BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1557 (PAB1557) DE:Hypothetical protein
(172 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75032 hypothetical protein PAB1557 - Pyrococcus abyssi (st... 355 2e-97
pir||D71136 hypothetical protein PH0856 - Pyrococcus horikoshii ... 300 7e-81
gi|11499375 conserved hypothetical protein [Archaeoglobus fulgid... 165 3e-40
pir||E72492 hypothetical protein APE2580 - Aeropyrum pernix (str... 78 6e-14
pir||G69069 hypothetical protein MTH152 - Methanobacterium therm... 75 5e-13
pdb|1EJE|A Chain A, Crystal Structure Of An Fmn-Binding Protein 75 5e-13
>pir||B75032 hypothetical protein PAB1557 - Pyrococcus abyssi (strain Orsay)
>gi|5458664|emb|CAB50151.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 172
Score = 355 bits (901), Expect = 2e-97
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MEGYRLLYPMRTYLVVSGHGDEANVMAADWVTVLSFDPFMVGVAIAPKRTTHKLIKKYNE 60
MEGYRLLYPMRTYLVVSGHGDEANVMAADWVTVLSFDPFMVGVAIAPKRTTHKLIKKYNE
Sbjct: 1 MEGYRLLYPMRTYLVVSGHGDEANVMAADWVTVLSFDPFMVGVAIAPKRTTHKLIKKYNE 60
Query: 61 FVISVPSLEMLRDVWIAGTKKGPSKLKDMGITLVPSRKVKVPSIKEALANIECEVYDTKD 120
FVISVPSLEMLRDVWIAGTKKGPSKLKDMGITLVPSRKVKVPSIKEALANIECEVYDTKD
Sbjct: 61 FVISVPSLEMLRDVWIAGTKKGPSKLKDMGITLVPSRKVKVPSIKEALANIECEVYDTKD 120
Query: 121 YGDHTLFVGKVLAYTYKEEAFEGGKPNLKFNFLAHVSWSEFVTFQDKIYRAE 172
YGDHTLFVGKVLAYTYKEEAFEGGKPNLKFNFLAHVSWSEFVTFQDKIYRAE
Sbjct: 121 YGDHTLFVGKVLAYTYKEEAFEGGKPNLKFNFLAHVSWSEFVTFQDKIYRAE 172
>pir||D71136 hypothetical protein PH0856 - Pyrococcus horikoshii
>gi|3257267|dbj|BAA29950.1| (AP000003) 172aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 172
Score = 300 bits (760), Expect = 7e-81
Identities = 138/172 (80%), Positives = 158/172 (91%)
Query: 1 MEGYRLLYPMRTYLVVSGHGDEANVMAADWVTVLSFDPFMVGVAIAPKRTTHKLIKKYNE 60
MEGYRLLYPMRTYL+VSGHG+E NVMAADWVTV+SFDPF+VGVA+APKRTTHKLIKKY E
Sbjct: 1 MEGYRLLYPMRTYLIVSGHGEETNVMAADWVTVVSFDPFIVGVAVAPKRTTHKLIKKYGE 60
Query: 61 FVISVPSLEMLRDVWIAGTKKGPSKLKDMGITLVPSRKVKVPSIKEALANIECEVYDTKD 120
FVISVPSL++LRDVWIAGTKKGPSKLK+M +TL+PS+KVKVPSI+EALANIEC V D +
Sbjct: 61 FVISVPSLDVLRDVWIAGTKKGPSKLKEMSVTLIPSKKVKVPSIEEALANIECRVIDARS 120
Query: 121 YGDHTLFVGKVLAYTYKEEAFEGGKPNLKFNFLAHVSWSEFVTFQDKIYRAE 172
YGDHT FVG+V+ YTYK+ AFE GKPNLK FLAHVSWSEFVTF +K+++AE
Sbjct: 121 YGDHTFFVGEVVGYTYKDYAFEKGKPNLKAKFLAHVSWSEFVTFSEKVHKAE 172
>gi|11499375 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7430351|pir||A69473 conserved hypothetical protein
AF1786 - Archaeoglobus fulgidus
>gi|2648759|gb|AAB89461.1| (AE000979) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 177
Score = 165 bits (413), Expect = 3e-40
Identities = 83/159 (52%), Positives = 115/159 (72%), Gaps = 4/159 (2%)
Query: 7 LYPMRTYLVVSGHGDEANVMAADWVTVLSFDPFMVGVAIAPKRTTHKLIKKYNEFVISVP 66
LYP+RTYL+VSG ++ NVM ADWV LSF P ++GVAI R TH LIK+ EFV++VP
Sbjct: 12 LYPLRTYLIVSGV-EKPNVMTADWVVPLSFSPQLLGVAIGHSRYTHSLIKECGEFVVAVP 70
Query: 67 SLEMLRDVWIAGTKKG--PSKLKDMGITLVPSRKVKVPSIKEALANIECEVYDTKDYGDH 124
++E+L+DVW AGT G +K++ + +TLV S+KVKVPSIKE AN+EC V + GDH
Sbjct: 71 TIELLKDVWKAGTLSGAKENKMEKLSLTLVESKKVKVPSIKECQANLECRVVKEVETGDH 130
Query: 125 TLFVGKVLAYTYKEEAFEGGKPNLKFNFLAHVSWSEFVT 163
TLFVG++L T+ +AF+ GKP++ + F+ H S+ + T
Sbjct: 131 TLFVGEILHVTH-GDAFKDGKPDINYKFVMHASFGKNFT 168
>pir||E72492 hypothetical protein APE2580 - Aeropyrum pernix (strain K1)
>gi|5106286|dbj|BAA81597.1| (AP000064) 263aa long
hypothetical protein [Aeropyrum pernix]
Length = 263
Score = 78.0 bits (189), Expect = 6e-14
Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 5 RLLYPMRTYLVVSGHGDEANVMAADWVTVLSFDPFMVGVAIAPKRTTHKLIKKYNEFVIS 64
R+LYP+ +V + H M A W SF P ++ VAIAP+R T+KL+++ F +
Sbjct: 11 RVLYPVIPVVVTAEHQGRVGGMLAAWWMQASFTPPILAVAIAPERYTYKLVRESGVFAFN 70
Query: 65 VPSLEMLRDVWIAG---TKKGPSKLKDMGITLVPSRKVKVPSIKEALANIECEVYDTKDY 121
+ +++ G + P K+++ G+ +V + P I EA A +E E+ D +
Sbjct: 71 LLDFKLVDKAPFLGDVSERLLPGKIREAGLNIVRGEVLGAPLIAEASAAVELELVDVVEA 130
Query: 122 GDHTLFVGKVLAYTYKEEAFEGGKPNLK 149
GDH +F+G+ A Y + F GG +L+
Sbjct: 131 GDHDVFLGEAKA-VYTVDDFRGGMWSLE 157
>pir||G69069 hypothetical protein MTH152 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621193|gb|AAB84658.1| (AE000803)
conserved protein [Methanobacterium thermoautotrophicum]
Length = 186
Score = 74.9 bits (181), Expect = 5e-13
Identities = 49/164 (29%), Positives = 88/164 (52%), Gaps = 6/164 (3%)
Query: 4 YRLLYPMRTYLVVSGHGDEANVMAA--DWVTVLSFDPFMVGVAIAPKRTTHKLIKKYNEF 61
+R+L P T +V + +E N+ AA + +S DP +V A AP T + I+ +EF
Sbjct: 15 HRILTPRPTVMVTTVD-EEGNINAAPFSFTMPVSIDPPVVAFASAPDHHTARNIESTHEF 73
Query: 62 VISVPSLEMLRDVWIAGTK--KGPSKLKDMGITLVPSRKVKVPSIKEALANIECEVYDTK 119
VI++ +++ +W+ G ++L+ G+ SR+VK P I EA ++ECE+
Sbjct: 74 VINITPADIIERMWVTARDIPAGENELEAAGLAWTSSRRVKPPRIVEAPGHLECELLRMF 133
Query: 120 DYGDHTLFVGKVLAYTYKEEAFEGGKPNLK-FNFLAHVSWSEFV 162
+ GDH L G V++ + + A + G +++ + HV ++FV
Sbjct: 134 EVGDHNLITGSVVSASVRSGAVKEGLLDVESVKPVLHVGGNKFV 177
>pdb|1EJE|A Chain A, Crystal Structure Of An Fmn-Binding Protein
Length = 192
Score = 74.9 bits (181), Expect = 5e-13
Identities = 49/164 (29%), Positives = 88/164 (52%), Gaps = 6/164 (3%)
Query: 4 YRLLYPMRTYLVVSGHGDEANVMAA--DWVTVLSFDPFMVGVAIAPKRTTHKLIKKYNEF 61
+R+L P T +V + +E N+ AA + +S DP +V A AP T + I+ +EF
Sbjct: 21 HRILTPRPTVMVTTVD-EEGNINAAPFSFTMPVSIDPPVVAFASAPDHHTARNIESTHEF 79
Query: 62 VISVPSLEMLRDVWIAGTK--KGPSKLKDMGITLVPSRKVKVPSIKEALANIECEVYDTK 119
VI++ +++ +W+ G ++L+ G+ SR+VK P I EA ++ECE+
Sbjct: 80 VINITPADIIERMWVTARDIPAGENELEAAGLAWTSSRRVKPPRIVEAPGHLECELLRMF 139
Query: 120 DYGDHTLFVGKVLAYTYKEEAFEGGKPNLK-FNFLAHVSWSEFV 162
+ GDH L G V++ + + A + G +++ + HV ++FV
Sbjct: 140 EVGDHNLITGSVVSASVRSGAVKEGLLDVESVKPVLHVGGNKFV 183
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.137 0.410
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68273179
Number of Sequences: 2977
Number of extensions: 2695407
Number of successful extensions: 5791
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5782
Number of HSP's gapped (non-prelim): 6
length of query: 172
length of database: 189,106,746
effective HSP length: 52
effective length of query: 120
effective length of database: 157,985,422
effective search space: 18958250640
effective search space used: 18958250640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)