BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1560 (hypF) DE:hydrogenase expression/formation regulatory
protein (hypF)
(773 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75031 hydrogenase expression/formation regulatory protein ... 1571 0.0
pir||A71079 probable transcription regulatory protein hypF - Pyr... 1469 0.0
sp|Q58123|Y713_METJA PUTATIVE HYDROGENASE EXPRESSION/FORMATION P... 680 0.0
pir||C69038 transcription regulator HypF homolog - Methanobacter... 624 e-177
gi|11498962 hydrogenase expression/formation regulatory protein ... 573 e-162
pir||T45111 hypF protein [imported] - Methanosarcina mazei (frag... 566 e-160
pir||B70359 transcription regulator HypF - Aquifex aeolicus >gi|... 558 e-158
sp|O07451|HYF2_ALCEU HYDROGENASE MATURATION PROTEIN HYPF2 >gi|21... 467 e-130
sp|P40596|HYPF_AZOVI HYDROGENASE MATURATION PROTEIN HYPF 457 e-127
sp|Q43950|HYPF_AZOCH HYDROGENASE MATURATION PROTEIN HYPF 447 e-124
pir||S23441 hypothetical protein 6 - Azotobacter vinelandii >gi|... 446 e-124
sp|P28156|HYPF_RHILV HYDROGENASE MATURATION PROTEIN HYPF >gi|420... 440 e-122
sp|Q55638|HYPF_SYNY3 HYDROGENASE MATURATION PROTEIN HYPF >gi|744... 437 e-121
pir||JN0648 hydrogenase expression/formation protein HupY - Azot... 436 e-121
pir||E81410 transcription regulatory protein hypF Cj0622 [import... 433 e-120
sp|P30131|HYPF_ECOLI HYDROGENASE MATURATION PROTEIN HYPF >gi|744... 428 e-119
gb|AAA69222.1| (U29579) CG Site No. 18232; alternate gene name h... 428 e-118
sp|Q02987|HYPF_RHOCA HYDROGENASE MATURATION PROTEIN HYPF >gi|479... 418 e-116
dbj|BAA03315.1| (D14422) HYDA [Escherichia coli] 410 e-113
emb|CAB39912.1| (Y14197) uptake hydrogenase [Rhodobacter sphaero... 401 e-110
pir||H64525 transcription regulator - Helicobacter pylori (strai... 371 e-101
pir||G71981 probable transcription regulator - Helicobacter pylo... 360 4e-98
emb|CAA85443.1| (Z36981) HYPF [Rhizobium leguminosarum] 343 5e-93
sp|P45805|HYF1_ALCEU HYDROGENASE MATURATION PROTEIN HYPF1 >gi|21... 163 6e-39
>pir||D75031 hydrogenase expression/formation regulatory protein (hypf) PAB1560
- Pyrococcus abyssi (strain Orsay)
>gi|5458658|emb|CAB50145.1| (AJ248287) hydrogenase
expression/formation regulatory protein (hypF)
[Pyrococcus abyssi]
Length = 773
Score = 1571 bits (4023), Expect = 0.0
Identities = 773/773 (100%), Positives = 773/773 (100%)
Query: 1 MKAYRIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDL 60
MKAYRIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDL
Sbjct: 1 MKAYRIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDL 60
Query: 61 YRKKPPIAKIEKVEREEIPIQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDP 120
YRKKPPIAKIEKVEREEIPIQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDP
Sbjct: 61 YRKKPPIAKIEKVEREEIPIQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDP 120
Query: 121 TNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPV 180
TNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPV
Sbjct: 121 TNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPV 180
Query: 181 ACPVCGPSYRLYTSDGKEITGDPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAEL 240
ACPVCGPSYRLYTSDGKEITGDPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAEL
Sbjct: 181 ACPVCGPSYRLYTSDGKEITGDPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAEL 240
Query: 241 RKRLFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPENLAPG 300
RKRLFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPENLAPG
Sbjct: 241 RKRLFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPENLAPG 300
Query: 301 LHTIGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFEKLKDVADYLLLHN 360
LHTIGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFEKLKDVADYLLLHN
Sbjct: 301 LHTIGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFEKLKDVADYLLLHN 360
Query: 361 RRIPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEYKGLAVGAELMNAFGVAKNGKV 420
RRIPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEYKGLAVGAELMNAFGVAKNGKV
Sbjct: 361 RRIPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEYKGLAVGAELMNAFGVAKNGKV 420
Query: 421 YPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLAMEIAEEFNA 480
YPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLAMEIAEEFNA
Sbjct: 421 YPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLAMEIAEEFNA 480
Query: 481 EFLQVQHHYAHVASVMAEHNLEEVVGIALDGVGYGTDGKTWGGEIIYLSYEDIERLAHLE 540
EFLQVQHHYAHVASVMAEHNLEEVVGIALDGVGYGTDGKTWGGEIIYLSYEDIERLAHLE
Sbjct: 481 EFLQVQHHYAHVASVMAEHNLEEVVGIALDGVGYGTDGKTWGGEIIYLSYEDIERLAHLE 540
Query: 541 YYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCPNAIKSLKYGETELKVILRQL 600
YYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCPNAIKSLKYGETELKVILRQL
Sbjct: 541 YYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCPNAIKSLKYGETELKVILRQL 600
Query: 601 SSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLESFASQGKNDLKLTIPVEGEE 660
SSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLESFASQGKNDLKLTIPVEGEE
Sbjct: 601 SSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLESFASQGKNDLKLTIPVEGEE 660
Query: 661 IRVSELFEEVLDLMGKASPRDIAYSIHLALARVFAEVSVEKAKEFGAKTVVLGGGVGYNE 720
IRVSELFEEVLDLMGKASPRDIAYSIHLALARVFAEVSVEKAKEFGAKTVVLGGGVGYNE
Sbjct: 661 IRVSELFEEVLDLMGKASPRDIAYSIHLALARVFAEVSVEKAKEFGAKTVVLGGGVGYNE 720
Query: 721 LIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQAFLGGLYLEGYLNREDLSI 773
LIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQAFLGGLYLEGYLNREDLSI
Sbjct: 721 LIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQAFLGGLYLEGYLNREDLSI 773
>pir||A71079 probable transcription regulatory protein hypF - Pyrococcus
horikoshii >gi|3257308|dbj|BAA29991.1| (AP000004) 773aa
long hypothetical transcriptional regulatory protein
hypF [Pyrococcus horikoshii]
Length = 773
Score = 1469 bits (3762), Expect = 0.0
Identities = 706/773 (91%), Positives = 748/773 (96%)
Query: 1 MKAYRIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDL 60
MKAYRIHVQGIVQAVGFRPFVYRIAHAHNL+G+VRNLGDAGVEIV+EG EEDIEGFL DL
Sbjct: 1 MKAYRIHVQGIVQAVGFRPFVYRIAHAHNLKGFVRNLGDAGVEIVIEGNEEDIEGFLVDL 60
Query: 61 YRKKPPIAKIEKVEREEIPIQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDP 120
Y+KKPPIA+I+KVE+EEIP QGFDRFYIEKSSTEKKGEGDSIIPPDIAIC+DCL+ELFDP
Sbjct: 61 YKKKPPIARIDKVEKEEIPPQGFDRFYIEKSSTEKKGEGDSIIPPDIAICDDCLKELFDP 120
Query: 121 TNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPV 180
TNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMC+FC+SEYEDPLNRRYHAEPV
Sbjct: 121 TNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCEFCRSEYEDPLNRRYHAEPV 180
Query: 181 ACPVCGPSYRLYTSDGKEITGDPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAEL 240
ACP CGPSYRLYT+DG EI GDPLRKAAKLIDKGYI+AIKGIGGIHLACDATREDVV EL
Sbjct: 181 ACPTCGPSYRLYTNDGNEIVGDPLRKAAKLIDKGYIVAIKGIGGIHLACDATREDVVVEL 240
Query: 241 RKRLFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPENLAPG 300
RKR+FRPQKPFAIMAKDLET++ FAY+S EEEEELTSYRRPIVAL+K+EPFPLPENLAPG
Sbjct: 241 RKRIFRPQKPFAIMAKDLETIRTFAYVSPEEEEELTSYRRPIVALKKKEPFPLPENLAPG 300
Query: 301 LHTIGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFEKLKDVADYLLLHN 360
LHTIGVMLPYAGTHYILFHWS+TPVYVMTSANFPGMPMIKDNEEAFEKL+DVADYLLLHN
Sbjct: 301 LHTIGVMLPYAGTHYILFHWSETPVYVMTSANFPGMPMIKDNEEAFEKLRDVADYLLLHN 360
Query: 361 RRIPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEYKGLAVGAELMNAFGVAKNGKV 420
RRIPNRADDSVVRFVDGRRAVIRRSRGFVPL IEIPFEYKGLAVGA LMNAFGV+K+GKV
Sbjct: 361 RRIPNRADDSVVRFVDGRRAVIRRSRGFVPLGIEIPFEYKGLAVGAGLMNAFGVSKSGKV 420
Query: 421 YPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLAMEIAEEFNA 480
YPSQYIG+TSKIEVLEFMR+AI+HFFKILRI++LDLVVADLHP+YNTTKL MEIAEEF A
Sbjct: 421 YPSQYIGDTSKIEVLEFMRDAIRHFFKILRIDSLDLVVADLHPSYNTTKLGMEIAEEFGA 480
Query: 481 EFLQVQHHYAHVASVMAEHNLEEVVGIALDGVGYGTDGKTWGGEIIYLSYEDIERLAHLE 540
EFLQVQHHYAHVASVMAEHNLEEVVGIALDGVGYGTDGKTWGGE+IYL YED+ERLAH+E
Sbjct: 481 EFLQVQHHYAHVASVMAEHNLEEVVGIALDGVGYGTDGKTWGGEVIYLGYEDVERLAHIE 540
Query: 541 YYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCPNAIKSLKYGETELKVILRQL 600
YYPLPGGDLASYYPLRALIGILSLNH+ EEVE IR+FCPNAIKSLKYGETE KVILRQL
Sbjct: 541 YYPLPGGDLASYYPLRALIGILSLNHDFEEVEKIIREFCPNAIKSLKYGETEFKVILRQL 600
Query: 601 SSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLESFASQGKNDLKLTIPVEGEE 660
SSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLESFA QGKNDL LT+P+EGEE
Sbjct: 601 SSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLESFAYQGKNDLNLTVPIEGEE 660
Query: 661 IRVSELFEEVLDLMGKASPRDIAYSIHLALARVFAEVSVEKAKEFGAKTVVLGGGVGYNE 720
I+VSELFEEVL+LMGK +PRDIAYS+HLALAR FAEVSVEKAKEFG KTVVLGGGVGYNE
Sbjct: 661 IKVSELFEEVLELMGKVNPRDIAYSVHLALARAFAEVSVEKAKEFGVKTVVLGGGVGYNE 720
Query: 721 LIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQAFLGGLYLEGYLNREDLSI 773
LIVKT+RKIVEG L+FLTTYEVPRGDNGINVGQAFLGGLYLEGYLNREDLSI
Sbjct: 721 LIVKTIRKIVEGRELRFLTTYEVPRGDNGINVGQAFLGGLYLEGYLNREDLSI 773
>sp|Q58123|Y713_METJA PUTATIVE HYDROGENASE EXPRESSION/FORMATION PROTEIN MJ0713
>gi|2127975|pir||A64389 hydrogenase accessory protein -
Methanococcus jannaschii >gi|1591430|gb|AAB98708.1|
(U67518) hydrogenase expression regulatory protein
(hypF) [Methanococcus jannaschii]
Length = 766
Score = 680 bits (1735), Expect = 0.0
Identities = 351/759 (46%), Positives = 499/759 (65%), Gaps = 24/759 (3%)
Query: 5 RIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDLYRKK 64
RI V+GIVQ VGFRPFVYRIA +NL+GYV+N+G+ VEI++EG++EDI F+ DL KK
Sbjct: 13 RIKVKGIVQGVGFRPFVYRIAKKNNLKGYVKNMGNY-VEILIEGKKEDIRNFINDLKNKK 71
Query: 65 PPIAKIEKVEREEIP-IQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDPTNK 123
PP+++I+K++ EEI I+ FD FYI KS K E + IP D+AIC+DCL+E+ D ++
Sbjct: 72 PPLSRIDKLDIEEIKGIEEFDDFYIIKSENAKDEE-EGTIPADVAICDDCLKEMLDKNDR 130
Query: 124 RYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPVACP 183
RY YPFI CTNCGPRFTI+E LPYDRENT+MR+FP+C+ C EY++PL+RR+HA+ CP
Sbjct: 131 RYRYPFIACTNCGPRFTIVEKLPYDRENTSMRDFPLCEKCLEEYKNPLDRRFHAQATCCP 190
Query: 184 VCGPSYRLYTSDGKEITG---DPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAEL 240
+CGP +++ SDGKEI + +R+ KL+++G+I+AIKGIGG HLAC +DVV EL
Sbjct: 191 ICGP--KVFLSDGKEIIAEKDEAIRETVKLLEEGHILAIKGIGGTHLACKVGEDDVVLEL 248
Query: 241 RKRLFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPF-PLPENLAP 299
RKRL RP +PFA+M+K +E + FA +E+ L S RRPIV L+K + +
Sbjct: 249 RKRLGRPTQPFAVMSK-IEYTELFAEFDEDEKNALLSLRRPIVVLKKSQDYDKYFSKYVS 307
Query: 300 GLHTIGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFEKLKDVADYLLLH 359
L TIGVM PY+G HY+LF K YVMTSAN PG+PM+KDN+E +KL +ADY LLH
Sbjct: 308 NLDTIGVMFPYSGLHYLLF--DKEIAYVMTSANLPGLPMVKDNDEILKKLNGIADYFLLH 365
Query: 360 NRRIPNRADDSVVRFVDGRRAVIRRSRGFV--PLWIEIPFEYKGLAVGAELMNAFGVAKN 417
NRRI NR DDSVV+ V R +RRSRGF P+ + I L VGAEL + + K
Sbjct: 366 NRRIVNRCDDSVVKKVADRLVFLRRSRGFAPEPVKVNINNNKNILCVGAELNSTACIVKR 425
Query: 418 GKVYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLAMEIAEE 477
K Y +QYIGNTSK E ++R+AI + ++ N +D +V DLHP +N+TKLA E++E+
Sbjct: 426 DKFYLTQYIGNTSKYETFCYLRDAINNILRLTNTNKIDAIVCDLHPQFNSTKLAEELSEK 485
Query: 478 FNAEFLQVQHHYAHVASVMAEHN-LEEVVGIALDGVGYGTDGKTWGGEIIYLSYEDIERL 536
F AE +VQHH+AH S++ ++N ++ + ++LDGVGYG DG WGGE++ +ER+
Sbjct: 486 FGAEIFRVQHHFAHAYSLLGDNNYFDDAIILSLDGVGYGLDGNIWGGEVLLFKDGKMERV 545
Query: 537 AHLEYYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCPNAIKSLKYGETELKVI 596
HLE GGDLA+ YPLR L+ IL EE + I+++ + E EL+++
Sbjct: 546 GHLEEQYQLGGDLATKYPLRMLLSIL-YKAIGEEAFDFIKRY-------NFFSEKELRLL 597
Query: 597 LRQLSSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLESFASQGKNDLKLTIPV 656
QL +N +STGRVLDA S LL + + + Y+GEP+++LE A++ K D+ + +
Sbjct: 598 KFQLEKKLNCPITTSTGRVLDAVSALLGICFEKTYDGEPSIRLEPVANRFKGDINIEPKI 657
Query: 657 EGEEIRVSELFEEVLD-LMGKASPRDIAYSIHLALARVFAEVSVEKAKEFGAKTVVLGGG 715
+ + +EL + + L+ + IA+ H+ +A E++ + + +FG T+ + GG
Sbjct: 658 KNNILNTTELIYKSYEMLLNNENKEKIAHFAHIYIADGLFEIAKKISNKFGINTIGITGG 717
Query: 716 VGYNELIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQ 754
V YN++I + + + G F+ VP GD GI+ GQ
Sbjct: 718 VSYNKIITERIMNNAKREGFNFIYHQRVPNGDGGISFGQ 756
>pir||C69038 transcription regulator HypF homolog - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622395|gb|AAB85769.1| (AE000894) transcriptional
regulator HypF homolog [Methanobacterium
thermoautotrophicum]
Length = 729
Score = 624 bits (1592), Expect = e-177
Identities = 332/726 (45%), Positives = 455/726 (61%), Gaps = 21/726 (2%)
Query: 42 VEIVVEGREEDIEGFLRDLYRKKPPIAKIEKVERE--EIPIQGFDRFYIEKSSTEKKGEG 99
VEIV+EG E IE F+ L + KPPI++I ++++ E+ F F I++SS+ G
Sbjct: 5 VEIVLEGSHEGIEEFIERLKKDKPPISRINSIKKDIFEVNEASFTEFIIKESSSSSSGT- 63
Query: 100 DSIIPPDIAICEDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPM 159
S+IP D+A C CL E+ D N+RY+YPF CT+CGPRFT+IE +PYDRE T+MR+FP+
Sbjct: 64 -SVIPADVATCSSCLEEMMDENNRRYLYPFTACTDCGPRFTVIESIPYDRERTSMRDFPL 122
Query: 160 CDFCKSEYEDPLNRRYHAEPVACPVCGPSYRLYTSDGKEITGDPLRKAAKLIDKGYIIAI 219
C C EY +PL+RRYHAE CP+CGP LY DG T DP++ AA+L+D G I+A+
Sbjct: 123 CSSCMEEYLNPLDRRYHAEATCCPICGPKPFLYR-DGILKTHDPIKMAAELLDDGSILAV 181
Query: 220 KGIGGIHLACDATREDVVAELRKRLFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYR 279
KGIGG HL C A ++VV LR L RP +PFA M+ DLE+++ +A IS EEE LTS R
Sbjct: 182 KGIGGTHLVCRADDDEVVKRLRSGLGRPNQPFACMSPDLESIESYASISDVEEEALTSRR 241
Query: 280 RPIVALRKREPFPLPENLAPGLHTIGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMI 339
RPIV L+K + L ++APGLH IGVMLPY+G H++L +++ P YVMTSAN PG PM
Sbjct: 242 RPIVVLKKSRDYCLAPSVAPGLHNIGVMLPYSGLHHVLLRYTEAPAYVMTSANRPGDPMF 301
Query: 340 KDNEEAFEKLKDVADYLLLHNRRIPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPF-- 397
+N E L+ +ADY LLH+RRI NR DDSVVRF G A IRRSRG+ P EIP
Sbjct: 302 IENTEIIGGLQGIADYFLLHDRRIVNRCDDSVVRFRGGEMAFIRRSRGYAPEPYEIPHVA 361
Query: 398 -EYKGLAVGAELMNAFGVAKNGKVYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDL 456
+ + +G EL F V K G+ Y SQ+IGNTS+ + L F+++A+ + I +D+
Sbjct: 362 GDVSAICLGPELDVTFSVLKGGQCYVSQHIGNTSRYDTLLFLKDAVDYLMGITGTEDVDV 421
Query: 457 VVADLHPNYNTTKLAMEIAEEFNAEFLQVQHHYAHVASVMAEHNLEEVVGIALDGVGYGT 516
+ DLHP + TT A E+A F+AE L+VQHH+AH ++M + ++E + IA DGVGYG
Sbjct: 422 IACDLHPQFLTTSYAEELASRFSAEVLRVQHHHAHALALMLDAGVDECICIAADGVGYGD 481
Query: 517 DGKTWGGEIIYLSYEDIERLAHLEYYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIR 576
DG +WGGEI++ D ERL L +PGGDLA+ YP R L+ +L +E + E
Sbjct: 482 DGTSWGGEILHCHGSDYERLGSLMPQRMPGGDLATRYPARMLLSMLRGRYEGDLQE---- 537
Query: 577 KFCPNAIKSLKYGETELKVILRQLSSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPA 636
F +GE E+ V++RQL SG+N ++ TGRVLDA S L + R YEGE A
Sbjct: 538 LFSERYSDYFPHGEREIGVVMRQLESGLNTGISTGTGRVLDAISAALRICGVRTYEGECA 597
Query: 637 MKLESFASQGKNDLKLTIPVEGEE------IRVSELFEEVLDLMGKASPR-DIAYSIHLA 689
MKLES A + KL++P E +E + S + +V++L+ + R +IA++ A
Sbjct: 598 MKLESEAFRASG--KLSMPFEVKEKGGRYILDTSAILLDVMELIDRGEDRAEIAHAAQKA 655
Query: 690 LARVFAEVSVEKAKEFGAKTVVLGGGVGYNELIVKTVRKIVEGNGLKFLTTYEVPRGDNG 749
+A AE++V A + G K + GGV YNE I VR V G +F+ GD
Sbjct: 656 VAEGLAEMAVLAADDAGVKCIGGTGGVFYNEAISLAVRDYVTERGYRFIQHRNSCAGDGS 715
Query: 750 INVGQA 755
+++GQA
Sbjct: 716 VSLGQA 721
>gi|11498962 hydrogenase expression/formation regulatory protein (hypF)
[Archaeoglobus fulgidus] >gi|7449698|pir||E69420
hydrogenase expression/formation regulatory protein
(hypF) homolog - Archaeoglobus fulgidus
>gi|2649204|gb|AAB89876.1| (AE001009) hydrogenase
expression/formation regulatory protein (hypF)
[Archaeoglobus fulgidus]
Length = 740
Score = 573 bits (1461), Expect = e-162
Identities = 332/778 (42%), Positives = 458/778 (58%), Gaps = 71/778 (9%)
Query: 4 YRIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDLYRK 63
++I V+G+VQ VGFRPFV+RIA LRGYVRN GD VEIVV+ E+ FL L ++
Sbjct: 2 FKITVRGVVQGVGFRPFVHRIASRMGLRGYVRNTGDGSVEIVVDRNPEE---FLNILLKE 58
Query: 64 KPPIAKIEKVEREEIPIQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDPTNK 123
+PP+ IE + + + F I +S + S+ PPD+A+C+ CL E+ D N+
Sbjct: 59 RPPLVVIEDFSVAKTNGEIPETFRIVESGGKSLL---SLPPPDVAVCDKCLEEVLDSKNR 115
Query: 124 RYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPVACP 183
RY+YPF CT+CGPRFTI + LP+DRENT++ +FP+C C+ EY D +RRY A+ +ACP
Sbjct: 116 RYLYPFTSCTDCGPRFTISKSLPFDRENTSLADFPLCPDCRKEYGDIKDRRYFAQTIACP 175
Query: 184 VCGPSYRLYTSDGKEITGDPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAELRKR 243
CGP YR G+ GD AA +D G IIAIKGIGG H+AC T +DVV LRK
Sbjct: 176 RCGPQYRFVWKGGEGGIGD----AANALDSGKIIAIKGIGGYHIAC-LTEDDVVLRLRKL 230
Query: 244 LFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPENLAPGLHT 303
L RPQ+PFA+M +DL + + A +S EE EL S RPIV +RK+ PF E +AP L T
Sbjct: 231 LNRPQQPFAVMVRDLSSAERVAELSNEERAELLSPARPIVVVRKKLPF---EAVAPELDT 287
Query: 304 IGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFEKLKDVADYLLLHNRRI 363
IG+MLPY H++LF K VMTSAN PG PM D E EK++ D L+HN I
Sbjct: 288 IGIMLPYTPLHHLLFQELKADYLVMTSANLPGEPMYID-ESIMEKME--LDGFLVHNLEI 344
Query: 364 PNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEYKGLAVGAELMNAFGVAKNGKVYPS 423
NR DDSVV++V GRR +IRRSRGFVP I+I + +AVGAEL N+ + K GK S
Sbjct: 345 ANRVDDSVVKYVGGRRLLIRRSRGFVPQPIKIDIGFNAIAVGAELYNSIALLKEGKAVVS 404
Query: 424 QYIGNTSKIEVL-EFMREAIKHFFKILRINALDLVVADLHPNYNTTKLAMEIAEEFNAEF 482
QYIGNT+ EF + A+K F + + + +D +++D+HP +NTT A ++++E +
Sbjct: 405 QYIGNTANFRTYNEFFKRAVKFFARYMNLEKIDYIISDMHPLFNTTNFAEKLSKELSCRH 464
Query: 483 LQVQHHYAHVASVMAEHNLEEVVGIALDGVGYGTDGKTWGGEIIYLSYED--IERLAHLE 540
++VQHH+AH SVMAE LE V I +DGVGYG DGK WGGE++ + E ER LE
Sbjct: 465 IKVQHHFAHALSVMAEKGLERAVAITVDGVGYGMDGKVWGGEVLLIDLEKGRFERRGRLE 524
Query: 541 YYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCPNAIKSLKYGETELKVILRQL 600
+ L GGD A+Y PLR + +L HE+ + +C KY + E +++ L
Sbjct: 525 TFGLIGGDAATYRPLRIAVSLLK-RHEL------LEHYC-------KYEDVER--LIKAL 568
Query: 601 SSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLESFASQGKNDLKLTI------ 654
+ +S GR LDA S +L V R YEGEPAMKLE+ A + ++K I
Sbjct: 569 PLAVK---TTSVGRFLDAVSAMLEVCLERTYEGEPAMKLEAAAEPHEVEVKPEIERRRET 625
Query: 655 -----PVEGE----EIRV-------SELFEEVLDLMGKASPRDIAYSIHLALARVFAEVS 698
P + E EI+V + E L+ G+ IAY +AR E++
Sbjct: 626 CVYNSPFDTEGRQGEIKVLMLRDFFTRCMERYLEGEGRGK---IAYEAIAYVARGLGEIA 682
Query: 699 VEKAKEFGAKTVVLGGGVGYNELIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQAF 756
++ A+ +++ GGVGYN ++ V ++ + + P GDNGI++GQ +
Sbjct: 683 LDAARNC---KILISGGVGYNRYFLREVERVCG----EIVVPSLYPLGDNGISLGQIY 733
>pir||T45111 hypF protein [imported] - Methanosarcina mazei (fragment)
>gi|2982748|gb|AAC06379.1| (U47274) similar to
transcriptional regulatory protein HypF in Rhizobium
leguminosarum bv. viciae, Swiss-Prot Accession Number
P28156 [Methanosarcina mazei]
Length = 555
Score = 566 bits (1444), Expect = e-160
Identities = 280/555 (50%), Positives = 378/555 (67%), Gaps = 13/555 (2%)
Query: 6 IHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDLYRKKP 65
+H+ GIVQ VGFRPF+Y++A A+ L GYV+NLG+ VEI++EG E ++ FL++L KKP
Sbjct: 8 LHITGIVQGVGFRPFIYQLAKANGLSGYVKNLGNY-VEILIEGDRECLDNFLKELPEKKP 66
Query: 66 PIAKIEKVEREEIPIQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDPTNKRY 125
P+AKI ++ + +P G+ F I S E +SIIPPD AICE C E+FDP+++ Y
Sbjct: 67 PLAKITELRTKNVPFSGYSGFIIVPS--ESGVFENSIIPPDTAICEQCRSEIFDPSSRYY 124
Query: 126 MYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPVACPVC 185
YPF VCTNCGPR+T + LPYDRENT M +FP+C C+ EY DPLNRRYHA+PV CP C
Sbjct: 125 HYPFTVCTNCGPRYTTVRTLPYDRENTTMADFPLCPECEKEYTDPLNRRYHAQPVCCPKC 184
Query: 186 GPSYRLYTSDGKEITG--DPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAELRKR 243
GP L +G ++ + + A+ L+ +G I+A+KG GG H+AC+A +E+ V ELR+R
Sbjct: 185 GPEIWLSDREGNVLSRGYEAIASASDLLQEGSILAVKGFGGFHIACNARQEEPVNELRRR 244
Query: 244 LFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPENLAPGLHT 303
L RP++PFA+MAK+ + FA + E LTS+RRPI L + E F L ++++PGLH
Sbjct: 245 LKRPEQPFAVMAKNAGVAESFADLEGAGREYLTSHRRPITVLPRSEEFNLADSVSPGLHN 304
Query: 304 IGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFEKLKDVADYLLLHNRRI 363
IGVMLPY GT +LF VYVMTSAN PG PM+ DN EA EKLK + D+ LLHNR I
Sbjct: 305 IGVMLPYTGTQNLLFDRVPDAVYVMTSANLPGRPMVVDNREALEKLKGIVDFYLLHNRVI 364
Query: 364 PNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEYK-GLAVGAELMNAFGVAKNGKVYP 422
NR DD+V+R V+G+ A IRRSRG+VP +E+PFE + + VGAE+ + VAK Y
Sbjct: 365 ANRNDDTVIRIVNGQAAFIRRSRGYVPEPVELPFEIEASIGVGAEMNSTVTVAKGKLAYI 424
Query: 423 SQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLAMEIAEEFNAEF 482
SQYIGNTS +E + E ++H ++ I L DLHP++NTT+ A+++ E
Sbjct: 425 SQYIGNTSHVETYRYHSEVVRHLIRLTGIEPLHW-SCDLHPSFNTTRFALKMGGE---NT 480
Query: 483 LQVQHHYAHVASVMAEHNL---EEVVGIALDGVGYGTDGKTWGGEIIYLSYEDIERLAHL 539
L++QHHYAH+ ++MA+++L ++GIALDGVGYG DG WGGE+ SY ER+ HL
Sbjct: 481 LKIQHHYAHMLALMADNSLPLGSRILGIALDGVGYGGDGTIWGGELFESSYFGYERIGHL 540
Query: 540 EYYPLPGGDLASYYP 554
P+PGGDLAS P
Sbjct: 541 LPQPMPGGDLASRVP 555
>pir||B70359 transcription regulator HypF - Aquifex aeolicus
>gi|2983269|gb|AAC06863.1| (AE000701) transcriptional
regulatory protein HypF [Aquifex aeolicus]
Length = 746
Score = 558 bits (1422), Expect = e-158
Identities = 330/762 (43%), Positives = 449/762 (58%), Gaps = 28/762 (3%)
Query: 2 KAYRIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDLY 61
K ++H++G VQ VGFRPFVYRIA L+G+V N GV I VEG EE ++ FL L
Sbjct: 4 KRLKLHLKGAVQGVGFRPFVYRIAKELGLKGFVIN-DSKGVYIEVEGEEERLKKFLFKLN 62
Query: 62 RKKPPIAKIEKVEREEIPIQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDPT 121
R+KPP+A+I E + + ++ F I KS E+KGE + ++ PDIA CEDCLRELF P
Sbjct: 63 REKPPLARIYSQEIQFLEPVNYEDFVIRKS--EEKGEKEVLVLPDIATCEDCLRELFTPE 120
Query: 122 NKRYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPVA 181
++RYMYPFI CTNCGPRFTIIE LPYDR+NT M+ F MC CK EYE+PL+RR+HA+P A
Sbjct: 121 DRRYMYPFINCTNCGPRFTIIERLPYDRKNTTMKVFEMCPECKREYENPLDRRFHAQPNA 180
Query: 182 CPVCGPSYRLYTSDGKEIT--GDPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAE 239
CP CGP LY DGK I + L + I G I+A+KG+GG HL C+AT E+ V
Sbjct: 181 CPKCGPWVSLY-KDGKLIAEKNEALELLIEEIKIGKIVAVKGVGGFHLICNATNEESVRT 239
Query: 240 LRKRLFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPENLAP 299
LRKR R +KPFA+M K LE V+ +A + E+ L S RPIV ++K++ L +++P
Sbjct: 240 LRKRKRRSEKPFAVMFKSLEQVEAYANPTELEKALLISPERPIVLIQKKK--ELAPSVSP 297
Query: 300 GLHTIGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFEKLKDVADYLLLH 359
GL +G LPY+ H+++ + PV V TSAN P+IKDN+EA EKL ++AD +L+H
Sbjct: 298 GLKRVGAFLPYSPLHHLILNSLDFPV-VATSANISEEPIIKDNKEALEKLGELADLILVH 356
Query: 360 NRRIPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEY--KGLAVGAELMNAFGVAKN 417
NR I R DDSVV+ V G IRRSRG+ PL +E+PFE + LAVG L N F +
Sbjct: 357 NRDIKRRCDDSVVKVVSGVPTPIRRSRGYAPLPVEVPFELPKRVLAVGGMLKNTFALGFK 416
Query: 418 GKVYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLAMEIAEE 477
+V SQ+IG+ + L+ E++ ++ D+VV D+HP Y TT+ A E + +
Sbjct: 417 NQVILSQHIGDIENLNTLKVFEESVFDLMELYEFEP-DVVVCDMHPRYETTRWAEEFSRK 475
Query: 478 FNAEFLQVQHHYAHVASVMAEHNL-EEVVGIALDGVGYGTDGKTWGGEIIYLSYEDIERL 536
++VQHHYAH+ S MAE+ + E+V+GIA DG GYG DG WGGE + Y ER
Sbjct: 476 RGIPLIKVQHHYAHMLSCMAENGIKEKVLGIAWDGTGYGEDGTLWGGEFLVADYTSYERA 535
Query: 537 AHLEYYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCPNAIKSLKYGETELKVI 596
+ + L GG+ A P R LSL +I E P +KS + E ELK +
Sbjct: 536 FNFKPVKLIGGEKAVKEPRRV---ALSLLFDIFGEEALNLDLLP--VKS--FSERELKNL 588
Query: 597 LRQLSSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLESFASQGKNDLKLTIPV 656
GIN +SS GR+ DA + LLN+ YEG+ AM +E D +
Sbjct: 589 YLAWKKGINSPLSSSVGRLFDALASLLNLKQILSYEGQGAMMVEDLYDPLVKD-NYPYEI 647
Query: 657 EGEEIRVSELFEEVLDLMGKASPRDIAYSIHLALARVFAEVSVEKAKEFGAKTVVLGGGV 716
G+E+ + + F EVL K + +A S A+V + A G + V L GGV
Sbjct: 648 RGKEVDLRKAFLEVL----KEKDKSLAAS---RFINTLAKVCEDIALMVGIERVCLSGGV 700
Query: 717 GYNELIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQAFLG 758
N+ +V +++++E K T +VP D GI +GQA G
Sbjct: 701 MQNDPLVTKIKELLEKEKFKVYTHQKVPPNDGGIALGQAVFG 742
>sp|O07451|HYF2_ALCEU HYDROGENASE MATURATION PROTEIN HYPF2 >gi|2183281|gb|AAB60890.1|
(AF002655) HypF2 [Ralstonia eutropha]
Length = 806
Score = 467 bits (1188), Expect = e-130
Identities = 301/800 (37%), Positives = 411/800 (50%), Gaps = 63/800 (7%)
Query: 5 RIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREED-IEGFLRDLYRK 63
RI V+G+VQ VGFRPFVYR+A L G+VRN G AGV+I +G ++ LR L R
Sbjct: 16 RIRVRGVVQGVGFRPFVYRLARELGLAGWVRNDG-AGVDIEAQGSAAALVDSRLRRLRRD 74
Query: 64 KPPIAKIEKVEREEIPIQ-GFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDPTN 122
PP+A+++++ E Q D F I +SS + I D A+C DCL ELFDP N
Sbjct: 75 APPLARVDEIGEERCAAQVDADGFAILESSRSDAAV-HTAIGHDTAVCPDCLAELFDPAN 133
Query: 123 KRYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPVAC 182
+RY Y FI CT CGPR+T+ LPYDR T+M FP C C EY DP +RR+HAEP AC
Sbjct: 134 RRYRYAFINCTQCGPRYTLTWALPYDRATTSMAPFPQCRPCLDEYNDPEHRRFHAEPNAC 193
Query: 183 PVCGPSYRLYTSDGKEITG-DPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAELR 241
P CGPS L + G + DP+ + + +G I+AIKG+GG HLACDA D VA LR
Sbjct: 194 PDCGPSLALLNAQGMPVEDVDPIAETVARLQRGEIVAIKGLGGFHLACDAHNADAVARLR 253
Query: 242 KRLFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPENLAPGL 301
R R +KPFA+M +L T + I E LT+ RPIV LRK +APGL
Sbjct: 254 SRKQREEKPFAVMVANLATAAQWGDIGSGEAALLTASERPIVLLRKHGVDGRFAGVAPGL 313
Query: 302 HTIGVMLPYAGTHYILFH----------WSKTP---VYVMTSANFPGMPMIKDNEEAFEK 348
+GVMLPY Y+LFH W P V VMTSAN G P++ N+E ++
Sbjct: 314 VWLGVMLPYTPLQYLLFHEAAGRPEGLGWLAQPQSLVLVMTSANPGGEPLVTGNDETAQR 373
Query: 349 LKDVADYLLLHNRRIPNRADDSVVRFVDGRRA----VIRRSRGFVPLWIEIPFEYKG-LA 403
L +AD LLH+R I R DDSVVR DG A IRR+RG+ P I++ LA
Sbjct: 374 LTGIADAFLLHDREILVRCDDSVVR-GDGEPAPHVQFIRRARGYTPRAIKLARSGPSVLA 432
Query: 404 VGAELMNAFGVAKNGKVYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHP 463
+G N + + + + SQ++G+ E + EA+ H ++L I LV DLHP
Sbjct: 433 LGGSFKNTVCLTRGDEAFVSQHVGDLGNAATCEALIEAVAHLQRVLEIRP-QLVAHDLHP 491
Query: 464 NYNTTKLAMEIAEEFNAEFLQVQHHYAHVASVMAEHNLEE-VVGIALDGVGYGTDGKTWG 522
++ +T+ A E+A ++ + VQHH+AH+A+V+AEH +E +G+ALDGVG G DG+ WG
Sbjct: 492 DFFSTRHAAELAAQWGVPAVAVQHHHAHIAAVLAEHGSDEPAIGLALDGVGLGDDGQAWG 551
Query: 523 GEIIYLSYEDIERLAHLEYYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCPNA 582
GE + L PLPGGD A+ P R L EE+E +
Sbjct: 552 GETAAGGRRRLLAPRSLARLPLPGGDRAAREPWRMAAAALHAMGRGEEIEGRFPR----- 606
Query: 583 IKSLKYGETELKVILRQLSSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLESF 642
+ ++ R L+ +N +SS GR DA + LL YEG+ AM LE
Sbjct: 607 -------QPGAPMVNRMLAQRLNAPLSSSMGRWFDAAAGLLGTRETMAYEGQAAMLLEGL 659
Query: 643 A-------SQGKNDLKL----TIPVEGEEIRVSELFE-------EVLDLM-------GKA 677
A S G+ +P G + L + LDL+ +
Sbjct: 660 AESWGEQPSPGRPKTVAHSLGGVPRRGGTYKALALPDAWRIDAGNTLDLLPLLEALSAEN 719
Query: 678 SPRDIAYSIHLALARVFAEVSVEKAKEFGAKTVVLGGGVGYNELIVKTVRKIVEGNGLKF 737
R H L +V + G +TVV GGG N ++ + + + + GL
Sbjct: 720 ECRARRSQFHATLVAALEAWTVATVQVTGVRTVVFGGGCFLNHILARNLCRRLAARGLTV 779
Query: 738 LTTYEVPRGDNGINVGQAFL 757
LT ++P D GI +GQ ++
Sbjct: 780 LTARQLPPNDGGIALGQVWV 799
>sp|P40596|HYPF_AZOVI HYDROGENASE MATURATION PROTEIN HYPF
Length = 776
Score = 457 bits (1164), Expect = e-127
Identities = 289/783 (36%), Positives = 413/783 (51%), Gaps = 62/783 (7%)
Query: 5 RIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDLYRKK 64
R+ ++G VQ VG RP V+R+A + L G VRN G AGV I + G + + F R L +
Sbjct: 10 RLLLRGRVQGVGMRPCVHRLATSLGLAGEVRNTG-AGVRIDLLGPPQALAEFERRLPDEL 68
Query: 65 PPIAKIEKVEREEIPI-QGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDPTNK 123
PP+A+++ ++RE +P F F I S E++G PPD A+C CL ELFDP ++
Sbjct: 69 PPLARLDAIQREPLPAGTRFAGFAIAASRDERRGA--LAPPPDAAVCPACLEELFDPHDR 126
Query: 124 RYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPVACP 183
R+ +PFI CT+CGPR+++I LPYDR T++ F +C C+ EYEDP +RR+HA+P+ACP
Sbjct: 127 RWRHPFINCTHCGPRYSLIRRLPYDRVQTSLAGFELCPECRREYEDPADRRFHAQPIACP 186
Query: 184 VCGPSYRLYTSDGKEITGDPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAELRKR 243
CGP + G+ ++GDP+ +A + +G I+A++G+GG HLACDA VAELR+R
Sbjct: 187 ACGPRLCCEDASGRRLSGDPIERALAALARGEILALRGVGGFHLACDARNAGAVAELRRR 246
Query: 244 LFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFP--LPENLAPGL 301
RP KPFA+MA + +++ ++ EL+ P+V LRKR L +AP L
Sbjct: 247 KRRPAKPFALMAANPASLQALVELNENGLAELSGPAAPVVLLRKRPAADDLLAAGVAPDL 306
Query: 302 HTIGVMLPYAGTHYILFH----------WSKTP---VYVMTSANFPGMPMIKDNEEAFEK 348
+G MLP++ H++LFH W+ P + VMTSAN G P I N EA E+
Sbjct: 307 AWLGAMLPHSPLHWLLFHEAAGRPAGTGWAAAPQDLLLVMTSANLSGAPPITGNAEARER 366
Query: 349 LKDVADYLLLHNRRIPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEYKG---LAVG 405
L +AD LLH+R I NR DDSVV + VIR RG PL EIP G LA+G
Sbjct: 367 LAGIADLWLLHDREILNRCDDSVVSALGRAPLVIRSGRGLAPL--EIPLARGGPSILALG 424
Query: 406 AELMNAFGVAKNGKVYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNY 465
+L NA + + + + S + G+ + + + ++L I + V DLHP++
Sbjct: 425 GQLKNAVCLTRGDRAWLSPHNGDLDDADTCRALERTVARLGELLGIRP-ERVACDLHPDF 483
Query: 466 NTTKLAMEIAEEFNAEFLQVQHHYAHVASVMAEHNL-EEVVGIALDGVGYGTDGKTWGGE 524
++ A + AE +QHH+AH+A+ MAEH L E V+G+ALDG G G DG+ GGE
Sbjct: 484 FASRFARDYAERHGLPLHPIQHHHAHIAATMAEHGLAEPVLGLALDGFGLGADGRLRGGE 543
Query: 525 IIYLSYEDIERLAHLEYYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCPNAIK 584
++ ++ + L L PLPGGD AS P R G L H + +F
Sbjct: 544 LLRVAADGCAWLGELNPLPLPGGDQASREPWRMAAGAL---HALGRGGEIATRFA----- 595
Query: 585 SLKYGETELKVILRQLSSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLESFAS 644
E I R L G N +SS GR+ DA + LL + R+ YE E A++LES
Sbjct: 596 ----AEPGNAAIARMLERGFNCPPSSSAGRLFDAAAGLLGLGGRQRYEAEAALRLES--- 648
Query: 645 QGKNDLKLTIPVEGEEIRVSELFE-------EVLDLMGK-ASPRDI---AYSIHLALARV 693
V G RV L+ ++L L+ + A RD A H L
Sbjct: 649 ----------RVVGLPERVPALWRIDDDNRLDLLPLLARLADMRDTRAGAELFHGVLIEA 698
Query: 694 FAEVSVEKAKEFGAKTVVLGGGVGYNELIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVG 753
A + A+ G V LGGG N ++ + + GL L P D G+ +G
Sbjct: 699 LAIWAARAAEATGLHRVALGGGCFLNTVLRDGLCARLRAAGLTPLLARRAPLNDGGLALG 758
Query: 754 QAF 756
QA+
Sbjct: 759 QAW 761
>sp|Q43950|HYPF_AZOCH HYDROGENASE MATURATION PROTEIN HYPF
Length = 776
Score = 447 bits (1138), Expect = e-124
Identities = 273/773 (35%), Positives = 411/773 (52%), Gaps = 40/773 (5%)
Query: 5 RIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDLYRKK 64
R+ ++G VQ VG RP V+R+A + L G V N G+ GV I ++G + F R L +
Sbjct: 10 RLLLRGRVQGVGMRPGVHRLATSLGLAGAVCNTGE-GVRIDLQGPPAALAEFERRLPAEL 68
Query: 65 PPIAKIEKVEREEIPIQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDPTNKR 124
PP+A+++ ++RE +P + S ++ G G PPD A+C CL ELFDP ++R
Sbjct: 69 PPLARLDALQRENLPAGAHFAGFAIVPSRDEAG-GALAPPPDAAVCPACLEELFDPHDRR 127
Query: 125 YMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPVACPV 184
+ +PFI CT+CGPR+++I LPYDR T++ F +C C+ EYEDP +RR+HA+P+ACP
Sbjct: 128 WRHPFINCTHCGPRYSLIRRLPYDRAQTSLAGFALCPDCRHEYEDPADRRFHAQPIACPA 187
Query: 185 CGPSYRLYTSDGKEITGDPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAELRKRL 244
CGP + G + G+P+ A + +G I+A++G+GG HLACDA VA LR+R
Sbjct: 188 CGPRLWCEDAAGNRLPGEPVELALATLRRGEIVALRGVGGFHLACDARNAGAVALLRRRK 247
Query: 245 FRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFP--LPENLAPGLH 302
RP KPFA+MA + +++ ++ EL++ P+V LR+R L +AP L
Sbjct: 248 RRPAKPFALMAANPASLEALVELNETGLNELSAPAAPVVLLRRRPAADGLLAAEVAPDLA 307
Query: 303 TIGVMLPYAGTHYILFH----------WSKTP---VYVMTSANFPGMPMIKDNEEAFEKL 349
+GVMLP++ H++LFH W+ P V VMTSAN G P+I N EA EKL
Sbjct: 308 WLGVMLPHSPLHWLLFHEAAGRPAGTAWTAAPQDLVLVMTSANLSGEPLITGNLEAREKL 367
Query: 350 KDVADYLLLHNRRIPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEYKG---LAVGA 406
+ D LLH+R I NR DDS+V + VIR RG P EI G LA+G
Sbjct: 368 AGITDLWLLHDREILNRVDDSLVNALGRAPVVIRSGRGLAPQ--EIRLARSGPSVLALGG 425
Query: 407 ELMNAFGVAKNGKVYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYN 466
+L NA + + + + S +IG+ + + + F ++L + + + DLHP++
Sbjct: 426 QLKNAICLTQGDRAWLSPHIGDLHSADACRSLERTVAQFGELLGVRP-ERIACDLHPDFF 484
Query: 467 TTKLAMEIAEEFNAEFLQVQHHYAHVASVMAEHNL-EEVVGIALDGVGYGTDGKTWGGEI 525
++ A E AE VQHH+AH+A+V+AEH L E V+G+ALDG G G DG+ GGE+
Sbjct: 485 ASRFAREHAERHGLPLYPVQHHHAHIAAVLAEHGLAEPVLGLALDGFGLGADGRLRGGEL 544
Query: 526 IYLSYEDIERLAHLEYYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCPNAIKS 585
+ ++ + L L PLPGGD A+ P R G L H + +F
Sbjct: 545 LKVAVDGCAWLGELNPLPLPGGDQAAREPWRMAAGAL---HALGRGGEIATRFA------ 595
Query: 586 LKYGETELKVILRQLSSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLES-FAS 644
E I R L G N +SS GR+ DA + LL + R+ YE E A++LES S
Sbjct: 596 ---AEPGSAAIARMLERGFNCPPSSSAGRLFDAAAGLLGLGERQRYEAEAALRLESRIGS 652
Query: 645 QGKNDLKLTIPVEGEEIRVSELFEEVLDLMGKASPRDIAYSIHLALARVFAEVSVEKAKE 704
+ L + + +S L + D ++ +++ +A + V A
Sbjct: 653 LPEAVPPLWRIGDDNRLDLSPLLARLADTHDSRVGAELFHAVLIAALTAWV---VRAAAA 709
Query: 705 FGAKTVVLGGGVGYNELIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQAFL 757
G + + LGGG N ++ + ++ GL+ L P D G+ +GQA++
Sbjct: 710 TGLRRIALGGGCFLNTVLRDGLCTRLQAAGLEPLLPRRAPVNDGGLALGQAWV 762
>pir||S23441 hypothetical protein 6 - Azotobacter vinelandii
>gi|39243|emb|CAA45185.1| (X63650) ORF6 [Azotobacter
vinelandii] >gi|398009|gb|AAA19510.1| (L23970) hypF
[Azotobacter vinelandii]
Length = 755
Score = 446 bits (1136), Expect = e-124
Identities = 283/770 (36%), Positives = 404/770 (51%), Gaps = 62/770 (8%)
Query: 18 RPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDLYRKKPPIAKIEKVEREE 77
RP V+R+A + L G VRN G AGV I + G + + F R L + PP+A+++ ++RE
Sbjct: 2 RPCVHRLATSLGLAGEVRNTG-AGVRIDLLGPPQALAEFERRLPDELPPLARLDAIQREP 60
Query: 78 IPI-QGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDPTNKRYMYPFIVCTNCG 136
+P F F I S E++G PPD A+C CL ELFDP ++R+ +PFI CT+CG
Sbjct: 61 LPAGTRFAGFAIAASRDERRGA--LAPPPDAAVCPACLEELFDPHDRRWRHPFINCTHCG 118
Query: 137 PRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPVACPVCGPSYRLYTSDG 196
PR+++I LPYDR T++ F +C C+ EYEDP +RR+HA+P+ACP CGP + G
Sbjct: 119 PRYSLIRRLPYDRVQTSLAGFELCPECRREYEDPADRRFHAQPIACPACGPRLCCEDASG 178
Query: 197 KEITGDPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAELRKRLFRPQKPFAIMAK 256
+ ++GDP+ +A + +G I+A++G+GG HLACDA VAELR+R RP KPFA+MA
Sbjct: 179 RRLSGDPIERALAALARGEILALRGVGGFHLACDARNAGAVAELRRRKRRPAKPFALMAA 238
Query: 257 DLETVKGFAYISREEEEELTSYRRPIVALRKREPFP--LPENLAPGLHTIGVMLPYAGTH 314
+ +++ ++ EL+ P+V LRKR L +AP L +G MLP++ H
Sbjct: 239 NPASLQALVELNENGLAELSGPAAPVVLLRKRPAADDLLAAGVAPDLAWLGAMLPHSPLH 298
Query: 315 YILFH----------WSKTP---VYVMTSANFPGMPMIKDNEEAFEKLKDVADYLLLHNR 361
++LFH W+ P + VMTSAN G P I N EA E+L +AD LLH+R
Sbjct: 299 WLLFHEAAGRPAGTGWAAAPQDLLLVMTSANLSGAPPITGNAEARERLAGIADLWLLHDR 358
Query: 362 RIPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEYKG---LAVGAELMNAFGVAKNG 418
I NR DDSVV + VIR RG PL EIP G LA+G +L NA + +
Sbjct: 359 EILNRCDDSVVSALGRAPLVIRSGRGLAPL--EIPLARGGPSILALGGQLKNAVCLTRGD 416
Query: 419 KVYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLAMEIAEEF 478
+ + S + G+ + + + ++L I + V DLHP++ ++ A + AE
Sbjct: 417 RAWLSPHNGDLDDADTCRALERTVARLGELLGIRP-ERVACDLHPDFFASRFARDYAERH 475
Query: 479 NAEFLQVQHHYAHVASVMAEHNL-EEVVGIALDGVGYGTDGKTWGGEIIYLSYEDIERLA 537
+QHH+AH+A+ MAEH L E V+G+ALDG G G DG+ GGE++ ++ + L
Sbjct: 476 GLPLHPIQHHHAHIAATMAEHGLAEPVLGLALDGFGLGADGRLRGGELLRVAADGCAWLG 535
Query: 538 HLEYYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCPNAIKSLKYGETELKVIL 597
L PLPGGD AS P R G L H + +F E I
Sbjct: 536 ELNPLPLPGGDQASREPWRMAAGAL---HALGRGGEIATRFA---------AEPGNAAIA 583
Query: 598 RQLSSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLESFASQGKNDLKLTIPVE 657
R L G N +SS GR+ DA + LL + R+ YE E A++LES V
Sbjct: 584 RMLERGFNCPPSSSAGRLFDAAAGLLGLGGRQRYEAEAALRLES-------------RVV 630
Query: 658 GEEIRVSELFE-------EVLDLMGK-ASPRDI---AYSIHLALARVFAEVSVEKAKEFG 706
G RV L+ ++L L+ + A RD A H L A + A+ G
Sbjct: 631 GLPERVPALWRIDDDNRLDLLPLLARLADMRDTRAGAELFHGVLIEALAIWAARAAEATG 690
Query: 707 AKTVVLGGGVGYNELIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQAF 756
V LGGG N ++ + + GL L P D G+ +GQA+
Sbjct: 691 LHRVALGGGCFLNTVLRDGLCARLRAAGLTPLLARRAPLNDGGLALGQAW 740
>sp|P28156|HYPF_RHILV HYDROGENASE MATURATION PROTEIN HYPF >gi|420902|pir||S32875 hypF
protein - Rhizobium leguminosarum bv. viciae
>gi|48734|emb|CAA37161.1| (X52974) HypF product contains
two putative metal-binding motifs CxxC-x18-CxxC
separated by 24 aa residues and arranged as 'zinc
fingers' [Rhizobium leguminosarum]
Length = 759
Score = 440 bits (1119), Expect = e-122
Identities = 274/762 (35%), Positives = 400/762 (51%), Gaps = 45/762 (5%)
Query: 1 MKAYRIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDL 60
++ R+ V+G VQ VGFRPF YR+A A L G+V N AGV I +EGR D F +
Sbjct: 13 VRRLRLRVRGAVQGVGFRPFAYRLARAMRLSGFVLN-DSAGVLIEIEGR--DANHFPEAV 69
Query: 61 YRKKPPIAKIEKVEREEIPIQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDP 120
+ PP+A+I+ ++ E+ G +RF I +S G + I D A C+ C REL DP
Sbjct: 70 RTQAPPLARIDSIDVLELVPAGGERFEILESLG---GRSATRIGADAATCDGCRRELTDP 126
Query: 121 TNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPV 180
++ + YPF+ CT+CGPRFTI LPYDR +T+M FPMC C ++Y DP NRR+HAEPV
Sbjct: 127 ASRFFGYPFVNCTHCGPRFTITRALPYDRAHTSMASFPMCRTCAADYVDPENRRFHAEPV 186
Query: 181 ACPVCGPSYRLYTSDGKEITGDPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAEL 240
ACP CGP P+++ + ++ G I+A+KG+GG HL CDA + + L
Sbjct: 187 ACPNCGPR-----------LSHPIKEISARLEGGAIVALKGVGGFHLLCDARNDGAIGLL 235
Query: 241 RKRLFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPENLAPG 300
R R QKPFA+M +D+E + A + EE L S RPIV + R L +APG
Sbjct: 236 RLRKAGDQKPFAVMVRDIEAARQLARPNEAEEALLISPARPIVLVAARAG-ELSGLIAPG 294
Query: 301 LHTIGVMLPYAGTHYILF-HWSKTPVY-----VMTSANFPGMPMIKDNEEAFEKLKDVAD 354
L +G+ML YA H++L S++ + V TSAN G P++ DN++A +L +AD
Sbjct: 295 LTRVGLMLAYAPVHHLLLDELSRSSPHCHAALVATSANPGGEPLVADNDDAGRRLVAIAD 354
Query: 355 YLLLHNRRIPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEYKG-LAVGAELMNAFG 413
++ H+R I RADDSV++ +DG A IRR+RGFVP +++ + +A GA+L N
Sbjct: 355 LVVTHDRDIVVRADDSVMQVIDGAPAFIRRARGFVPEPVDLGADGPSVIATGADLKNTIC 414
Query: 414 VAKNGKVYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLAME 473
V + + + SQ+IG E + F RE I H IL + + DLHP++ + +
Sbjct: 415 VTRGREAFLSQHIGGLDNAEAIRFQREVIAHLCSILDVKP-EFAACDLHPDFRSVR---- 469
Query: 474 IAEEFNAEFLQVQHHYAHVASVMAEHNLE-EVVGIALDGVGYGTDGKTWGGEIIYLSYED 532
AE N + VQHH AHVA+V+A+ L V+G+ALDG G+GTDG +WGGEI+ + +
Sbjct: 470 TAEGLNLPIVPVQHHLAHVAAVVADDRLSGPVLGLALDGHGFGTDGTSWGGEIVVIDHHR 529
Query: 533 IERLAHLEYYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCPNAIKSLKYGETE 592
+R L PLP GD A+ P R + L I+ L G +
Sbjct: 530 WQRAGSLMPLPLPSGDRAAREPWRMGVAALQAAGRID------------LAPQLWPGHSG 577
Query: 593 LKVILRQLSSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLESFASQGKNDLKL 652
+ + S + SS GR+ DA + + V + YEG+ AM+ E+ + L
Sbjct: 578 VTQLTAMFSGSMPTPVTSSLGRLFDAAAAIAGVRLVQDYEGQAAMEFEALV-RAPRCLAG 636
Query: 653 TIPVEGEEIRVSELFEEVLDLMGKASPRDIAYSIHLALARVFAEVSVEKAKEFGAKTVVL 712
+ + L + + G+ D A H L A+ + A G + V L
Sbjct: 637 GYSIGDGTLDFRPLILHLAE-QGRPCGADAADVFHGTLIAGLADWAARGAAARGTRQVAL 695
Query: 713 GGGVGYNELIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQ 754
GGG N ++ + + + GL+ P D GI +GQ
Sbjct: 696 GGGCMMNRVLAAGLARALRERGLEPSLPRLAPANDGGIALGQ 737
>sp|Q55638|HYPF_SYNY3 HYDROGENASE MATURATION PROTEIN HYPF >gi|7449693|pir||S76302
hypothetical protein - Synechocystis sp. (strain PCC
6803) >gi|1001527|dbj|BAA10154.1| (D64000)
transcriptional regulatory protein HypF [Synechocystis
sp.]
Length = 767
Score = 437 bits (1113), Expect = e-121
Identities = 276/769 (35%), Positives = 403/769 (51%), Gaps = 30/769 (3%)
Query: 1 MKAYRIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDL 60
+K I VQG VQ VGFRPFVY +A L G+V N G +V+ E+ I F L
Sbjct: 2 LKTVAIQVQGRVQGVGFRPFVYTLAQEMGLNGWVNN-STQGATVVITADEKAIADFTERL 60
Query: 61 YRKKPPIAKIEKVEREEIPIQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDP 120
+ PP IE++ E++P++ F F I SS G + I PD++ C CL ELFDP
Sbjct: 61 TKTLPPPGLIEQLAVEQLPLESFTNFTIRPSSD---GPKTASILPDLSTCSACLTELFDP 117
Query: 121 TNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPV 180
+++RY+YPFI CT+CGPR+TIIE LPYDR T M F C C+ EY+ P +RR+HA+P
Sbjct: 118 SDRRYLYPFINCTHCGPRYTIIEALPYDRCRTTMARFRQCTDCEREYKQPGDRRFHAQPN 177
Query: 181 ACPVCGPSYRLYTSDGKEI--TGDPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVA 238
ACP CGP + G+ I + L A + G IIAIKG+GG HL CDAT + V
Sbjct: 178 ACPRCGPQLAFWNRQGQVIAEANEALNFAVDNLKVGNIIAIKGLGGFHLCCDATDFEAVE 237
Query: 239 ELRKRLFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPENLA 298
+LR R RP KP A+M +L + + E E L S PIV L K++ L EN+A
Sbjct: 238 KLRLRKHRPDKPLAVMYGNLGQIVEHYQPNNLEVELLQSAAAPIVLLNKKKQLILVENIA 297
Query: 299 PGLHTIGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFEKLKDVADYLLL 358
PG +GVML Y H++L K P+ V TS N G + DN +A +L+++AD L+
Sbjct: 298 PGNPRVGVMLAYTPLHHLLLKKLKKPM-VATSGNLAGEQICIDNIDALTRLQNIADGFLV 356
Query: 359 HNRRIPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEI--PFEYKGLAVGAELMNAFGVAK 416
H+R I DDSVV+ V G+ +RR+RG+ P I + P + K LA+G N +AK
Sbjct: 357 HDRPIVCPVDDSVVQIVAGKPLFLRRARGYAPQPITLPKPTQKKLLAMGGHYKNTVAIAK 416
Query: 417 NGKVYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLAMEIAE 476
+ Y SQ++G+ + + EAI H ++ + + +VADLHP+Y + + AE
Sbjct: 417 QNQAYVSQHLGDLNSAPTYQNFEEAIAHLSQLYDFSPQE-IVADLHPDY----FSHQYAE 471
Query: 477 EFNAEFLQVQHHYAHVASVMAEHNL--EEVVGIALDGVGYGTDGKTWGGEIIYLSYEDIE 534
VQHHYAH+ +VMAEH + E V+GIA DG GYG DG WGGE + ++ +
Sbjct: 472 NQALPVTFVQHHYAHILAVMAEHGVMEESVLGIAWDGTGYGMDGTIWGGEFLKITQGTWQ 531
Query: 535 RLAHLEYYPLPGGDLASYYPLRALIGIL----SLNHEIEEVEN--TIRKFCPNAIKSLKY 588
R+AHL+ + L G A YP R + +L + + + N N I S
Sbjct: 532 RIAHLQPFHLLGNQQAIKYPHRIALALLWPTFGDDFSADSLGNWLNFNNGFKNKINSRLN 591
Query: 589 GETELKVILRQLSSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLESFASQGKN 648
+ K LRQL SS GR+ D + L+ + +EG+ A+ LE+
Sbjct: 592 QDLNNK-NLRQLWQRGQAPLTSSMGRLFDGIATLIGLINEVTFEGQAAIALEAQIMPNLT 650
Query: 649 DLKLTIPVEGEEIRVSELFEEVLDLM---GKASPRDIAYSIHLALARVFAEVSVEKAKEF 705
+ + + +E +++ + ++ + ++ IA H +L + + A++
Sbjct: 651 EEYYPLTLNNKEKKLAVDWRPLIKAITTEDRSKTNLIATKFHNSLVNLIITI----AQQQ 706
Query: 706 GAKTVVLGGGVGYNELIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQ 754
G + V LGGG N ++ + ++ G L E+P D I +GQ
Sbjct: 707 GIEKVALGGGCFQNCYLLASTITALKKAGFSPLWPRELPPNDGAICMGQ 755
>pir||JN0648 hydrogenase expression/formation protein HupY - Azotobacter
chroococcum >gi|289236|gb|AAA22134.1| (L00674)
hydrogenase accessory protein HupY [Azotobacter
chroococcum]
Length = 755
Score = 436 bits (1110), Expect = e-121
Identities = 267/760 (35%), Positives = 402/760 (52%), Gaps = 40/760 (5%)
Query: 18 RPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDLYRKKPPIAKIEKVEREE 77
RP V+R+A + L G V N G+ GV I ++G + F R L + PP+A+++ ++RE
Sbjct: 2 RPGVHRLATSLGLAGAVCNTGE-GVRIDLQGPPAALAEFERRLPAELPPLARLDALQREN 60
Query: 78 IPIQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDPTNKRYMYPFIVCTNCGP 137
+P + S ++ G G PPD A+C CL ELFDP ++R+ +PFI CT+CGP
Sbjct: 61 LPAGAHFAGFAIVPSRDEAG-GALAPPPDAAVCPACLEELFDPHDRRWRHPFINCTHCGP 119
Query: 138 RFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPVACPVCGPSYRLYTSDGK 197
R+++I LPYDR T++ F +C C+ EYEDP +RR+HA+P+ACP CGP + G
Sbjct: 120 RYSLIRRLPYDRAQTSLAGFALCPDCRHEYEDPADRRFHAQPIACPACGPRLWCEDAAGN 179
Query: 198 EITGDPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAELRKRLFRPQKPFAIMAKD 257
+ G+P+ A + +G I+A++G+GG HLACDA VA LR+R RP KPFA+MA +
Sbjct: 180 RLPGEPVELALATLRRGEIVALRGVGGFHLACDARNAGAVALLRRRKRRPAKPFALMAAN 239
Query: 258 LETVKGFAYISREEEEELTSYRRPIVALRKREPFP--LPENLAPGLHTIGVMLPYAGTHY 315
+++ ++ EL++ P+V LR+R L +AP L +GVMLP++ H+
Sbjct: 240 PASLEALVELNETGLNELSAPAAPVVLLRRRPAADGLLAAEVAPDLAWLGVMLPHSPLHW 299
Query: 316 ILFH----------WSKTP---VYVMTSANFPGMPMIKDNEEAFEKLKDVADYLLLHNRR 362
+LFH W+ P V VMTSAN G P+I N EA EKL + D LLH+R
Sbjct: 300 LLFHEAAGRPAGTAWTAAPQDLVLVMTSANLSGEPLITGNLEAREKLAGITDLWLLHDRE 359
Query: 363 IPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEYKG---LAVGAELMNAFGVAKNGK 419
I NR DDS+V + VIR RG P EI G LA+G +L NA + + +
Sbjct: 360 ILNRVDDSLVNALGRAPVVIRSGRGLAPQ--EIRLARSGPSVLALGGQLKNAICLTQGDR 417
Query: 420 VYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLAMEIAEEFN 479
+ S +IG+ + + + F ++L + + + DLHP++ ++ A E AE
Sbjct: 418 AWLSPHIGDLHSADACRSLERTVAQFGELLGVRP-ERIACDLHPDFFASRFAREHAERHG 476
Query: 480 AEFLQVQHHYAHVASVMAEHNL-EEVVGIALDGVGYGTDGKTWGGEIIYLSYEDIERLAH 538
VQHH+AH+A+V+AEH L E V+G+ALDG G G DG+ GGE++ ++ + L
Sbjct: 477 LPLYPVQHHHAHIAAVLAEHGLAEPVLGLALDGFGLGADGRLRGGELLKVAVDGCAWLGE 536
Query: 539 LEYYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCPNAIKSLKYGETELKVILR 598
L PLPGGD A+ P R G L H + +F E I R
Sbjct: 537 LNPLPLPGGDQAAREPWRMAAGAL---HALGRGGEIATRFA---------AEPGSAAIAR 584
Query: 599 QLSSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLES-FASQGKNDLKLTIPVE 657
L G N +SS GR+ DA + LL + R+ YE E A++LES S + L +
Sbjct: 585 MLERGFNCPPSSSAGRLFDAAAGLLGLGERQRYEAEAALRLESRIGSLPEAVPPLWRIGD 644
Query: 658 GEEIRVSELFEEVLDLMGKASPRDIAYSIHLALARVFAEVSVEKAKEFGAKTVVLGGGVG 717
+ +S L + D ++ +++ +A + V A G + + LGGG
Sbjct: 645 DNRLDLSPLLARLADTHDSRVGAELFHAVLIAALTAWV---VRAAAATGLRRIALGGGCF 701
Query: 718 YNELIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQAFL 757
N ++ + ++ GL+ L P D G+ +GQA++
Sbjct: 702 LNTVLRDGLCTRLQAAGLEPLLPRRAPVNDGGLALGQAWV 741
>pir||E81410 transcription regulatory protein hypF Cj0622 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968089|emb|CAB75258.1| (AL139075) transcriptional
regulatory protein hypF [Campylobacter jejuni]
Length = 729
Score = 433 bits (1101), Expect = e-120
Identities = 269/763 (35%), Positives = 414/763 (54%), Gaps = 60/763 (7%)
Query: 4 YRIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDLYRK 63
Y+I + G+VQ VGFRP VY +A L G VRN G GVEI++ +++ E F+ +L
Sbjct: 6 YKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDG-FGVEIILACTQKECENFIENLKNH 64
Query: 64 KPPIAKIEKVEREEIPIQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDPTNK 123
PP+A+I+++ +I I ++ F I S K + + D A C++C +E FD N
Sbjct: 65 LPPLARIDQLIITQISISNYENFSITPSLENTKS---TPMLSDFAFCKECKKEFFDEKNP 121
Query: 124 RYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPVACP 183
R++YPFI CT+CGPRF+II+ LPYDR +T+M+E MC+FCKSEYEDP NRR+HA+P++CP
Sbjct: 122 RFLYPFITCTHCGPRFSIIKSLPYDRAHTSMQELLMCEFCKSEYEDPKNRRFHAQPISCP 181
Query: 184 VCGPSYRLYTSDGKEITGD--PLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAELR 241
C + L G+ + D ++AK + +G I+AIKGIGG HL CDA E+ + LR
Sbjct: 182 KCKINVFLKNPKGEILAKDQEAFMQSAKFLKEGKILAIKGIGGFHLMCDAFNEEALKTLR 241
Query: 242 KRLFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPENLAPGL 301
R RP+KPFA+M KDL++ K A+I +EE L PIV L+ ++ F L +AP +
Sbjct: 242 LRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLGGVLAPIVILKAKKAFSL---IAPDV 298
Query: 302 HTIGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFEKLKDVADYLLLHNR 361
IG+ML Y H +LF + K + V TSAN G +IKD +KL V D+ L ++R
Sbjct: 299 DKIGIMLAYTPLHLLLFEYFKGSL-VATSANLSGESIIKDEFNLCKKLDKVFDFYLDYDR 357
Query: 362 RIPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEYKG--LAVGAELMNAFGVAKNGK 419
I N +DDS+ + V+G +R SRG P ++E F KG LA+GAEL N F + K
Sbjct: 358 EIINASDDSIAQVVNGETMFLRTSRGLNPFYLERNFNKKGTFLALGAELKNEFVIFYENK 417
Query: 420 VYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLAMEIAEEFN 479
+ S YIG+ ++V E + ++ FFK D ++ D HP+++ A+EF
Sbjct: 418 LLISPYIGDLKSLDVHERFFKLLE-FFKQNYDLKFDAILCDKHPHFS-------YAKEFE 469
Query: 480 AEFLQVQHHYAHVASVMAEHNL-----EEVVGIALDGVGYGTDGKTWGGEIIYLSYEDIE 534
E +++ HHYAH + E+ E+ + DG GYG DGK WGGE+ + ++ E
Sbjct: 470 -ERIKISHHYAHFCAAYFEYEENFAKDEKALAFICDGTGYGEDGKIWGGEVFVGNLKEYE 528
Query: 535 RLAHLEYYPLPGGDLASYYPLRALIGILSLNHEIEE-VENTIRKFCPNAIKSLK--YGET 591
R+AH E + L D+ + ++ L L ++++E+ ++ + K +K+LK Y +
Sbjct: 529 RIAHFENFTLINSDIKN---IQNLALSLIFHYDLEDKAKDFLAKIPKIKLKNLKKIYSHS 585
Query: 592 ELKVILRQLSSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLESFASQGKNDLK 651
L+ SS GR++DAF ++ + YE + + E+F + D
Sbjct: 586 NLQ--------------TSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYDKNL-DFS 630
Query: 652 LTIPVEGEEIRVSELFEEVLDLMGKASPRDIAYSIHLALARVFAEVSVEKAKEFGAKTVV 711
+ VE ++ L L +D + A ++ +K++ K V+
Sbjct: 631 YKLFVEKGQVNFKNLILGAL--------QDEKTKAITGMFNALANFIIDFSKDYDLK-VL 681
Query: 712 LGGGVGYNELIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQ 754
L GGV N KT+ +I++ F + P D+ I +GQ
Sbjct: 682 LSGGVFQN----KTLLEILKAKNFDFFIPLKYPCNDSSIALGQ 720
>sp|P30131|HYPF_ECOLI HYDROGENASE MATURATION PROTEIN HYPF >gi|7449696|pir||D65051 hypF
protein - Escherichia coli (strain K-12)
>gi|2367152|gb|AAC75754.1| (AE000355) transcriptional
regulatory protein [Escherichia coli K12]
Length = 750
Score = 428 bits (1090), Expect = e-119
Identities = 285/767 (37%), Positives = 406/767 (52%), Gaps = 53/767 (6%)
Query: 5 RIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDLYRKK 64
++ ++G VQ VGFRPFV+++A NL G V N GD GVE+ + ED E FL LY+
Sbjct: 10 QLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGD-GVEVRLR---EDPETFLVQLYQHC 65
Query: 65 PPIAKIEKVEREEIPIQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDPTNKR 124
PP+A+I+ VERE + + ST G ++ I PD A C CL E+ P +R
Sbjct: 66 PPLARIDSVEREPFIWSQLPTEFTIRQSTG--GTMNTQIVPDAATCPACLAEMNTPGERR 123
Query: 125 YMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPVACPV 184
Y YPFI CT+CGPRFTII +PYDR T M FP+C C EY DPL+RR+HA+PVACP
Sbjct: 124 YRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 183
Query: 185 CGPSYRLYTSDGKEITGD-PLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAELRKR 243
CGP + S G+ + L+ A + G I+AIKGIGG HLACDA + VA LR R
Sbjct: 184 CGPHLE-WVSHGEHAEQEAALQAAIAQLKMGKIVAIKGIGGFHLACDARNSNAVATLRAR 242
Query: 244 LFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPENLAPGLHT 303
RP KP A+M L G +R + LT+ PIV + K+ L +++AP L+
Sbjct: 243 KHRPAKPLAVM---LPVADGLPDAAR---QLLTTPAAPIVLVDKKYVPELCDDIAPDLNE 296
Query: 304 IGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFEKLKDVADYLLLHNRRI 363
+GVMLP ++L + P+ VMTS N G P NE+A L+ +AD L+HNR I
Sbjct: 297 VGVMLPANPLQHLLLQELQCPL-VMTSGNLSGKPPAISNEQALADLQGIADGFLIHNRDI 355
Query: 364 PNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEYKG----LAVGAELMNAFGVAKNGK 419
R DDSVVR ++RRSRG+VP + +P +K L +GA+L N F + + +
Sbjct: 356 VQRMDDSVVR---ESGEMLRRSRGYVPDALALPPGFKNVPPVLCLGADLKNTFCLVRGEQ 412
Query: 420 VYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLAMEIAEEFN 479
SQ++G+ S + REA++ I VV D HP Y ++ + A E N
Sbjct: 413 AVLSQHLGDLSDDGIQMQWREALRLMQNIYDFTP-QYVVHDAHPGY----VSSQWAREMN 467
Query: 480 AEFLQVQHHYAHVASVMAEHNLE----EVVGIALDGVGYGTDGKTWGGEIIYLSYEDIER 535
V HH+AH A+ +AEH +V+ + LDG+G G +G WGGE + ++Y + E
Sbjct: 468 LPTQTVLHHHAHAAACLAEHQWPLDGGDVIALTLDGIGMGENGALWGGECLRVNYRECEH 527
Query: 536 LAHLEYYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCP---NAIKSLKYGETE 592
L L LPGGDLA+ P R L+ +F P N ++ +
Sbjct: 528 LGGLPAVALPGGDLAAKQPWRNLLA-------------QCLRFVPEWQNYSETASVQQQN 574
Query: 593 LKVILRQLSSGINVAYASSTGRVLDAFSVLLNVS-YRRHYEGEPAMKLESFASQGKN-DL 650
V+ R + GIN ASS GR DA + L + YEGE A LE+ A+
Sbjct: 575 WSVLARAIERGINAPLASSCGRFFDAVAAALGCAPATLSYEGEAACALEALAASCHGVTH 634
Query: 651 KLTIPVEGEEIRVSELFEEVLDLMGKASPRDIAYSIHLALARVFAEVSVEKAKEFGAKTV 710
+T+P ++ ++ +++ L+ + R A++ H ALA+ FA + E+A G T+
Sbjct: 635 PVTMPRVDNQLDLATFWQQWLNWQAPVNQR--AWAFHDALAQGFAALMREQATMRGITTL 692
Query: 711 VLGGGVGYNELIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQAFL 757
V GGV +N L+ + + L F +P GD G+++GQ +
Sbjct: 693 VFSGGVIHNRLLRARLAHYLADFTLLF--PQSLPAGDGGLSLGQGVI 737
>gb|AAA69222.1| (U29579) CG Site No. 18232; alternate gene name hypF [Escherichia
coli]
Length = 750
Score = 428 bits (1088), Expect = e-118
Identities = 285/767 (37%), Positives = 405/767 (52%), Gaps = 53/767 (6%)
Query: 5 RIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDLYRKK 64
++ ++G VQ VGFRPFV+++A NL G V N GD GVE+ + ED E FL LY+
Sbjct: 10 QLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGD-GVEVRLR---EDPETFLVQLYQHC 65
Query: 65 PPIAKIEKVEREEIPIQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDPTNKR 124
PP+A+I+ VERE + + ST G ++ I PD A C CL E+ P +R
Sbjct: 66 PPLARIDSVEREPFIWSQLPTEFTIRQSTG--GTMNTQIVPDAATCPACLAEMNTPGERR 123
Query: 125 YMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPVACPV 184
Y YPFI CT+CGPRFTII +PYDR T M FP+C C EY DPL+RR+HA+PVACP
Sbjct: 124 YRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 183
Query: 185 CGPSYRLYTSDGKEITGD-PLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAELRKR 243
CGP + S G+ + L+ A + G I+AIKGIGG HLACDA + VA LR R
Sbjct: 184 CGPHLE-WVSHGEHAEQEAALQAAIAQLKMGKIVAIKGIGGFHLACDARNSNAVATLRAR 242
Query: 244 LFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPENLAPGLHT 303
RP KP A+M L G +R + LT+ PIV + K+ L +++AP L+
Sbjct: 243 KHRPAKPLAVM---LPVADGLPDAAR---QLLTTPAAPIVLVDKKYVPELCDDIAPDLNE 296
Query: 304 IGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFEKLKDVADYLLLHNRRI 363
+GVMLP ++L + P+ VMTS N G P NE+A L+ +AD L+HNR I
Sbjct: 297 VGVMLPANPLQHLLLQELQCPL-VMTSGNLSGKPPAISNEQALADLQGIADGFLIHNRDI 355
Query: 364 PNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEYKG----LAVGAELMNAFGVAKNGK 419
R DDSVVR ++RRSRG+VP + +P +K L +GA+L N F + + +
Sbjct: 356 VQRMDDSVVR---ESGEMLRRSRGYVPDALALPPGFKNVPPVLCLGADLKNTFCLVRGEQ 412
Query: 420 VYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLAMEIAEEFN 479
SQ++G+ S + REA++ I VV D HP Y ++ + A E N
Sbjct: 413 AVLSQHLGDLSDDGIQMQWREALRLMQNIYDFTP-QYVVHDAHPGY----VSSQWAREMN 467
Query: 480 AEFLQVQHHYAHVASVMAEHNLE----EVVGIALDGVGYGTDGKTWGGEIIYLSYEDIER 535
V HH+AH A+ +AEH +V+ + LDG+G G +G WGGE + ++Y + E
Sbjct: 468 LPTQTVLHHHAHAAACLAEHQWPLDGGDVIALTLDGIGMGENGALWGGECLRVNYRECEH 527
Query: 536 LAHLEYYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCP---NAIKSLKYGETE 592
L L LPGGDLA+ P R L+ +F P N ++
Sbjct: 528 LGGLPAVALPGGDLAAKQPWRNLLA-------------QCLRFVPEWQNYSETASVQHQN 574
Query: 593 LKVILRQLSSGINVAYASSTGRVLDAFSVLLNVS-YRRHYEGEPAMKLESFASQGKN-DL 650
V+ R + GIN ASS GR DA + L + YEGE A LE+ A+
Sbjct: 575 WSVLARAIERGINAPLASSCGRFFDAVAAALGCAPATLSYEGEAACALEALAASCHGVTH 634
Query: 651 KLTIPVEGEEIRVSELFEEVLDLMGKASPRDIAYSIHLALARVFAEVSVEKAKEFGAKTV 710
+T+P ++ ++ +++ L+ + R A++ H ALA+ FA + E+A G T+
Sbjct: 635 PVTMPRVDNQLDLATFWQQWLNWQAPVNQR--AWAFHDALAQGFAALMREQATMRGITTL 692
Query: 711 VLGGGVGYNELIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQAFL 757
V GGV +N L+ + + L F +P GD G+++GQ +
Sbjct: 693 VFSGGVIHNRLLRARLAHYLADFTLLF--PQSLPAGDGGLSLGQGVI 737
>sp|Q02987|HYPF_RHOCA HYDROGENASE MATURATION PROTEIN HYPF >gi|479252|pir||S32948 hypF
protein - Rhodobacter capsulatus
>gi|46050|emb|CAA78795.1| (Z15087) hypF [Rhodobacter
capsulatus]
Length = 739
Score = 418 bits (1064), Expect = e-116
Identities = 287/779 (36%), Positives = 411/779 (51%), Gaps = 58/779 (7%)
Query: 1 MKAYRIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDL 60
M+A+RI V+G VQ VGFRPFV+++A A LRG V N + GV I V G D LRD
Sbjct: 1 MQAWRIRVRGQVQGVGFRPFVWQLARARGLRGVVLNDAE-GVLIRVAGDLGDFAAALRD- 58
Query: 61 YRKKPPIAKIEKVER-----EEIPIQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLR 115
+ PP+A+++ VE +++P + F I S ++ + PD A C DCL
Sbjct: 59 --QAPPLARVDAVEVTAAVCDDLP----EGFQIAASGA---AGAETRVTPDAATCPDCLA 109
Query: 116 ELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRY 175
E+ +R Y F CT+CGPRF+I++ LPYDR T M F MC C++EYEDP +RR+
Sbjct: 110 EIRGEGRRRG-YAFTNCTHCGPRFSILQSLPYDRARTTMAPFAMCPACRAEYEDPADRRF 168
Query: 176 HAEPVACPVCGPSYRLYTSDGKEITGDPLRKAAKLIDKGYIIAIKGIGGIHLACDATRED 235
HA+P+ACP CGP L + G E+ GD + AA + G I+A+KG+GG HLACDAT D
Sbjct: 169 HAQPIACPDCGPRLWL-EAGGAELPGDAIGLAAARLKAGEILAVKGLGGFHLACDATNAD 227
Query: 236 VVAELRKRLFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPE 295
V LR R RP KPFA+MA++ E + +S L PIV + R LPE
Sbjct: 228 AVDLLRARKRRPAKPFALMARE-EDLARIVAVSPAALAALRDPAAPIVLMPARG--SLPE 284
Query: 296 NLAPGLHTIGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFEKLKDVADY 355
LAPG+ +GVMLPY H++L + V VMTS N G P + N+EA EKL AD
Sbjct: 285 TLAPGMAELGVMLPYTPLHHLLLD-AFGGVLVMTSGNLSGAPQVIGNDEAREKLSAFADA 343
Query: 356 LLLHNRRIPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEYKG----LAVGAELMNA 411
L+H+R I R DDSVVR VD V+RR+RG VP + +P ++ +A G ++ A
Sbjct: 344 FLMHDRAIARRLDDSVVR-VD-PPMVLRRARGQVPGTLPLPPGFETAPQIVAYGGQMKAA 401
Query: 412 FGVAKNGKVYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLA 471
+ K G+ ++G + E +A + + + V DLHP++ ++
Sbjct: 402 LCLIKTGQALLGHHLGELDEALTWEAFLQADADYAALFD-HRPQAVAVDLHPDFRASRHG 460
Query: 472 MEIAEEFNAEFLQVQHHYAHVASVMAEH----NLEEVVGIALDGVGYGTDGKTWGGEIIY 527
A + VQHH+AH+A+ + E+ + +V I LDG+G G DG WGGE++
Sbjct: 461 AARAGRLGVPLIAVQHHHAHLAACLGENLWPKDGGKVAVIVLDGLGLGPDGTVWGGELLL 520
Query: 528 LSYEDIERLAHLEYYPLPGGDLASYYPLR-ALIGILSLNHEIEEVENTIRKFCPNAIKSL 586
Y+ ER+A L+ PL GGD A P R AL+ + + + + + P A + L
Sbjct: 521 GDYKGFERVAWLKPAPLIGGDRAQIEPWRNALVRL-----DAAGLSDLADRLFPAAPRDL 575
Query: 587 KYGETELKVILRQLSS-GINVAYASSTGRVLDAFSVLLNV-SYRRHYEGEPAMKLESFAS 644
RQL++ GIN +SS GR+ DA + L + R+ YEGE AM+LES A+
Sbjct: 576 ----------ARQLAAKGINAPLSSSAGRLFDAVAACLGICPMRQSYEGEAAMRLESLAA 625
Query: 645 QGKNDLKLTIPVEGEEIRVSELFEEVLDLMGKASPRDIAYSIHLALARVFAEVSVEKAKE 704
+P G I + LF+ L P +A+++H +LA+ FA + +
Sbjct: 626 D--TGPVPDLPCVGGAIDPAPLFQL---LAAGERPDRVAHALHASLAQAFAAEARRLIEA 680
Query: 705 FGAKTVVLGGGVGYNELIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQAFLGGLYLE 763
A+ V L GG N + R + G+ LT +P D G+ +GQA + LE
Sbjct: 681 GQAEAVALTGGCFQNSRLATMTRNFLADQGI--LTQGRIPANDGGLALGQALVAAAKLE 737
>dbj|BAA03315.1| (D14422) HYDA [Escherichia coli]
Length = 749
Score = 410 bits (1043), Expect = e-113
Identities = 281/768 (36%), Positives = 398/768 (51%), Gaps = 56/768 (7%)
Query: 5 RIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDLYRKK 64
++ ++G VQ VGFRPFV+++A NL G V N GD GVE+ + ED E FL LY+
Sbjct: 10 QLRIRGKVQGVGFRPFVWQLARELNLHGDVCNDGD-GVEVRLR---EDPETFLVQLYQHC 65
Query: 65 PPIAKIEKVEREEIPIQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDPTNKR 124
PP+A+I+ VERE + + ST G ++ I PD A C CL E+ P +R
Sbjct: 66 PPLARIDSVEREPFIWSQLPTEFTIRQSTG--GTMNTQIVPDAATCPACLAEMNTPGERR 123
Query: 125 YMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPVACPV 184
Y YPFI CT+CGPRFTII +PYDR T M FP+C C EY DPL+RR+HA+PVACP
Sbjct: 124 YRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 183
Query: 185 CGPSYRLYTSDGKEITGD-PLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAELRKR 243
CGP + S G+ + L+ A + G I+AIKGIGG HLACDA + VA LR R
Sbjct: 184 CGPHLE-WVSHGEHAEQEAALQAAIAQLKMGKIVAIKGIGGFHLACDARNSNAVATLRAR 242
Query: 244 LFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPENLAPGLHT 303
RP KP A+M L G +R + LT+ PIV + K+ L +++AP L+
Sbjct: 243 KHRPAKPLAVM---LPVADGLPDAAR---QLLTTPAAPIVLVDKKYVPELCDDIAPDLNE 296
Query: 304 IGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFEKLKDVADYLLLHNRRI 363
+GVMLP ++L + P+ VMTS N G P NE+A L+ +AD L+HNR I
Sbjct: 297 VGVMLPANPLQHLLLQELQCPL-VMTSGNLSGKPPAISNEQALADLQGIADGFLIHNRDI 355
Query: 364 PNRADDSVVRFVDGRRA-----VIRRSRGFVPLWIEIPFEYKGLAVGAELMNAFGVAKNG 418
R DDSVVR + R A V GF + +P L +GA+L N F + +
Sbjct: 356 VQRMDDSVVR--ERRNAAPFAGVCAGCAGFASGFKNVP---PVLCLGADLKNTFCLVRGE 410
Query: 419 KVYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLAMEIAEEF 478
+ SQ++G+ S + EA + I VV D HP Y ++ + A E
Sbjct: 411 QAVLSQHLGDLSDDGIQMQCAEASRLMQNIYDFTP-QYVVHDAHPGY----VSSQWAREM 465
Query: 479 NAEFLQVQHHYAHVASVMAEHNLE----EVVGIALDGVGYGTDGKTWGGEIIYLSYEDIE 534
N V HH+AH A+ +AEH +V+ + LDG+G G +G WGGE + ++Y + E
Sbjct: 466 NLPTQTVLHHHAHAAACLAEHQWPLDGGDVIALTLDGIGMGENGALWGGECLRVNYRECE 525
Query: 535 RLAHLEYYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCP---NAIKSLKYGET 591
L L LPGGDLA+ P R L+ +F P N ++ +
Sbjct: 526 HLGGLPAVALPGGDLAAKQPWRNLLA-------------QCLRFVPEWQNYSETASVQQQ 572
Query: 592 ELKVILRQLSSGINVAYASSTGRVLDAFSVLLNVS-YRRHYEGEPAMKLESFASQGKN-D 649
V+ R + GIN ASS GR DA + L + YEGE A LE+ A+
Sbjct: 573 NWSVLARAIERGINAPLASSCGRFFDAVAAALGCAPATLSYEGEAACALEALAASCHGVT 632
Query: 650 LKLTIPVEGEEIRVSELFEEVLDLMGKASPRDIAYSIHLALARVFAEVSVEKAKEFGAKT 709
+T+P ++ ++ +++ L+ + R A++ H ALA+ FA + E+A G T
Sbjct: 633 HPVTMPRVDNQLDLATFWQQWLNWQAPVNQR--AWAFHDALAQGFAALMREQATMRGITT 690
Query: 710 VVLGGGVGYNELIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQAFL 757
+V GGV +N L+ + + L F +P GD G+++GQ +
Sbjct: 691 LVFSGGVIHNRLLRARLAHYLADFTLLF--PQSLPAGDGGLSLGQGVI 736
>emb|CAB39912.1| (Y14197) uptake hydrogenase [Rhodobacter sphaeroides]
Length = 758
Score = 401 bits (1020), Expect = e-110
Identities = 274/780 (35%), Positives = 404/780 (51%), Gaps = 70/780 (8%)
Query: 6 IHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDLYRKKP 65
I V+G VQ VGFRPFV+++A L G V N G AGV I G + FL L + P
Sbjct: 9 IRVRGQVQGVGFRPFVWQLARRLGLEGEVLNDG-AGVMIRATGAR--LAEFLAALGTEAP 65
Query: 66 PIAKIEKVEREEIPIQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDPTNKRY 125
P+A+++ VE P+ F I S+ G + + PD A C CL E+ T +R
Sbjct: 66 PLARVDAVEARPAPVVRRP-FRIAASAG---GAVATRVTPDAATCPACLAEIRG-TGRRR 120
Query: 126 MYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPVACPVC 185
Y F CT+CGPR+TI+ +LPYDR T+M FPMC C++EYEDP +RR+HA+P+ACP C
Sbjct: 121 GYAFTNCTHCGPRYTILRELPYDRARTSMAPFPMCPDCRAEYEDPADRRFHAQPIACPAC 180
Query: 186 GPSYRL-----------YTSDGKE------ITGDPLRKAAKLIDKGYIIAIKGIGGIHLA 228
GP L ++G E GDP+ +AA+L+ +G I+A+KG+GG HLA
Sbjct: 181 GPRLWLEAEGLCLLDGPVRAEGAEAPQGGLCAGDPVAEAARLLARGGILAVKGLGGFHLA 240
Query: 229 CDATREDVVAELRKRLFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKR 288
CDA + +LR R RP KPFA+MA + E G A +++ + L P+V +R R
Sbjct: 241 CDARDSGALRQLRLRKRRPGKPFALMATE-EMAAGIADLAQADRVLLRDPAAPVVLVRGR 299
Query: 289 EPFPLPENLAPGLHTIGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFEK 348
LPE +APG+ T+G+M PY H+ L P+ VMTSAN G P + N EA +
Sbjct: 300 G--LLPEEVAPGMTTLGIMRPYTPLHHRLIEAFGGPL-VMTSANRSGAPQVIGNGEARAE 356
Query: 349 LKDVADYLLLHNRRIPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEY----KGLAV 404
L +AD L+H+R I R DDSV R V+RR+RG P + +P + + LA+
Sbjct: 357 LAGIADAFLMHDRAIVRRLDDSVER--ARPPMVLRRARGRAPGTLPLPEGFGRAPRVLAL 414
Query: 405 GAELMNAFGVAKNGKVYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPN 464
G ++ A + K+G+ S ++G+ + + E AI + A +LV DLHP
Sbjct: 415 GGQMKGAICLVKDGQALLSHHLGDLDEAQSFEAFTRAIADHAALFDHRA-ELVAVDLHPG 473
Query: 465 YNTTKLAMEIAEEFNAEFLQVQHHYAHVASVMAEH----NLEEVVGIALDGVGYGTDGKT 520
Y T + +VQHH+AH+A+ + + V GI LDG G G+DG
Sbjct: 474 YRAT----QEGRRMGLPLAEVQHHHAHLAACLGDAFWPLGAGPVAGIVLDGAGLGSDGTI 529
Query: 521 WGGEIIYLSYEDIERLAHLEYYPLPGGDLASYYPLR-ALIGILSLNHEIEEVENTIRKFC 579
WGGE++ SY ++ R+AHL PLPGG+ A+ P R AL+ + + + + +
Sbjct: 530 WGGELLLGSYREVLRVAHLAQAPLPGGEAAARDPWRNALVRL-----DAAGLGDLADRLF 584
Query: 580 PNAIKSLKYGETELKVILRQLSSGINVAYASSTGRVLDAFSVLLNVSY-RRHYEGEPAMK 638
P+ + + + R +++G+N +SS GR+ DA + L ++ R+ YEG+ AM+
Sbjct: 585 PDRPR---------ETLRRAVAAGVNAPLSSSAGRLFDAVAACLGLAADRQSYEGDAAMR 635
Query: 639 LESFASQGKNDLKLTIPVEGEEIRVSELFEEV-LDLMGKASPRDIAYSIHLALARVFAEV 697
LE+ G P + + +F + DL P I+ S+H LAR
Sbjct: 636 LEALEGTG-------APYPFAGLDPAPMFRALATDLAAGVPPGAISDSLHRGLARAVCAP 688
Query: 698 SVEKAKEFGAKTVVLGGGVGYNELIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQAFL 757
+ A+ V L GG N ++ + E G+ LT VP D G+ +GQA +
Sbjct: 689 ARALVAGGRAEAVALTGGAFQNARLLAAC--LAELAGVPVLTHRAVPPNDGGLALGQALI 746
>pir||H64525 transcription regulator - Helicobacter pylori (strain 26695)
>gi|2313122|gb|AAD07115.1| (AE000526) transcriptional
regulator (hypF) [Helicobacter pylori 26695]
Length = 769
Score = 371 bits (942), Expect = e-101
Identities = 251/769 (32%), Positives = 382/769 (49%), Gaps = 48/769 (6%)
Query: 5 RIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDLYRKK 64
+I + G+VQ VG RPF+Y +A L G+VRN A +EI++ + E FL L +
Sbjct: 22 KITLFGVVQGVGMRPFIYTLAQKLELVGFVRNT-QAALEIILPAHKT--ESFLNALKKGL 78
Query: 65 PPIAKIEKVEREEIP-IQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDPTNK 123
PP+A +EK+ F+ F I +S S IP D+ +C+DCLRE+ D +
Sbjct: 79 PPLALVEKIIISPYDKALHFNGFRILESKNHPLNLL-SQIPKDLGVCKDCLREIRDKNSP 137
Query: 124 RYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPVACP 183
+ Y F C CG R++++ LPYDREN+A++ F +CDFC S Y+DP N+R+H + ++C
Sbjct: 138 YFHYAFNSCAKCGARYSLLNALPYDRENSALKPFKLCDFCASIYQDPTNKRFHIQGISCK 197
Query: 184 VCG--PSYRLYTSDGKEITGDPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAELR 241
CG +Y+ + +D D L + AK I KG IIA+KG+GG L CD + LR
Sbjct: 198 KCGIALNYKRFKND------DALLECAKDIQKGKIIALKGLGGFALLCDGRNFQTIERLR 251
Query: 242 KRLFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPENLAPGL 301
RP KPFA+M KDL T K A+++ E E L S PI+ RK+ L N+A
Sbjct: 252 LLKNRPLKPFALMFKDLNTAKQHAFLNALECESLISTSAPILLARKKPDIKLAPNIAKNS 311
Query: 302 HTIGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFEKLKDVADYLLLHNR 361
GV+LPY H +L P+ V TSANF +P+ D E + L + D+ L HNR
Sbjct: 312 PFYGVILPYTPLHALLLDLLDFPI-VFTSANFSSLPLASDEAE-IDALSFIFDFKLTHNR 369
Query: 362 RIPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEYKG-----LAVGAELMNAFGVAK 416
I +R DDS+V+ VD +R +RGF PL++ +P G LA+GA+ F +
Sbjct: 370 AIIHRIDDSIVQHVDNAIRPMRLARGFAPLYLTLPKRSNGSPKKILALGAQQKGHFSLLD 429
Query: 417 NGK--VYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLAMEI 474
+G + S + G+ S +E + +E + F K ++ D H NY TT++A
Sbjct: 430 SGTSILLLSPFCGDLSVLENEKHFKETLNFFLKTYDFKP-TILACDKHQNYTTTQMAF-- 486
Query: 475 AEEFNAEFLQVQHHYAH-VASVM-----AEHNLEEVVGIALDGVGYGTDGKTWGGEIIYL 528
+FN LQVQHH+AH +ASV+ H +GI DG G + K +G E
Sbjct: 487 --DFNTPLLQVQHHHAHFLASVLDALLQDPHLNHPFIGIVWDGSG-AYENKIYGAECFVG 543
Query: 529 SYEDIERLAHLEYYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCPNAIKSLKY 588
E IE A E + L GG A P R ++ I +L H++ ++ ++K +
Sbjct: 544 DLERIEETARFEEFWLLGGQKAIKEPRRLVLEI-ALKHQLNKLLKRVQK---------HF 593
Query: 589 GETELKVILRQLSSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLESFASQGKN 648
E EL++ + I +S GR+ D + L+++ +E E LE+ A Q
Sbjct: 594 KEDELEIFQQMHDKKIQSIATNSIGRLFDIVAFSLDLTGTISFEAESGQVLENLALQSDE 653
Query: 649 DLKLTIPVEGEEIRVSELFEEVLDLMGKASPRDIAYSIHLALARVFAEVSVEKAKEFGAK 708
++ + + E ++ +G P IA +L + + V F
Sbjct: 654 IAFYPFEIKNSVVCLKEFYQAFEKDLGVLEPERIAKKFFNSLVEIITALIV----PFKEH 709
Query: 709 TVVLGGGVGYNELIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQAFL 757
VV GGV N+L+ + + K + G ++ P D+ I +GQA +
Sbjct: 710 VVVCSGGVFCNQLLCEQLAKRLRGLKRQYFFHKHFPPNDSSIPIGQALM 758
>pir||G71981 probable transcription regulator - Helicobacter pylori (strain
J99) >gi|4154540|gb|AAD05618.1| (AE001443) putative
TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 757
Score = 360 bits (914), Expect = 4e-98
Identities = 253/773 (32%), Positives = 381/773 (48%), Gaps = 56/773 (7%)
Query: 5 RIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDLYRKK 64
+I + G+VQ VG RPFVY +A L G+VRN A +EIV+ + E FL L +
Sbjct: 10 KITLFGVVQGVGMRPFVYILAQKLGLVGFVRN-AQAALEIVLPAHKT--ESFLNALKKGL 66
Query: 65 PPIAKIEKVEREEIPIQGFDR--FYIEKSSTEKKGEGDSI---IPPDIAICEDCLRELFD 119
PP+A +EK I I +D+ + + E K ++ IP D+ +CEDCL E+ D
Sbjct: 67 PPLALVEK-----IIISPYDKALHFNDFRILESKNHPLNLLSQIPKDLGVCEDCLCEIRD 121
Query: 120 PTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEP 179
+ + Y F C CG R++++ +PYDREN+A++ F +C FC S Y+D N+R+H +
Sbjct: 122 KNSPYFHYAFNSCAKCGARYSLLNAMPYDRENSALKPFKLCKFCASVYKDAHNKRFHIQG 181
Query: 180 VACPVCG--PSYRLYTSDGKEITGDPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVV 237
++C CG +Y+ + +D D L + AK I KG IIA+KG+GG L CDA +
Sbjct: 182 ISCKKCGIALNYKRFKND------DALLECAKDIQKGKIIALKGLGGFALLCDARNFKTI 235
Query: 238 AELRKRLFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPENL 297
LR RP KPFA+M KDL K A+++ E E L S PI+ RK+ L N+
Sbjct: 236 ERLRLLKNRPLKPFALMFKDLNAAKQHAFLNALECESLNSVSAPILLARKKPDTQLAPNI 295
Query: 298 APGLHTIGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFEKLKDVADYLL 357
A GV+LPY H +L +P+ V TSANF +P+ D +E + L + D+ L
Sbjct: 296 AKNSPFYGVILPYTPLHALLLDLLDSPI-VFTSANFSSLPLASDEKE-IDSLHFIFDFKL 353
Query: 358 LHNRRIPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIP-----FEYKGLAVGAELMNAF 412
HNR I +R DDS+ + VD +R RGF PL++ +P K LA+GAE F
Sbjct: 354 THNRTIIHRIDDSIAQRVDNAIRPMRLVRGFAPLYLTLPKRSFNAPKKILALGAEQKGHF 413
Query: 413 GV--AKNGKVYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKL 470
+ ++ + S + G+ S +E + +E + F K L+ D H NY TTK+
Sbjct: 414 SLLDSETSVLLLSPFCGDLSVLENEKHFKETLNFFLKTYDFKP-TLLACDEHQNYTTTKM 472
Query: 471 AMEIAEEFNAEFLQVQHHYAH-VASVM-----AEHNLEEVVGIALDGVGYGTDGKTWGGE 524
A +FN LQVQHH+AH +ASV+ H +GI DG G + K +G E
Sbjct: 473 AF----DFNTPLLQVQHHHAHFLASVLDALLQDPHLNHPFIGIVWDGSG-AYENKIYGAE 527
Query: 525 IIYLSYEDIERLAHLEYYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCPNAIK 584
E IE +A E + L GG A P R ++ I +L H++ ++ ++K
Sbjct: 528 CFVGDLERIEEVARFEEFWLLGGQKAIKEPRRLVLEI-ALKHQLNKLLKRVQK------- 579
Query: 585 SLKYGETELKVILRQLSSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLESFAS 644
+ E EL + + I +S GR+ D + L V +E E LE+ A
Sbjct: 580 --HFKEDELGIFKQMHDKKIQSVATNSIGRLFDIVAFSLGVVGTISFEAESGQVLENLAL 637
Query: 645 QGKNDLKLTIPVEGEEIRVSELFEEVLDLMGKASPRDIAYSIHLALARVFAEVSVEKAKE 704
Q ++ +R+ E ++ +G P+ IA +L E+
Sbjct: 638 QSDEIAFYPFEIKNSVVRLKEFYQAFEKDLGVLEPKRIAKKFFNSL----VEIITALIAP 693
Query: 705 FGAKTVVLGGGVGYNELIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQAFL 757
F VV GGV N+L+ + + K ++ ++ P D+ I VGQA +
Sbjct: 694 FKGHVVVCSGGVFCNQLLCEQLAKRLKKLQREYFFHKHFPPNDSSIPVGQALM 746
>emb|CAA85443.1| (Z36981) HYPF [Rhizobium leguminosarum]
Length = 476
Score = 343 bits (870), Expect = 5e-93
Identities = 194/478 (40%), Positives = 278/478 (57%), Gaps = 26/478 (5%)
Query: 1 MKAYRIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDL 60
++ R+ V+G VQ VGFRPF YR+A A L G+V N AGV I +EGR D F +
Sbjct: 13 VRRLRLRVRGAVQGVGFRPFAYRLARAMRLSGFVLN-DSAGVLIEIEGR--DANHFPEAV 69
Query: 61 YRKKPPIAKIEKVEREEIPIQGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDP 120
+ PP+A+I+ ++ E+ G +RF I +S G + I D A C+ C REL DP
Sbjct: 70 RTQAPPLARIDSIDVLELVPAGGERFEILESLG---GRSATRIGADAATCDGCRRELTDP 126
Query: 121 TNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMCDFCKSEYEDPLNRRYHAEPV 180
++ + YPF+ CT+CGPRFTI LPYDR +T+M FPMC C ++Y DP NRR+HAEPV
Sbjct: 127 ASRFFGYPFVNCTHCGPRFTITRALPYDRAHTSMASFPMCRTCAADYVDPENRRFHAEPV 186
Query: 181 ACPVCGPSYRLYTSDGKEITGDPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAEL 240
ACP CGP P+++ + ++ G I+A+KG+GG HL CDA + + L
Sbjct: 187 ACPNCGPR-----------LSHPIKEISARLEGGAIVALKGVGGFHLLCDARNDGAIGLL 235
Query: 241 RKRLFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPENLAPG 300
R R R QKPFA+M +D+E + A + EE L S RPIV + R L +APG
Sbjct: 236 RLRKARDQKPFAVMVRDIEAARQLARPNEAEEALLISPARPIVLVAARAG-ELSGLIAPG 294
Query: 301 LHTIGVMLPYAGTHYILF-HWSKTPVY-----VMTSANFPGMPMIKDNEEAFEKLKDVAD 354
L +G+ML YA H++L S++ + V TSAN G P++ DN++A +L +AD
Sbjct: 295 LTRVGLMLAYAPVHHLLLDELSRSSPHCHAALVATSANPGGEPLVADNDDAGRRLVAIAD 354
Query: 355 YLLLHNRRIPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEYKG-LAVGAELMNAFG 413
++ H+R I RADDSV++ +DG A IRR+RGFVP +++ + +A GA+L N
Sbjct: 355 LVVTHDRDIVVRADDSVMQVIDGAPAFIRRARGFVPEPVDLGADGPSVIATGADLKNTIC 414
Query: 414 VAKNGKVYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLA 471
V + + + SQ+IG E + F RE I H IL + + DLHP++ + + A
Sbjct: 415 VTRGREAFLSQHIGGLDNAEAIRFQREVIAHLCSILDVKP-EFAACDLHPDFRSVRTA 471
>sp|P45805|HYF1_ALCEU HYDROGENASE MATURATION PROTEIN HYPF1 >gi|2120944|pir||I39530 hypF
protein - Alcaligenes eutrophus >gi|7465681|pir||S29976
hypF1 protein - Alcaligenes eutrophus
>gi|577728|emb|CAA49731.1| (X70183) HYPF [Ralstonia
eutropha]
Length = 394
Score = 163 bits (409), Expect = 6e-39
Identities = 115/366 (31%), Positives = 184/366 (49%), Gaps = 20/366 (5%)
Query: 402 LAVGAELMNAFGVAKNGKVYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADL 461
LA GA L NA + + +V S G+ + + ++++ + V DL
Sbjct: 16 LACGAWLKNAACLLRGAEVLWSPIHGDLGDPANCDALDQSVEQLLDSAH-GQVQAVAHDL 74
Query: 462 HPNYNTTKLAMEIAEEFNAEFLQVQHHYAHVASVMAEHNLEE-VVGIALDGVGYGTDGKT 520
HP++ +T+LA +A + VQHH+AH+A++MAE++L E V+G+ALDGVG GTDG
Sbjct: 75 HPDFYSTQLAQRLAARLCVPAVAVQHHHAHIAALMAEYDLREPVIGLALDGVGLGTDGTA 134
Query: 521 WGGEIIYLSYEDIERLAHLEYYPLPGGDLASYYPLRALIGILSLNHEIEEVENTIRKFCP 580
WGGE++++S + RL HL+ PLPGGD+A+ P R L H ++ R++
Sbjct: 135 WGGELLWVSPSEWCRLGHLQSLPLPGGDVAAREPWRMAAAAL---HVLDRTGEIGRRY-- 189
Query: 581 NAIKSLKYGETELKVILRQLSSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLE 640
GE + + L +N +SS GR DA + L VS R+ E + A+ LE
Sbjct: 190 ----GAVVGEQAARTVAAMLERQLNCPRSSSAGRWFDAAAGALGVSVRQQAEAQAAIALE 245
Query: 641 SFASQGKNDLKL-----TIPVEGEEI-RVSELFEEVLDLMGKASPRDIAYS---IHLALA 691
+ A+ + L T V+ + + + L E++ L + A H+ALA
Sbjct: 246 ALAADYLSALSPPECVGTYVVDQDGVLDLRGLLEQLFALADEGQAGQAARGAALFHVALA 305
Query: 692 RVFAEVSVEKAKEFGAKTVVLGGGVGYNELIVKTVRKIVEGNGLKFLTTYEVPRGDNGIN 751
+ + A+ G KTV LGGG N ++ +V+ + GL+ L V GD G+
Sbjct: 306 EALVGWAADAAQGHGLKTVALGGGCFMNGILSASVQAGLAARGLQALLPRAVSCGDAGLA 365
Query: 752 VGQAFL 757
+GQA++
Sbjct: 366 LGQAWV 371
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.414
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 293682594
Number of Sequences: 2977
Number of extensions: 13108552
Number of successful extensions: 31771
Number of sequences better than 1.0e-10: 24
Number of HSP's better than 0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31502
Number of HSP's gapped (non-prelim): 25
length of query: 773
length of database: 189,106,746
effective HSP length: 56
effective length of query: 717
effective length of database: 155,591,474
effective search space: 111559086858
effective search space used: 111559086858
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 169 (70.2 bits)