BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1559 (hypD) DE:hydrogenase expression/formation protein
(hypD)
(367 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75031 hydrogenase expression/formation protein (hypd) PAB1... 760 0.0
pir||G71076 probable hydrogenase expression/formation protein hy... 668 0.0
sp|Q58400|Y993_METJA PUTATIVE HYDROGENASE EXPRESSION/FORMATION P... 333 1e-90
gi|11498966 hydrogenase expression/formation protein (hypD) [Arc... 330 1e-89
pir||D69009 hydrogenase expression/formation protein HypD - Meth... 322 4e-87
pir||F70399 hydrogenase expression/formation protein HypD - Aqui... 289 3e-77
sp|P31903|HYPD_ALCEU HYDROGENASE EXPRESSION/FORMATION PROTEIN HY... 284 9e-76
sp|P42033|HUPD_AZOCH HYDROGENASE EXPRESSION/FORMATION PROTEIN HU... 279 3e-74
sp|P31882|HYPD_AZOVI HYDROGENASE EXPRESSION/FORMATION PROTEIN HY... 277 2e-73
pir||H81410 hydrogenase isoenzymes formation protein Cj0625 [imp... 273 3e-72
sp|P40598|HYPD_RHILV HYDROGENASE EXPRESSION/FORMATION PROTEIN HY... 272 5e-72
sp|P31904|HYPD_BRAJA HYDROGENASE EXPRESSION/FORMATION PROTEIN HY... 271 1e-71
pir||S74470 hydrogenase isoenzymes formation protein hypD - Syne... 262 4e-69
pir||B64632 hydrogenase expression/formation protein - Helicobac... 261 7e-69
pir||F71883 hydrogenase expression/formation protein - Helicobac... 259 5e-68
gb|AAA69239.1| (U29579) CG Site no. 33116; ORF_o373 [Escherichia... 243 2e-63
sp|P24192|HYPD_ECOLI HYDROGENASE ISOENZYMES FORMATION PROTEIN HY... 243 3e-63
pir||S59984 hypD protein - Rhodobacter capsulatus >gi|46055|emb|... 236 2e-61
sp|P26411|HYPD_RHOCA HYDROGENASE EXPRESSION/FORMATION PROTEIN HY... 236 2e-61
gb|AAB64435.1| (AF006594) HupD [Anabaena PCC7120] 146 4e-34
gb|AAF20001.1|AF214145_8 (AF214145) hydrogenase maturating prote... 69 6e-11
>pir||E75031 hydrogenase expression/formation protein (hypd) PAB1559 -
Pyrococcus abyssi (strain Orsay)
>gi|5458659|emb|CAB50146.1| (AJ248287) hydrogenase
expression/formation protein (hypD) [Pyrococcus abyssi]
Length = 367
Score = 760 bits (1940), Expect = 0.0
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 1 MLEKFRDKEIAQKIVRKIHKEAKGFDELRFMHVCGTHEDTVTRAGIRSLLPENVKIMSGP 60
MLEKFRDKEIAQKIVRKIHKEAKGFDELRFMHVCGTHEDTVTRAGIRSLLPENVKIMSGP
Sbjct: 1 MLEKFRDKEIAQKIVRKIHKEAKGFDELRFMHVCGTHEDTVTRAGIRSLLPENVKIMSGP 60
Query: 61 GCPVCITPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTPMGSFADLKSEGFDVRVV 120
GCPVCITPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTPMGSFADLKSEGFDVRVV
Sbjct: 61 GCPVCITPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTPMGSFADLKSEGFDVRVV 120
Query: 121 YSIYDSYKIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLTPPAV 180
YSIYDSYKIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLTPPAV
Sbjct: 121 YSIYDSYKIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLTPPAV 180
Query: 181 EALLKAGTVFHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGILILIRMV 240
EALLKAGTVFHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGILILIRMV
Sbjct: 181 EALLKAGTVFHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGILILIRMV 240
Query: 241 KEGEAKIINEYSRVVKWEGNVKAQELINKFFEVKDAKWRALGIIPQSGLELKREWKDLEI 300
KEGEAKIINEYSRVVKWEGNVKAQELINKFFEVKDAKWRALGIIPQSGLELKREWKDLEI
Sbjct: 241 KEGEAKIINEYSRVVKWEGNVKAQELINKFFEVKDAKWRALGIIPQSGLELKREWKDLEI 300
Query: 301 RTLYNPDVPKLPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVSYEGTCSIF 360
RTLYNPDVPKLPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVSYEGTCSIF
Sbjct: 301 RTLYNPDVPKLPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVSYEGTCSIF 360
Query: 361 YKYGALF 367
YKYGALF
Sbjct: 361 YKYGALF 367
>pir||G71076 probable hydrogenase expression/formation protein hypD - Pyrococcus
horikoshii >gi|3257290|dbj|BAA29973.1| (AP000004) 367aa
long hypothetical hydrogenase expression/formation
protein hypD [Pyrococcus horikoshii]
Length = 367
Score = 668 bits (1705), Expect = 0.0
Identities = 311/367 (84%), Positives = 344/367 (92%)
Query: 1 MLEKFRDKEIAQKIVRKIHKEAKGFDELRFMHVCGTHEDTVTRAGIRSLLPENVKIMSGP 60
MLEKFR++ +AQ+I+ KI +E KG +E+RFMHVCGTHEDTVTR+GIRSLLP+NVKIMSGP
Sbjct: 1 MLEKFRERAVAQRIIEKIKEEVKGMEEVRFMHVCGTHEDTVTRSGIRSLLPKNVKIMSGP 60
Query: 61 GCPVCITPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTPMGSFADLKSEGFDVRVV 120
GCPVCITPVEDIV+MMEIM+ A+EEGE+IILTTFGDMY+IPTP GSFADLKS+G+DVR+V
Sbjct: 61 GCPVCITPVEDIVKMMEIMKIAREEGEEIILTTFGDMYKIPTPRGSFADLKSQGYDVRIV 120
Query: 121 YSIYDSYKIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLTPPAV 180
YSIYDSYKIA+EN DKLVVHFSPGFETTTAPTAGMLE V+ EGL+NF+IYSVHRLTPPAV
Sbjct: 121 YSIYDSYKIAKENPDKLVVHFSPGFETTTAPTAGMLEVVVEEGLENFRIYSVHRLTPPAV 180
Query: 181 EALLKAGTVFHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGILILIRMV 240
EALLKAGTVF GLI PGHVSTIIGV+GW YLTEK+ IPQVVAGFEPVDVLL IL LIR+V
Sbjct: 181 EALLKAGTVFQGLITPGHVSTIIGVKGWVYLTEKFGIPQVVAGFEPVDVLLAILTLIRLV 240
Query: 241 KEGEAKIINEYSRVVKWEGNVKAQELINKFFEVKDAKWRALGIIPQSGLELKREWKDLEI 300
K GEAKI+NEY+R VKWEGNVKAQELI KFFEVKDAKWRALGIIP+SGLEL++EWK+LEI
Sbjct: 241 KRGEAKIVNEYNRAVKWEGNVKAQELIRKFFEVKDAKWRALGIIPKSGLELRKEWKELEI 300
Query: 301 RTLYNPDVPKLPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVSYEGTCSIF 360
R Y+PDVPKLPDLEKGCLCGA+LRGLALP QCPHFGKTCTPRHPIGPCMVSYEGTC IF
Sbjct: 301 RNYYDPDVPKLPDLEKGCLCGAVLRGLALPTQCPHFGKTCTPRHPIGPCMVSYEGTCHIF 360
Query: 361 YKYGALF 367
YKYGALF
Sbjct: 361 YKYGALF 367
>sp|Q58400|Y993_METJA PUTATIVE HYDROGENASE EXPRESSION/FORMATION PROTEIN MJ0993
>gi|2127979|pir||A64424 hydrogenase expression/formation
protein D - Methanococcus jannaschii
>gi|1591656|gb|AAB98998.1| (U67542) hydrogenase
expression/formation protein (hypD) [Methanococcus
jannaschii]
Length = 358
Score = 333 bits (846), Expect = 1e-90
Identities = 164/358 (45%), Positives = 232/358 (63%), Gaps = 9/358 (2%)
Query: 7 DKEIAQKIVRKIHKEAKGFDELRFMHVCGTHEDTVTRAGIRSLLPENVKIMSGPGCPVCI 66
D+ + +K + KI+K A+ D+L+ MHVCG+HE T+ + GIR +LPEN+ ++ GPGCPVC+
Sbjct: 6 DRALIKKAIDKINKLAEKIDKLKIMHVCGSHEHTICKYGIRDVLPENITVVPGPGCPVCV 65
Query: 67 TPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTPMGSFADLKSEGFDVRVVYSIYDS 126
T ++I + + ++TT GDMYR+P S + +SEG DVR+VYSI ++
Sbjct: 66 TTQKEIDTAIYLADNG------YVITTLGDMYRVPGSEKSLMEKQSEGCDVRIVYSISEA 119
Query: 127 YKIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLTPPAVEALLKA 186
K+A++ RDK V + GFETT T L ++ N+ ++NF I + HR TPP +E LL
Sbjct: 120 VKMAKKERDKKFVFVAIGFETTAPTTGAELISLKNKDVNNFFILNCHRQTPPVMEFLLNE 179
Query: 187 GTVFHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGILILIRMVKEGEAK 246
G I PGHVSTI G++ + L EKY P VVAGFEP+DVL+ I+++++ V GEAK
Sbjct: 180 GVYLDAFICPGHVSTITGLKPYYGLCEKYKAPMVVAGFEPIDVLMAIIMILKQVISGEAK 239
Query: 247 IINEYSRVVKWEGNVKAQELINKFFEVKDAKWRALGIIPQSGLELKREWKDLEIRTLYNP 306
+ NEY R VK EGNV AQ++IN+ FE D WR ++ G L+ ++K +I +
Sbjct: 240 VENEYIRAVKPEGNVLAQKIINEVFESIDVPWRGFPVVKNGGFGLREKYKKFDI--YEHE 297
Query: 307 DVPKLPD-LEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVSYEGTCSIFYKY 363
D+P++ + + KGC+C ILRG LP CP FG CTP +P+G CMVS EGTC IFYKY
Sbjct: 298 DIPEIKEKIPKGCICDKILRGEKLPTDCPLFGTVCTPLNPVGSCMVSDEGTCRIFYKY 355
>gi|11498966 hydrogenase expression/formation protein (hypD) [Archaeoglobus
fulgidus] >gi|7447453|pir||A69421 hydrogenase
expression/formation protein (hypD) homolog -
Archaeoglobus fulgidus >gi|2649201|gb|AAB89873.1|
(AE001009) hydrogenase expression/formation protein
(hypD) [Archaeoglobus fulgidus]
Length = 371
Score = 330 bits (838), Expect = 1e-89
Identities = 167/356 (46%), Positives = 236/356 (65%), Gaps = 15/356 (4%)
Query: 13 KIVRKIHKEAKGFDELRFMHVCGTHEDTVTRAGIRSLLPENVKIMSGPGCPVCITPVEDI 72
++ KI + +K F+ ++ MH+CGTHEDT+T+ +RSLLPEN+ ++SGPGCPVCITP EDI
Sbjct: 22 RLSEKIRELSKEFESVKIMHLCGTHEDTITKYNLRSLLPENISLLSGPGCPVCITPDEDI 81
Query: 73 VRMMEIMRKAKEEGEDIILTTFGDMYRIPTPMGSFADLKSEGFDVRVVYSIYDSYKIAQE 132
+M ++ K E+I L TFGDM R+P S L++EG+D+R+VYSI+DS K+A E
Sbjct: 82 QMVMHLLEK-----ENITLATFGDMARVPFQGKSLFTLRAEGYDIRIVYSIFDSLKLA-E 135
Query: 133 NRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLTPPAVEALLKAGTVFHG 192
+ D+ VVHF+ GFETT TA + + +NF ++S HR PAV AL + TV
Sbjct: 136 SSDRPVVHFAIGFETTMPSTA----IALLDEKENFYVFSAHRFFIPAVHALCENTTV-DA 190
Query: 193 LIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGILILIRMVKEGEAKIINEYS 252
I+PGHVSTIIGV+ + + +KY IPQV+AGFEP DV+L I +L+ + +G ++INEYS
Sbjct: 191 FINPGHVSTIIGVKPYREILKKYGIPQVIAGFEPEDVMLAIYLLLEAMSDGRREVINEYS 250
Query: 253 RVVKWEGNVKAQELINKFFEVKDAKWRALGIIPQSGLELKREWKDLEIRTLYN---PDVP 309
R VK EGNV+A E +++ F +D WR LG++ SG L + ++ + R ++ D
Sbjct: 251 RAVKEEGNVRALEAMDRVFRKEDWSWRGLGVVKGSGGALAKRFEQFDARKVFEDAFADFQ 310
Query: 310 KLPDLEKG-CLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVSYEGTCSIFYKYG 364
+ D K C CG +L+G+A P CP F K C PR+P+G CMVS EGTC+I+ G
Sbjct: 311 PVEDKSKRLCRCGDVLKGIATPKDCPLFMKACNPRNPVGACMVSVEGTCNIWATSG 366
>pir||D69009 hydrogenase expression/formation protein HypD - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622170|gb|AAB85561.1| (AE000877) hydrogenase
expression/formation protein HypD [Methanobacterium
thermoautotrophicum]
Length = 348
Score = 322 bits (817), Expect = 4e-87
Identities = 153/359 (42%), Positives = 241/359 (66%), Gaps = 14/359 (3%)
Query: 8 KEIAQKIVRKIHKEAKGFDELRFMHVCGTHEDTVTRAGIRSLLPENVKIMSGPGCPVCIT 67
K +++++V +I + ++ ++ MHVCG+HE T+ + G+RSLLPE V++++GPGCPVC
Sbjct: 2 KNLSRELVSRIQEISR---PVKIMHVCGSHEHTIMQHGVRSLLPEEVEVVAGPGCPVCCV 58
Query: 68 PVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTPMGSFADLKSEGFDVRVVYSIYDSY 127
P +I +E+ R+ + +TTFGDM R+P GS AD +++G DVR+VY + ++
Sbjct: 59 PAREIDECIELARQG------VTITTFGDMLRVPGSRGSLADARADGADVRIVYGVGNAV 112
Query: 128 KIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLTPPAVEALLKAG 187
+IA++ D+ VV + GFETT TA +++ +NF + S HRL PPA+ L+++G
Sbjct: 113 EIARK-LDREVVFMAAGFETTAPTTAS---EILSGPPENFSVLSCHRLIPPALRFLIESG 168
Query: 188 TV-FHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGILILIRMVKEGEAK 246
V + LI+PGHVSTIIG++ + + YNIPQV+AGF P+D+L+ + +++R + GEAK
Sbjct: 169 EVNLNALIEPGHVSTIIGMKPYEPFSRDYNIPQVIAGFNPLDILMAVYMILRQIDRGEAK 228
Query: 247 IINEYSRVVKWEGNVKAQELINKFFEVKDAKWRALGIIPQSGLELKREWKDLEIRTLYNP 306
+ NEY R VK EGN+KAQ+++++ F+V + +WR +IP+S E++ E+ + R ++
Sbjct: 229 VENEYKRAVKPEGNLKAQKVMDEVFKVTEREWRGFPVIPESVYEIRDEFSEFNAREKFDI 288
Query: 307 DVPKLPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVSYEGTCSIFYKYGA 365
+V D GC+CGA+LRG+A P +C F CTP PIG CMVS EGTC+I Y+Y +
Sbjct: 289 EVEDTVDTPAGCICGAVLRGVARPEECKLFKNECTPTSPIGACMVSREGTCNIAYRYSS 347
>pir||F70399 hydrogenase expression/formation protein HypD - Aquifex aeolicus
>gi|2983616|gb|AAC07185.1| (AE000726) hydrogenase
expression/formation protein HypD [Aquifex aeolicus]
Length = 380
Score = 289 bits (732), Expect = 3e-77
Identities = 141/373 (37%), Positives = 232/373 (61%), Gaps = 16/373 (4%)
Query: 1 MLEKFRDKEIAQKIVRKIHKEAKGFDE-LRFMHVCGTHEDTVTRAGIRSLLPENVKIMSG 59
+ E ++DKE K+ KI K ++ + M CG H + + GI LL V+ + G
Sbjct: 8 IFEAYKDKERVLKLSEKIKKLSEKIGRTVNIMEFCGGHTHAIMKYGIDQLLKGVVRFIHG 67
Query: 60 PGCPVCITPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIP-TPMGSFADLKSEGFDVR 118
PGCPVC+ P++ I +E+ ++ +D+I+ ++GD+ R+P + S ++++EG DVR
Sbjct: 68 PGCPVCVMPMQRIDLAIELAKR-----KDVIMCSYGDLLRVPGSKRKSLLNVRAEGADVR 122
Query: 119 VVYSIYDSYKIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLTPP 178
+VYS D+ KIA+EN DK V+ F+ GFETTT TA +++ EG+ N + S H +TP
Sbjct: 123 MVYSCLDTLKIAKENPDKKVIFFAIGFETTTPQTAVLIKKAKEEGIKNLFVVSNHVITPA 182
Query: 179 AVEALLKAGTV-------FHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLL 231
A++ +L A + I PGHVS IIG + + Y E++ P V+AGFEP++VL
Sbjct: 183 AIQHILNAPEIREIGKVEIDAFIGPGHVSVIIGTKPYHYFAEEFQKPVVIAGFEPLNVLK 242
Query: 232 GILILIRMVKEGEAKIINEYSRVVKWEGNVKAQELINKFFEV-KDAKWRALGIIPQSGLE 290
+ ++++ + +G A++ N Y+R V ++GN+KAQ L+ + FE+ K+ +WR LG IP S L+
Sbjct: 243 AVYLILKQIYKGRAEVKNNYTRFVTYKGNLKAQNLVAELFELRKEFEWRGLGTIPYSALK 302
Query: 291 LKREWKDLEIRTLYNPDVPKLPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCM 350
+++E+++ + ++ ++P+ P C+CG ++RG+A P C FG CTP +P+G CM
Sbjct: 303 IRKEYEEFDAEKVFEVELPE-PKEHPACICGKVIRGVARPTDCKLFGTVCTPSNPLGSCM 361
Query: 351 VSYEGTCSIFYKY 363
VS EG C+ +YKY
Sbjct: 362 VSSEGACAAYYKY 374
>sp|P31903|HYPD_ALCEU HYDROGENASE EXPRESSION/FORMATION PROTEIN HYPD
>gi|321749|pir||S29978 hypD protein - Alcaligenes
eutrophus >gi|38775|emb|CAA49734.1| (X70183) HYPD
[Ralstonia eutropha]
Length = 379
Score = 284 bits (720), Expect = 9e-76
Identities = 147/372 (39%), Positives = 218/372 (58%), Gaps = 15/372 (4%)
Query: 2 LEKFRDKEIAQKIVRKIHKEAKGFDELRFMHVCGTHEDTVTRAGIRSLLPENVKIMSGPG 61
+E+FRD E+AQ+I + EA+ FM CG H ++R G+ LLPENV+++ GPG
Sbjct: 4 IEEFRDGELAQRIAAHVRAEARPGQRYNFMEFCGGHTHAISRYGVTELLPENVRMIHGPG 63
Query: 62 CPVCITPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTPMG-SFADLKSEGFDVRVV 120
CPVC+ P+ I + + + D I+ T+GD R+P G S K+ G D+R+V
Sbjct: 64 CPVCVLPIGRIDLALHLALE-----RDAIVCTYGDTMRVPASGGMSLIRAKAHGADIRMV 118
Query: 121 YSIYDSYKIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLTPPAV 180
YS D+ KIAQ + + VV + GFETTT PTA ++ +DNF + H LTP A+
Sbjct: 119 YSAADALKIAQRHPQREVVFLAIGFETTTPPTALIIREAKARQVDNFSVLCCHVLTPSAI 178
Query: 181 EALLKA------GTV-FHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGI 233
+L++ GTV G + P HVS +IG R + + + +Y P V+AGFEP+DV+ I
Sbjct: 179 THILESPEVRDYGTVPIDGFVGPAHVSIVIGTRPYEHFSREYGKPVVIAGFEPLDVMQAI 238
Query: 234 LILIRMVKEGEAKIINEYSRVVKWEGNVKAQELINKFFEVKDA-KWRALGIIPQSGLELK 292
L+L+R V G A++ NE+ R V +GN AQ ++++ FE++ + +WR LG +P S L ++
Sbjct: 239 LMLVRQVNSGRAEVENEFVRAVTRDGNESAQAMVSEVFELRPSFEWRGLGEVPYSALRIR 298
Query: 293 REWKDLEIRTLYNPDVPKLPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVS 352
++ + ++ +PD K C CGAILRG+ P C F CTP +P+G CMVS
Sbjct: 299 AQFARFDAEQRFDLRYRPVPD-NKACECGAILRGVKKPTDCKLFATVCTPENPMGSCMVS 357
Query: 353 YEGTCSIFYKYG 364
EG C+ Y YG
Sbjct: 358 SEGACAAHYSYG 369
>sp|P42033|HUPD_AZOCH HYDROGENASE EXPRESSION/FORMATION PROTEIN HUPD
>gi|2120752|pir||I39743 hydrogenase homolog 1 -
Azotobacter chroococcum >gi|142321|gb|AAA22136.1|
(M92282) hydrogenase-related protein [Azotobacter
chroococcum] >gi|382215|prf||1819270A hydrogenase
[Azotobacter chroococcum]
Length = 379
Score = 279 bits (707), Expect = 3e-74
Identities = 148/371 (39%), Positives = 223/371 (59%), Gaps = 14/371 (3%)
Query: 2 LEKFRDKEIAQKIVRKIHKEAKGFDELRFMHVCGTHEDTVTRAGIRSLLPENVKIMSGPG 61
+++FRD A+++ +I EA + R M CG H + R GI LLP +V+++ GPG
Sbjct: 4 VDEFRDGATARQLAARIAAEADPARQYRLMEFCGGHTHAIFRYGIPDLLPASVRLIHGPG 63
Query: 62 CPVCITPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTP-MGSFADLKSEGFDVRVV 120
CPVC+ P+ + +E+ R+ ++IL T+GDM R+P S ++E VR++
Sbjct: 64 CPVCVMPIGRLDMAIELARRP-----EVILCTYGDMLRVPASGRVSLLKARAESAAVRML 118
Query: 121 YSIYDSYKIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLTPPAV 180
YS ++ K+AQ+N K VV F+ GFETTT PTA ++E GL NF ++ H LTP A+
Sbjct: 119 YSPAEALKLAQDNPSKEVVFFAIGFETTTPPTALVIEQAQRLGLKNFSVFCNHVLTPAAM 178
Query: 181 EALL-----KAGTV-FHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGIL 234
A+L +AGT+ G I P HVST+IG +A ++Y P V+AGFEP+D+L +L
Sbjct: 179 HAILATPEARAGTLQLDGFIGPAHVSTVIGSAPYAPFPQQYGTPLVIAGFEPLDLLQALL 238
Query: 235 ILIRMVKEGEAKIINEYSRVVKWEGNVKAQELINKFFEVKDA-KWRALGIIPQSGLELKR 293
+L+R + EG A++ N+++R V EGN KA+ L + FEV+++ +WR LG +P S L+++
Sbjct: 239 MLVRQLNEGRAEVENQFTRAVTAEGNRKAKALTERVFEVRESFEWRGLGAVPHSALQIRE 298
Query: 294 EWKDLEIRTLYNPDVPKLPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVSY 353
+ + + + P+ K C C AILRG P C FG CTP +P+G CMVS
Sbjct: 299 AFAEFNAERRFALE-PRTGLENKACECPAILRGAKSPRDCKLFGNPCTPDNPLGSCMVSS 357
Query: 354 EGTCSIFYKYG 364
EG C+ +Y YG
Sbjct: 358 EGACAAWYAYG 368
>sp|P31882|HYPD_AZOVI HYDROGENASE EXPRESSION/FORMATION PROTEIN HYPD >gi|95053|pir||S23443
hypothetical protein 8 - Azotobacter vinelandii
>gi|39245|emb|CAA45187.1| (X63650) ORF8 [Azotobacter
vinelandii] >gi|398011|gb|AAA19512.1| (L23970) hypD
[Azotobacter vinelandii]
Length = 379
Score = 277 bits (700), Expect = 2e-73
Identities = 146/371 (39%), Positives = 222/371 (59%), Gaps = 14/371 (3%)
Query: 2 LEKFRDKEIAQKIVRKIHKEAKGFDELRFMHVCGTHEDTVTRAGIRSLLPENVKIMSGPG 61
+++FRD A+++ +I EA + R M CG H + R GI LLP NV+++ GPG
Sbjct: 4 VDEFRDGATARQLAARIAAEADPKRQYRLMEFCGGHTHAIFRYGIPDLLPANVRLIHGPG 63
Query: 62 CPVCITPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTP-MGSFADLKSEGFDVRVV 120
CPVC+ P+ + +E+ R+ +IL T+GDM R+P S ++EG VR++
Sbjct: 64 CPVCVMPIGRLDMAIELARRP-----GVILCTYGDMLRVPASGRVSLLKARAEGAAVRML 118
Query: 121 YSIYDSYKIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLTPPAV 180
YS ++ K+AQ+N D+ VV F+ GFETTT PTA ++E GL NF ++ H LTP A+
Sbjct: 119 YSPIEALKLAQDNPDRDVVFFAIGFETTTPPTALVIEQAQRLGLKNFSVFCNHVLTPAAM 178
Query: 181 EALL-----KAGTV-FHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGIL 234
A+L +AGT+ G I P HVST+IG +A +Y P V+AGFEP+D+L +L
Sbjct: 179 HAILATPEARAGTLQLDGFIGPAHVSTVIGSDAYAPFPRQYGTPLVIAGFEPLDLLQALL 238
Query: 235 ILIRMVKEGEAKIINEYSRVVKWEGNVKAQELINKFFEVKDA-KWRALGIIPQSGLELKR 293
+L+R + EG A++ N+++R V GN+KA+ L + FE++++ +WR LG +P S L ++
Sbjct: 239 MLVRQLNEGRAEVENQFTRAVTAGGNLKAKALTGRIFELRESFEWRGLGALPNSALRIRE 298
Query: 294 EWKDLEIRTLYNPDVPKLPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVSY 353
+ + + + + + K C C AILRG P C FG C+P +P+G CMVS
Sbjct: 299 AFAEFDAERRFALEARSGLE-NKACECPAILRGAKSPRDCKLFGNPCSPDNPLGSCMVSS 357
Query: 354 EGTCSIFYKYG 364
EG C+ +Y YG
Sbjct: 358 EGACAAWYAYG 368
>pir||H81410 hydrogenase isoenzymes formation protein Cj0625 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968092|emb|CAB75261.1| (AL139075) hydrogenase
isoenzymes formation protein [Campylobacter jejuni]
Length = 363
Score = 273 bits (690), Expect = 3e-72
Identities = 146/363 (40%), Positives = 214/363 (58%), Gaps = 9/363 (2%)
Query: 2 LEKFRDKEIAQKIVRKIHKEAKGFDELRFMHVCGTHEDTVTRAGIRSLLPENVKIMSGPG 61
+++FRDKE + + I +E K + + M +CG H ++ + + S+LP+ + + GPG
Sbjct: 4 IDEFRDKESILALKKLIEQELK--NPINIMEICGGHTHSIMKYALPSILPKEINFIHGPG 61
Query: 62 CPVCITPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTPMGSFADLKSEGFDVRVVY 121
CPVC+ P VR+ ++ A + D I T GD+ R+P S DL+++G DVR +Y
Sbjct: 62 CPVCVMPR---VRIDTAIKLASMK--DTIFCTLGDLLRVPGSEISLLDLRAKGADVRALY 116
Query: 122 SIYDSYKIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLTPPAVE 181
S + +IA++N +K ++ F+ GFETTT +A +L+ VI E ++N + H P VE
Sbjct: 117 SPLEVLEIAKQNLNKNIIFFAIGFETTTPMSALLLQKVIEEKINNVFFHINHITVPAPVE 176
Query: 182 ALLKAGTV-FHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGILILIRMV 240
A++ V + + P HVS I G + L K+ P V+GFEPVD+L +L +I+
Sbjct: 177 AIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVSGFEPVDILESVLNIIKQS 236
Query: 241 KEGEAKIINEYSRVVKWEGNVKAQELINKFFEVKDAKWRALGIIPQSGLELKREWKDLEI 300
EG K+ N+Y R V EGNVKAQ L+ K+F V D ++R LG+I GLELK E+ +
Sbjct: 237 NEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRGLGLIKDGGLELKEEFSAYDA 296
Query: 301 RTLYNPDVPKLPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVSYEGTCSIF 360
++ V + K C+CG ILRGLA P C FGK CTPR PIG CMVS EG C+ +
Sbjct: 297 SKKFDCTVQSKNE-SKACICGQILRGLAKPYDCKVFGKACTPRSPIGSCMVSGEGACAAY 355
Query: 361 YKY 363
YKY
Sbjct: 356 YKY 358
>sp|P40598|HYPD_RHILV HYDROGENASE EXPRESSION/FORMATION PROTEIN HYPD
>gi|420900|pir||S32877 hypD protein - Rhizobium
leguminosarum bv. viciae >gi|48736|emb|CAA37163.1|
(X52974) hypD [Rhizobium leguminosarum]
Length = 385
Score = 272 bits (688), Expect = 5e-72
Identities = 146/372 (39%), Positives = 212/372 (56%), Gaps = 15/372 (4%)
Query: 2 LEKFRDKEIAQKIVRKIHKEAKGFDELRFMHVCGTHEDTVTRAGIRSLLPENVKIMSGPG 61
++++RD +A+ + R+I A FM CG H ++R G+ LLP NV+++ GPG
Sbjct: 4 IDEYRDGSLAKDVARQITALADPARSYHFMEFCGGHTHAISRYGLEDLLPANVRMIHGPG 63
Query: 62 CPVCITPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTPMGS-FADLKSEGFDVRVV 120
CPVC+ P+ I + + + +I L T+GD+ R+P GS K+ G D+R+V
Sbjct: 64 CPVCVLPIGRIDAAIALAMRP-----EITLCTYGDLMRVPGSNGSSLLKAKAAGADIRMV 118
Query: 121 YSIYDSYKIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLTPPAV 180
YS D+ +IA D+ VV F+ GFETTT TA L+ I GL NF I+ H LTP +
Sbjct: 119 YSTLDALRIADAEPDREVVFFAIGFETTTPTTALALKAAIARGLGNFSIFCNHVLTPAPI 178
Query: 181 EALL------KAGTV-FHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGI 233
+ +L K GT+ G I P HVST+IG + + E++ P VVAGFEP+DV+ I
Sbjct: 179 QNILESPDVRKLGTIKIDGFIGPAHVSTVIGTEPYEFFAEEFRKPVVVAGFEPLDVIQAI 238
Query: 234 LILIRMVKEGEAKIINEYSRVVKWEGNVKAQELINKFFEVKDA-KWRALGIIPQSGLELK 292
L+L+R V +G ++ N+Y R V GN KAQ + FFE++++ +WR LG +P L L+
Sbjct: 239 LMLVRQVNDGRHEVENQYIRAVTALGNEKAQAEVANFFELRESFEWRGLGEVPYGALRLR 298
Query: 293 REWKDLEIRTLYNPDVPKLPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVS 352
++ + ++ P D C CGAILRG+ P C FG CTP P+G CMVS
Sbjct: 299 PQYAAYDAEKRFSMVTPAAKD-NPACECGAILRGVKKPADCKLFGTVCTPDTPMGSCMVS 357
Query: 353 YEGTCSIFYKYG 364
EG C+ + YG
Sbjct: 358 PEGACAAHWAYG 369
>sp|P31904|HYPD_BRAJA HYDROGENASE EXPRESSION/FORMATION PROTEIN HYPD
>gi|486752|pir||S35229 hypD' protein - Bradyrhizobium
japonicum (fragment) >gi|39535|emb|CAA78988.1| (Z17373)
hypD' [Bradyrhizobium japonicum]
>gi|448282|prf||1916405A hypD gene [Bradyrhizobium
japonicum]
Length = 347
Score = 271 bits (685), Expect = 1e-71
Identities = 136/340 (40%), Positives = 206/340 (60%), Gaps = 15/340 (4%)
Query: 34 CGTHEDTVTRAGIRSLLPENVKIMSGPGCPVCITPVEDIVRMMEIMRKAKEEGEDIILTT 93
CG H ++R G+ +LP NV+++ GPGCPVC+ P I + + + DIIL
Sbjct: 3 CGGHTHAISRYGLEDMLPANVRMIHGPGCPVCVLPAGRIDMAIRLAMRP-----DIILCV 57
Query: 94 FGDMYRIPTPMG-SFADLKSEGFDVRVVYSIYDSYKIAQENRDKLVVHFSPGFETTTAPT 152
+GD+ R+P G S K+ G D+R+VYS D+ +IA++N + VV F+ GFETTT PT
Sbjct: 58 YGDLMRVPGSQGASLLKAKARGADIRMVYSTIDAIRIAEDNPGREVVFFAIGFETTTPPT 117
Query: 153 AGMLETVINEGLDNFKIYSVHRLTPPAVEALLKAGTV-------FHGLIDPGHVSTIIGV 205
A M+ + L+NF ++ H LTPPA++ +L++ + G + P HVSTIIG
Sbjct: 118 AVMIRLAGKKQLENFSVFCNHVLTPPAMQNILESPDIRNIGRVEIDGFVGPAHVSTIIGT 177
Query: 206 RGWAYLTEKYNIPQVVAGFEPVDVLLGILILIRMVKEGEAKIINEYSRVVKWEGNVKAQE 265
+ + E++ P V+AGFEP+D++ IL+L+R V E ++ N+YSR V +GN++A+E
Sbjct: 178 APYEFFAEEFGKPVVIAGFEPLDMMQAILMLVRQVNEHRHEVENQYSRAVTRDGNLRAKE 237
Query: 266 LINKFFEVKDA-KWRALGIIPQSGLELKREWKDLEIRTLYNPDVPKLPDLEKGCLCGAIL 324
++ FE++D +WR LG +P SGL+LKR + + ++ + ++ D C CGAIL
Sbjct: 238 EVSDIFELRDQFEWRGLGQVPYSGLKLKRAYAKYDAEVRFDMNELRVDD-NPACECGAIL 296
Query: 325 RGLALPPQCPHFGKTCTPRHPIGPCMVSYEGTCSIFYKYG 364
RG+ P C FG CTP P+G CMVS EG C+ + YG
Sbjct: 297 RGVKKPVDCKLFGTVCTPETPMGSCMVSSEGACAAHWTYG 336
>pir||S74470 hydrogenase isoenzymes formation protein hypD - Synechocystis sp.
(strain PCC 6803) >gi|1651694|dbj|BAA16622.1| (D90899)
hydrogenase isoenzymes formation protein HypD
[Synechocystis sp.]
Length = 374
Score = 262 bits (663), Expect = 4e-69
Identities = 140/371 (37%), Positives = 211/371 (56%), Gaps = 22/371 (5%)
Query: 2 LEKFRDKEIA----QKIVRKIHKEAKGFDELRFMHVCGTHEDTVTRAGIRSLLPENVKIM 57
++++RD + Q I R+I K M +CG ++ + G+ +LLP+N+ ++
Sbjct: 4 VDEYRDAQAVAHYRQAIAREITKP------WTLMEICGGQTHSIVKYGLDALLPKNLTLI 57
Query: 58 SGPGCPVCITPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTPMGSFADLKSEGFDV 117
GPGCPVC+TP+E I + + + ++ +II +FGDM R+P +K++G DV
Sbjct: 58 HGPGCPVCVTPMELIDQALWLAKQP-----EIIFCSFGDMLRVPGSGADLLSIKAQGGDV 112
Query: 118 RVVYSIYDSYKIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLTP 177
R+VYS D IA+EN ++ VV F GFETT TA L +G+ NF + H L P
Sbjct: 113 RIVYSPLDCLAIARENPNREVVFFGVGFETTAPATAMTLHQARAQGISNFSLLCAHVLVP 172
Query: 178 PAVEALL-KAGTVFHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGILIL 236
PA+EALL ++ G + GHV T+ G R + ++ EKY +P V+ GFEPVD++ GI
Sbjct: 173 PAMEALLGNPNSLVQGFLAAGHVCTVTGERAYQHIAEKYQVPIVITGFEPVDIMQGIFAC 232
Query: 237 IRMVKEGEAKIINEYSRVVKWEGNVKAQELINKFFEVKDAKWRALGIIPQSGLELKREWK 296
+R ++ G+ N+Y R V+ +GN AQ++I++ FE D WR LG+IP SGL L+ +
Sbjct: 233 VRQLESGQFTCNNQYRRSVQPQGNAHAQKIIDQVFEPVDRHWRGLGLIPASGLGLRPAFA 292
Query: 297 D----LEIRTLYNPDVPKLPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVS 352
++ L P + E C+ G IL+G P CP FG CTP P+G MVS
Sbjct: 293 PWDAAVKFANLLQTMAPTMG--ETVCISGEILQGQRKPSDCPAFGTICTPEQPLGAPMVS 350
Query: 353 YEGTCSIFYKY 363
EG C+ +Y+Y
Sbjct: 351 SEGACAAYYRY 361
>pir||B64632 hydrogenase expression/formation protein - Helicobacter pylori
(strain 26695) >gi|2314033|gb|AAD07944.1| (AE000599)
hydrogenase expression/formation protein (hypD)
[Helicobacter pylori 26695]
Length = 370
Score = 261 bits (661), Expect = 7e-69
Identities = 141/367 (38%), Positives = 212/367 (57%), Gaps = 9/367 (2%)
Query: 1 MLEKFRDKEIAQKIVRKIHKEAKGFDE-LRFMHVCGTHEDTVTRAGIRSLLPENVKIMSG 59
++ FRDK + I K A ++ L M VCG H ++ + G+ L+P N++ + G
Sbjct: 6 LISPFRDKRTLLALSNAIKKLAFKLEKKLVIMEVCGGHTHSIMKYGLLDLMPNNLEFVHG 65
Query: 60 PGCPVCITPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTPMGSFADLKSEGFDVRV 119
PGCPVC+ P + E+ +D I+ + GDM R+P GS + +G D R
Sbjct: 66 PGCPVCVMPRARLDEAYELATI-----KDSIVLSLGDMMRVPGSYGSLIQAREKGLDARF 120
Query: 120 VYSIYDSYKIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLTPPA 179
+YS + +IA+EN K V++ + GFETTT +A +L + E ++N + H L PP+
Sbjct: 121 LYSPMQALEIAKENPTKKVIYIAIGFETTTPMSASVLWSAKKEKINNLFFHINHILVPPS 180
Query: 180 VEALLK-AGTVFHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGILILIR 238
V A+LK + L+ P HVS I G + +A L +++ IP +V+GFEPVD+L +L+LI+
Sbjct: 181 VSAILKDPACQINALLAPSHVSVISGAQIYAPLVDRFKIPIIVSGFEPVDILESVLMLIK 240
Query: 239 MVKEGEAKIINEYSRVVKWEGNVKAQELINKFFEVKD-AKWRALGIIPQSGLELKREWKD 297
EAK+ +Y R V +EGNVKAQEL+N EV++ +WR LG I +S L+LK +
Sbjct: 241 QALNKEAKLEIQYKRAVSFEGNVKAQELVNACMEVRENFEWRGLGNIKRSALKLKEAFAS 300
Query: 298 LEIRTLYNPDVP-KLPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVSYEGT 356
+ ++ + K K C CG IL+G+A P C F TCTP++PIG CMVS EG
Sbjct: 301 YDAEEVFKEYLSHKTSKENKACKCGEILKGIAKPLDCSLFATTCTPQNPIGSCMVSSEGA 360
Query: 357 CSIFYKY 363
C+ +Y+Y
Sbjct: 361 CAAYYRY 367
>pir||F71883 hydrogenase expression/formation protein - Helicobacter pylori
(strain J99) >gi|4155404|gb|AAD06413.1| (AE001512)
Hydrogenase expression/formation protein [Helicobacter
pylori J99]
Length = 370
Score = 259 bits (654), Expect = 5e-68
Identities = 140/367 (38%), Positives = 209/367 (56%), Gaps = 9/367 (2%)
Query: 1 MLEKFRDKEIAQKIVRKIHKEA-KGFDELRFMHVCGTHEDTVTRAGIRSLLPENVKIMSG 59
++ FRDK I + +I K A K +L M VCG H ++ + G+ L+P+N++ G
Sbjct: 6 LISPFRDKRIILALSNEIKKFASKLTKKLVIMEVCGGHTHSIMKYGLLDLMPKNLEFAHG 65
Query: 60 PGCPVCITPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTPMGSFADLKSEGFDVRV 119
PGCPVC+ P + E+ +D I+ + GDM R+P GS + +G D R
Sbjct: 66 PGCPVCVMPRARLDEAYELASM-----KDSIVLSLGDMMRVPGSYGSLIQAREKGLDARF 120
Query: 120 VYSIYDSYKIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLTPPA 179
+YS + +IA+EN K V++ + GFETTT TA +L E L N + H L PP+
Sbjct: 121 LYSPMQALEIAKENPHKKVIYIAIGFETTTPMTASVLLNAKKEKLKNLFFHINHILVPPS 180
Query: 180 VEALLKAGTV-FHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGILILIR 238
V +L+ + L+ P HVS I G + +A L +++ +P +V+GFEPVD+L +L+L +
Sbjct: 181 VSTILEDKACRINALLAPSHVSVISGAQIYAPLVDRFKLPIIVSGFEPVDILESVLMLTK 240
Query: 239 MVKEGEAKIINEYSRVVKWEGNVKAQELINKFFEVKD-AKWRALGIIPQSGLELKREWKD 297
EAK+ +Y R V +EGN KAQEL+N EV++ +WR LG I +S L+LK +
Sbjct: 241 QALNKEAKLEIQYKRAVSYEGNTKAQELVNACMEVRENFEWRGLGNIKRSALKLKEAFAS 300
Query: 298 LEIRTLYNPDVP-KLPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVSYEGT 356
+ ++ + K K C CG IL+G+A P C F TCTP++PIG CMVS EG
Sbjct: 301 YDAEKVFKAYLSHKTSKENKACKCGEILKGIAKPLDCSLFATTCTPQNPIGSCMVSSEGA 360
Query: 357 CSIFYKY 363
C+ +Y+Y
Sbjct: 361 CAAYYRY 367
>gb|AAA69239.1| (U29579) CG Site no. 33116; ORF_o373 [Escherichia coli]
Length = 373
Score = 243 bits (614), Expect = 2e-63
Identities = 133/369 (36%), Positives = 200/369 (54%), Gaps = 13/369 (3%)
Query: 2 LEKFRDKEIAQKIVRKIHKEAKGFD-----ELRFMHVCGTHEDTVTRAGIRSLLPENVKI 56
++++R E +++ + + A LR M VCG H + + G+ LLPENV+
Sbjct: 4 VDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEF 63
Query: 57 MSGPGCPVCITPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTPMGSFADLKSEGFD 116
+ GPGCPVC+ P+ I +EI ++I TFGD R+P GS K+ G D
Sbjct: 64 IHGPGCPVCVLPMGRIDTCVEIASHP-----EVIFCTFGDAMRVPGKQGSLLQAKARGAD 118
Query: 117 VRVVYSIYDSYKIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLT 176
VR+VYS D+ K+AQEN + VV F GFETT TA L+ + NF + H
Sbjct: 119 VRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITL 178
Query: 177 PPAVEALL-KAGTVFHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGILI 235
P + +LL + + PGHVS +IG + ++ ++ P VVAGFEP+D+L G+++
Sbjct: 179 IPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVM 238
Query: 236 LIRMVKEGEAKIINEYSRVVKWEGNVKAQELINKFFEVK-DAKWRALGIIPQSGLELKRE 294
L++ +K+ N+Y RVV GN+ AQ+ I F V D++WR LG+I SG+ L +
Sbjct: 239 LVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIXDVFCVNGDSEWRGLGVIESSGVHLTPD 298
Query: 295 WKDLEIRTLYNPDVPKLPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVSYE 354
++ + + P ++ D + CG +L G P QCP FG TC P+ G MVS E
Sbjct: 299 YQRFDAEAHFRPAPQQVCD-DPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSE 357
Query: 355 GTCSIFYKY 363
G C+ +Y+Y
Sbjct: 358 GACAAWYQY 366
>sp|P24192|HYPD_ECOLI HYDROGENASE ISOENZYMES FORMATION PROTEIN HYPD >gi|95944|pir||S15200
hydrogenase expression/formation protein HypD -
Escherichia coli >gi|41778|emb|CAA38415.1| (X54543)
hydrogenase isoenzyme hypD [Escherichia coli]
>gi|1789084|gb|AAC75771.1| (AE000356) pleiotrophic
effects on 3 hydrogenase isozymes [Escherichia coli K12]
Length = 373
Score = 243 bits (613), Expect = 3e-63
Identities = 133/369 (36%), Positives = 200/369 (54%), Gaps = 13/369 (3%)
Query: 2 LEKFRDKEIAQKIVRKIHKEAKGFD-----ELRFMHVCGTHEDTVTRAGIRSLLPENVKI 56
++++R E +++ + + A LR M VCG H + + G+ LLPENV+
Sbjct: 4 VDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEF 63
Query: 57 MSGPGCPVCITPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTPMGSFADLKSEGFD 116
+ GPGCPVC+ P+ I +EI ++I TFGD R+P GS K+ G D
Sbjct: 64 IHGPGCPVCVLPMGRIDTCVEIASHP-----EVIFCTFGDAMRVPGKQGSLLQAKARGAD 118
Query: 117 VRVVYSIYDSYKIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLT 176
VR+VYS D+ K+AQEN + VV F GFETT TA L+ + NF + H
Sbjct: 119 VRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITL 178
Query: 177 PPAVEALL-KAGTVFHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGILI 235
P + +LL + + PGHVS +IG + ++ ++ P VVAGFEP+D+L G+++
Sbjct: 179 IPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVM 238
Query: 236 LIRMVKEGEAKIINEYSRVVKWEGNVKAQELINKFFEVK-DAKWRALGIIPQSGLELKRE 294
L++ +K+ N+Y RVV GN+ AQ+ I F V D++WR LG+I SG+ L +
Sbjct: 239 LVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPD 298
Query: 295 WKDLEIRTLYNPDVPKLPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVSYE 354
++ + + P ++ D + CG +L G P QCP FG TC P+ G MVS E
Sbjct: 299 YQRFDAEAHFRPAPQQVCD-DPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSE 357
Query: 355 GTCSIFYKY 363
G C+ +Y+Y
Sbjct: 358 GACAAWYQY 366
>pir||S59984 hypD protein - Rhodobacter capsulatus >gi|46055|emb|CAA43328.1|
(X61007) HypD [Rhodobacter capsulatus]
Length = 473
Score = 236 bits (597), Expect = 2e-61
Identities = 129/371 (34%), Positives = 200/371 (53%), Gaps = 15/371 (4%)
Query: 4 KFRDKEIAQKIVRKIHKEAKGFDE-----LRFMHVCGTHEDTVTRAGIRSLLPENVKIMS 58
+FRD +A+ ++ +I + A + M +CG H ++ R G+ L+ ++ +
Sbjct: 102 EFRDPALAKGLLAEIARLADQIGATAEKPVHIMEICGGHTHSIFRYGLDKLIHPGIEFIH 161
Query: 59 GPGCPVCITPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTPMGSFADLKSEGFDVR 118
GPGCPVC+ P + +EI + ++I TFGD R+P S K+ G D+R
Sbjct: 162 GPGCPVCVLPRARVDECIEIAGRP-----EVIFCTFGDAMRVPGSKLSLMQAKAAGADIR 216
Query: 119 VVYSIYDSYKIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLTPP 178
+VYS D+ ++A+ N + VV F GFETTT TA ++ EGL NF ++ H P
Sbjct: 217 MVYSPLDALELARRNPGREVVFFGLGFETTTPSTALAIQQAAREGLANFSVFCNHITVPE 276
Query: 179 AVEALLKAGTV-FHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGILILI 237
+ ALL + G I PGHVS +IG+ + ++ E Y P VVAGFEP D+L +L+++
Sbjct: 277 PIRALLDDPYMRLDGFIGPGHVSMVIGIHPYDFIAEDYGKPLVVAGFEPTDLLQSVLMVL 336
Query: 238 RMVKEGEAKIINEYSRVVKWEGNVKAQELINKFFEVKDA-KWRALGIIPQSGLELKREWK 296
R + +G A I N+Y+RVV GN + I +E + + +WR LG I SGL ++ ++
Sbjct: 337 RQISQGRAAIENQYARVVPEHGNRVSLAAIADVYERRPSFEWRGLGEIDASGLRIRAAYR 396
Query: 297 DLEIRTLYNPDVP---KLPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVSY 353
+ + + +GC CGA++ G P C FGK CTP P+G MVS
Sbjct: 397 AHDAEEKFGVGYAGQRAAVEEAEGCACGAVMTGRMKPVACAQFGKGCTPEMPLGALMVSS 456
Query: 354 EGTCSIFYKYG 364
EG C+ +++YG
Sbjct: 457 EGACAAYWQYG 467
>sp|P26411|HYPD_RHOCA HYDROGENASE EXPRESSION/FORMATION PROTEIN HYPD
>gi|2126467|pir||S59985 hypD protein - Rhodobacter
capsulatus
Length = 377
Score = 236 bits (597), Expect = 2e-61
Identities = 129/371 (34%), Positives = 200/371 (53%), Gaps = 15/371 (4%)
Query: 4 KFRDKEIAQKIVRKIHKEAKGFDE-----LRFMHVCGTHEDTVTRAGIRSLLPENVKIMS 58
+FRD +A+ ++ +I + A + M +CG H ++ R G+ L+ ++ +
Sbjct: 6 EFRDPALAKGLLAEIARLADQIGATAEKPVHIMEICGGHTHSIFRYGLDKLIHPGIEFIH 65
Query: 59 GPGCPVCITPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTPMGSFADLKSEGFDVR 118
GPGCPVC+ P + +EI + ++I TFGD R+P S K+ G D+R
Sbjct: 66 GPGCPVCVLPRARVDECIEIAGRP-----EVIFCTFGDAMRVPGSKLSLMQAKAAGADIR 120
Query: 119 VVYSIYDSYKIAQENRDKLVVHFSPGFETTTAPTAGMLETVINEGLDNFKIYSVHRLTPP 178
+VYS D+ ++A+ N + VV F GFETTT TA ++ EGL NF ++ H P
Sbjct: 121 MVYSPLDALELARRNPGREVVFFGLGFETTTPSTALAIQQAAREGLANFSVFCNHITVPE 180
Query: 179 AVEALLKAGTV-FHGLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGILILI 237
+ ALL + G I PGHVS +IG+ + ++ E Y P VVAGFEP D+L +L+++
Sbjct: 181 PIRALLDDPYMRLDGFIGPGHVSMVIGIHPYDFIAEDYGKPLVVAGFEPTDLLQSVLMVL 240
Query: 238 RMVKEGEAKIINEYSRVVKWEGNVKAQELINKFFEVKDA-KWRALGIIPQSGLELKREWK 296
R + +G A I N+Y+RVV GN + I +E + + +WR LG I SGL ++ ++
Sbjct: 241 RQISQGRAAIENQYARVVPEHGNRVSLAAIADVYERRPSFEWRGLGEIDASGLRIRAAYR 300
Query: 297 DLEIRTLYNPDVP---KLPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVSY 353
+ + + +GC CGA++ G P C FGK CTP P+G MVS
Sbjct: 301 AHDAEEKFGVGYAGQRAAVEEAEGCACGAVMTGRMKPVACAQFGKGCTPEMPLGALMVSS 360
Query: 354 EGTCSIFYKYG 364
EG C+ +++YG
Sbjct: 361 EGACAAYWQYG 371
>gb|AAB64435.1| (AF006594) HupD [Anabaena PCC7120]
Length = 199
Score = 146 bits (365), Expect = 4e-34
Identities = 71/174 (40%), Positives = 106/174 (60%), Gaps = 2/174 (1%)
Query: 192 GLIDPGHVSTIIGVRGWAYLTEKYNIPQVVAGFEPVDVLLGILILIRMVKEGEAKIINEY 251
G I PGHVS +IG + ++ ++Y+ P VV+GFEP+D+ I +L++ + E ++ N+Y
Sbjct: 7 GFIGPGHVSMVIGTEPYEFIAQQYHKPIVVSGFEPLDIFQSIWMLLQQLVENRCEVENQY 66
Query: 252 SRVVKWEGNVKAQELINKFFEVKDA-KWRALGIIPQSGLELKREWKDLEIRTLYNPDVPK 310
+R+V+ GN A ++K F V++ WR L IP SGL+++ E+ + + K
Sbjct: 67 NRLVQKGGNQIALAAMHKVFAVREKFAWRGLDEIPDSGLKIREEYAQFDAELKFTIPNLK 126
Query: 311 LPDLEKGCLCGAILRGLALPPQCPHFGKTCTPRHPIGPCMVSYEGTCSIFYKYG 364
+ D K C CG IL+G+ P QC FG CTP PIG CMVS EG C+ +YKYG
Sbjct: 127 VAD-HKACKCGEILKGVPQPWQCKVFGTACTPETPIGTCMVSSEGACAAYYKYG 179
>gb|AAF20001.1|AF214145_8 (AF214145) hydrogenase maturating protein HypD [Rhodobacter
sphaeroides]
Length = 123
Score = 69.5 bits (167), Expect = 6e-11
Identities = 38/123 (30%), Positives = 60/123 (47%), Gaps = 10/123 (8%)
Query: 4 KFRDKEIAQKIVRKIHKEAKGFDELR-----FMHVCGTHEDTVTRAGIRSLLPENVKIMS 58
+FRD +A+ ++ I A R M +CG H + R G+ L+ E ++ +
Sbjct: 6 EFRDPALARSLLAAIAARADEMGATRARPLHIMEICGGHTHAIFRYGLDRLVHEGIEFIH 65
Query: 59 GPGCPVCITPVEDIVRMMEIMRKAKEEGEDIILTTFGDMYRIPTPMGSFADLKSEGFDVR 118
GPGCPVC+ P+ + + + I +ILTTF +P GS K+ G D+R
Sbjct: 66 GPGCPVCVLPIPPLHQSIPI-----PHPPHLILTTFPHPIPLPGARGSLLQAKARGADIR 120
Query: 119 VVY 121
+VY
Sbjct: 121 MVY 123
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.142 0.433
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146479878
Number of Sequences: 2977
Number of extensions: 6442854
Number of successful extensions: 12846
Number of sequences better than 1.0e-10: 21
Number of HSP's better than 0.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12754
Number of HSP's gapped (non-prelim): 21
length of query: 367
length of database: 189,106,746
effective HSP length: 52
effective length of query: 315
effective length of database: 157,985,422
effective search space: 49765407930
effective search space used: 49765407930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)