BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1556 (PAB1556) DE:Hypothetical protein
         (214 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75032 hypothetical protein PAB1556 - Pyrococcus abyssi (st...   427  e-119
pir||E72540 hypothetical protein APE1610 - Aeropyrum pernix (str...    80  2e-14

>pir||C75032 hypothetical protein PAB1556 - Pyrococcus abyssi (strain Orsay)
           >gi|5458665|emb|CAB50152.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 214
           
 Score =  427 bits (1086), Expect = e-119
 Identities = 214/214 (100%), Positives = 214/214 (100%)

Query: 1   MSVEFSTMILLIMVLAAVSTLQFYKGRKLNLLLMQHYLRSIEAVVKPKDKDYVWLGGYVG 60
           MSVEFSTMILLIMVLAAVSTLQFYKGRKLNLLLMQHYLRSIEAVVKPKDKDYVWLGGYVG
Sbjct: 1   MSVEFSTMILLIMVLAAVSTLQFYKGRKLNLLLMQHYLRSIEAVVKPKDKDYVWLGGYVG 60

Query: 61  FRAYYKLEDKDILKFEYTLTLLPRQSILYFPISLLINRHDKLYVVVRPTFDIKREVHFLQ 120
           FRAYYKLEDKDILKFEYTLTLLPRQSILYFPISLLINRHDKLYVVVRPTFDIKREVHFLQ
Sbjct: 61  FRAYYKLEDKDILKFEYTLTLLPRQSILYFPISLLINRHDKLYVVVRPTFDIKREVHFLQ 120

Query: 121 KGYFRMKPRIEREIELLKGEEEINGVKFEVLYEKSRDVEAVKEFISGFSKVKNVKHVALV 180
           KGYFRMKPRIEREIELLKGEEEINGVKFEVLYEKSRDVEAVKEFISGFSKVKNVKHVALV
Sbjct: 121 KGYFRMKPRIEREIELLKGEEEINGVKFEVLYEKSRDVEAVKEFISGFSKVKNVKHVALV 180

Query: 181 PKTNVIYVFFKPEPESIEDDVRNIIRFVKRMANR 214
           PKTNVIYVFFKPEPESIEDDVRNIIRFVKRMANR
Sbjct: 181 PKTNVIYVFFKPEPESIEDDVRNIIRFVKRMANR 214


>pir||E72540 hypothetical protein APE1610 - Aeropyrum pernix (strain K1)
           >gi|5105297|dbj|BAA80610.1| (AP000062) 228aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 228
           
 Score = 80.0 bits (194), Expect = 2e-14
 Identities = 56/213 (26%), Positives = 101/213 (47%), Gaps = 8/213 (3%)

Query: 10  LLIMVLAAV-STLQFYKGRKLNLLLMQHYLRSIEAVVKPKDKDYVWLGGYVGFRAYYKLE 68
           +++++LAA+ S   F++ RK  +      ++  E +VKP+D+ YV  G  VGF A Y + 
Sbjct: 12  IVVLILAALPSVAWFFQVRKRMIRRQSSLVKLFEQIVKPRDRRYVVHGYLVGFTAEYWVN 71

Query: 69  DKDILKFEYTLTLLPRQSILYFPISLLINRHDKLYVVV--RPTFDIKREVHFLQKGYFRM 126
              I K   T T  P  +  Y PI +L  R +KL V V  R +  ++ E H  ++G   +
Sbjct: 72  RGPIKKVYITYTTPPYHAFFYLPIIILFRRREKLEVAVEARDSLGVRGEAHIYRRGGIDV 131

Query: 127 KPRIEREIELLKGEEEINGVKFEVL----YEKSRDVEAV-KEFISGFSKVKNVKHVALVP 181
              +E++++      ++  +K   L    Y    D  AV +E     +++  V  V++VP
Sbjct: 132 VQLVEKDVKQSPLRRKLQRLKLPDLAAEAYATEGDALAVARELWGRLARLGAVFRVSIVP 191

Query: 182 KTNVIYVFFKPEPESIEDDVRNIIRFVKRMANR 214
              ++     P P+S    V  ++  V+  A +
Sbjct: 192 SRRLVLAVASPRPDSFGPVVEEVLSIVQAAAEK 224


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.143    0.406 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73039107
Number of Sequences: 2977
Number of extensions: 2966716
Number of successful extensions: 11350
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11348
Number of HSP's gapped (non-prelim): 2
length of query: 214
length of database: 189,106,746
effective HSP length: 54
effective length of query: 160
effective length of database: 156,788,448
effective search space: 25086151680
effective search space used: 25086151680
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 163 (67.9 bits)