BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1558 (PAB1558) DE:Hypothetical protein
(209 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75032 hypothetical protein PAB1558 - Pyrococcus abyssi (st... 412 e-114
pir||H71136 hypothetical protein PH0860 - Pyrococcus horikoshii ... 233 1e-60
pir||D71165 hypothetical protein PH0521 - Pyrococcus horikoshii ... 155 5e-37
pir||E71165 hypothetical protein PH0522 - Pyrococcus horikoshii ... 153 1e-36
pir||E75219 hypothetical protein PAB2167 - Pyrococcus abyssi (st... 129 3e-29
pir||C75213 hypothetical protein PAB0156 - Pyrococcus abyssi (st... 96 2e-19
pir||C75158 hypothetical protein PAB2065 - Pyrococcus abyssi (st... 87 2e-16
pir||G71197 hypothetical protein PH1853 - Pyrococcus horikoshii ... 85 8e-16
pir||C71249 hypothetical protein PH0250 - Pyrococcus horikoshii ... 82 7e-15
pir||C71056 hypothetical protein PH1145 - Pyrococcus horikoshii ... 79 3e-14
pir||B75088 hypothetical protein PAB1639 - Pyrococcus abyssi (st... 79 3e-14
pir||F71116 hypothetical protein PH0701 - Pyrococcus horikoshii ... 72 4e-12
pir||D71199 hypothetical protein PH1865 - Pyrococcus horikoshii ... 70 2e-11
>pir||A75032 hypothetical protein PAB1558 - Pyrococcus abyssi (strain Orsay)
>gi|5458663|emb|CAB50150.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 209
Score = 412 bits (1047), Expect = e-114
Identities = 209/209 (100%), Positives = 209/209 (100%)
Query: 1 MLKEIFNGIKFGEIALIEYDSNTTPVYVLHSLLSWSEEKGYKIVIFDVFDSLIVYRKMAE 60
MLKEIFNGIKFGEIALIEYDSNTTPVYVLHSLLSWSEEKGYKIVIFDVFDSLIVYRKMAE
Sbjct: 1 MLKEIFNGIKFGEIALIEYDSNTTPVYVLHSLLSWSEEKGYKIVIFDVFDSLIVYRKMAE 60
Query: 61 LLGFDTSLCKKAKVVKVGGRVNEGNVVMKLTVTEYGPFEKVLEEAIEQVYEDKTIVIPLG 120
LLGFDTSLCKKAKVVKVGGRVNEGNVVMKLTVTEYGPFEKVLEEAIEQVYEDKTIVIPLG
Sbjct: 61 LLGFDTSLCKKAKVVKVGGRVNEGNVVMKLTVTEYGPFEKVLEEAIEQVYEDKTIVIPLG 120
Query: 121 TEKVLSLYPFREQLSFTNFLALRVGDKRKKAFHFINTDLVKAVAPQILPMLEESFTTVMR 180
TEKVLSLYPFREQLSFTNFLALRVGDKRKKAFHFINTDLVKAVAPQILPMLEESFTTVMR
Sbjct: 121 TEKVLSLYPFREQLSFTNFLALRVGDKRKKAFHFINTDLVKAVAPQILPMLEESFTTVMR 180
Query: 181 LKKYGKVEKLIVVKSLNPKLDGLEVLAKS 209
LKKYGKVEKLIVVKSLNPKLDGLEVLAKS
Sbjct: 181 LKKYGKVEKLIVVKSLNPKLDGLEVLAKS 209
>pir||H71136 hypothetical protein PH0860 - Pyrococcus horikoshii
>gi|3257271|dbj|BAA29954.1| (AP000003) 221aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 221
Score = 233 bits (588), Expect = 1e-60
Identities = 104/206 (50%), Positives = 155/206 (74%), Gaps = 2/206 (0%)
Query: 2 LKEIFNGIKFGEIALIEYDSNTTPVYVLHSLLSWSEEKGYKIVIFDVFDSLIVYRKMAEL 61
L+++F KFGE+ L EY+S T +++++ L+ W+ EKGY +VIFD+FDSL +Y K AE+
Sbjct: 4 LEDLFEKSKFGELILFEYNSTTPLLFIVYPLIKWAREKGYPLVIFDIFDSLTIYTKQAEM 63
Query: 62 LGFDTSLCKKAKVVKVGGRVNEGNVVMKLTVTEYGPFEKVLEEAIEQVY--EDKTIVIPL 119
LG L + A +VK+GGR+N GN+++K+++ EYGPFEK LE+ +E+ Y + I I L
Sbjct: 64 LGIKDKLYEGANIVKIGGRMNLGNIILKISIIEYGPFEKTLEDTLEKAYGERENVISIVL 123
Query: 120 GTEKVLSLYPFREQLSFTNFLALRVGDKRKKAFHFINTDLVKAVAPQILPMLEESFTTVM 179
GTEK+ S YPFR+Q F+NFLAL+ GD+R+KAF+F+N DL++ ++P + P+LEE FTTV+
Sbjct: 124 GTEKIFSFYPFRDQFMFSNFLALKTGDRRRKAFYFVNVDLLEKISPPMGPLLEEEFTTVV 183
Query: 180 RLKKYGKVEKLIVVKSLNPKLDGLEV 205
+L K K+ V+KSLNP+LDG+E+
Sbjct: 184 KLTKEDNKIKMKVIKSLNPELDGMEL 209
>pir||D71165 hypothetical protein PH0521 - Pyrococcus horikoshii
>gi|3256926|dbj|BAA29609.1| (AP000002) 226aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 226
Score = 155 bits (387), Expect = 5e-37
Identities = 79/197 (40%), Positives = 127/197 (64%), Gaps = 2/197 (1%)
Query: 10 KFGEIALIEYDSNTTPVYVLHSLLSWSEEKGYKIVIFDVFDSLIVYRKMAELLGFDTSLC 69
KFGE LIE++S + P + ++SL++W++EKGY IV+ DV D+L +Y ++ G DT +
Sbjct: 14 KFGESILIEFNSVSFPSFGVYSLINWAKEKGYNIVVVDVLDTLKIYMGHEKIAGLDTGII 73
Query: 70 KKAKVVKVGGRVNEGNVVMKLTVTEYGPFEKVLEEAIEQVYEDKTIVIPLGTEKVLSLYP 129
V+K+GGR+ G ++ ++ +TE E L +++ ++KTI+I LG EKVLSLY
Sbjct: 74 DDVTVIKIGGRIEIGKILARILITEEKLLENELTRLCKEIKKEKTIIIILGIEKVLSLYS 133
Query: 130 --FREQLSFTNFLALRVGDKRKKAFHFINTDLVKAVAPQILPMLEESFTTVMRLKKYGKV 187
+ LS NF+ +G++ KK+F+FIN D++ + +L +LEE TTV+++ K G V
Sbjct: 134 TYTLDVLSLINFILSFIGEEWKKSFYFINVDMMSHLPFPVLQLLEEFATTVIKIVKKGSV 193
Query: 188 EKLIVVKSLNPKLDGLE 204
V+K+LN +LDG E
Sbjct: 194 LHYTVLKALNVELDGFE 210
>pir||E71165 hypothetical protein PH0522 - Pyrococcus horikoshii
>gi|3256927|dbj|BAA29610.1| (AP000002) 248aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 248
Score = 153 bits (384), Expect = 1e-36
Identities = 86/207 (41%), Positives = 132/207 (63%), Gaps = 10/207 (4%)
Query: 4 EIFNGIKFGEIALIEYDSNTTPVYVLHSLLSWSEEKGYKIVIFDVFDSLIVYRKMAELLG 63
+I+ G KFGE L+E+DS + ++SL W+ KG+K+ + DV D+L +Y A+++G
Sbjct: 28 DIWKGTKFGESVLMEFDSLSFSPLGVYSLAYWARMKGFKVSVVDVLDTLKIYLSYAKMIG 87
Query: 64 FDTSLCKKAKVVKVGGRVNEGNVVMKLTVTEYGPFEKVLEEAIEQVY----EDKTIVIPL 119
TS+ +V+K+GGR++ GNV ++ +TE EKV+E+ + ++Y +KTIVI L
Sbjct: 88 LGTSIANDIEVIKLGGRIDSGNVSTRIPITE----EKVMEKELMKLYPHEDNEKTIVIVL 143
Query: 120 GTEKVLSLY--PFREQLSFTNFLALRVGDKRKKAFHFINTDLVKAVAPQILPMLEESFTT 177
G EK L+L+ + LSF NF+ VG++ K+F+FIN DL+K + L MLEE TT
Sbjct: 144 GIEKFLALWCKLLPDILSFLNFMLSFVGEEWMKSFYFINVDLMKDFSFPALSMLEELSTT 203
Query: 178 VMRLKKYGKVEKLIVVKSLNPKLDGLE 204
V+ + K G V IV K+LNP++D LE
Sbjct: 204 VVEISKRGPVLHYIVRKALNPEIDSLE 230
>pir||E75219 hypothetical protein PAB2167 - Pyrococcus abyssi (strain Orsay)
>gi|5457713|emb|CAB49204.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 219
Score = 129 bits (320), Expect = 3e-29
Identities = 68/181 (37%), Positives = 106/181 (57%), Gaps = 3/181 (1%)
Query: 5 IFNGIKFGEIALIEYDSNTTPVYVLHSLLSWSEEKGYKIVIFDVFDSLIVYRKMAELLGF 64
I + +KFGE L+E+DS P L+ +L W+ +GY+++I+D+ D+L VYR ELLG
Sbjct: 11 IMDNVKFGETLLLEHDSQIIPGIGLYYILKWARARGYEVIIYDILDTLRVYRIQLELLGL 70
Query: 65 DTSLCKKAKVVKVGGRVNEGNVVMKLTVTEYGPFEKVLEEAIEQVYED--KTIVIPLGTE 122
D S+ + AKV+K GGR GNVV +L+ EK E+ E + D + I LG E
Sbjct: 71 DPSIVEYAKVIKEGGRFYVGNVVKRLSEVGVSVREKEYEKVEEDLARDHENIVTIVLGLE 130
Query: 123 KVLSLYPFREQ-LSFTNFLALRVGDKRKKAFHFINTDLVKAVAPQILPMLEESFTTVMRL 181
K+ L ++ ++ N + GD+R+ + +N D+VK P ++P+LEE TTV++
Sbjct: 131 KLFLLSQSKQDIMALLNSILKHSGDRRRLTIYTVNVDIVKVATPFVIPLLEEIATTVIKT 190
Query: 182 K 182
K
Sbjct: 191 K 191
>pir||C75213 hypothetical protein PAB0156 - Pyrococcus abyssi (strain Orsay)
>gi|5457663|emb|CAB49154.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 199
Score = 96.3 bits (236), Expect = 2e-19
Identities = 59/200 (29%), Positives = 110/200 (54%), Gaps = 8/200 (4%)
Query: 4 EIFNGIKFGEIALIEYDSNTTPVYVLHSLLSWSEEKGYKIVIFDVFDSLIVYRKMAELLG 63
+I + K GE L+EY + + ++L++ G +++ D+FD+ + ++ G
Sbjct: 2 DILSLFKIGETVLVEYSGTSRVEALFYNLIA---RAGLPVLVDDIFDTYYEFYVRLKVAG 58
Query: 64 FDTSLCKKAKVVKVGGRVNEGNVVMKLTVTEYGPFEKVLEEAIEQVYEDKTIV-IPLGTE 122
FD + + A VVK+GG GNVV +L +++Y E+ IE++ +DK + + LG
Sbjct: 59 FDVTPLEDAMVVKMGGSRRIGNVVGELNISKYVISEQEYATIIEKIKKDKPFLNLVLGIH 118
Query: 123 KVLSLYPFREQLSFTNFLALRVGDKRKKAFHFINTDLVKAVAPQILPMLEESFTTVMRLK 182
K++ L E ++ ++ VG K + AF+FIN +V +P IL +LEE T+V+ +
Sbjct: 119 KLIILGSILENMNVVKMVSSYVGRKERVAFYFINKGVVNKHSPPILDLLEEVATSVLEVT 178
Query: 183 KYGKVEKLIVVKSLNPKLDG 202
+ G +I+ K++N ++ G
Sbjct: 179 ERG----VIIKKAINKEIIG 194
>pir||C75158 hypothetical protein PAB2065 - Pyrococcus abyssi (strain Orsay)
>gi|5457856|emb|CAB49346.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 218
Score = 86.6 bits (211), Expect = 2e-16
Identities = 60/212 (28%), Positives = 111/212 (52%), Gaps = 15/212 (7%)
Query: 2 LKEIFNGIKFGEIALIEYDSNTTPVYVLHSLLSWSEEK---GYKIVIFDVFDSLIVYRKM 58
+ EI N K LIEY S L +L +EK I+I D D+L +++
Sbjct: 3 IDEIVNREKIS--VLIEYTSRDIIGPGLFRILKSIKEKYGDDAIIIITDFLDALPIHKYQ 60
Query: 59 AELLGFDTSLCKKAKVVKVGGRVNEGNVVMKLTVTEYGPFEKVLEEAIEQVYEDKT---- 114
AEL+G DT + + ++KVGGR++ GNV+ K+ ++ Y ++ + EE+++++ +
Sbjct: 61 AELIGIDTKIIDSSAIIKVGGRISSGNVIYKIPISSYPVYKTLYEESLKKLLDGMNPRGK 120
Query: 115 --IVIPLGTEKVLSLYPFREQLSFTNFLA--LRVGDKRKKAFHFINTDLVKAVAPQILPM 170
I I +G E +++++ +E + + + + D+ + F+N D +K+ + ILPM
Sbjct: 121 FFINIQIGIEGLMNVFERKEIMEQIHDIGEYIVTKDRDIRDIMFLNIDYLKSRSIDILPM 180
Query: 171 LEESFTTVMRLKKYGKVEKLIVVKSLNPKLDG 202
L F V+RL G+ ++KS+ P + G
Sbjct: 181 LRTIFPVVIRLMNDGR--SFSIMKSVFPNIKG 210
>pir||G71197 hypothetical protein PH1853 - Pyrococcus horikoshii
>gi|3258291|dbj|BAA30974.1| (AP000007) 218aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 218
Score = 84.7 bits (206), Expect = 8e-16
Identities = 60/214 (28%), Positives = 113/214 (52%), Gaps = 14/214 (6%)
Query: 1 MLKEIFNGIKFGEIA-LIEYDSNTTPVYVLHSLLSWSEE---KGYKIVIFDVFDSLIVYR 56
ML EI I +I+ L+EY S+ L ++L+ E + I+I D D+L + R
Sbjct: 1 MLMEISEVIGKEKISVLVEYTSDDIIGPTLFAMLNKIRETYREDALIIITDFLDTLPICR 60
Query: 57 KMAELLGFDTSLCKKAKVVKVGGRVNEGNVVMKLTVTEYGPFEKVLEEAIEQVYEDKT-- 114
AEL+G T + K+ ++KVGG++N GNV+ K+ ++ Y ++ + EE +E+V E
Sbjct: 61 YHAELIGVRTEVIDKSAIIKVGGKINSGNVLYKIPISSYPVYKTLYEETLEKVLESVDTH 120
Query: 115 ----IVIPLGTEKVLSLYPFREQLSFTNFLALRVGDKRK--KAFHFINTDLVKAVAPQIL 168
+ + +G E +++++ +E + + + + K K + FIN + ++ + ++L
Sbjct: 121 RGFFVNVQIGIENLMNIFEKKELIEQIHDIGEYIVTKNKDIRDLVFINVESLRNTSIEVL 180
Query: 169 PMLEESFTTVMRLKKYGKVEKLIVVKSLNPKLDG 202
+L F V++L G+ +V KS+ P L G
Sbjct: 181 SLLRTIFPVVVKLMNNGR--SFVVEKSVLPSLRG 212
>pir||C71249 hypothetical protein PH0250 - Pyrococcus horikoshii
>gi|3256639|dbj|BAA29322.1| (AP000001) 207aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 207
Score = 81.5 bits (198), Expect = 7e-15
Identities = 49/200 (24%), Positives = 106/200 (52%), Gaps = 7/200 (3%)
Query: 3 KEIFNGIKFGEIALIEYDSNTTPVYVLHSLLSWSEEKGYKIVIFDVFDSLIVYRKMAELL 62
++ F + GE L+EY + +L+ +++ S+ IV+ D+ D+ + ++
Sbjct: 6 EKFFKLFRVGETVLVEYSGTSRAELLLYYIVNNSK---LPIVVDDILDTYYEFYTRLKVA 62
Query: 63 GFDTSLCKKAKVVKVGGRVNEGNVVMKLTVTEYGPFEKVLEEAIEQVYEDKTIVIPLGTE 122
GFD + + +V+K+GG + G V+ +L +++Y E+ E + Q+ + I LG
Sbjct: 63 GFDVAPLENVQVIKMGGTKDIGRVIGRLNISKYVISEQEYMEIVSQLKDYPVINPVLGLH 122
Query: 123 KVLSLYPFREQLSFTNFLALRVGDKRKKAFHFINTDLVKAVAPQILPMLEESFTTVMRLK 182
K++ L E ++ ++ VG + + AF+F+N ++++ + IL +LEE T+++ +
Sbjct: 123 KLILLGNTFENINVVKMVSNYVGREERIAFYFVNRNVIEKHSSPILDLLEEVVTSILEIT 182
Query: 183 KYGKVEKLIVVKSLNPKLDG 202
G +I+ KS+ ++ G
Sbjct: 183 DSG----IIIKKSIKDEIAG 198
>pir||C71056 hypothetical protein PH1145 - Pyrococcus horikoshii
>gi|3257562|dbj|BAA30245.1| (AP000005) 221aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 221
Score = 79.2 bits (192), Expect = 3e-14
Identities = 55/211 (26%), Positives = 111/211 (52%), Gaps = 10/211 (4%)
Query: 3 KEIFNGIKFGEIALIEYDS-NTTPVYVLHSLLSWSEEKGYKIVIFDVFDSLIVYRKMAEL 61
+E+ + IKFGE ++ Y + +++ +L+ ++ + ++I D D+L + + ++
Sbjct: 5 EELLDEIKFGETTILFYPGLSYIREFIILKILNHAKIRNIPVIIDDNLDALSIVSRNLKI 64
Query: 62 LGFDTSLCKKAKVVKVGGRVNEGNVVMKLTV-----TEYGPFEKVLEEAIEQVYEDKTIV 116
LGF + A VVK GGR N G ++ ++ + + + ++ ++++ ++ I
Sbjct: 65 LGFAEDF-QDAYVVKTGGRQNIGKIITRVRLHPDPRVYIQEYSENIQRSLKEHRIERFIN 123
Query: 117 IPLGTEKVLSLYPFREQLSFTNFLALR--VGDKRKKAFHFINTDLVKAVAPQILPMLEES 174
I LG E + ++ + LA++ +GDKR+KAF+ +N + +K + PQ+ L
Sbjct: 124 IVLGIEDLFRYLNSPHEV-YLLVLAIQRFLGDKRRKAFYIVNENSLKVLPPQVYLELMRV 182
Query: 175 FTTVMRLKKYGKVEKLIVVKSLNPKLDGLEV 205
TT++R L ++KSLNP L G E+
Sbjct: 183 ATTIIRAVPNFITANLTIIKSLNPGLIGKEI 213
>pir||B75088 hypothetical protein PAB1639 - Pyrococcus abyssi (strain Orsay)
>gi|5458519|emb|CAB50007.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 215
Score = 79.2 bits (192), Expect = 3e-14
Identities = 65/214 (30%), Positives = 109/214 (50%), Gaps = 20/214 (9%)
Query: 2 LKEIFNGIKFGEIALIEYDSNT-TPVYVLHSLLSWSEEKGYKIVIFDVFDSLIVYRKMAE 60
+ + + IKFGE A++ Y SN+ +L+S L +S I+I D DSL + ++
Sbjct: 1 MNTVIDNIKFGETAIVLYPSNSYVRELLLNSALKYSRSNNVPILIDDNLDSLALVQRNLR 60
Query: 61 LLGFDTSLCKKAKVVKVGGRVNEGNVVMKLTVTEYGPFEKVLEEAIEQVYEDKT------ 114
+LG D + VVK GG+ N GNVV ++ PF I Q+Y +KT
Sbjct: 61 VLGIDEDF-RDVYVVKTGGKYNVGNVVARV------PFHPDPRVYI-QLYAEKTSSLKID 112
Query: 115 --IVIPLGTEKVLSLYPFREQLSFTNFLALR--VGDKRKKAFHFINTDLVKAVAPQILPM 170
+ I LG E + S ++ + L+++ +G+ R+KA + IN D ++ V +I
Sbjct: 113 GYLNISLGIEDLFSSLTSPHEM-YVLILSIQRFLGNTRRKAIYIINEDSLRTVPKEIKFE 171
Query: 171 LEESFTTVMRLKKYGKVEKLIVVKSLNPKLDGLE 204
LE +TV+R + + ++ ++KS N +L G E
Sbjct: 172 LERLASTVIRASQDLEKVRITILKSTNIELIGKE 205
>pir||F71116 hypothetical protein PH0701 - Pyrococcus horikoshii
>gi|3257109|dbj|BAA29792.1| (AP000003) 236aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 236
Score = 72.2 bits (174), Expect = 4e-12
Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 15/185 (8%)
Query: 12 GEIALIEYDSNTTPVYVLHSLLSWSEEKGYKIVIFDVFDSLIVYRKMAELLGFDTSLCKK 71
G I +IEY+S ++ + ++ +E+ I+I D+ D L V R + EL G + +
Sbjct: 21 GGIDIIEYESPELTPFLFYLIVKRLKERNSPIIILDILDQLHVIRTLLELSGIKPEIIDE 80
Query: 72 AKVVKVGGRVNEGNVVMKLTVTE-----YGPFEKVLEEAIEQVYEDKTIVIPLGTEKVLS 126
++V+K+GG + G V+ ++ V + F + ++E + + I+I +G EK++
Sbjct: 81 SEVIKLGGFLKTGKVIERIDVHKDIMILRDKFLRTIQELTKN--REHVILIGIGAEKMVR 138
Query: 127 LYPFREQLSFTNFLAL----RVGDKRKKAFHFINTDLVKAVAPQILPMLEESFTTVMRLK 182
+Y R+ + F F AL +GDKR F+N L+ + + LEE + V +K
Sbjct: 139 IYE-RDPMEFEYFFALIGRAMLGDKRLSRIIFLNKSLLD---KKTVIELEELASRVFEIK 194
Query: 183 KYGKV 187
G+V
Sbjct: 195 LIGEV 199
>pir||D71199 hypothetical protein PH1865 - Pyrococcus horikoshii
>gi|3258304|dbj|BAA30987.1| (AP000007) 237aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 237
Score = 69.9 bits (168), Expect = 2e-11
Identities = 62/207 (29%), Positives = 98/207 (46%), Gaps = 15/207 (7%)
Query: 2 LKEIFNGIKFGEIALIEYDSNTTPVYVLHSLLSWSEEKGYKIVIFDVFDSLIVYRKMAEL 61
L E GI GE+ LI Y S + L+ E + DV D L + + +L
Sbjct: 11 LFEYLGGIHPGELYLITYTSEEPVHLAFYILVKNLAESNIPFAVIDVLDHLHLIKVNLKL 70
Query: 62 LGFDTSLCKKAKVVKVGGRVNEGNVVMKLTV-TEYGPFEKVLEEAIEQVYEDK---TIVI 117
G DTS+ KAKV+KVGG + G +V +++ +E F K L E I ++ K I+I
Sbjct: 71 AGIDTSIIDKAKVIKVGGFIETGEIVKRISFDSEILVFGKQLNEMIMRLGASKGRPIIII 130
Query: 118 PLGTEKVLSLY---PFREQLSFTNFLALRVGDKRKKAFHFINTDLVKAVAPQILPMLEES 174
+G EK++ ++ P + F +G++ F+NT L++ A L E
Sbjct: 131 GVGAEKIVRMFEGSPSELETFFALLGRAPLGNESFSRIVFLNTSLLQKEA---LYEFIEL 187
Query: 175 FTTVMRLKKYGK--VEKLI---VVKSL 196
T V LK G+ ++K + +VKS+
Sbjct: 188 ATRVFELKLEGEAGIDKRLSFKIVKSM 214
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.139 0.385
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73054653
Number of Sequences: 2977
Number of extensions: 2878882
Number of successful extensions: 6745
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6727
Number of HSP's gapped (non-prelim): 13
length of query: 209
length of database: 189,106,746
effective HSP length: 56
effective length of query: 153
effective length of database: 155,591,474
effective search space: 23805495522
effective search space used: 23805495522
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)