPLVGPVLAAQMGYLPGTLWLIAGVVLAGAVQDFMVLFLSTRRNGRSLGDMV 154

Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLY 180
            + M +          +  +I+++A  A ++     ++P      +  + IA+ +G  + 
Sbjct: 155 REEMGRIPGTIALFGCFLIMIIILAVLALIVVKALAESPWGMFTVMATIPIAMFMGIYMR 214

Query: 181 KVQINFKVG--TIIGIILLIIAIYIGFKFPLVASAKAW---YIFLG--------AYVIVA 227
            ++   ++G  +++G++LL+ +I++G    ++A+   W   + F G         Y  VA
Sbjct: 215 YIRPG-RIGEISVVGVVLLLASIWLG---GVIAADPVWGPAFTFTGVQITWMLVGYGFVA 270

Query: 228 SSLPVWVLLQPRDYLNAYILWFGLVLG-GLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKP 286
           + LPVW++L PRDYL+ + L  G +LG  +   II          PA T F+        
Sbjct: 271 AVLPVWLVLAPRDYLSTF-LKIGTILGLAIGILII----APELKMPALTQFTDGTGPVWK 325

Query: 287 SPFWPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLS--TIVIS 344
              +P + + IACGA+SGFH+L+ SGT+ K LDNE +   +GYGGM  E F++   +V +
Sbjct: 326 GTLFPFLFITIACGAVSGFHALISSGTTPKLLDNETNARYIGYGGMLMESFVAIMAMVAA 385

Query: 345 SIAVYGLQIFHNAGIGITAETWAQAYAPLVAAKS--ITTETLQKLGVAALENFKNGTVIG 402
           S+   G+    N+   +   T   + A  V++    IT E L+    A   +    T++ 
Sbjct: 386 SVIEPGVYFAMNSPAAVVG-TDVASVAQTVSSWGFLITPEQLE----AVARDIGEHTILA 440

Query: 403 KVG---IFASSYAHGLHDAFGIDIHLGTL--FASLWVSAFALTTLDTATRLGRFAWQEII 457
           + G     A   A  LH     +  +     FA L+ + F LT +D  TR GRF  Q+++
Sbjct: 441 RAGGAPTLAVGIAQILHQVLPGENTMAFWYHFAILFEALFILTAVDAGTRAGRFMLQDLL 500

Query: 458 EMVKGPEILKNKWVASFILVFFGIALAW-----------KGKWLVIWPAFSGMNQMLASI 506
                P + + +   + +L   G    W            G    +WP F   NQMLA I
Sbjct: 501 GSFV-PALKRTESWGANLLATAGCVALWGYLLYQGVIDPLGGINTLWPLFGISNQMLAGI 559

Query: 507 AMMTASLWVAKIQRPSGFWKWAVLIPALFLWVTVTSA 543
           A+M  ++ + K++     + W  L+PA++L +  T+A
Sbjct: 560 ALMLGTVVLIKMKAQR--YIWVTLLPAVWLLICTTAA 594


>pir||S14411 carbon starvation protein - Escherichia coli
           >gi|41081|emb|CAA37086.1| (X52904) carbon starvation
           gene product (AA 1-562) [Escherichia coli]
           Length = 562
           
 Score =  235 bits (593), Expect = 1e-60
 Identities = 171/516 (33%), Positives = 265/516 (51%), Gaps = 49/516 (9%)

Query: 1   MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
           +N+  +++A+  IY+  Y  YG  +   V+  DP R TPA R  DG+DYVP    VL+GH
Sbjct: 32  INALWIVVASVCIYLIAYRFYGLYIAKNVLAVDPTRMTPAVRHNDGLDYVPTDKKVLFGH 91

Query: 61  HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
           HFA+IAGAGP+VGP +A   G+LP +IW+  G V  G V D++ L  S R DG+S+  + 
Sbjct: 92  HFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGGVQDFMVLFVSTRRDGRSLGELV 151

Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLG-WLL 179
            + M     +   +  +  +++++A  A ++      +P         + +A+ +G +L 
Sbjct: 152 KEEMGPTAGVIALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLALFMGIYLR 211

Query: 180 YKVQINFKVGTIIGIILLIIAIYIGFKFPLVASAKAW---YIFLG--------AYVIVAS 228
           Y         ++IG++ LI AI  G     VA +  W   + F G         Y  VA+
Sbjct: 212 YLRPGRIGEVSVIGLVFLIFAIISG---GWVAESPTWAPYFDFTGVQLTWMLVGYGFVAA 268

Query: 229 SLPVWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPSP 288
            LPVW+LL PRDYL+ + L  G ++ GLA  I+  +   T T PA T F    V G   P
Sbjct: 269 VLPVWLLLAPRDYLSTF-LKIGTIV-GLAVGILIMR--PTLTMPALTKF----VDG-TGP 319

Query: 289 FW-----PTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVI 343
            W     P + + IACGA+SGFH+L+ SGT+ K L NE     +GYGGM  E F++ + +
Sbjct: 320 VWTGNLFPFLFITIACGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMAL 379

Query: 344 SSIAVY--GLQIFHNAGIGI-----TAETWAQAYAPLVAA--KSITTETLQKLGVAALEN 394
            S  +   G+    N+ + +     TA+  A A A +V++   SIT +TL ++     E 
Sbjct: 380 VSACIIDPGVYFAMNSPMAVLAPAGTADVVASA-AQVVSSWGFSITPDTLNQIASEVGEQ 438

Query: 395 FKNGTVIGKVG---IFASSYAHGLHDAFG--IDIHLGTLFASLWVSAFALTTLDTATRLG 449
               ++I + G     A   A+ LH A G  +D+     FA L+ + F LT +D  TR  
Sbjct: 439 ----SIISRAGGAPTLAVGMAYILHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAA 494

Query: 450 RFAWQEIIEMVKGPEILKNKWVASFILVFFGIALAW 485
           RF  Q+++ +V  P + +   + + +L      LAW
Sbjct: 495 RFMLQDLLGVV-SPGLKRTDSLPANLLATALCVLAW 529


>sp|P39396|YJIY_ECOLI HYPOTHETICAL 77.9 KD PROTEIN IN MRR-TSR INTERGENIC REGION
           >gi|1361118|pir||S56580 carbon starvation protein A
           homolog yjiY - Escherichia coli
           >gi|537196|gb|AAA97251.1| (U14003) ORF_f721 [Escherichia
           coli] >gi|1790814|gb|AAC77310.1| (AE000506) putative
           carbon starvation protein [Escherichia coli K12]
           Length = 721
           
 Score =  234 bits (590), Expect = 3e-60
 Identities = 186/599 (31%), Positives = 289/599 (48%), Gaps = 82/599 (13%)

Query: 6   VILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGHHFASI 65
           +++A+  +Y+  Y  Y   +  KV++ DP R TPA    DG++YVP +  VL+GHHFA+I
Sbjct: 44  IVVASVSVYLVAYRYYSLYIAQKVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHFAAI 103

Query: 66  AGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIAGKLMS 125
           AGAGP+VGP +A   G+LP  +W+  G V  GAV D++ L  S R +G S+  +  + M 
Sbjct: 104 AGAGPLVGPVLAAQMGYLPGTLWLLAGVVLAGAVQDFMVLFISSRRNGASLGEMIKEEMG 163

Query: 126 KRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLYKVQIN 185
                      +  +I+++A  A ++     ++P         + IA+ +G  +  ++  
Sbjct: 164 PVPGTIALFGCFLIMIIILAVLALIVVKALAESPWGVFTVCSTVPIALFMGIYMRFIRPG 223

Query: 186 FKVG--TIIGIILLIIAIYIG-------FKFPLVASAKAWYIF-LGAYVIVASSLPVWVL 235
            +VG  ++IGI+LL+ +IY G       +  P +        F L  Y  V++ LPVW++
Sbjct: 224 -RVGEVSVIGIVLLVASIYFGGVIAHDPYWGPALTFKDTTITFALIGYAFVSALLPVWLI 282

Query: 236 LQPRDYLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPSPFW----- 290
           L PRDYL A  L  G+++ GLA  I+          PA T +    + G   P W     
Sbjct: 283 LAPRDYL-ATFLKIGVIV-GLALGIVVLN--PELKMPAMTQY----IDG-TGPLWKGALF 333

Query: 291 PTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLS--TIVISSIAV 348
           P + + IACGA+SGFH+L+ SGT+ K L NE     +GYG M  E F++   +V +SI  
Sbjct: 334 PFLFITIACGAVSGFHALISSGTTPKLLANETDARFIGYGAMLMESFVAIMALVAASIIE 393

Query: 349 YGLQIFHN---AGIGITAETWAQ---AYAPLVAA--KSITT------------------- 381
            GL    N   AG+GIT     +     AP++ A  K +T                    
Sbjct: 394 PGLYFAMNTPPAGLGITMPNLHEMGGENAPIIMAQLKDVTAHAAATVSSWGFVISPEQIL 453

Query: 382 ETLQKLGVAALENFKNGTVIGKVGIFASSYAHGLHDA-----FGIDIHLGTLFASLWVSA 436
           +T + +G  ++ N   G     VGI     AH  H        G   H G LF +L    
Sbjct: 454 QTAKDIGEPSVLNRAGGAPTLAVGI-----AHVFHKVLPMADMGFWYHFGILFEAL---- 504

Query: 437 FALTTLDTATRLGRFAWQEIIEMVKGPEILKNKWVASFILVFFGIALAW----------- 485
           F LT LD  TR GRF  Q+++     P + K   + + I+   G    W           
Sbjct: 505 FILTALDAGTRSGRFMLQDLLGNFI-PFLKKTDSLVAGIIGTAGCVGLWGYLLYQGVVDP 563

Query: 486 KGKWLVIWPAFSGMNQMLASIAMMTASLWVAKIQRPSGFWKWAVLIPALFLWVTVTSAL 544
            G    +WP F   NQMLA++A++  ++ + K++R    + W  ++PA++L +  T AL
Sbjct: 564 LGGVKSLWPLFGISNQMLAAVALVLGTVVLIKMKRTQ--YIWVTVVPAVWLLICTTWAL 620


>sp|P95095|CSTA_MYCTU CARBON STARVATION PROTEIN A HOMOLOG >gi|7444675|pir||H70649 carbon
           starvation protein A homolog MTCY22D7.18c [similarity] -
           Mycobacterium tuberculosis (strain H37RV)
           >gi|1781150|emb|CAB06259.1| (Z83866) cstA [Mycobacterium
           tuberculosis]
           Length = 758
           
 Score =  233 bits (589), Expect = 3e-60
 Identities = 181/602 (30%), Positives = 284/602 (47%), Gaps = 69/602 (11%)

Query: 1   MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
           +N+  +++AA   Y+  +  Y + ++ KVVR   +  TPA  L DG DYVP    V++GH
Sbjct: 67  VNAVWIVVAAGCTYIIGFRFYARLIEMKVVRPRDDHATPAEILDDGTDYVPTDRRVVFGH 126

Query: 61  HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
           HFA+IAGAGP+VGP +A   G+LPS IW+  G V  G V DYL L  SVR  G+S+  + 
Sbjct: 127 HFAAIAGAGPLVGPVLATQMGYLPSSIWIVVGAVLAGCVQDYLVLWISVRRRGRSLGQMV 186

Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLG-WLL 179
              +     +A  + +   + +VIA  A V+     K+P    +  + + IA+ +G +L 
Sbjct: 187 RDELGATAGVAALVGIPVIITIVIAVLALVVVRALAKSPWGVFSIAMTIPIAIFMGCYLR 246

Query: 180 YKVQINFKVGTIIGIILLIIAIYIGFKFPLVASAKAWYI--------FLGAYVIVASSLP 231
           +         ++IGI LL++A+  G      +   AW+          L +Y   AS LP
Sbjct: 247 FLRPGRVSEVSLIGIGLLLLAVVSGDWVAHTSWGAAWFSLSPVTLCWLLISYGFAASVLP 306

Query: 232 VWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGV-GTFTAPAYTTFSAHVVGGKP---S 287
           VW+LL PRDYL+ +     + +G +A   IG         APA + F+    G  P    
Sbjct: 307 VWLLLAPRDYLSTF-----MKVGTIALLAIGVCAAHPIIEAPAVSKFAGS--GNGPVFAG 359

Query: 288 PFWPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIA 347
             +P + + IACGALSGFH+L+ SGT+ K L+ E    ++GYGGM TE F++ I + + A
Sbjct: 360 SLFPFLFITIACGALSGFHALICSGTTPKMLEKEGQMRVIGYGGMMTESFVAVIALLTAA 419

Query: 348 VYGLQIF--------HNAGIGITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGT 399
           +    ++        H      TA  +       +    +T + + +   +  E     T
Sbjct: 420 ILDQHLYFTLNAPSLHTHDSAATAAKYVNGLG--LTGSPVTPDHISQAAASVGEQ----T 473

Query: 400 VIGKVG---IFASSYAHGLHDAFGIDIHLGTL---FASLWVSAFALTTLDTATRLGRFAW 453
           ++ + G     A   A  LH   G  + L      FA ++ + F LTT+D  TR  RF  
Sbjct: 474 IVSRTGGAPTLAFGMAEMLHRVVG-GVGLKAFWYHFAIMFEALFILTTVDAGTRAARFMI 532

Query: 454 QE-------IIEMVKGPEILKNKWVASFILVFFGIALAWKGKWLV-----------IWPA 495
            +       ++  ++ P      W    ++V      AW    L+           ++P 
Sbjct: 533 SDALGNFGGVLRKLQNPSWRPGAWACRLVVV-----AAWGSILLLGVTDPLGGINTLFPL 587

Query: 496 FSGMNQMLASIAMMTASLWVAKIQRPSGFWKWAVLIPALF-LWVTVTSALIWFLIYVGKS 554
           F   NQ+LA IA+   ++ V K  R    W W   IP L+ L VT+T++  W  I+    
Sbjct: 588 FGIANQLLAGIALTVITVVVIKKGRLK--WAWIPGIPLLWDLAVTLTAS--WQKIFSADP 643

Query: 555 SI 556
           S+
Sbjct: 644 SV 645


>sp|P56190|CSTA_HELPY CARBON STARVATION PROTEIN A HOMOLOG >gi|7444674|pir||H64665 carbon
           starvation protein A homolog HP1168 [similarity] -
           Helicobacter pylori (strain 26695)
           >gi|2314324|gb|AAD08212.1| (AE000622) carbon starvation
           protein (cstA) [Helicobacter pylori 26695]
           Length = 687
           
 Score =  232 bits (586), Expect = 8e-60
 Identities = 184/581 (31%), Positives = 279/581 (47%), Gaps = 54/581 (9%)

Query: 1   MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
           +N+  +++A+A IY   Y  Y   +  KV++ D +R TPA    DG D+VP    + +GH
Sbjct: 32  INTLWLVVASACIYSIGYRFYSHFIAYKVLKLDDSRATPACVRNDGKDFVPTDKAITFGH 91

Query: 61  HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
           HFA+IAGAGP+VGP +A   G+LPS++W+  G+V  G VHD++ L +S+R DGKS+  + 
Sbjct: 92  HFAAIAGAGPLVGPILAAQMGYLPSILWILIGSVLGGCVHDFVVLFASIRRDGKSLGEMI 151

Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLG-WLL 179
              M +   M   L +   ++++IA  A V+      +P       + + IA+L+G ++ 
Sbjct: 152 KLEMGQFVGMIASLGILGIMLIIIAILAMVVVKALAHSPWGFFTIAMTIPIAILMGLYMR 211

Query: 180 YKVQINFKVGTIIGIILLIIAIYIG----------FKFPLVASAKAWYIFLGAYVIVASS 229
           +         ++IG ILLIIAIY G            F   AS+ AW I    Y  VAS 
Sbjct: 212 FFRPHKILEVSVIGFILLIIAIYAGKYVSLDPKLASIFTFEASSLAWMIM--GYGFVASI 269

Query: 230 LPVWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVG-TFTAPAYTTF---SAHVVGGK 285
           LPVW LL PRDYL+ +     L +G +   ++    V      P  T F   S  V  G 
Sbjct: 270 LPVWFLLAPRDYLSTF-----LKIGVIGVLVVAIIFVAPPLQIPKITPFVDGSGPVFAGS 324

Query: 286 PSPFWPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGF--LSTIVI 343
             PF   + + +ACG +SGFH+L+ SGT+ K L  E    LVGYG M  E    L  +V 
Sbjct: 325 VFPF---LFITVACGTISGFHALISSGTTPKMLAKESDARLVGYGSMVMESVVALMALVC 381

Query: 344 SSIAVYGLQIFHNA---GIG---ITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKN 397
           + I   GL    N+    IG     A +   ++   ++A+ I  E  + +G +++ +   
Sbjct: 382 AGILHPGLYFAINSPEVSIGKDIADAASVISSWGFNISAEEI-REMTKNIGESSILSRTG 440

Query: 398 GTVIGKVGIFASSYAHGLHD--AFGIDIHLGTLFASLWVSAFALTTLDTATRLGRFAWQE 455
           G     +G+    Y H L D        H   LF +L    F LT +D  TR  RF  Q+
Sbjct: 441 GAPTFAIGLAMIVY-HILGDPSVMAFWYHFAILFEAL----FILTAVDAGTRTARFMIQD 495

Query: 456 IIEMVKGPEILKNKWVASFILVFFGIALAW-----------KGKWLVIWPAFSGMNQMLA 504
           ++  V  P    + + A        +A  W           KG    +WP F   NQMLA
Sbjct: 496 LLGNVYKPLGDLSSYKAGIFATLLCVA-GWGYFLYQGTIDPKGGIYTLWPLFGVSNQMLA 554

Query: 505 SIAMMTASLWVAKIQRPSGFWKWAVLIPALFLWVTVTSALI 545
            +A++  ++ + K+ R  G    + L   L L +T  S ++
Sbjct: 555 GMALLLVTVVLFKMGRFKGA-MISALPAVLILSITFYSGIL 594


>sp|Q9ZK47|CSTA_HELPJ CARBON STARVATION PROTEIN A HOMOLOG >gi|7444673|pir||C71849 carbon
           starvation protein A homolog jhp1095 [similarity] -
           Helicobacter pylori (strain J99)
           >gi|4155693|gb|AAD06677.1| (AE001537) putative
           [Helicobacter pylori J99]
           Length = 687
           
 Score =  232 bits (585), Expect = 1e-59
 Identities = 181/582 (31%), Positives = 284/582 (48%), Gaps = 56/582 (9%)

Query: 1   MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
           +N+  +++A+A IY   Y  Y   +  +V++ D +R TPA    DG D+VP    + +GH
Sbjct: 32  INTLWLVVASACIYSIGYRFYSHFIAYRVLKLDDSRATPACVRNDGKDFVPTDKAITFGH 91

Query: 61  HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
           HFA+IAGAGP+VGP +A   G+LPS++W+  G+V  G VHD++ L +S+R DGKS+  + 
Sbjct: 92  HFAAIAGAGPLVGPILAAQMGYLPSILWILIGSVLGGCVHDFVVLFASIRRDGKSLGEMI 151

Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLG-WLL 179
              M K   M   L +   ++++IA  A V+      +P       + + IA+L+G ++ 
Sbjct: 152 KLEMGKFVGMIASLGILGIMLIIIAILAMVVVKALAHSPWGFFTIAMTIPIAILMGLYMR 211

Query: 180 YKVQINFKVGTIIGIILLIIAIYIG----------FKFPLVASAKAWYIFLGAYVIVASS 229
           +         ++IG ILLIIAIY G            F   A + AW I    Y  VAS 
Sbjct: 212 FFRPHKILEVSVIGFILLIIAIYAGKYVSLDPKLASIFTFEAGSLAWMIM--GYGFVASI 269

Query: 230 LPVWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVG-TFTAPAYTTF---SAHVVGGK 285
           LPVW LL PRDYL+ +     L +G +   ++    V      P  T F   S  V  G 
Sbjct: 270 LPVWFLLAPRDYLSTF-----LKIGVIGVLVVAIVFVAPPLQIPKITPFVDGSGPVFAGS 324

Query: 286 PSPFWPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGF--LSTIVI 343
             PF   + + +ACG +SGFH+L+ SGT+ K L  E    LVGYG M  E    L  +V 
Sbjct: 325 VFPF---LFITVACGTISGFHALISSGTTPKMLAKESDARLVGYGSMVMESVVALMALVC 381

Query: 344 SSIAVYGLQIFHNAGIGITAETWAQAYAPLVA-AKSITTETLQKLGVAALENFKNGTVIG 402
           + I   GL    N+      +  A A + + +   SI+ E ++++     +N    +++ 
Sbjct: 382 AGILHPGLYFAINSPEVSIGKDIADAASVISSWGFSISAEEIREM----TKNIGESSILS 437

Query: 403 KVG---IFASSYAHGLHDAFGIDIHLGTL--FASLWVSAFALTTLDTATRLGRFAWQEII 457
           + G    FA   A  ++   G    +     FA L+ + F LT +D  TR  RF  Q+++
Sbjct: 438 RTGGAPTFAIGLAMIVYHILGDPSVMAFWYHFAILFEALFILTAVDAGTRTARFMIQDLL 497

Query: 458 EMVKGPEILKNKWVASFILVFFGIALAW-----------KGKWLVIWPAFSGMNQMLASI 506
             +  P    + + A        +A  W           KG    +WP F   NQMLA +
Sbjct: 498 GNIYKPLGDLSSYKAGIFATLLCVA-GWGYFLYQGTIDPKGGIYTLWPLFGVSNQMLAGM 556

Query: 507 AMMTASLWVAKIQRPSGFWKWAVL--IPA-LFLWVTVTSALI 545
           A++  ++ + K+    G +K A++  +PA L L +T  S ++
Sbjct: 557 ALLLVTVVLFKM----GRFKGAIISALPAVLILAITFYSGIL 594


>emb|CAA86050.1| (Z37980) ORF12 [Escherichia coli]
           Length = 582
           
 Score =  207 bits (522), Expect = 2e-52
 Identities = 161/500 (32%), Positives = 243/500 (48%), Gaps = 67/500 (13%)

Query: 6   VILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGHHFASI 65
           +++A+  +Y+  Y  Y   +  KV++ DP R TPA    DG++YVP +  VL+GHHFA+I
Sbjct: 44  IVVASVSVYLVAYRYYSLYIAQKVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHFAAI 103

Query: 66  AGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIAGKLMS 125
           AGAGP+VGP +A   G LP  +W+  G V  GAV D++ L  S R +G S+  +  + M 
Sbjct: 104 AGAGPLVGPVLAAQMGILPGTLWLLAGVVLAGAVQDFMVLFISSRRNGPSLGEMIKEEMG 163

Query: 126 KRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLYKVQIN 185
                      +  +I+++A  A ++     ++P         + IA+ +G  +  ++  
Sbjct: 164 PLPGTIALFGCFLIMIIILAVLALIVVKALAESPWGVFTVCSTVPIALFMGIYMRFIRPG 223

Query: 186 FKVG--TIIGIILLIIAIYIG-------FKFPLVASAKAWYIF-LGAYVIVASSLPVWVL 235
            +VG  ++IGI+LL+ +IY G       +  P +        F L  Y  V++ LPVW++
Sbjct: 224 -RVGEVSVIGIVLLVASIYFGGVIAHDPYWGPALTFKDTTITFALIGYAFVSALLPVWLI 282

Query: 236 LQPRDYLNAYILWFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPSPFW----- 290
           L PRDYL A  L  G+++ GLA  I+          PA T +    + G   P W     
Sbjct: 283 LAPRDYL-ATFLKIGVIV-GLALGIVVLN--PELKMPAMTQY----IDG-TGPLWKGALF 333

Query: 291 PTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLS--TIVISSIAV 348
           P + + IACGA+SGFH+L+ SGT+ K L NE     +GYG M  E F++   +V +SI  
Sbjct: 334 PFLFITIACGAVSGFHALISSGTTPKLLANETDARFIGYGAMLMESFVAIMALVAASIIE 393

Query: 349 YGLQIFHN---AGIGITAETWAQ---AYAPLVAA--KSITT------------------E 382
            GL    N   AG+GIT     +     AP++ A  K +T                   +
Sbjct: 394 PGLYFAMNTPPAGLGITMPNLHEMGGENAPIIMAQLKDVTAHAQTVTSWGFVISPEQILQ 453

Query: 383 TLQKLGVAALENFKNGTVIGKVGIFASSYAHGLHDA-----FGIDIHLGTLFASLWVSAF 437
           T + +G  ++ N   G     VGI     AH  H        G   H G LF +L    F
Sbjct: 454 TAKDIGEPSVLNRAGGAPTLAVGI-----AHVFHKVLPVADMGFWYHFGILFEAL----F 504

Query: 438 ALTTLDTATRLGRFAWQEII 457
            LT LD  TR  RF  Q+++
Sbjct: 505 ILTALDAGTRSARFMLQDLL 524


>gb|AAD00522.1| (U81796) carbon starvation protein [Helicobacter pylori]
           Length = 383
           
 Score =  205 bits (515), Expect = 2e-51
 Identities = 128/358 (35%), Positives = 190/358 (52%), Gaps = 25/358 (6%)

Query: 1   MNSTVVILAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGH 60
           +N+  +++A+A IY   Y  Y   +  +V++ D NR TPA    DG D+VP    + +GH
Sbjct: 32  INTLWLVVASACIYSIGYRFYSHFIAYRVLKLDDNRATPACVRNDGKDFVPTDKAITFGH 91

Query: 61  HFASIAGAGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIA 120
           HFA+IAGAGP+VGP +A   G+LPS++W+  G+V  G VHD++ L +S+R DGKS+  + 
Sbjct: 92  HFAAIAGAGPLVGPILAAQMGYLPSILWILIGSVLGGCVHDFVVLFASIRRDGKSLGEMI 151

Query: 121 GKLMSKRTSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLG-WLL 179
              M +   M   L +   ++++IA  A V+      +P       + + IA+L+G ++ 
Sbjct: 152 KLEMGQFVGMIASLGILGIMLIIIAILAMVVVKALAHSPWGFFTIAMTIPIAILMGLYMR 211

Query: 180 YKVQINFKVGTIIGIILLIIAIYIG----------FKFPLVASAKAWYIFLGAYVIVASS 229
           +         ++IG ILLIIAIY G            F   AS+ AW I    Y  VAS 
Sbjct: 212 FFRPHKILEVSVIGFILLIIAIYAGKYISLDPKLASIFTFDASSLAWMIM--GYGFVASI 269

Query: 230 LPVWVLLQPRDYLNAYILWFGLVLGGLAFFIIGFKGVG-TFTAPAYTTF---SAHVVGGK 285
           LPVW LL PRDYL+ +     L +G +   ++    V      P  T F   S  V  G 
Sbjct: 270 LPVWFLLAPRDYLSTF-----LKIGVIGVLVVAIVFVAPPLQIPKITPFVDGSGPVFAGS 324

Query: 286 PSPFWPTIPLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVI 343
             PF   + + +ACG +SGFH+L+ SGT+ K L  E    LVGYG M  E  ++ + +
Sbjct: 325 VFPF---LFITVACGTISGFHALISSGTTPKMLAKESDARLVGYGSMVMESVVALMAL 379


>dbj|BAA35227.1| (D90701) Hypothetical protein 200 (entA 3' region) [Escherichia
           coli]
           Length = 584
           
 Score =  175 bits (439), Expect = 1e-42
 Identities = 149/499 (29%), Positives = 240/499 (47%), Gaps = 62/499 (12%)

Query: 87  IWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIAGKLMSKRTSMAFELYVWFALILVIAA 146
           IW+  G V  GAV D++ L  S R DG+S+  +  + M     +   +  +  +++++A 
Sbjct: 1   IWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIALVACFMIMVIILAV 60

Query: 147 FAAVIAGIFVKTPGAATASILFLLIAVLLG-WLLYKVQINFKVGTIIGIILLIIAIYIGF 205
            A ++      +P         + +A+ +G +L Y         ++IG++ LI AI  G 
Sbjct: 61  LAMIVVKALTHSPWGTYTVAFTIPLALFMGIYLRYLRPGRIGEVSVIGLVFLIFAIISG- 119

Query: 206 KFPLVASAKAW---YIFLGA--------YVIVASSLPVWVLLQPRDYLNAYILWFGLVLG 254
               VA +  W   + F G         Y  VA+ LPVW+LL PRDYL+ + L  G ++G
Sbjct: 120 --GWVAESPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLLAPRDYLSTF-LKIGTIVG 176

Query: 255 GLAFFIIGFKGVGTFTAPAYTTFSAHVVGGKPSPFW-----PTIPLVIACGALSGFHSLV 309
            LA  I+  +   T T PA T F    V G   P W     P + + IACGA+SGFH+L+
Sbjct: 177 -LAVGILIMRP--TLTMPALTKF----VDGT-GPVWTGNLFPFLFITIACGAVSGFHALI 228

Query: 310 GSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIAVY--GLQIFHNAGIGI-----T 362
            SGT+ K L NE     +GYGGM  E F++ + + S  +   G+    N+ + +     T
Sbjct: 229 SSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVSACIIDPGVYFAMNSPMAVLAPAGT 288

Query: 363 AETWAQAYAPLVAA--KSITTETLQKLGVAALENFKNGTVIGKVG---IFASSYAHGLHD 417
           A+  A A A +V++   SIT +TL ++     E     ++I + G     A   A+ LH 
Sbjct: 289 ADVVASA-AQVVSSWGFSITPDTLNQIASEVGEQ----SIISRAGGAPTLAVGMAYILHG 343

Query: 418 AFG--IDIHLGTLFASLWVSAFALTTLDTATRLGRFAWQEIIEMVKGPEILKNKWVASFI 475
           A G  +D+     FA L+ + F LT +D  TR  RF  Q+++ +V  P + +   + + +
Sbjct: 344 ALGGMMDVAFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVV-SPGLKRTDSLPANL 402

Query: 476 LVFFGIALAW-----------KGKWLVIWPAFSGMNQMLASIAMMTASLWVAKIQRPSGF 524
           L      LAW            G    +WP F   NQMLA +A+M  ++ + K++R    
Sbjct: 403 LATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLCAVVLFKMKRQR-- 460

Query: 525 WKWAVLIPALFLWVTVTSA 543
           + W  L+P  +L +   +A
Sbjct: 461 YAWVALVPTAWLLICTLTA 479


>pir||A82294 probable carbon starvation protein A VC0687 [imported] - Vibrio
           cholerae (group O1 strain N16961)
           >gi|9655126|gb|AAF93852.1| (AE004154) carbon starvation
           protein A, putative [Vibrio cholerae]
           Length = 494
           
 Score =  138 bits (344), Expect = 2e-31
 Identities = 138/550 (25%), Positives = 215/550 (39%), Gaps = 126/550 (22%)

Query: 8   LAAAIIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGHHFASIAG 67
           L      VG YF YG  ++ KV   +  R TPAH   DGVDYVP     +Y     +IAG
Sbjct: 5   LTCVAALVGGYFIYGAFVE-KVFGINEKRQTPAHTKTDGVDYVPMSTPKVYLVQLLNIAG 63

Query: 68  AGPIVGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIAGKLMSKR 127
            GPI GP +   +G   +++W+  G +F GAVHDY + M S+R  G S+  I G+ +   
Sbjct: 64  VGPIFGPIMGALYG-PAAMLWIVVGCIFAGAVHDYFSGMLSIRNGGASVPSITGRYLGNG 122

Query: 128 TSMAFELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLYKVQINFK 187
                 ++    L+LV   F +  AG+                        L   Q +F 
Sbjct: 123 AKHFMNIFAIVLLLLVGVVFVSAPAGMITN---------------------LINQQTDFT 161

Query: 188 VGTIIGIILLIIAIYIGFKFPLVASAKAWYIFLGAYVIVASSLPVWVLLQPRDYLNAYIL 247
           V     ++++                        AY I+A+ +PV          +  I 
Sbjct: 162 VSMTTMVVIIF-----------------------AYYILATIVPV----------DKIIG 188

Query: 248 WFGLVLGGLAFFIIGFKGVGTFTAPAYTTFSAHVVGG------------KPSPFWPTIPL 295
            F  + G L  F+     VG  TA A+++    V+GG               P WP + +
Sbjct: 189 RFYPLFGALLIFM----SVGLMTAIAFSS-EHQVLGGFEISDMVKNLNPNDMPLWPALFI 243

Query: 296 VIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTIVISSIAVYGLQIFH 355
            IACGA+SGFH+   S   ++ ++NE +G  V YG M  EG ++ I              
Sbjct: 244 TIACGAISGFHA-TQSPLMARCMENEKNGRFVFYGAMIGEGIIALI-------------- 288

Query: 356 NAGIGITAETWAQAYAPLVAAKSITTETLQKLGVAALENFKNGTVIGKVGIFASSYAHGL 415
                     W         +    +E ++  G     N   G   G +G+F        
Sbjct: 289 ----------WCTVALSFFGSLEALSEAVKNGGPG---NVVYGASFGLLGVF-------- 327

Query: 416 HDAFGIDIHLGTLFASLWVSAFALTTLDTATRLGRFAWQEIIEMVKGPEILKNKWVASFI 475
                     G + A L V    +T+ DTA R  R    E   M +  + L+N+ + +  
Sbjct: 328 ----------GGVIAFLGVVILPITSGDTAFRSSRLILAEYFNMEQ--KTLRNRLLMAVP 375

Query: 476 LVFFGIALAWKGKWLVIWPAFSGMNQMLASIAMMTASLWVAKIQRPSGFWKWAVLIPALF 535
           L   G  L  +  + +IW  F   NQ  A + + TA+ ++ +  +      W   +PALF
Sbjct: 376 LFVIGAVLT-QVDFGIIWRYFGFANQATAVMMLWTATAYLMRHNK----LHWICTVPALF 430

Query: 536 LWVTVTSALI 545
           +     S ++
Sbjct: 431 MTTVCISFIL 440


>sp|O86233|YB2X_HAEIN HYPOTHETICAL PROTEIN HI1126.1 >gi|3212213|gb|AAC22781.1| (U32792)
           H. influenzae predicted coding region HI1126.1
           [Haemophilus influenzae Rd]
           Length = 371
           
 Score =  125 bits (311), Expect = 1e-27
 Identities = 100/348 (28%), Positives = 168/348 (47%), Gaps = 45/348 (12%)

Query: 12  IIYVGLYFTYGKGLQNKVVRADPNRPTPAHRLYDGVDYVPAHPLVLYGHHFASIAGAGPI 71
           ++ +G YF YGK ++ K+   +P R TPA+++ DGVDY+P     ++     +IAG GPI
Sbjct: 15  VLIIG-YFIYGKIIE-KIFVINPKRQTPAYQVNDGVDYMPMSKTKIWLIQLLNIAGTGPI 72

Query: 72  VGPAVAMAWGWLPSLIWVWFGNVFIGAVHDYLALMSSVRYDGKSIQWIAGKLMSKRTSMA 131
            GP +   +G + +++W+  G +F GAVHDY   M S+R+ G ++ ++AGK + +   + 
Sbjct: 73  FGPILGALYGPV-AMLWIVIGCIFAGAVHDYFCGMLSIRHGGATMPYLAGKFLGRPVKVF 131

Query: 132 FELYVWFALILVIAAFAAVIAGIFVKTPGAATASILFLLIAVLLGWLLY----KVQINFK 187
                  AL+L++     ++  +FV +P     +I   +  V  G L+      V  + +
Sbjct: 132 INT---LALVLLL-----LVGVVFVASPAQLMGTITMDVFGVSQGALVLGDAEAVHHSVE 183

Query: 188 VGTIIGIILLIIAIYIGFKFPLVASAKAWYIFLGAYVIVASSLPVWVLLQPRDYLNAYIL 247
            G         I ++   K  +VA    W   + AY I+A+ LPV  ++     L   +L
Sbjct: 184 AGG--------IKVWGMDKATVVA---VWTAIIFAYYILATLLPVDKIIGRIYPLFGALL 232

Query: 248 WF---GLVLGGLA-----------FFIIGFKGVGTFTAPAYTTFSAHVVGGKPSPFWPTI 293
            F   G+V G +            F  I   G G      +  F+ +       P WP +
Sbjct: 233 LFMSVGMVYGLVVSHFSATDPIEFFRTINADGEGL----TWAKFTQNFQVKGDVPIWPLL 288

Query: 294 PLVIACGALSGFHSLVGSGTSSKQLDNELHGLLVGYGGMFTEGFLSTI 341
            L I+CGALSGFH+   +   ++  +NE  G  + YG M TEG ++ +
Sbjct: 289 FLTISCGALSGFHA-TQTPLMARCTENESEGRFIFYGAMITEGVIALV 335


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.141    0.454 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 227663908
Number of Sequences: 2977
Number of extensions: 9819790
Number of successful extensions: 38348
Number of sequences better than 1.0e-10: 21
Number of HSP's better than  0.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 38233
Number of HSP's gapped (non-prelim): 27
length of query: 592
length of database: 189,106,746
effective HSP length: 51
effective length of query: 541
effective length of database: 158,583,909
effective search space: 85793894769
effective search space used: 85793894769
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 168 (69.9 bits)