BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1561 (PAB1561) DE:DNA helicase, putative
(653 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75105 probable DNA helicas PAB1561 - Pyrococcus abyssi (st... 1279 0.0
pir||E71080 probable DNA-binding protein - Pyrococcus horikoshii... 1116 0.0
pir||G72429 hypothetical protein TM0005 - Thermotoga maritima (s... 792 0.0
gi|11498984 DNA helicase, putative [Archaeoglobus fulgidus] >gi|... 737 0.0
pir||D69085 transcription control factor enhancer-binding protei... 687 0.0
sp|Q57568|Y104_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0104 >gi... 540 e-152
pir||D70476 DNA helicase - Aquifex aeolicus >gi|2984278|gb|AAC07... 461 e-129
pir||T02699 hypothetical protein T18E12.6 - Arabidopsis thaliana... 352 6e-96
emb|CAC16347.1| (AJ300306) putative helicase [Arabidopsis thaliana] 351 1e-95
gb|AAG28561.1|AF199411_1 (AF199411) antifreeze-enhancer binding ... 300 3e-80
gi|4504623 immunoglobulin mu binding protein 2 [Homo sapiens] >g... 299 7e-80
pir||A47500 Ig mu chain switch region binding protein 2 - human 299 7e-80
gi|11435569 immunoglobulin mu binding protein 2 [Homo sapiens] 298 2e-79
sp|Q60560|SMB2_MESAU DNA-BINDING PROTEIN SMUBP-2 (IMMUNOGLOBULIN... 296 5e-79
gb|AAA70430.1| (L24544) DNA helicase [Homo sapiens] 295 8e-79
gi|6678029 immunoglobulin S mu binding protein 2 [Mus musculus] ... 294 1e-78
pir||T41580 probable dna-binding protein - fission yeast (Schiz... 262 1e-68
gi|6322835 DNA helicase A; Hcs1p [Saccharomyces cerevisiae] >gi|... 230 3e-59
dbj|BAB09253.1| (AB026643) DNA helicase-like [Arabidopsis thaliana] 219 6e-56
pir||D72258 helicase-related protein - Thermotoga maritima (stra... 215 9e-55
emb|CAC18314.1| (AL451022) probable HUPF1 protein [Neurospora cr... 215 2e-54
pir||T43280 nonsense-mediated mRNA decay trans-acting factor - C... 206 6e-52
gi|6323726 putative helicase; Nam7p [Saccharomyces cerevisiae] >... 202 1e-50
dbj|BAB10240.1| (AB013394) prematurely terminated mRNA decay fac... 200 3e-50
pir||T40065 tRNA-splicing endonuclease positive effector - fissi... 197 3e-49
gb|AAB94785.1| (AC003972) pNORF1 [Homo sapiens] >gi|3328175|gb|A... 192 7e-48
gb|AAC51140.1| (U59323) type 1 RNA helicase pNORF1 [Homo sapiens] 192 7e-48
dbj|BAA19664.1| (D86988) KIAA0221 [Homo sapiens] 192 7e-48
sp|Q09820|YAC6_SCHPO HYPOTHETICAL 105.6 KD PROTEIN C16C9.06C IN ... 191 2e-47
pir||T37779 probable regulator of nonsense transcript stability ... 191 2e-47
gi|11426635 regulator of nonsense transcripts 1 [Homo sapiens] 190 4e-47
gi|4506479 regulator of nonsense transcripts 1 [Homo sapiens] >g... 190 5e-47
sp|Q92355|YDHA_SCHPO HYPOTHETICAL 192.5 KD PROTEIN C6G9.10C IN C... 184 3e-45
emb|CAC10094.1| (AL442164) related to SEN1 protein [Neurospora c... 174 2e-42
gb|AAB63976.1| (M74589) SEN1 [Saccharomyces cerevisiae] 167 3e-40
gi|6323462 component of a nuclear-localized tRNA splicing comple... 167 3e-40
gb|AAG19799.1| (AE005064) DNA helicase; Hel [Halobacterium sp. N... 167 4e-40
gi|6321024 DNA Helicase I; Ecm32p [Saccharomyces cerevisiae] >gi... 161 3e-38
pir||T39568 hypothetical helicase - fission yeast (Schizosacchar... 159 1e-37
pir||T51292 Dna2p - fission yeast (Schizosaccharomyces pombe) >g... 159 1e-37
gb|AAF99770.1|AC003981_20 (AC003981) F22O13.33 [Arabidopsis thal... 158 2e-37
sp|P51530|Y083_HUMAN HYPOTHETICAL PROTEIN KIAA0083 >gi|11360302|... 158 2e-37
pir||T08986 hypothetical protein F6G3.130 - Arabidopsis thaliana... 157 5e-37
pir||T26415 hypothetical protein Y106G6D.5 - Caenorhabditis eleg... 153 5e-36
pir||T00533 SEN1 protein homolog T20K24.14 - Arabidopsis thalian... 152 2e-35
dbj|BAA31600.1| (AB014525) KIAA0625 protein [Homo sapiens] 148 2e-34
gi|7662212 KIAA0625 protein [Homo sapiens] >gi|7022724|dbj|BAA91... 148 2e-34
gi|11429653 KIAA0625 protein [Homo sapiens] 148 2e-34
gb|AAG20303.1| (AE005104) DNA binding protein eukaryotic-like; D... 147 4e-34
gb|AAF23837.1|AC007234_9 (AC007234) F1E22.14 [Arabidopsis thaliana] 142 1e-32
gb|AAG09081.1|AC026237_2 (AC026237) Similar to tRNA-splicing end... 138 1e-31
gb|AAF50482.1| (AE003556) CG7504 gene product [Drosophila melano... 137 3e-31
pir||T28788 hypothetical protein C41D11.7 - Caenorhabditis elega... 136 1e-30
dbj|BAB11057.1| (AB015478) contains similarity to nonsense-media... 135 1e-30
gb|AAF57908.1| (AE003804) CG6967 gene product [Drosophila melano... 134 2e-30
gi|6321958 DNA replication helicase; Dna2p [Saccharomyces cerevi... 134 3e-30
dbj|BAB11372.1| (AB017068) contains similarity to nonsense-media... 131 2e-29
gb|AAB67523.1| (U21094) Sen1p [Saccharomyces cerevisiae] 131 3e-29
pir||T22132 hypothetical protein F43G6.1a - Caenorhabditis elega... 131 3e-29
pir||T22138 hypothetical protein F43G6.1b - Caenorhabditis elega... 131 3e-29
gi|11499542 DNA helicase, putative [Archaeoglobus fulgidus] >gi|... 130 4e-29
dbj|BAB11370.1| (AB017068) contains similarity to nonsense-media... 127 4e-28
pir||T00740 hypothetical protein F22O13.35 - Arabidopsis thaliana 125 1e-27
dbj|BAB08973.1| (AB024026) gb|AAD48967.1~gene_id:K15O15.6~strong... 122 1e-26
dbj|BAB11373.1| (AB017068) contains similarity to DNA helicase~g... 122 1e-26
gb|AAD48967.1|AF147263_9 (AF147263) contains similarity to nonse... 122 2e-26
gb|AAF23836.1|AC007234_8 (AC007234) F1E22.16 [Arabidopsis thaliana] 122 2e-26
gb|AAF46543.1| (AE003449) CG2990 gene product [Drosophila melano... 120 4e-26
gb|AAF56255.1| (AE003746) CG6204 gene product [Drosophila melano... 115 2e-24
gb|AAA58611.1| (M64979) glial factor-1 [Homo sapiens] 115 2e-24
pir||A70369 hypothetical protein aq_791 - Aquifex aeolicus >gi|2... 112 1e-23
pir||D64588 probable DNA helicase - Helicobacter pylori (strain ... 109 9e-23
pir||T41111 hypothetical ATP binding protein - fission yeast (S... 101 2e-20
gb|AAF79736.1|AC005106_17 (AC005106) T25N20.11 [Arabidopsis thal... 99 1e-19
gb|AAF58307.1| (AE003816) CG6701 gene product [Drosophila melano... 96 9e-19
dbj|BAA92642.1| (AB037825) KIAA1404 protein [Homo sapiens] 95 2e-18
dbj|BAB14696.1| (AK023836) unnamed protein product [Homo sapiens] 95 2e-18
pir||T42668 hypothetical protein DKFZp434B0717.1 - human (fragme... 95 3e-18
pir||T47242 DNA helicase homolog - fission yeast (Schizosaccharo... 93 8e-18
gb|AAF47775.1| (AE003478) CG11513 gene product [Drosophila melan... 92 2e-17
gi|6678920 Moloney leukemia virus 10 [Mus musculus] >gi|127560|s... 92 2e-17
dbj|BAB13457.1| (AB046851) KIAA1631 protein [Homo sapiens] 90 5e-17
emb|CAB63041.1| (AL022328) dJ402G11.8 (novel protein similar to ... 90 7e-17
dbj|BAA90895.1| (AK000033) unnamed protein product [Homo sapiens] 88 3e-16
emb|CAC15527.1| (AL121829) dJ697K14.7 (putative novel protein) [... 85 2e-15
pir||G64575 conserved hypothetical protein HP0447 - Helicobacter... 84 4e-15
pir||B75198 DNA helicase related protein PAB0067 - Pyrococcus ab... 83 9e-15
emb|CAB60444.1| (AL132853) cDNA EST yk10h1.5 comes from this gen... 83 1e-14
pir||T46441 hypothetical protein DKFZp434C0927.1 - human >gi|680... 83 1e-14
pir||T27684 hypothetical protein ZK1067.2 - Caenorhabditis elega... 82 3e-14
pir||T23039 hypothetical protein H03G16.3 - Caenorhabditis elega... 81 3e-14
gb|AAF54715.1| (AE003693) CG14730 gene product [Drosophila melan... 81 4e-14
emb|CAB65628.1| (AL049766) dJ686N3.2 (novel protein similar to p... 78 2e-13
pir||T29386 hypothetical protein K08D10.5 - Caenorhabditis elega... 77 7e-13
sp|Q09449|YQ12_CAEEL HYPOTHETICAL 175.7 KD PROTEIN C05C10.2 IN C... 73 1e-11
pir||T23869 hypothetical protein R03D7.2 - Caenorhabditis elegan... 72 2e-11
pir||S75309 hypothetical protein sll1582 - Synechocystis sp. (st... 72 2e-11
dbj|BAB14299.1| (AK022902) unnamed protein product [Homo sapiens] 72 2e-11
>pir||B75105 probable DNA helicas PAB1561 - Pyrococcus abyssi (strain Orsay)
>gi|5458655|emb|CAB50143.1| (AJ248286) DNA helicase,
putative [Pyrococcus abyssi]
Length = 653
Score = 1279 bits (3274), Expect = 0.0
Identities = 653/653 (100%), Positives = 653/653 (100%)
Query: 1 MNITSFINRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEELGYFL 60
MNITSFINRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEELGYFL
Sbjct: 1 MNITSFINRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEELGYFL 60
Query: 61 VKYGRNREIKTEISVGDLVVISKRDPLKSDLLGTVVEKGKRFIVVALETVPEWALRDVRI 120
VKYGRNREIKTEISVGDLVVISKRDPLKSDLLGTVVEKGKRFIVVALETVPEWALRDVRI
Sbjct: 61 VKYGRNREIKTEISVGDLVVISKRDPLKSDLLGTVVEKGKRFIVVALETVPEWALRDVRI 120
Query: 121 DLYANDITFRRWLENLNTIKKAGKRALRFYLGLDEPSQGEEVNFVPFDKSLNRSQRKAIS 180
DLYANDITFRRWLENLNTIKKAGKRALRFYLGLDEPSQGEEVNFVPFDKSLNRSQRKAIS
Sbjct: 121 DLYANDITFRRWLENLNTIKKAGKRALRFYLGLDEPSQGEEVNFVPFDKSLNRSQRKAIS 180
Query: 181 KALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLATAESNVAVDNLVERLSRSGIK 240
KALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLATAESNVAVDNLVERLSRSGIK
Sbjct: 181 KALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLATAESNVAVDNLVERLSRSGIK 240
Query: 241 IVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGL 300
IVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGL
Sbjct: 241 IVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGL 300
Query: 301 SDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEERIARDIIREADV 360
SDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEERIARDIIREADV
Sbjct: 301 SDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEERIARDIIREADV 360
Query: 361 VLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNKVERFVLAGDHKQLPPTILSL 420
VLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNKVERFVLAGDHKQLPPTILSL
Sbjct: 361 VLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNKVERFVLAGDHKQLPPTILSL 420
Query: 421 EAQELSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRD 480
EAQELSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRD
Sbjct: 421 EAQELSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRD 480
Query: 481 LVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLL 540
LVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLL
Sbjct: 481 LVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLL 540
Query: 541 SIGVKPEWIGVITPYDDQRDLISMKVPEDVEVKTVDGYQGREKEVIILSLVRSNKLGEIG 600
SIGVKPEWIGVITPYDDQRDLISMKVPEDVEVKTVDGYQGREKEVIILSLVRSNKLGEIG
Sbjct: 541 SIGVKPEWIGVITPYDDQRDLISMKVPEDVEVKTVDGYQGREKEVIILSLVRSNKLGEIG 600
Query: 601 FLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFFKEKGCFIEFPFS 653
FLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFFKEKGCFIEFPFS
Sbjct: 601 FLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFFKEKGCFIEFPFS 653
>pir||E71080 probable DNA-binding protein - Pyrococcus horikoshii
>gi|3257320|dbj|BAA30003.1| (AP000004) 656aa long
hypothetical DNA-binding protein [Pyrococcus horikoshii]
Length = 656
Score = 1116 bits (2855), Expect = 0.0
Identities = 563/648 (86%), Positives = 605/648 (92%)
Query: 1 MNITSFINRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEELGYFL 60
MNI SFINRLKELVEIE+EAEIEAMRLEM+RLSG+ERERLGRAILNLNGKI GEELGYFL
Sbjct: 1 MNIKSFINRLKELVEIEKEAEIEAMRLEMKRLSGVERERLGRAILNLNGKIAGEELGYFL 60
Query: 61 VKYGRNREIKTEISVGDLVVISKRDPLKSDLLGTVVEKGKRFIVVALETVPEWALRDVRI 120
VKYGRNREIKTEISVGDLVVISKRDPLKSDLLGTVVEKGKRFIVVALETVPEWALRDVRI
Sbjct: 61 VKYGRNREIKTEISVGDLVVISKRDPLKSDLLGTVVEKGKRFIVVALETVPEWALRDVRI 120
Query: 121 DLYANDITFRRWLENLNTIKKAGKRALRFYLGLDEPSQGEEVNFVPFDKSLNRSQRKAIS 180
DLYANDITFRRWLENL+ +KKAGKRAL FYLGLDEPSQGEEV+F PFDKSLN SQRKAI+
Sbjct: 121 DLYANDITFRRWLENLDRVKKAGKRALEFYLGLDEPSQGEEVSFEPFDKSLNSSQRKAIA 180
Query: 181 KALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLATAESNVAVDNLVERLSRSGIK 240
K LGSEDFFL+HGPFGTGKTRTLVELIRQEVKRGNKVLATAESNVAVDNLVERL++ G+K
Sbjct: 181 KGLGSEDFFLIHGPFGTGKTRTLVELIRQEVKRGNKVLATAESNVAVDNLVERLAKDGVK 240
Query: 241 IVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGL 300
IVR+GHPSRVS+HLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGL
Sbjct: 241 IVRVGHPSRVSRHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGL 300
Query: 301 SDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEERIARDIIREADV 360
SD EIIKLAER+RG RGLSARLI EMAEWIKLNRQVQKAF+DARKLEERIARDIIREADV
Sbjct: 301 SDAEIIKLAERRRGIRGLSARLIKEMAEWIKLNRQVQKAFEDARKLEERIARDIIREADV 360
Query: 361 VLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNKVERFVLAGDHKQLPPTILSL 420
+LTTNSSAALEVVD YDVAIIDEATQ+TIPSILIPLNKV+RF+LAGDHKQLPPTILSL
Sbjct: 361 ILTTNSSAALEVVDATDYDVAIIDEATQATIPSILIPLNKVDRFILAGDHKQLPPTILSL 420
Query: 421 EAQELSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRD 480
EAQELS TLFEGLIERYPWKSEML +QYRMNERIMEFPSKEFY G+I+ADE V+ ITL D
Sbjct: 421 EAQELSHTLFEGLIERYPWKSEMLTIQYRMNERIMEFPSKEFYDGRIVADERVKNITLGD 480
Query: 481 LVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLL 540
L + W IL+P NV+VFIDT +N++ERQRRGSESRENPLEA+IV+KIV+KLL
Sbjct: 481 LGIKVNATGIWRDILDPSNVLVFIDTCMLDNRFERQRRGSESRENPLEAKIVSKIVEKLL 540
Query: 541 SIGVKPEWIGVITPYDDQRDLISMKVPEDVEVKTVDGYQGREKEVIILSLVRSNKLGEIG 600
GVK E IGVITPYDDQRDLIS+ VPE+VEVKTVDGYQGREKEVIILS VRSNK+GEIG
Sbjct: 541 ESGVKAEMIGVITPYDDQRDLISLNVPEEVEVKTVDGYQGREKEVIILSFVRSNKVGEIG 600
Query: 601 FLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFFKEKGCFI 648
FLKDLRRLNVSLTRAKRKLI++GDSSTLSSHETYK++IE +EKG ++
Sbjct: 601 FLKDLRRLNVSLTRAKRKLIMIGDSSTLSSHETYKRLIEHVREKGLYV 648
>pir||G72429 hypothetical protein TM0005 - Thermotoga maritima (strain MSB8)
>gi|4980488|gb|AAD35099.1|AE001689_5 (AE001689) DNA
helicase, putative [Thermotoga maritima]
Length = 650
Score = 792 bits (2022), Expect = 0.0
Identities = 405/651 (62%), Positives = 508/651 (77%), Gaps = 2/651 (0%)
Query: 1 MNITSFINRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEELGYFL 60
M + FI +L LVE+ER AEI AM EM+RLSG ERE+ GRA+L L GK IGEELGYFL
Sbjct: 1 MTVQQFIKKLVRLVELERNAEINAMLDEMKRLSGEEREKKGRAVLGLTGKFIGEELGYFL 60
Query: 61 VKYGRNREIKTEISVGDLVVISKRDPLKSDLLGTVVEKGKRFIVVALETVPEWALRDVRI 120
V++GR ++I TEI VGDLV+ISK +PLKSD GTVVEKG+RFI VA++ +P W L++VRI
Sbjct: 61 VRFGRRKKIDTEIGVGDLVLISKGNPLKSDYTGTVVEKGERFITVAVDRLPSWKLKNVRI 120
Query: 121 DLYANDITFRRWLENLNTIKKAGKRALRFYLGLDEPSQGEEVNFVPFDKSLNRSQRKAIS 180
DL+A+DITFRR +ENL T+ GK+AL F LG +P + E F PFD+ LN SQR+A+S
Sbjct: 121 DLFASDITFRRQIENLMTLSSEGKKALEFLLGKRKPEESFEEEFTPFDEGLNESQREAVS 180
Query: 181 KALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLATAESNVAVDNLVERLSRSGIK 240
ALGS DFFL+HGPFGTGKTRTLVE IRQEV RG K+L TAESN+AVDNLVERL +
Sbjct: 181 LALGSSDFFLIHGPFGTGKTRTLVEYIRQEVARGKKILVTAESNLAVDNLVERL-WGKVS 239
Query: 241 IVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGL 300
+VRIGHPSRVS HL E+TLA+ I Y ++++++ L +KRD++TKP+P++RRGL
Sbjct: 240 LVRIGHPSRVSSHLKESTLAHQIETSSEYEKVKKMKEELAKLIKKRDSFTKPSPQWRRGL 299
Query: 301 SDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEERIARDIIREADV 360
SD++I++ AE+ ARG+S I EMAEWIKLN Q+Q D + EE IA I+REA V
Sbjct: 300 SDKKILEYAEKNWSARGVSKEKIKEMAEWIKLNSQIQDIRDLIERKEEIIASRIVREAQV 359
Query: 361 VLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNKVERFVLAGDHKQLPPTILSL 420
VL+TNSSAALE++ +DV ++DEA+Q+TIPSILIP++K ++FVLAGDHKQLPPTILS
Sbjct: 360 VLSTNSSAALEILSGIVFDVVVVDEASQATIPSILIPISKGKKFVLAGDHKQLPPTILSE 419
Query: 421 EAQELSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRD 480
+A++LSRTLFE LI RYP KS +L QYRMNE +MEFPS+EFY GK+ A E VR ITL D
Sbjct: 420 DAKDLSRTLFEELITRYPEKSSLLDTQYRMNELLMEFPSEEFYDGKLKAAEKVRNITLFD 479
Query: 481 L-VEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKL 539
L VE + W +L+P+NV+VFIDT +++ERQR+ S SRENPLEA+IV ++V+KL
Sbjct: 480 LGVEIPNFGKFWDVVLSPKNVLVFIDTKNRSDRFERQRKDSPSRENPLEAQIVKEVVEKL 539
Query: 540 LSIGVKPEWIGVITPYDDQRDLISMKVPEDVEVKTVDGYQGREKEVIILSLVRSNKLGEI 599
LS+GVK +WIG+ITPYDDQ +LI + VEV +VDG+QGREKEVII+S VRSNK GEI
Sbjct: 540 LSMGVKEDWIGIITPYDDQVNLIRELIEAKVEVHSVDGFQGREKEVIIISFVRSNKNGEI 599
Query: 600 GFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFFKEKGCFIEF 650
GFL+DLRRLNVSLTRAKRKLI GDSSTLS H TY++ +EF K+KG ++ F
Sbjct: 600 GFLEDLRRLNVSLTRAKRKLIATGDSSTLSVHPTYRRFVEFVKKKGTYVIF 650
>gi|11498984 DNA helicase, putative [Archaeoglobus fulgidus]
>gi|7446666|pir||C69423 DNA helicase homolog -
Archaeoglobus fulgidus >gi|2649188|gb|AAB89860.1|
(AE001009) DNA helicase, putative [Archaeoglobus
fulgidus]
Length = 648
Score = 737 bits (1881), Expect = 0.0
Identities = 379/644 (58%), Positives = 498/644 (76%), Gaps = 12/644 (1%)
Query: 6 FINRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEELGYFLVKYGR 65
FI L L E+ER+A+I AM E+RRLSG +RER GRA+L L GK++GEELG+ LV+YGR
Sbjct: 4 FIEGLIRLTEVERDAQISAMMDEIRRLSGEKRERKGRAVLGLRGKVVGEELGFKLVRYGR 63
Query: 66 NREIKTEISVGDLVVISKRDPLKSDLLGTVVEKGKRFIVVALETVPEWALRDVRIDLYAN 125
+ I+TEISVGD V+IS+ DPLKSDL G VVEKG R++ V+LE+VPEWALRDVRIDLYA+
Sbjct: 64 RKAIETEISVGDEVLISRGDPLKSDLRGVVVEKGSRYLTVSLESVPEWALRDVRIDLYAS 123
Query: 126 DITFRRWLENLNTIKKAGKRALRFYLGLDEPSQGEEVNFVPFDKSLNRSQRKAISKALGS 185
D+TF+RW+ENL + + GKRAL+F LGL+EPS+ E +F PFD SLNR+Q KA+ A+ +
Sbjct: 124 DLTFKRWIENLENLTENGKRALKFALGLEEPSKTECEDFKPFDSSLNRAQLKAVGCAVST 183
Query: 186 EDFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLATAESNVAVDNLVERLSRSGIKIVRIG 245
+DFFL+HGPFGTGKTRT+VE++RQ VKRG +VL TAESN AVDNLVE L S +KIVR+G
Sbjct: 184 DDFFLIHGPFGTGKTRTVVEVVRQLVKRGERVLVTAESNTAVDNLVELL--SDMKIVRLG 241
Query: 246 HPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGLSDEEI 305
HPSRV K L E TLA L+ H Y + E++ + + + + TKP+P+ RRGLSDEEI
Sbjct: 242 HPSRVEKRLKEHTLASLVLNHPDYKRIEEIKGKIEEIERRMERLTKPSPQLRRGLSDEEI 301
Query: 306 IKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEERIARDIIREADVVLTTN 365
++LA RGARG++A+ I MAEWI+ + + + + + ++ EERI ++II E+DVV++TN
Sbjct: 302 LRLARSNRGARGVAAKKIRSMAEWIEARKALDQLYTEMKEEEERIVKEIIEESDVVISTN 361
Query: 366 SSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNKVERFVLAGDHKQLPPTILSLEAQEL 425
SSA L +++D A+IDEA+Q+TIPS+LIP+N+ +F+LAGDH+QLPPT+ ++A++L
Sbjct: 362 SSAFLL---EESFDTAVIDEASQATIPSVLIPINRARKFILAGDHRQLPPTV--MKAEKL 416
Query: 426 SRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQ 485
S TLFE LIE YP KS++L VQYRMNE++MEFPS+EFYGG+I+A ES I L + + +
Sbjct: 417 SETLFEKLIELYPEKSQLLNVQYRMNEKLMEFPSREFYGGRIVAHESCTAIALSQIAKRE 476
Query: 486 SPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVK 545
+ + +IL E +VFIDTSK +N+WE + S SR N LEAEIV +IV +LL +G+K
Sbjct: 477 A--EKLREILGDE-PLVFIDTSKCKNRWEGKLADSTSRYNRLEAEIVTEIVTELLKMGLK 533
Query: 546 PEWIGVITPYDDQRDLISMKVPEDVEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDL 605
E IGVITPYDDQ DL+ KV DVEV +VDG+QGREKEVII+S VRSN+ EIGFL DL
Sbjct: 534 KEQIGVITPYDDQVDLLREKV--DVEVSSVDGFQGREKEVIIISFVRSNRKREIGFLDDL 591
Query: 606 RRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFFKEKGCFIE 649
RRLNVSLTRA+RKLI+VGDS TLS + TY ++I+ K KG ++E
Sbjct: 592 RRLNVSLTRARRKLIMVGDSETLSVNGTYARLIDHVKRKGVYVE 635
>pir||D69085 transcription control factor enhancer-binding protein -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622761|gb|AAB86107.1| (AE000922) transcriptional
control factor (enhancer-binding protein)
[Methanobacterium thermoautotrophicum]
Length = 642
Score = 687 bits (1754), Expect = 0.0
Identities = 363/631 (57%), Positives = 472/631 (74%), Gaps = 6/631 (0%)
Query: 16 IEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEELGYFLVKYGRNREIKTEISV 75
+EREAEI AM E+RRLS +RER RA+ LNGKI G ELG+ LVKYGR I T+ISV
Sbjct: 1 MEREAEISAMMNEIRRLSPRQRERARRAVNGLNGKITGRELGFHLVKYGRRDPIDTQISV 60
Query: 76 GDLVVISKRDPLKSDLLGTVVEKGKRFIVVALETVPEWALRDVRIDLYANDITFRRWLEN 135
GDLV+IS+ +PL+SDL GTV KGKRF+VVALE VP WAL++VRIDLYAND+TF+R ++N
Sbjct: 61 GDLVLISRGNPLRSDLTGTVAMKGKRFLVVALEHVPGWALKNVRIDLYANDVTFQRMIDN 120
Query: 136 LNTIKKAGKRALRFYLGLDEPSQGEEV-NFVPFDKSLNRSQRKAISKALGSEDFFLVHGP 194
L + + R L F G ++PS G +V +F D LN SQR AI ALGSEDFFL+HGP
Sbjct: 121 LKSPTRNVLRVLGFLCGTEKPSDGVDVVDFQAVDPELNESQRDAIRMALGSEDFFLIHGP 180
Query: 195 FGTGKTRTLVELIRQEVKRGNKVLATAESNVAVDNLVERLSRSGIKIVRIGHPSRVSKHL 254
FGTGKTRTL ELIRQEV RG++VL TAESN AVDNL+E ++ +K VR+GHP RVS+
Sbjct: 181 FGTGKTRTLHELIRQEVMRGSRVLVTAESNAAVDNLLEGIA-GHVKCVRLGHPQRVSREN 239
Query: 255 HETTLAYLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGLSDEEIIKLAERKRG 314
TLAY I H Y ++RE + L E+R+ + KPTP+ RRGLSD +I+ A ++RG
Sbjct: 240 LRETLAYKIENHPEYSKVREYQEKIDELIEERERHQKPTPQIRRGLSDTQILINATKRRG 299
Query: 315 ARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEERIARDIIREADVVLTTNSSAALEVVD 374
ARG+S +++ MA WI+ N+++ ++ E RIA I+RE+ VVL+TNSSAALE +D
Sbjct: 300 ARGISPNVMISMARWIETNQRIDDLHSKLQEAEMRIADRILRESQVVLSTNSSAALEYID 359
Query: 375 YDTYDVAIIDEATQSTIPSILIPLNKVERFVLAGDHKQLPPTILSLEAQELSRTLFEGLI 434
+DVAI+DEA+Q+TIPSILIPL + RF+LAGDH+QLPPTILS +A EL RTLFE LI
Sbjct: 360 GLRFDVAIVDEASQATIPSILIPLARAPRFILAGDHRQLPPTILSRDASELERTLFEELI 419
Query: 435 ERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKI 494
+R+P +S ML QYRM+ IMEFP++EFY G+I A S+ I++RD++E +D K+
Sbjct: 420 KRHPGRSRMLNCQYRMHPAIMEFPNREFYDGRIRAHPSLEDISIRDIIEDVPDSDICQKL 479
Query: 495 LNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITP 554
+P+ V+ FIDTS + ER+ +GS S +NPLEA++ I L+ +GVKPE IG+ITP
Sbjct: 480 ADPDPVL-FIDTSGLDG-CERRLKGSTSIQNPLEADLAVIISRSLMRMGVKPEEIGIITP 537
Query: 555 YDDQRDLISMKVPEDVEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTR 614
YDDQ DLIS + DVEV +VDG+QGREK+VII+S+VRSN+ G IGFLKDLRRLNVSLTR
Sbjct: 538 YDDQVDLISSMI--DVEVNSVDGFQGREKDVIIISMVRSNRNGSIGFLKDLRRLNVSLTR 595
Query: 615 AKRKLIVVGDSSTLSSHETYKKMIEFFKEKG 645
A+RKLI++GDS TLS+H +Y+++ EF +++G
Sbjct: 596 ARRKLIIIGDSRTLSAHPSYRRLTEFCRKRG 626
>sp|Q57568|Y104_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0104 >gi|2129217|pir||H64312
probable DNA helicase MJ0104 - Methanococcus jannaschii
>gi|1590880|gb|AAB98084.1| (U67467) DNA-binding protein,
probably DNA helicase [Methanococcus jannaschii]
Length = 663
Score = 540 bits (1377), Expect = e-152
Identities = 298/647 (46%), Positives = 435/647 (67%), Gaps = 23/647 (3%)
Query: 6 FINRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEELGYFLVKYGR 65
++ + +L+EIER E++ + E+ +L G +RE +GRAILNL GK +GE LG +V++GR
Sbjct: 17 YVKKFMDLIEIERRCEMDFHKNEIIKL-GKKRENVGRAILNLKGKFLGESLGCTIVRFGR 75
Query: 66 NREIKTEISVGDLVVISKRDPLKSDLLGTVVEKGKRFIVVALET-VPEWALRD-VRIDLY 123
+ KTEIS GD+V++SK +PL+SDL V+ GK FI VA + VP+W ++ VR+DLY
Sbjct: 76 KKPFKTEISPGDVVLVSKENPLQSDLYANVIYVGKNFIDVAFDVDVPKWVYKERVRVDLY 135
Query: 124 ANDITFRRWLENLNTIKKAGKRALRFYLGLDEPSQG--EEVNFVPFDKSLNRSQRKAISK 181
NDITF+R E L + + LG++ P + E++ +DK+LN SQ+ A+ K
Sbjct: 136 VNDITFKRMKEALREFARKRDKLAYIILGIEHPEKPLREDIKLEFYDKNLNESQKLAVKK 195
Query: 182 ALGSEDFFLVHGPFGTGKTRTLVELIRQEVK-RGNKVLATAESNVAVDNLVERLSRS--G 238
A+ S D +L+HGP GTGKTRT+ E+I QEVK +KVLATA+SN+A DN++E L +
Sbjct: 196 AVLSRDLYLIHGPPGTGKTRTITEVIVQEVKFNKHKVLATADSNIAADNILEYLIKKYPD 255
Query: 239 IKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRR 298
+K+VR+GHP+R+SK L + +L YLI HE Y E+ LR + + E+RD + KP+P++RR
Sbjct: 256 LKVVRVGHPTRISKDLIQHSLPYLIENHEKYQEILALREKIKEIKEQRDKFLKPSPRWRR 315
Query: 299 GLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEERIARDIIREA 358
G+SDE+I+K+A+RK+ RG+ I+ MAEWI N+++++ ++ ++ E+I +I+ EA
Sbjct: 316 GMSDEQILKVAKRKKSYRGIPKEKIVSMAEWIIRNKKIKRIINNLDEITEKIMNEILAEA 375
Query: 359 DVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNKVERFVLAGDHKQLPPTIL 418
DV++ TNS A E++ +DV +IDE +Q+ PS LIP+ K + ++AGDHKQLPPT+L
Sbjct: 376 DVIVATNSMAGSEILKGWEFDVIVIDEGSQAMEPSCLIPIVKGRKLIMAGDHKQLPPTVL 435
Query: 419 SLEAQELSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITL 478
S E +EL +TLFE LI++YP S +L +QYRMNE+IMEFP+K FY K+ ADESV+ ITL
Sbjct: 436 S-ENEELKKTLFERLIKKYPEFSSILEIQYRMNEKIMEFPNKMFYNNKLKADESVKNITL 494
Query: 479 RDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDK 538
DLV+ + ++ I+N E + FI+ ER+ + S S N EAE V +IV K
Sbjct: 495 LDLVKEEEIDEVDRDIIN-EIPVQFINVEGI----ERKDKESPSYYNIEEAEKVLEIVKK 549
Query: 539 LLSIGVKPEWIGVITPYDDQRDLISMKVPE---DVEVKTVDGYQGREKEVIILSLVRSNK 595
L+ + VITPYD Q + E D+EV TVDG+QGRE E I++S VR+
Sbjct: 550 LVKYKIP---TNVITPYDAQVRYLRRLFEEHNIDIEVNTVDGFQGRENEAIVISFVRTK- 605
Query: 596 LGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFFK 642
GFLKDLRRLNV++TRAKRKLI++G+ + L + Y +MI++ K
Sbjct: 606 --NFGFLKDLRRLNVAITRAKRKLILIGNENLLKQDKVYNEMIKWAK 650
>pir||D70476 DNA helicase - Aquifex aeolicus >gi|2984278|gb|AAC07803.1|
(AE000770) DNA helicase [Aquifex aeolicus]
Length = 530
Score = 461 bits (1174), Expect = e-129
Identities = 251/484 (51%), Positives = 342/484 (69%), Gaps = 10/484 (2%)
Query: 171 LNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLATAESNVAVDNL 230
LN Q+KA+ +AL +E FL+HGP GTGKT TLVE I++ + G KVLATA+SNVAVDNL
Sbjct: 49 LNAYQKKAVERALKAEKVFLIHGPPGTGKTTTLVECIKRLAQEGYKVLATADSNVAVDNL 108
Query: 231 VERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYT 290
VERL R +K+VR+G+P RV K + TL YL+ + + R++ +L E++ Y
Sbjct: 109 VERLVRENVKVVRVGNPVRVLKTIQRHTLDYLVQFEPEFDKARKIYEEIDNLKEEQKKYV 168
Query: 291 KPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEERI 350
KP P++RRGLSDEEI+K A+ RGLS +++ MA+WIKL +V++ ++ A+K EE+
Sbjct: 169 KPEPRYRRGLSDEEILKRAKTGTPVRGLSPKILRSMAKWIKLQEKVKELYEKAKKEEEKA 228
Query: 351 ARDIIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNKVERFVLAGDH 410
I+ A VV TTNS+A EV+ +DV IIDEATQ+T PS LIPL K ++ ++AGDH
Sbjct: 229 VNKILSRAQVVCTTNSTAGSEVLQNLNFDVVIIDEATQATEPSCLIPLIKGKKLIMAGDH 288
Query: 411 KQLPPTILSLEAQE-LSRTLFEGLIERYPWK-SEMLVVQYRMNERIMEFPSKEFYGGKII 468
KQLPPT+LS EAQE LS TLFE L++ Y + E+L +QYRMN++IMEF +K FY GK+I
Sbjct: 289 KQLPPTVLSQEAQEALSYTLFERLLDLYGEEIYEILRIQYRMNKKIMEFSNKMFYEGKLI 348
Query: 469 ADESVRGITLRDLV---EYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESREN 525
AD+SV T++DL+ + + + + +L PE V+VFI+ E+QRRGS S N
Sbjct: 349 ADKSVENHTIKDLINPEKLKEIPEPFKSVLEPEKVVVFINVRGK----EKQRRGSTSFYN 404
Query: 526 PLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISMKVPE-DVEVKTVDGYQGREKE 584
EA++ KIV+ L+ IG++ E IGVI+PY+DQ + + + + +VEVKTVDG+QGREKE
Sbjct: 405 EEEAKVAVKIVEYLMKIGLRSEHIGVISPYEDQVNFLEELLKDFEVEVKTVDGFQGREKE 464
Query: 585 VIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFFKEK 644
VII+S VRSN+ GEIGFLKD RRLNV+LTRA+RKLI +G+ TLSS E YK+ I + K
Sbjct: 465 VIIISFVRSNEKGEIGFLKDYRRLNVALTRARRKLITLGNEKTLSSDEVYKQFIGYVKSI 524
Query: 645 GCFI 648
G +I
Sbjct: 525 GGYI 528
>pir||T02699 hypothetical protein T18E12.6 - Arabidopsis thaliana
>gi|4335770|gb|AAD17447.1| (AC006284) putative helicase
[Arabidopsis thaliana]
Length = 635
Score = 352 bits (894), Expect = 6e-96
Identities = 249/672 (37%), Positives = 377/672 (56%), Gaps = 68/672 (10%)
Query: 1 MNITSFINRLKELVEIEREAEIEAMRLEMRRLSGIER-ERLGRAILNLNGKIIGEEL-GY 58
M++ +F++ + L+++E+EAEI +M L IE ++ G ILNL + L G
Sbjct: 1 MSLEAFVSTMAPLIDMEKEAEI-SMSLTSGASRNIETAQKKGTTILNLKCVDVQTGLMGK 59
Query: 59 FLVKYGRNR-EIKTEISVG--DLVVI--SKRDPLKSDLLGTVVEKGK-RFIVVALETVPE 112
L+++ N+ ++ G D+VV+ +K D S L VV + K I V + VPE
Sbjct: 60 SLIEFQSNKGDVLPAHKFGNHDVVVLKLNKSDLGSSPLAQGVVYRLKDSSITVVFDEVPE 119
Query: 113 WALR-DVRIDLYANDITFRRWLENLNTIKKAGKRA-----LRFYLGLDEPSQGEE--VNF 164
L +R++ AN++T+RR + L + K R + G +PS ++ +F
Sbjct: 120 EGLNTSLRLEKLANEVTYRRMKDTLIQLSKGVLRGPASDLVPVLFGERQPSVSKKDVKSF 179
Query: 165 VPFDKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLATAESN 224
PF+K+L++SQ+ AI+KAL S+D FL+HGP GTGKT T+VE++ QEVKRG+K+LA A SN
Sbjct: 180 TPFNKNLDQSQKDAITKALSSKDVFLLHGPPGTGKTTTVVEIVLQEVKRGSKILACAASN 239
Query: 225 VAVDNLVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAE 284
+AVDN+VERL +K+VR+GHP+R+ + ++ L + + + G ++R ++L
Sbjct: 240 IAVDNIVERLVPHKVKLVRVGHPARLLPQVLDSALDAQVLKGDNSGLANDIRKEMKALNG 299
Query: 285 KRDTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDAR 344
K K K R L +E+ L + + R
Sbjct: 300 K---LLKAKDKNTRRLIQKELRTLGK-------------------------------EER 325
Query: 345 KLEERIARDIIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNKVERF 404
K ++ D+I+ ADV+LTT + A +D T+D+ IIDE Q+ + I L K R
Sbjct: 326 KRQQLAVSDVIKNADVILTTLTGALTRKLDNRTFDLVIIDEGAQALEVACWIALLKGSRC 385
Query: 405 VLAGDHKQLPPTILSLEAQE--LSRTLFEGLIERYPWK-SEMLVVQYRMNERIMEFPSKE 461
+LAGDH QLPPTI S EA+ L RTLFE L + Y + ML VQYRM+E IM + SKE
Sbjct: 386 ILAGDHLQLPPTIQSAEAERKGLGRTLFERLADLYGDEIKSMLTVQYRMHELIMNWSSKE 445
Query: 462 FYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSE 521
Y KI A SV L DL ++ K + E ++ +DT+ + E ++ E
Sbjct: 446 LYDNKITAHSSVASHMLFDL-------ENVTKSSSTEATLLLVDTAGCD--MEEKKDEEE 496
Query: 522 SRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISM-----KVPEDVEVKTVD 576
S N EAE+ +L+ GV+P IG+ITPY Q L+ + + +D+E+ TVD
Sbjct: 497 STYNEGEAEVAMAHAKRLMESGVQPSDIGIITPYAAQVMLLRILRGKEEKLKDMEISTVD 556
Query: 577 GYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKK 636
G+QGREKE II+S+VRSN E+GFLKD RR+NV++TR++R+ +V D+ T+SS K+
Sbjct: 557 GFQGREKEAIIISMVRSNSKKEVGFLKDQRRMNVAVTRSRRQCCIVCDTETVSSDAFLKR 616
Query: 637 MIEFFKEKGCFI 648
MIE+F+E G ++
Sbjct: 617 MIEYFEEHGEYL 628
>emb|CAC16347.1| (AJ300306) putative helicase [Arabidopsis thaliana]
Length = 635
Score = 351 bits (891), Expect = 1e-95
Identities = 248/672 (36%), Positives = 375/672 (54%), Gaps = 68/672 (10%)
Query: 1 MNITSFINRLKELVEIEREAEIEAMRLEMRRLSGIER-ERLGRAILNLNGKIIGEEL-GY 58
M++ +F++ + L+++E+EAEI +M L IE ++ G ILNL + L G
Sbjct: 1 MSLEAFVSTMAPLIDMEKEAEI-SMSLTSGASRNIETAQKKGTTILNLKCVDVQTGLMGK 59
Query: 59 FLVKYGRNREIKT---EISVGDLVVI--SKRDPLKSDLLGTVVEKGK-RFIVVALETVPE 112
L+++ N+ + D+VV+ +K D S L VV + K I V + VPE
Sbjct: 60 SLIEFQSNKGDALPAHKFGNHDVVVLKLNKSDLGSSPLAQGVVYRLKDSSITVVFDEVPE 119
Query: 113 WALR-DVRIDLYANDITFRRWLENLNTIKKAGKRA-----LRFYLGLDEPSQGEE--VNF 164
L +R++ AN++T+RR + L + K R + G +PS ++ +F
Sbjct: 120 EGLNTSLRLEKLANEVTYRRMKDTLIQLSKGVLRGPASDLVPVLFGERQPSVSKKDVKSF 179
Query: 165 VPFDKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLATAESN 224
PF+K+L++SQ+ AI+KAL S+D FL+HGP GTGKT T+VE++ QEVKRG+K+LA A SN
Sbjct: 180 TPFNKNLDQSQKDAITKALSSKDVFLLHGPPGTGKTTTVVEIVLQEVKRGSKILACAASN 239
Query: 225 VAVDNLVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAE 284
+AVDN+VERL +K+VR+GHP+R+ + ++ L + + + G ++R ++L
Sbjct: 240 IAVDNIVERLVPHKVKLVRVGHPARLLPQVLDSALDAQVLKGDNSGLANDIRKEMKALNG 299
Query: 285 KRDTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDAR 344
K K K R L +E+ L + + R
Sbjct: 300 K---LLKAKDKNTRRLIQKELRTLGK-------------------------------EER 325
Query: 345 KLEERIARDIIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNKVERF 404
K ++ D+I+ ADV+LTT + A +D T+D+ IIDE Q+ + I L K R
Sbjct: 326 KRQQLAVSDVIKNADVILTTLTGALTRKLDNRTFDLVIIDEGAQALEVACWIALLKGSRC 385
Query: 405 VLAGDHKQLPPTILSLEAQE--LSRTLFEGLIERYPWK-SEMLVVQYRMNERIMEFPSKE 461
+LAGDH QLPPTI S EA+ L RTLFE L + Y + ML VQYRM+E IM + SKE
Sbjct: 386 ILAGDHLQLPPTIQSAEAERKGLGRTLFERLADLYGDEIKSMLTVQYRMHELIMNWSSKE 445
Query: 462 FYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSE 521
Y KI A SV L DL ++ K + E ++ +DT+ + E ++ E
Sbjct: 446 LYDNKITAHSSVASHMLFDL-------ENVTKSSSTEATLLLVDTAGCD--MEEKKDEEE 496
Query: 522 SRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISM-----KVPEDVEVKTVD 576
S N EAE+ +L+ GV+P IG+ITPY Q L+ + + +D+E+ TVD
Sbjct: 497 STYNEGEAEVAMAHAKRLMESGVQPSDIGIITPYAAQVMLLRILRGKEEKLKDMEISTVD 556
Query: 577 GYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKK 636
G+QGREKE II+S+VRSN E+GFLKD RR+NV++TR++R+ +V D+ T+SS K+
Sbjct: 557 GFQGREKEAIIISMVRSNSKKEVGFLKDQRRMNVAVTRSRRQCCIVCDTETVSSDAFLKR 616
Query: 637 MIEFFKEKGCFI 648
MIE+F+E G ++
Sbjct: 617 MIEYFEEHGEYL 628
>gb|AAG28561.1|AF199411_1 (AF199411) antifreeze-enhancer binding protein AEP [Rattus
norvegicus]
Length = 988
Score = 300 bits (760), Expect = 3e-80
Identities = 225/676 (33%), Positives = 360/676 (52%), Gaps = 81/676 (11%)
Query: 3 ITSFINRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEELGYF--- 59
+ SF+ + +L+E+ER+AE+E R S E + G +L L ++ G+ G +
Sbjct: 6 VESFVAQQLQLLELERDAEVEERRSWQEHSSLKELQSRGVCLLKL--QVSGQRTGLYGQR 63
Query: 60 LV-----KYGRNREIKTE-ISVGDLVVISKRDPLKSDLLGTVVEKGKRFIVVALETVPEW 113
LV K+G + + + GD+V + + G + ++ ++VA + ++
Sbjct: 64 LVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNESSQLATGVLTRITQKSVIVAFDESHDF 123
Query: 114 ALRDVRIDLY-----ANDITFRRWLENLNTIKK----AGKRALRFYLGLDEPSQGEEVNF 164
L R + Y AND+T++R + L T+KK + LG PS E+
Sbjct: 124 QLNLDRENTYRLLKLANDVTYKRLKKALLTLKKYHSGPASSLIDVLLGGSTPSPATEIPP 183
Query: 165 VPF-DKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLATAES 223
+ F + +L+ SQ++A+S AL ++ ++HGP GTGKT T+VE+I Q VK+G KVL A S
Sbjct: 184 LTFYNTTLDPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 243
Query: 224 NVAVDNLVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQH---ELYGELRELRVIGQ 280
N+AVDNLVERL+ +I+R+GHP+R+ + + + +L ++ + ++ ++R R I Q
Sbjct: 244 NIAVDNLVERLALCKKQILRLGHPARLLESVQQHSLDAVLARSDNAQIVADIR--RDIDQ 301
Query: 281 SLAEKRDTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAF 340
+ + T K R + IKL +
Sbjct: 302 VFGKNKKTQDK-----REKSNFRNEIKLLRK----------------------------- 327
Query: 341 DDARKLEERIARDIIREADVVLTTNSSAA----LEVVDYDTYDVAIIDEATQSTIPSILI 396
+ ++ EE + ADVVL TN+ A+ L+++ D +DV ++DE Q+ S I
Sbjct: 328 -ELKEREEAAIVQSLSAADVVLATNTGASTDGPLKLLPEDYFDVVVVDECAQALEASCWI 386
Query: 397 PLNKVERFVLAGDHKQLPPTILSLEA--QELSRTLFEGLIERY-PWKSEMLVVQYRMNER 453
PL K + +LAGDHKQLPPT +S +A LSR+L E L E++ ML VQYRM++
Sbjct: 387 PLLKAPKCILAGDHKQLPPTTVSHKAALAGLSRSLMERLAEKHGAAVVRMLAVQYRMHQA 446
Query: 454 IMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKW 513
I + S+ Y G++ A SV G L+DL ++ +L IDT+
Sbjct: 447 ITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLL-------LIDTAGC-GLL 498
Query: 514 ERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDL----ISMKVPED 569
E + S+S+ NP E +V + L+ GV+ I VI PY+ Q DL +S K PE
Sbjct: 499 ELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLRQSLSNKHPE- 557
Query: 570 VEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLS 629
+E+K+VDG+QGREKE +IL+ VRSN+ GE+GFL + RR+NV++TRA+R + V+ DS T++
Sbjct: 558 LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVN 617
Query: 630 SHETYKKMIEFFKEKG 645
+H K ++++F E G
Sbjct: 618 NHAFLKTLVDYFTEHG 633
>gi|4504623 immunoglobulin mu binding protein 2 [Homo sapiens]
>gi|730751|sp|P38935|SMB2_HUMAN DNA-BINDING PROTEIN
SMUBP-2 (IMMUNOGLOBULIN MU BINDING PROTEIN 2) (SMUBP-2)
(GLIAL FACTOR-1) (GF-1) >gi|401776|gb|AAA53082.1|
(L14754) DNA-binding protein [Homo sapiens]
Length = 993
Score = 299 bits (757), Expect = 7e-80
Identities = 221/677 (32%), Positives = 357/677 (52%), Gaps = 82/677 (12%)
Query: 3 ITSFINRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEELGYF--- 59
+ SF+ + +L+E+ER+AE+E R +S E + G +L L ++ + G +
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKL--QVSSQRTGLYGRL 63
Query: 60 LV-----KYGRNREIKTE-ISVGDLVVI----SKRDPLKSDLLGTVVEKGKRFIVVALET 109
LV +YG + + + GD+V + ++ L + +L V +K + VA +
Sbjct: 64 LVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLATGILTRVTQKS---VTVAFDE 120
Query: 110 VPEWALRDVRIDLY-----ANDITFRRWLENLNTIKK----AGKRALRFYLGLDEPSQGE 160
++ L R + Y AND+T+RR + L +KK + G PS
Sbjct: 121 SHDFQLSLDRENSYRLLKLANDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSPAS 180
Query: 161 EVNFVPF-DKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLA 219
E++ + F + L+ SQ++A+S AL ++ ++HGP GTGKT T+VE+I Q VK+G KVL
Sbjct: 181 EIHPLTFFNTCLDTSQKEAVSFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLC 240
Query: 220 TAESNVAVDNLVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRV-I 278
A SN+AVDNLVERL+ +I+R+GHP+R+ + + + +L ++ + + + ++R I
Sbjct: 241 CAPSNIAVDNLVERLALCKQRILRLGHPARLLESVQQHSLDAVLARSDSAQNVADIRKDI 300
Query: 279 GQSLAEKRDTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQK 338
Q + + T K R IKL R+ K
Sbjct: 301 DQVFVKNKKTQDK-----------------------------REKSNFRNEIKLLRKELK 331
Query: 339 AFDDARKLEERIARDIIREADVVLTTNSSAA----LEVVDYDTYDVAIIDEATQSTIPSI 394
++A LE + A+VVL TN+ A+ L+++ +DV +IDE Q+ S
Sbjct: 332 EREEAAMLES------LTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASC 385
Query: 395 LIPLNKVERFVLAGDHKQLPPTILSLEA--QELSRTLFEGLIERYPWK-SEMLVVQYRMN 451
IPL K + +LAGDHKQLPPT +S +A LS +L E L E Y + L VQYRM+
Sbjct: 386 WIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMH 445
Query: 452 ERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAEN 511
+ IM + S Y G++ A SV LRDL + ++ +L +DT+
Sbjct: 446 QAIMRWASDTMYLGQVTAHSSVARHLLRDLPGVAATEETGVPLL-------LVDTAGC-G 497
Query: 512 KWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISMKVPE--- 568
+E + +S+ NP E +V+ + L+ GV I V++PY+ Q DL+ +
Sbjct: 498 LFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHP 557
Query: 569 DVEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTL 628
++E+K+VDG+QGREKE +ILS VRSN+ GE+GFL + RR+NV++TRA+R + V+ DS T+
Sbjct: 558 ELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTV 617
Query: 629 SSHETYKKMIEFFKEKG 645
++H K ++E+F + G
Sbjct: 618 NNHAFLKTLVEYFTQHG 634
>pir||A47500 Ig mu chain switch region binding protein 2 - human
Length = 993
Score = 299 bits (757), Expect = 7e-80
Identities = 221/677 (32%), Positives = 357/677 (52%), Gaps = 82/677 (12%)
Query: 3 ITSFINRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEELGYF--- 59
+ SF+ + +L+E+ER+AE+E R +S E + G +L L ++ + G +
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKL--QVSSQRTGLYGRL 63
Query: 60 LV-----KYGRNREIKTE-ISVGDLVVI----SKRDPLKSDLLGTVVEKGKRFIVVALET 109
LV +YG + + + GD+V + ++ L + +L V +K + VA +
Sbjct: 64 LVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLATGILTRVTQKS---VTVAFDE 120
Query: 110 VPEWALRDVRIDLY-----ANDITFRRWLENLNTIKK----AGKRALRFYLGLDEPSQGE 160
++ L R + Y AND+T+RR + L +KK + G PS
Sbjct: 121 SHDFQLSLDRENSYRLLKLANDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSPAS 180
Query: 161 EVNFVPF-DKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLA 219
E++ + F + L+ SQ++A+S AL ++ ++HGP GTGKT T+VE+I Q VK+G KVL
Sbjct: 181 EIHPLTFFNTCLDTSQKEAVSFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLC 240
Query: 220 TAESNVAVDNLVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRV-I 278
A SN+AVDNLVERL+ +I+R+GHP+R+ + + + +L ++ + + + ++R I
Sbjct: 241 CAPSNIAVDNLVERLALCKQRILRLGHPARLLESVQQHSLDAVLARSDSAQNVADIRKDI 300
Query: 279 GQSLAEKRDTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQK 338
Q + + T K R IKL R+ K
Sbjct: 301 DQVFVKNKKTQDK-----------------------------REKSNFRNEIKLLRKELK 331
Query: 339 AFDDARKLEERIARDIIREADVVLTTNSSAA----LEVVDYDTYDVAIIDEATQSTIPSI 394
++A LE + A+VVL TN+ A+ L+++ +DV +IDE Q+ S
Sbjct: 332 EREEAAMLES------LTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASC 385
Query: 395 LIPLNKVERFVLAGDHKQLPPTILSLEA--QELSRTLFEGLIERYPWK-SEMLVVQYRMN 451
IPL K + +LAGDHKQLPPT +S +A LS +L E L E Y + L VQYRM+
Sbjct: 386 WIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMH 445
Query: 452 ERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAEN 511
+ IM + S Y G++ A SV LRDL + ++ +L +DT+
Sbjct: 446 QAIMRWASDTMYLGQVTAHSSVARHLLRDLPGVAATEETGVPLL-------LVDTAGC-G 497
Query: 512 KWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISMKVPE--- 568
+E + +S+ NP E +V+ + L+ GV I V++PY+ Q DL+ +
Sbjct: 498 LFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHP 557
Query: 569 DVEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTL 628
++E+K+VDG+QGREKE +ILS VRSN+ GE+GFL + RR+NV++TRA+R + V+ DS T+
Sbjct: 558 ELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTV 617
Query: 629 SSHETYKKMIEFFKEKG 645
++H K ++E+F + G
Sbjct: 618 NNHAFLKTLVEYFTQHG 634
>gi|11435569 immunoglobulin mu binding protein 2 [Homo sapiens]
Length = 731
Score = 298 bits (754), Expect = 2e-79
Identities = 221/677 (32%), Positives = 357/677 (52%), Gaps = 82/677 (12%)
Query: 3 ITSFINRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEELGYF--- 59
+ SF+ + +L+E+ER+AE+E R +S E + G +L L ++ + G +
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKL--QVSSQRTGLYGRL 63
Query: 60 LV-----KYGRNREIKTE-ISVGDLVVI----SKRDPLKSDLLGTVVEKGKRFIVVALET 109
LV +YG + + + GD+V + ++ L + +L V +K + VA +
Sbjct: 64 LVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLATGILTRVTQKS---VTVAFDE 120
Query: 110 VPEWALRDVRIDLY-----ANDITFRRWLENLNTIKK----AGKRALRFYLGLDEPSQGE 160
++ L R + Y AND+T+RR + L +KK + G PS
Sbjct: 121 SHDFQLSLDRENSYRLLKLANDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSPAS 180
Query: 161 EVNFVPF-DKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLA 219
E++ + F + L+ SQ++A+S AL ++ ++HGP GTGKT T+VE+I Q VK+G KVL
Sbjct: 181 EIHPLTFFNTCLDTSQKEAVSFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLC 240
Query: 220 TAESNVAVDNLVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRV-I 278
A SN+AVDNLVERL+ +I+R+GHP+R+ + + + +L ++ + + + ++R I
Sbjct: 241 CAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDI 300
Query: 279 GQSLAEKRDTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQK 338
Q + + T K R IKL R+ K
Sbjct: 301 DQVFVKNKKTQDK-----------------------------REKSNFRNEIKLLRKELK 331
Query: 339 AFDDARKLEERIARDIIREADVVLTTNSSAA----LEVVDYDTYDVAIIDEATQSTIPSI 394
++A LE + A+VVL TN+ A+ L+++ +DV +IDE Q+ S
Sbjct: 332 EREEAAMLES------LTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASC 385
Query: 395 LIPLNKVERFVLAGDHKQLPPTILSLEA--QELSRTLFEGLIERYPWK-SEMLVVQYRMN 451
IPL K + +LAGDHKQLPPT +S +A LS +L E L E Y + L VQYRM+
Sbjct: 386 WIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMH 445
Query: 452 ERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAEN 511
+ IM + S Y G++ A SV LRDL + ++ +L +DT+
Sbjct: 446 QAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLL-------LVDTAGC-G 497
Query: 512 KWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISMKVPE--- 568
+E + +S+ NP E +V+ + L+ GV I V++PY+ Q DL+ +
Sbjct: 498 LFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHP 557
Query: 569 DVEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTL 628
++E+K+VDG+QGREKE +ILS VRSN+ GE+GFL + RR+NV++TRA+R + V+ DS T+
Sbjct: 558 ELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTV 617
Query: 629 SSHETYKKMIEFFKEKG 645
++H K ++E+F + G
Sbjct: 618 NNHAFLKTLVEYFTQHG 634
>sp|Q60560|SMB2_MESAU DNA-BINDING PROTEIN SMUBP-2 (IMMUNOGLOBULIN MU BINDING PROTEIN 2)
(SMUBP-2) (INSULIN II GENE ENHANCER-BINDING PROTEIN)
(RIPE3B-BINDING COMPLEX 3B2 P110 SUBUNIT) (RIP-1)
>gi|11360343|pir||T48845 insulin II gene
enhancer-binding protein rip1 [validated] - golden
hamster >gi|290919|gb|AAB00104.1| (L15625) insulin II
gene enhancer-binding protein [Mesocricetus auratus]
Length = 989
Score = 296 bits (750), Expect = 5e-79
Identities = 223/678 (32%), Positives = 353/678 (51%), Gaps = 85/678 (12%)
Query: 3 ITSFINRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEELGYFLVK 62
+ SF+ + EL+E+ER+AE+E R S E + G +L L ++ + G
Sbjct: 6 VESFVAQQLELLELERDAEVEERRSWQEHSSLKELQSRGVCLLKL--QVSSQCTGL---- 59
Query: 63 YGRNREIKTEISVGDLVVISKRDPLKSDLLG-------------TVVEKGKRFIVVALET 109
YG+ +G +VV+ D++G + ++ + VA +
Sbjct: 60 YGQRLVTFEPRKLGPVVVLPSNSFTSGDIVGLYDANESSQLATGVLTRITQKSVTVAFDE 119
Query: 110 VPEWALRDVRIDLY-----ANDITFRRWLENLNTIKK----AGKRALRFYLGLDEPSQGE 160
++ L R + Y AND+T++R + L T+KK + LG PS
Sbjct: 120 SHDFQLNLDRENTYRLLKLANDVTYKRLKKALMTLKKYHSGPASSLIDVLLGGSSPSPTT 179
Query: 161 EVN-FVPFDKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLA 219
E+ F ++ +L+ SQ++A+S AL ++ ++HGP GTGKT T+VE+I Q VK+G K+L
Sbjct: 180 EIPPFTFYNTALDPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEIILQAVKQGLKILC 239
Query: 220 TAESNVAVDNLVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRV-I 278
A SNVAVDNLVERL+ +I+R+GHP+R+ + + +L ++ + + + ++R I
Sbjct: 240 CAPSNVAVDNLVERLALCKKRILRLGHPARLLESAQQHSLDAVLARSDNAQIVADIRKDI 299
Query: 279 GQSLAEKRDTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQK 338
Q + + T K R IKL R+ K
Sbjct: 300 DQVFGKNKKTQDK-----------------------------REKSNFRNEIKLLRKELK 330
Query: 339 AFDDARKLEERIARDIIREADVVLTTNSSAA----LEVVDYDTYDVAIIDEATQSTIPSI 394
++A ++ A ADVVL TN+ A+ L+++ + +DV ++DE Q+ S
Sbjct: 331 EREEAAIVQSLTA------ADVVLATNTGASSDGPLKLLPENHFDVVVVDECAQALEASC 384
Query: 395 LIPLNKVERFVLAGDHKQLPPTILSLEA--QELSRTLFEGLIERY-PWKSEMLVVQYRMN 451
IPL K + +LAGDH+QLPPT +S +A LSR+L E L+E++ ML VQYRM+
Sbjct: 385 WIPLLKAPKCILAGDHRQLPPTTISHKAALAGLSRSLMERLVEKHGAGAVRMLTVQYRMH 444
Query: 452 ERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAEN 511
+ I + S+ Y G++ A SV G L+DL ++ +L IDT+
Sbjct: 445 QAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLL-------LIDTAGC-G 496
Query: 512 KWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDL----ISMKVP 567
E S+S+ NP E +V + L+ GV I VI PY+ Q DL +S K P
Sbjct: 497 LLELDEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGDIAVIAPYNLQVDLLRQSLSNKHP 556
Query: 568 EDVEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSST 627
E +E+K+VDG+QGREKE +IL+ VRSN+ GE+GFL + RR+NV++TRA+R + V+ DS T
Sbjct: 557 E-LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRT 615
Query: 628 LSSHETYKKMIEFFKEKG 645
+++H K ++++F E G
Sbjct: 616 VNNHAFLKTLVDYFTEHG 633
>gb|AAA70430.1| (L24544) DNA helicase [Homo sapiens]
Length = 993
Score = 295 bits (748), Expect = 8e-79
Identities = 220/677 (32%), Positives = 356/677 (52%), Gaps = 82/677 (12%)
Query: 3 ITSFINRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEELGYF--- 59
+ SF+ + +L+E+ER+AE+E R +S E + G +L L ++ + G +
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKL--QVSSQRTGLYGRL 63
Query: 60 LV-----KYGRNREIKTE-ISVGDLVVI----SKRDPLKSDLLGTVVEKGKRFIVVALET 109
LV +YG + + + GD+V + ++ L + +L V +K + VA +
Sbjct: 64 LVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLATGILTRVTQKS---VTVAFDE 120
Query: 110 VPEWALRDVRIDLY-----ANDITFRRWLENLNTIKK----AGKRALRFYLGLDEPSQGE 160
++ L R + Y AND+T+RR + L +KK + G PS
Sbjct: 121 SHDFQLSLDRENSYRLLKLANDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSPAS 180
Query: 161 EVNFVPF-DKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLA 219
E++ + F + L+ SQ++A+ AL ++ ++HGP GTGKT T+VE+I Q VK+G KVL
Sbjct: 181 EIHPLTFFNTCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLC 240
Query: 220 TAESNVAVDNLVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRV-I 278
A SN+AVDNLVERL+ +I+R+GHP+R+ + + + +L ++ + + + ++R I
Sbjct: 241 CAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDI 300
Query: 279 GQSLAEKRDTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQK 338
Q + + T K R IKL R+ K
Sbjct: 301 DQVFVKNKKTQDK-----------------------------REKSNFRNEIKLLRKELK 331
Query: 339 AFDDARKLEERIARDIIREADVVLTTNSSAA----LEVVDYDTYDVAIIDEATQSTIPSI 394
++A LE + A+VVL TN+ A+ L+++ +DV +IDE Q+ S
Sbjct: 332 EREEAAMLES------LTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASC 385
Query: 395 LIPLNKVERFVLAGDHKQLPPTILSLEA--QELSRTLFEGLIERYPWK-SEMLVVQYRMN 451
IPL K + +LAGDHKQLPPT +S +A LS +L E L E Y + L VQYRM+
Sbjct: 386 WIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMH 445
Query: 452 ERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAEN 511
+ IM + S Y G++ A SV LRDL + ++ +L +DT+
Sbjct: 446 QAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLL-------LVDTAGC-G 497
Query: 512 KWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISMKVPE--- 568
+E + +S+ NP E +V+ + L+ GV I V++PY+ Q DL+ +
Sbjct: 498 LFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHP 557
Query: 569 DVEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTL 628
++E+K+VDG+QGREKE +ILS VRSN+ GE+GFL + RR+NV++TRA+R + V+ DS T+
Sbjct: 558 ELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTV 617
Query: 629 SSHETYKKMIEFFKEKG 645
++H K ++E+F + G
Sbjct: 618 NNHAFLKTLVEYFTQHG 634
>gi|6678029 immunoglobulin S mu binding protein 2 [Mus musculus]
>gi|730752|sp|P40694|SMB2_MOUSE DNA-BINDING PROTEIN
SMUBP-2 (IMMUNOGLOBULIN MU BINDING PROTEIN 2) (SMUBP-2)
(CARDIAC TRANSCRIPTION FACTOR 1) (CATF1)
>gi|423421|pir||S35633 DNA-binding protein - mouse
>gi|293806|gb|AAA40143.1| (L10075) DNA-binding protein
[Mus musculus]
Length = 993
Score = 294 bits (746), Expect = 1e-78
Identities = 224/674 (33%), Positives = 357/674 (52%), Gaps = 77/674 (11%)
Query: 3 ITSFINRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGK-----IIGEELG 57
+ SF+ + +L+E+ER+AE+E R S E + G +L L + G+ L
Sbjct: 6 VESFVAQQLQLLELERDAEVEERRSWQEHSSLRELQSRGVCLLKLQVSSQRTGLYGQRLV 65
Query: 58 YFLV-KYGRNREIKTE-ISVGDLVVISKRDPLKSDLLGTVVEKGKRFIVVALETVPEWAL 115
F K+G + + + GD+V + + G + ++ + VA + + L
Sbjct: 66 TFEPRKFGPAVVLPSNSFTSGDIVGLYDTNENSQLATGVLTRITQKSVTVAFDESHDLQL 125
Query: 116 RDVRIDLY-----ANDITFRRWLENLNTIKK----AGKRALRFYLGLDEPSQGEEVNFVP 166
R + Y AND+T++R + L T+KK + LG PS E+ +
Sbjct: 126 NLDRENTYRLLKLANDVTYKRLKKALMTLKKYHSGPASSLIDILLGSSTPSPAMEIPPLS 185
Query: 167 F-DKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLATAESNV 225
F + +L+ SQ++A+S AL ++ ++HGP GTGKT T+VE+I Q VK+G KVL A SN+
Sbjct: 186 FYNTTLDLSQKEAVSFALAQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNI 245
Query: 226 AVDNLVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQH---ELYGELRELRVIGQSL 282
AVDNLVERL+ +I+R+GHP+R+ + + +L ++ + ++ ++R R I Q
Sbjct: 246 AVDNLVERLALCKKRILRLGHPARLLESVQHHSLDAVLARSDNAQIVADIR--RDIDQVF 303
Query: 283 AEKRDTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDD 342
+ + T K R++G IKL R+ K ++
Sbjct: 304 GKNKKTQDK-------------------REKG----------NFRSEIKLLRKELKEREE 334
Query: 343 ARKLEERIARDIIREADVVLTTNSSAA----LEVVDYDTYDVAIIDEATQSTIPSILIPL 398
A ++ A ADVVL TN+ A+ L+++ D +DV ++DE Q+ S IPL
Sbjct: 335 AAIVQSLTA------ADVVLATNTGASSDGPLKLLPEDYFDVVVVDECAQALEASCWIPL 388
Query: 399 NKVERFVLAGDHKQLPPTILSLEA--QELSRTLFEGLIERY-PWKSEMLVVQYRMNERIM 455
K + +LAGDH+QLPPT +S A LSR+L E L E++ ML VQYRM++ IM
Sbjct: 389 LKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLMERLAEKHGAGVVRMLTVQYRMHQAIM 448
Query: 456 EFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWER 515
+ S+ Y G+ + SV G L+DL ++ +L IDT+ E
Sbjct: 449 CWASEAMYHGQFTSHPSVAGHLLKDLPGVTDTEETRVPLL-------LIDTAGC-GLLEL 500
Query: 516 QRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDL----ISMKVPEDVE 571
+ S+S+ NP E +V + L+ GV+ I VI PY+ Q DL +S K PE +E
Sbjct: 501 EEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLRQSLSNKHPE-LE 559
Query: 572 VKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSH 631
+K+VDG+QGREKE ++L+ VRSN+ GE+GFL + RR+NV++TRA+R + V+ DS T+++H
Sbjct: 560 IKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVNNH 619
Query: 632 ETYKKMIEFFKEKG 645
+ ++++F E G
Sbjct: 620 AFLETLVDYFTEHG 633
>pir||T41580 probable dna-binding protein - fission yeast (Schizosaccharomyces
pombe) >gi|2370467|emb|CAB11611.1| (Z98951) hypothetical
protein [Schizosaccharomyces pombe]
>gi|4239673|emb|CAA20863.1| (AL031546) putative
dna-binding protein [Schizosaccharomyces pombe]
Length = 660
Score = 262 bits (662), Expect = 1e-68
Identities = 208/687 (30%), Positives = 341/687 (49%), Gaps = 88/687 (12%)
Query: 3 ITSFINRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEELGYFLV- 61
I F +R E V+ +++E++ ++R +R G A++NL ++ G +
Sbjct: 15 IQKFGDREIEFVDEAQKSEVDETEKSIKRFPLSVLQRKGLALINLRIGVVKTGFGGKTII 74
Query: 62 ------KYGRNREIKTE-ISVGDLVVI-------SKRDPLKSDLL--GTVVEKGKRFIVV 105
+ E+ S GD+V I K+ P ++D+ G V +R I V
Sbjct: 75 DFEKDPAFSNGEELPANSFSPGDVVSIRQDFQSSKKKRPNETDISVEGVVTRVHERHISV 134
Query: 106 AL---ETVPEWALRDVRIDLYANDITFRRWLENLNTIKKA--GKRALRFY---------L 151
AL E +P R + L N +T+ R + K++ R FY +
Sbjct: 135 ALKSEEDIPSSVTRLSVVKL-VNRVTYERMRHTMLEFKRSIPEYRNSLFYTLIGRKKADV 193
Query: 152 GLDEPSQGEEVNFVPFDKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEV 211
+D+ G+ F+K LN SQ+KA+ ++ ++ L+HGP GTGKT TLVE+I+Q V
Sbjct: 194 SIDQKLIGD---IKYFNKELNASQKKAVKFSIAVKELSLIHGPPGTGKTHTLVEIIQQLV 250
Query: 212 KRGNKVLATAESNVAVDNLVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGE 271
R ++L SN+AVDN+V+RLS SGI +VR+GHP+R+ + + +L L
Sbjct: 251 LRNKRILVCGASNLAVDNIVDRLSSSGIPMVRLGHPARLLPSILDHSLDVL--------- 301
Query: 272 LRELRVIGQSLAEKRDTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIK 331
+ T RG+S++ + L++ + G R +
Sbjct: 302 ----------------SRTGDNGDVIRGISEDIDVCLSKITKTKNGRERR---------E 336
Query: 332 LNRQVQKAFDDARKLEERIARDIIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTI 391
+ + +++ D RK E + +I+ + VV T A + +D IIDEA+Q+
Sbjct: 337 IYKNIRELRKDYRKYEAKTVANIVSASKVVFCTLHGAGSRQLKGQRFDAVIIDEASQALE 396
Query: 392 PSILIPLNKVERFVLAGDHKQLPPTILSLEAQELSRTLFEGLIE-RYPWKSEMLVVQYRM 450
P IPL + + +LAGDH QL P + +++ ++FE L++ + L +QYRM
Sbjct: 397 PQCWIPLLGMNKVILAGDHMQLSPNV---QSKRPYISMFERLVKSQGDLVKCFLNIQYRM 453
Query: 451 NERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDT---- 506
+E I +FPS FY K++ E V+ L DL + + ++ I F DT
Sbjct: 454 HELISKFPSDTFYDSKLVPAEEVKKRLLMDLENVEETELT-------DSPIYFYDTLGNY 506
Query: 507 SKAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISMKV 566
+ + + Q +S+ N EA+IV+ + LL G++ + I V+TPY+ Q LI +
Sbjct: 507 QEDDRSEDMQNFYQDSKSNHWEAQIVSYHISGLLEAGLEAKDIAVVTPYNAQVALIRQLL 566
Query: 567 PE---DVEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVG 623
E +VE+ +VD QGREKE II SLVRSN + E+GFL + RRLNV++TR KR L V+G
Sbjct: 567 KEKGIEVEMGSVDKVQGREKEAIIFSLVRSNDVREVGFLAEKRRLNVAITRPKRHLCVIG 626
Query: 624 DSSTLS-SHETYKKMIEFFKEKGCFIE 649
DS+T+ + E + + ++F +E ++
Sbjct: 627 DSNTVKWASEFFHQWVDFLEENAIVMD 653
>gi|6322835 DNA helicase A; Hcs1p [Saccharomyces cerevisiae]
>gi|465704|sp|P34243|YKB7_YEAST HYPOTHETICAL 78.3 KD
PROTEIN IN RAM2-ATP7 INTERGENIC REGION
>gi|422147|pir||S34700 probable purine
nucleotide-binding protein YKL017c - yeast
(Saccharomyces cerevisiae) >gi|395256|emb|CAA52266.1|
(X74152) orf4; homologous to human putative GTP-binding
protein [Saccharomyces cerevisiae]
>gi|486007|emb|CAA81852.1| (Z28017) ORF YKL017c
[Saccharomyces cerevisiae]
Length = 683
Score = 230 bits (581), Expect = 3e-59
Identities = 216/708 (30%), Positives = 349/708 (48%), Gaps = 113/708 (15%)
Query: 14 VEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEEL-GYFLVKYGRNREI--- 69
++ ERE +I+ + LS + + G AI N++ + I L G ++ G N +
Sbjct: 13 IKHEREQDIQTTSRLLTTLSIQQLVQNGLAINNIHLENIRSGLIGKLYMELGPNLAVNDK 72
Query: 70 --KTEISVGDLVVI--------SKRDPL-----------KSDLLGTVVEKGKRFIVVALE 108
+ +I VGD+V++ +K P +++ G V + I +ALE
Sbjct: 73 IQRGDIKVGDIVLVRPAKTKVNTKTKPKVKKVSEDSNGEQAECSGVVYKMSDTQITIALE 132
Query: 109 TVPE------WALRDVRIDLYANDITFRRW---LENLNTIKKAGKRALRFYLGLDEP--- 156
+ ++ + I N +T+ R + L+ I + + YL + P
Sbjct: 133 ESQDVIATTFYSYSKLYILKTTNVVTYNRMESTMRKLSEISSPIQDKIIQYLVNERPFIP 192
Query: 157 SQGEEVNFVPF-DKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRG- 214
+ N F + +LN SQ+ AI+ A+ + D ++HGP GTGKT TL+ELI+Q + +
Sbjct: 193 NTNSFQNIKSFLNPNLNDSQKTAINFAINN-DLTIIHGPPGTGKTFTLIELIQQLLIKNP 251
Query: 215 -NKVLATAESNVAVDNLVERLSR--SGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGE 271
++L SN++VD ++ERL+ ++RIGHP+R+ +L L
Sbjct: 252 EERILICGPSNISVDTILERLTPLVPNNLLLRIGHPARLLDSNKRHSLDIL--------- 302
Query: 272 LRELRVIGQSLAEKRDTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIK 331
K++T K +EI KL + + + R E IK
Sbjct: 303 ------------SKKNTIVKDI--------SQEIDKLIQENKKLKNYKQR--KENWNEIK 340
Query: 332 LNRQVQKAFDDARKLEERIARDIIREADVVLTT-NSSAALEVV-------DYDTYDVAII 383
L R+ D +K E + +D+I ++ +V+TT + S++ E+ ++ +D II
Sbjct: 341 LLRK------DLKKREFKTIKDLIIQSRIVVTTLHGSSSRELCSLYRDDPNFQLFDTLII 394
Query: 384 DEATQSTIPSILIPL----NKVERFVLAGDHKQLPPTILSLEAQE----LSRTLFEGLIE 435
DE +Q+ P IPL N+ + VLAGD+KQLPPTI + + + L TLF+ +I+
Sbjct: 395 DEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKTEDDKNVIHNLETTLFDRIIK 454
Query: 436 RYPWKS--EMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQ---SPNDS 490
+P + + L VQYRMN++IMEFPS Y GK++AD +V L DL S +D
Sbjct: 455 IFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATVANRLLIDLPTVDATPSEDDD 514
Query: 491 WGKILNPENVIVFIDTSKAE-NKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWI 549
KI +++ DT E + + S+ N E IV + ++ L S V I
Sbjct: 515 DTKI-----PLIWYDTQGDEFQETADEATILGSKYNEGEIAIVKEHIENLRSFNVPENSI 569
Query: 550 GVITPYDDQRDLISMKVPE-----DVEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKD 604
GVI+PY+ Q + + + D+E+ TVDG+QGREK+VIILSLVRSN+ E+GFLK+
Sbjct: 570 GVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREKDVIILSLVRSNEKFEVGFLKE 629
Query: 605 LRRLNVSLTRAKRKLIVVGDSSTLS-SHETYKKMIEFFKEKGCFIEFP 651
RRLNV++TR +R+L+VVG+ L Y K + E+ + +P
Sbjct: 630 ERRLNVAMTRPRRQLVVVGNIEVLQRCGNKYLKSWSEWCEENADVRYP 677
>dbj|BAB09253.1| (AB026643) DNA helicase-like [Arabidopsis thaliana]
Length = 750
Score = 219 bits (553), Expect = 6e-56
Identities = 213/703 (30%), Positives = 332/703 (46%), Gaps = 113/703 (16%)
Query: 3 ITSFINRLKELVEIEREAEIEAMRLEMRRLS------------------GIERERLGRAI 44
I F +++ +L+++ER+ E+E + E+ + G + L I
Sbjct: 53 IDEFTSQMSQLLQVERDTELEVTQEELDVVPTPDESSDSSKPIEFLVRHGDAPQELCDTI 112
Query: 45 LNLNGKIIGEELG---YFLVKYGRNREIK-TEISVGDLVVISKRDPLKSDLL----GTVV 96
NL LG L K G N + T +S GD+V I D + G V
Sbjct: 113 CNLYAVSTSTGLGGMHLVLFKVGGNHRLPPTTLSPGDMVCIRVCDSRGAGATACTQGFVH 172
Query: 97 EKGKR--FIVVALE------TVPEWALRDVRIDLY---ANDITFRRWLENLNTIKKAGKR 145
G+ I VALE T + + VRID A+ +T+ R E L ++K G +
Sbjct: 173 NLGEDGCSIGVALESRHGDPTFSKLFGKSVRIDRIHGLADALTYERNCEALMLLQKNGLQ 232
Query: 146 ALRFYLGLDEP--SQGEEVNFV----------------PFDKSLNRSQRKAISKALGSE- 186
+ + GE++ ++ P K + SQR+AI+ + +
Sbjct: 233 KKNPSISVVATLFGDGEDITWLEQNDYVDWSEAELSDEPVSKLFDSSQRRAIALGVNKKR 292
Query: 187 DFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLATAESNVAVDNLVERLSRSGIKIVRIGH 246
+V GP GTGKT L E+I V++G +VL TA +N AVDN+VE+L G+ IVR+G+
Sbjct: 293 PVMIVQGPPGTGKTGMLKEVITLAVQQGERVLVTAPTNAAVDNMVEKLLHLGLNIVRVGN 352
Query: 247 PSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGLSDEEII 306
P+R+S + +L ++ +L L K+ K R+ L D+ +
Sbjct: 353 PARISSAVASKSLGEIVNS--------KLASFRAELERKKSDLRK---DLRQCLRDDVL- 400
Query: 307 KLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEERIARDIIREADVVLTTNS 366
A G+ +L+ ++ + +K K E+ ++I+ A VV TN
Sbjct: 401 --------AAGI-RQLLKQLGKTLK-------------KKEKETVKEILSNAQVVFATNI 438
Query: 367 SAALEVV-DYDTYDVAIIDEATQSTIPSILIPLNKVERFVLAGDHKQLPPTILSLEAQE- 424
AA ++ +T+D+ +IDEA QS PS IP+ + +R +L+GD QL P +LS +A E
Sbjct: 439 GAADPLIRRLETFDLVVIDEAGQSIEPSCWIPILQGKRCILSGDPCQLAPVVLSRKALEG 498
Query: 425 -LSRTLFEGLIERYPW-KSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLV 482
L +L E + + L QYRMN+ I + SKE YGG + +S + L+
Sbjct: 499 GLGVSLLERAASLHDGVLATKLTTQYRMNDVIAGWASKEMYGGWL---KSAPSVASHLLI 555
Query: 483 EYQSPNDSWGKILNPENVIVFIDT-----SKAENKWER-QRRGSESRENPLEAEIVAKIV 536
+ +W + +V +DT S + ER G+ S N EA+IV V
Sbjct: 556 DSPFVKATW----ITQCPLVLLDTRMPYGSLSVGCEERLDPAGTGSLYNEGEADIVVNHV 611
Query: 537 DKLLSIGVKPEWIGVITPYDDQRDLI-----SMKVPEDVEVKTVDGYQGREKEVIILSLV 591
L+ GV P I V +PY Q L+ V + VEV T+D +QGRE + +I+S+V
Sbjct: 612 ISLIYAGVSPMAIAVQSPYVAQVQLLRERLDDFPVADGVEVATIDSFQGREADAVIISMV 671
Query: 592 RSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETY 634
RSN LG +GFL D RR+NV++TRA++ + VV DSST+ H T+
Sbjct: 672 RSNNLGAVGFLGDSRRMNVAITRARKHVAVVCDSSTI-CHNTF 713
>pir||D72258 helicase-related protein - Thermotoga maritima (strain MSB8)
>gi|4981975|gb|AAD36482.1|AE001793_12 (AE001793)
helicase-related protein [Thermotoga maritima]
Length = 245
Score = 215 bits (543), Expect = 9e-55
Identities = 104/157 (66%), Positives = 131/157 (83%)
Query: 494 ILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVIT 553
+L+P+NV+VFIDT +++ERQR+ S SRENPLEA+IV ++V+KLLS+GVK +WIG+IT
Sbjct: 89 VLSPKNVLVFIDTKNRSDRFERQRKDSPSRENPLEAQIVKEVVEKLLSMGVKEDWIGIIT 148
Query: 554 PYDDQRDLISMKVPEDVEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLT 613
PYDDQ +LI + VEV +VDG+QGREKEVII+S VRSNK GEIGFL+DLRRLNVSLT
Sbjct: 149 PYDDQVNLIRELIEAKVEVHSVDGFQGREKEVIIISFVRSNKNGEIGFLEDLRRLNVSLT 208
Query: 614 RAKRKLIVVGDSSTLSSHETYKKMIEFFKEKGCFIEF 650
RAKRKLI GDSSTLS H TY++ +EF K+KG ++ F
Sbjct: 209 RAKRKLIATGDSSTLSVHPTYRRFVEFVKKKGTYVIF 245
>emb|CAC18314.1| (AL451022) probable HUPF1 protein [Neurospora crassa]
Length = 1093
Score = 215 bits (541), Expect = 2e-54
Identities = 177/507 (34%), Positives = 252/507 (48%), Gaps = 85/507 (16%)
Query: 165 VPFDKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGN-KVLATAES 223
VP LN SQ AI + L S L+ GP GTGKT T +I K N +VL A S
Sbjct: 450 VPGLPELNASQIAAIKQVL-SNPLSLIQGPPGTGKTVTSATIIYHLAKMSNSQVLVCAPS 508
Query: 224 NVAVDNLVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLA 283
NVAVD L ER+ R+G+K+VR+ SR E+++++L ++
Sbjct: 509 NVAVDQLCERIHRTGLKVVRLTAKSREDV---ESSVSFLALHEQV--------------- 550
Query: 284 EKRDTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDA 343
R +++E+ L + K E +L+ Q +K F
Sbjct: 551 -------------RMNTTNKELDGLVKLK--------------TETGELSSQDEKRF--- 580
Query: 344 RKLEERIARDIIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNK-VE 402
++L + R+I++ ADVV T A + + +IDE+TQS P +IPL +
Sbjct: 581 KQLTRQAEREILQNADVVCCTCVGAGDPRLSKMKFRNVLIDESTQSAEPECMIPLVLGCK 640
Query: 403 RFVLAGDHKQLPPTILSLEAQE--LSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSK 460
+ VL GDHKQL P I++ +A + L+++LFE L+ + + L VQYRM+ + EFPS
Sbjct: 641 QVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLV-KLQFTPIRLKVQYRMHPCLSEFPSN 699
Query: 461 EFYGGKIIADESVRGIT----LRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQ 516
FY G + G+T LR V++ P PE ++F S N E
Sbjct: 700 MFYEGSL-----QNGVTAAERLRKDVDFPWPV--------PETPMMF--WSNLGN--EEI 742
Query: 517 RRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISMKVPE-------- 568
S N EA V KIV + GVKP IGVITPY+ QR I +
Sbjct: 743 SASGTSYLNRTEAANVEKIVTRFFKAGVKPADIGVITPYEGQRSYIVNTMQNTGTFKKES 802
Query: 569 --DVEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSS 626
+VEV +VD +QGREK+ I+LS VRSN+ IGFL D RRLNV+LTRAK L+++G+
Sbjct: 803 YREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGLVIIGNPK 862
Query: 627 TLSSHETYKKMIEFFKEKGCFIEFPFS 653
L HE + ++ FK+K C +E P +
Sbjct: 863 VLCKHELWHHLLVHFKDKKCLVEGPLT 889
>pir||T43280 nonsense-mediated mRNA decay trans-acting factor - Caenorhabditis
elegans >gi|3328177|gb|AAC26789.1| (AF074017)
nonsense-mediated mRNA decay trans-acting factor
[Caenorhabditis elegans]
Length = 1069
Score = 206 bits (519), Expect = 6e-52
Identities = 183/561 (32%), Positives = 273/561 (48%), Gaps = 95/561 (16%)
Query: 120 IDLYANDITFRRWLENLNTIKKAGKRALRFYLGLDEPSQGEEVNFVPFD----------K 169
+D+ N TF R + L + K A+ YL E + FD
Sbjct: 386 VDVVWNATTFERQYKALAALLNDSK-AISPYLYQKLLGHPAEEMMLKFDLPRRLSVAGLP 444
Query: 170 SLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKR--GNKVLATAESNVAV 227
LN SQ +A+ + L + L+ GP GTGKT ++ V++ GN VL + SN+AV
Sbjct: 445 ELNSSQMQAVKQVL-TRPLSLIQGPPGTGKTVVSATIVYHLVQKTEGN-VLVCSPSNIAV 502
Query: 228 DNLVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRD 287
D+L E++ ++G+K+VR+ SR ETT+ YL QH+L +V+G +
Sbjct: 503 DHLAEKIHKTGLKVVRLCARSREHS---ETTVPYLTLQHQL-------KVMGGA------ 546
Query: 288 TYTKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLE 347
E+ KL + K A L + DD R ++
Sbjct: 547 ----------------ELQKLIQLKDEAGELEFK-------------------DDLRYMQ 571
Query: 348 ERIARD--IIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNK-VERF 404
+ ++ ++ ADV+ T SSAA + +IDE+TQ+T P IL+ + + V +
Sbjct: 572 LKRVKEHELLAAADVICCTCSSAADARLSKIRTRTVLIDESTQATEPEILVSIMRGVRQL 631
Query: 405 VLAGDHKQLPPTILSLEAQ--ELSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEF 462
VL GDH QL P ++ +A LS++LFE L+ + L VQYRM+ + EFPS F
Sbjct: 632 VLVGDHCQLGPVVICKKAAIAGLSQSLFERLV-LLGIRPFRLQVQYRMHPVLSEFPSNVF 690
Query: 463 YGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSES 522
Y G + G+T D + W K P F S +E E G+ S
Sbjct: 691 YDGSL-----QNGVTENDR-HMTGVDWHWPK---PNKPAFFWHCSGSE---ELSASGT-S 737
Query: 523 RENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLI----------SMKVPEDVEV 572
N EA V K+V KL+ GV+P IGVIT Y+ QR I + K+ E+VE+
Sbjct: 738 FLNRTEAANVEKLVSKLIKAGVQPHQIGVITSYEGQRSFIVNYMHTQGTLNSKLYENVEI 797
Query: 573 KTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHE 632
+VD +QGREK+ II++ VRSN + IGFL D RRLNV++TRAK L++VG++ L+ H+
Sbjct: 798 ASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLVLVGNAKVLARHD 857
Query: 633 TYKKMIEFFKEKGCFIEFPFS 653
+ ++I +K K E P +
Sbjct: 858 LWHELINHYKSKEMLYEGPIN 878
>gi|6323726 putative helicase; Nam7p [Saccharomyces cerevisiae]
>gi|400350|sp|P30771|NAM7_YEAST NAM7 PROTEIN
(NONSENSE-MEDIATED MRNA DECAY PROTEIN 1) (UP-FRAMESHIFT
SUPPRESSOR 1) >gi|83347|pir||S23408 prematurely
terminated mRNA decay factor NAM7 - yeast
(Saccharomyces cerevisiae) >gi|4023|emb|CAA44266.1|
(X62394) helicase [Saccharomyces cerevisiae]
>gi|173142|gb|AAA35197.1| (M76659) zinc finger protein
[Saccharomyces cerevisiae] >gi|807962|emb|CAA89226.1|
(Z49259) Nam7p [Saccharomyces cerevisiae]
Length = 971
Score = 202 bits (508), Expect = 1e-50
Identities = 167/501 (33%), Positives = 242/501 (47%), Gaps = 83/501 (16%)
Query: 165 VPFDKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVK-RGNKVLATAES 223
+P LN SQ A+S L L+ GP GTGKT T ++ K +++L A S
Sbjct: 403 IPNFAQLNSSQSNAVSHVL-QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 461
Query: 224 NVAVDNLVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLA 283
NVAVD+L +L G+K+VR+ SR + LA H L G
Sbjct: 462 NVAVDHLAAKLRDLGLKVVRLTAKSREDVESSVSNLAL----HNLVG------------- 504
Query: 284 EKRDTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDA 343
RGA+G L+ E +L+ K F
Sbjct: 505 -----------------------------RGAKGELKNLLKLKDEVGELSASDTKRFV-- 533
Query: 344 RKLEERIARDIIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNK-VE 402
KL + +I+ +ADVV T A + +D + +IDE+TQ++ P LIP+ K +
Sbjct: 534 -KLVRKTEAEILNKADVVCCTCVGAGDKRLD-TKFRTVLIDESTQASEPECLIPIVKGAK 591
Query: 403 RFVLAGDHKQLPPTILSLEAQE--LSRTLFEGLIE--RYPWKSEMLVVQYRMNERIMEFP 458
+ +L GDH+QL P IL +A + L ++LFE LI P + E VQYRMN + EFP
Sbjct: 592 QVILVGDHQQLGPVILERKAADAGLKQSLFERLISLGHVPIRLE---VQYRMNPYLSEFP 648
Query: 459 SKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRR 518
S FY G + G+T+ + PN + + ++ + + + E
Sbjct: 649 SNMFYEGSL-----QNGVTIE---QRTVPNSKFPWPIRGIPMMFWANYGREEIS-----A 695
Query: 519 GSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISMKVPED--------- 569
S N +EA +I+ KL GVKPE IGVITPY+ QR I + +
Sbjct: 696 NGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYI 755
Query: 570 -VEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTL 628
VEV +VD +QGREK+ IILS VR+N+ IGFL+D RRLNV LTRAK L+++G+ +L
Sbjct: 756 KVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSL 815
Query: 629 SSHETYKKMIEFFKEKGCFIE 649
+ + + ++ F+EKGC +E
Sbjct: 816 ARNTLWNHLLIHFREKGCLVE 836
>dbj|BAB10240.1| (AB013394) prematurely terminated mRNA decay factor-like protein
[Arabidopsis thaliana]
Length = 1235
Score = 200 bits (504), Expect = 3e-50
Identities = 167/505 (33%), Positives = 245/505 (48%), Gaps = 79/505 (15%)
Query: 165 VPFDKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGN-KVLATAES 223
VP LN SQ A+ L + L+ GP GTGKT T ++ K+G +VL A S
Sbjct: 480 VPGLPELNASQVNAVKSVL-QKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 538
Query: 224 NVAVDNLVERLSRSGIKIVRIGHPSR--VSKHLHETTLAYLITQHELYGELRELRVIGQS 281
NVAVD L E++S +G+K+VR+ SR VS + TL Y + +H E EL + Q
Sbjct: 539 NVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEYLTLHYQV-RHLDTSEKSELHKLQQ- 596
Query: 282 LAEKRDTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFD 341
L DE+ +L+ +K +
Sbjct: 597 ------------------LKDEQG-------------------------ELSSSDEKKYK 613
Query: 342 DARKLEERIARDIIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNK- 400
+ ++ ER +I + ADV+ T AA + + +IDE+TQ+T P LIPL
Sbjct: 614 NLKRATER---EITQSADVICCTCVGAADLRLSNFRFRQVLIDESTQATEPECLIPLVLG 670
Query: 401 VERFVLAGDHKQLPPTILSLEAQE--LSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFP 458
V++ VL GDH QL P I+ +A L+++LFE L+ K L VQYRM+ + EFP
Sbjct: 671 VKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVT-LGIKPIRLQVQYRMHPALSEFP 729
Query: 459 SKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRR 518
S FY G + G+T+ +E Q+ + + + ++ + E
Sbjct: 730 SNSFYEGTL-----QNGVTI---IERQTTGIDFPWPVPNRPMFFYVQLGQEEIS-----A 776
Query: 519 GSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLI----------SMKVPE 568
S N EA V K+V L GV P IGVITPY+ QR I ++ +
Sbjct: 777 SGTSYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYK 836
Query: 569 DVEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTL 628
++EV +VD +QGREK+ IILS VRSN+ IGFL D RRLNV+LTRA+ ++++G+ L
Sbjct: 837 EIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVL 896
Query: 629 SSHETYKKMIEFFKEKGCFIEFPFS 653
S + ++ +KE C +E P +
Sbjct: 897 SKQPLWNGLLTHYKEHECLVEGPLN 921
>pir||T40065 tRNA-splicing endonuclease positive effector - fission yeast
(Schizosaccharomyces pombe) >gi|4007798|emb|CAA22438.1|
(AL034463) tRNA-splicing endonuclease positive effector
[Schizosaccharomyces pombe]
Length = 1944
Score = 197 bits (496), Expect = 3e-49
Identities = 158/530 (29%), Positives = 258/530 (47%), Gaps = 80/530 (15%)
Query: 171 LNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRG---------------- 214
+N Q AI + ++ F L+ GP GTGKT+T++ +I +
Sbjct: 1271 VNEPQAYAIYASSVNDGFTLIQGPPGTGKTKTILGMIGAVLTSSSQGLQFNVPGQTRKTS 1330
Query: 215 -NKVLATAESNVAVDNLVERLS-----RSGIK----IVRIGHPSRVSKHLHETTLA-YLI 263
NK+L A SN A+D ++ R+ GIK ++R+G +S H E TL +I
Sbjct: 1331 KNKILICAPSNAAIDEILLRIKAGVYDHEGIKFFPKVIRVGFGDSISVHAKEFTLEEQMI 1390
Query: 264 TQHELYGELRELRVIGQSLAEKR-DTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSARL 322
Q EL ++ S K+ D+ K R L E+ R S+ L
Sbjct: 1391 KQMELTNLKKDQEANNSSDTRKKYDSIIKKRDSLREDL---------EKFRSTGKNSSIL 1441
Query: 323 IMEMAEWIKLNRQVQKAFDDARK-----------LEERIARDIIREADVVLTTNSSAALE 371
++ E K ++++ DD R+ L+++I +++EAD+V T S++ E
Sbjct: 1442 EAQLREITKQKNMLEQSLDDMRERQRSTNRNLDVLKKQIQNQLLQEADIVCATLSASGHE 1501
Query: 372 VVDYD--TYDVAIIDEATQSTIPSILIPLNK-VERFVLAGDHKQLPPTILSLEAQEL--S 426
++ T+ IIDEA Q+ S +IPL E V+ GD QLPPT+LS + + S
Sbjct: 1502 LLLNAGLTFRTVIIDEAAQAVELSSIIPLKYGCESCVMVGDPNQLPPTVLSKTSAKFGYS 1561
Query: 427 RTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQS 486
++L+ + +++ + +L +QYRMN I FPSK FY K++ ++ +T R ++
Sbjct: 1562 QSLYVRMFKQHNESACLLSIQYRMNPEISRFPSKFFYNSKLLDGPNMSAVTSRPW--HED 1619
Query: 487 PNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKP 546
P + N F + S+S N EA + + ++L+ +
Sbjct: 1620 PQLGIYRFFNVHGTEAFSN--------------SKSLYNVEEASFILLLYERLIQCYLNI 1665
Query: 547 EW---IGVITPYDDQRDLISMK--------VPEDVEVKTVDGYQGREKEVIILSLVRSNK 595
++ IGV+TPY Q + + + + +++ TVDG+QG+EK++II S VRS+
Sbjct: 1666 DFEGKIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVRSSM 1725
Query: 596 LGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFFKEKG 645
G IGFL+DLRRLNV+LTRAK L +VG+S L + + +IE K +G
Sbjct: 1726 SGGIGFLQDLRRLNVALTRAKSSLYIVGNSKPLMQEDIFYSLIEDAKTRG 1775
>gb|AAB94785.1| (AC003972) pNORF1 [Homo sapiens] >gi|3328175|gb|AAC26788.1|
(AF074016) nonsense-mediated mRNA decay trans-acting
factor [Homo sapiens]
Length = 1118
Score = 192 bits (484), Expect = 7e-48
Identities = 159/497 (31%), Positives = 246/497 (48%), Gaps = 77/497 (15%)
Query: 171 LNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGN-KVLATAESNVAVDN 229
LN SQ A+ L L+ GP GTGKT T ++ ++GN VL A SN+AVD
Sbjct: 471 LNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ 529
Query: 230 LVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTY 289
L E++ ++G+K+VR+ SR + + LA L+ ++R +
Sbjct: 530 LTEKIHQTGLKVVRLCAKSREAIDSPVSFLA-------LHNQIRNMD------------- 569
Query: 290 TKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEER 349
S E+ KL + K E +L+ +K + R L+
Sbjct: 570 -----------SMPELQKLQQLKD--------------ETGELSSADEKRY---RALKRT 601
Query: 350 IARDIIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNK-VERFVLAG 408
R+++ ADV+ T A + + +IDE+TQ+T P ++P+ ++ +L G
Sbjct: 602 AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG 661
Query: 409 DHKQLPPTILSLEAQE--LSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGK 466
DH QL P ++ +A + LS++LFE L+ + L VQYRM+ + FPS FY G
Sbjct: 662 DHCQLGPVVMCKKAAKAGLSQSLFERLVV-LGIRPIRLQVQYRMHPALSAFPSNIFYEGS 720
Query: 467 IIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENP 526
+ G+T D V+ + + W + P+ + F T E E G+ S N
Sbjct: 721 L-----QNGVTAADRVK-KGFDFQWPQ---PDKPMFFYVTQGQE---EIASSGT-SYLNR 767
Query: 527 LEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISM----------KVPEDVEVKTVD 576
EA V KI KLL G KP+ IG+ITPY+ QR + K+ ++VE+ +VD
Sbjct: 768 TEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVD 827
Query: 577 GYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKK 636
+QGREK+ IILS VR+N+ IGFL D RRLNV+LTRA+ +I+VG+ LS +
Sbjct: 828 AFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNH 887
Query: 637 MIEFFKEKGCFIEFPFS 653
++ ++KE+ +E P +
Sbjct: 888 LLNYYKEQKVLVEGPLN 904
>gb|AAC51140.1| (U59323) type 1 RNA helicase pNORF1 [Homo sapiens]
Length = 1118
Score = 192 bits (484), Expect = 7e-48
Identities = 159/497 (31%), Positives = 246/497 (48%), Gaps = 77/497 (15%)
Query: 171 LNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGN-KVLATAESNVAVDN 229
LN SQ A+ L L+ GP GTGKT T ++ ++GN VL A SN+AVD
Sbjct: 471 LNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ 529
Query: 230 LVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTY 289
L E++ ++G+K+VR+ SR + + LA L+ ++R +
Sbjct: 530 LTEKIHQTGLKVVRLCAKSREAIDSPVSFLA-------LHNQIRNMD------------- 569
Query: 290 TKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEER 349
S E+ KL + K E +L+ +K + R L+
Sbjct: 570 -----------SMPELQKLQQLKD--------------ETGELSSADEKRY---RALKRT 601
Query: 350 IARDIIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNK-VERFVLAG 408
R+++ ADV+ T A + + +IDE+TQ+T P ++P+ ++ +L G
Sbjct: 602 AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG 661
Query: 409 DHKQLPPTILSLEAQE--LSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGK 466
DH QL P ++ +A + LS++LFE L+ + L VQYRM+ + FPS FY G
Sbjct: 662 DHCQLGPVVMCKKAAKAGLSQSLFERLVV-LGIRPIRLQVQYRMHPALSAFPSNIFYEGS 720
Query: 467 IIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENP 526
+ G+T D V+ + + W + P+ + F T E E G+ S N
Sbjct: 721 L-----QNGVTAADRVK-KGFDFQWPQ---PDKPMFFYVTQGQE---EIASSGT-SYLNR 767
Query: 527 LEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISM----------KVPEDVEVKTVD 576
EA V KI KLL G KP+ IG+ITPY+ QR + K+ ++VE+ +VD
Sbjct: 768 TEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVD 827
Query: 577 GYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKK 636
+QGREK+ IILS VR+N+ IGFL D RRLNV+LTRA+ +I+VG+ LS +
Sbjct: 828 AFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNH 887
Query: 637 MIEFFKEKGCFIEFPFS 653
++ ++KE+ +E P +
Sbjct: 888 LLNYYKEQKVLVEGPLN 904
>dbj|BAA19664.1| (D86988) KIAA0221 [Homo sapiens]
Length = 1129
Score = 192 bits (484), Expect = 7e-48
Identities = 159/497 (31%), Positives = 246/497 (48%), Gaps = 77/497 (15%)
Query: 171 LNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGN-KVLATAESNVAVDN 229
LN SQ A+ L L+ GP GTGKT T ++ ++GN VL A SN+AVD
Sbjct: 482 LNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ 540
Query: 230 LVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTY 289
L E++ ++G+K+VR+ SR + + LA L+ ++R +
Sbjct: 541 LTEKIHQTGLKVVRLCAKSREAIDSPVSFLA-------LHNQIRNMD------------- 580
Query: 290 TKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEER 349
S E+ KL + K E +L+ +K + R L+
Sbjct: 581 -----------SMPELQKLQQLKD--------------ETGELSSADEKRY---RALKRT 612
Query: 350 IARDIIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNK-VERFVLAG 408
R+++ ADV+ T A + + +IDE+TQ+T P ++P+ ++ +L G
Sbjct: 613 AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG 672
Query: 409 DHKQLPPTILSLEAQE--LSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGK 466
DH QL P ++ +A + LS++LFE L+ + L VQYRM+ + FPS FY G
Sbjct: 673 DHCQLGPVVMCKKAAKAGLSQSLFERLVV-LGIRPIRLQVQYRMHPALSAFPSNIFYEGS 731
Query: 467 IIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENP 526
+ G+T D V+ + + W + P+ + F T E E G+ S N
Sbjct: 732 L-----QNGVTAADRVK-KGFDFQWPQ---PDKPMFFYVTQGQE---EIASSGT-SYLNR 778
Query: 527 LEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISM----------KVPEDVEVKTVD 576
EA V KI KLL G KP+ IG+ITPY+ QR + K+ ++VE+ +VD
Sbjct: 779 TEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVD 838
Query: 577 GYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKK 636
+QGREK+ IILS VR+N+ IGFL D RRLNV+LTRA+ +I+VG+ LS +
Sbjct: 839 AFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNH 898
Query: 637 MIEFFKEKGCFIEFPFS 653
++ ++KE+ +E P +
Sbjct: 899 LLNYYKEQKVLVEGPLN 915
>sp|Q09820|YAC6_SCHPO HYPOTHETICAL 105.6 KD PROTEIN C16C9.06C IN CHROMOSOME I
>gi|2130283|pir||S62476 hypothetical protein
SPAC16C9.06c - fission yeast (Schizosaccharomyces
pombe)
Length = 935
Score = 191 bits (480), Expect = 2e-47
Identities = 164/510 (32%), Positives = 251/510 (49%), Gaps = 93/510 (18%)
Query: 165 VPFDKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELI-------RQEVKRGNKV 217
VP LN SQ +A+ +A+ S+ L+ GP GTGKT T ++ ++ K + V
Sbjct: 397 VPNLPKLNASQSEAV-RAVLSKPLSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPV 455
Query: 218 LATAESNVAVDNLVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRV 277
L A SNVAVD L E++ R+G+++VR+ SR E+++++L
Sbjct: 456 LVCAPSNVAVDQLAEKIHRTGLRVVRVAAKSREDI---ESSVSFL--------------- 497
Query: 278 IGQSLAEKRDTYTKPTPKFRRGL---SDEEIIKLAERKRGARGLSARLIMEMAEWIKLNR 334
SL E+ Y K P+ +R L S+ + + + K+ R+++ AE
Sbjct: 498 ---SLHEQIKNY-KFNPELQRLLKLRSENNELSIQDEKK------LRILVAAAE------ 541
Query: 335 QVQKAFDDARKLEERIARDIIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSI 394
++++R A V+ T A + + +IDEATQ++ P
Sbjct: 542 -----------------KELLRAAHVICCTCVGAGDRRISKYKFRSVLIDEATQASEPEC 584
Query: 395 LIPLNK-VERFVLAGDHKQLPPTILSLEAQ--ELSRTLFEGLI--ERYPWKSEMLVVQYR 449
+IPL ++ VL GDH+QL P +++ + LS++LFE LI P++ LVVQYR
Sbjct: 585 MIPLVLGAKQVVLVGDHQQLGPVVMNKKVALASLSQSLFERLIILGNSPFR---LVVQYR 641
Query: 450 MNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKA 509
M+ + EFPS FY G + G+T + + + + W + P++ ++F A
Sbjct: 642 MHPCLSEFPSNTFYEGTL-----QNGVTTSERIA-RHVDFPW---IQPDSPLMFY----A 688
Query: 510 ENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISMKVPED 569
E S N EA KIV L V PE IG++TPYD QR I + +
Sbjct: 689 NFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPEQIGIVTPYDGQRSYIVQYMQNN 748
Query: 570 ----------VEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKL 619
VEV +VD +QGREK+ IILS VRS++ IGF+ D RRLNV+LTRAK +
Sbjct: 749 GSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRLNVALTRAKYGV 808
Query: 620 IVVGDSSTLSSHETYKKMIEFFKEKGCFIE 649
IV+G+ L+ H + + KEKG +E
Sbjct: 809 IVLGNPKVLAKHALWYHFVLHCKEKGYLVE 838
>pir||T37779 probable regulator of nonsense transcript stability - fission yeast
(Schizosaccharomyces pombe) >gi|4894186|emb|CAA91194.2|
(Z54366) putative regulator of nonsense transcript
stability [Schizosaccharomyces pombe]
Length = 925
Score = 191 bits (480), Expect = 2e-47
Identities = 164/510 (32%), Positives = 251/510 (49%), Gaps = 93/510 (18%)
Query: 165 VPFDKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELI-------RQEVKRGNKV 217
VP LN SQ +A+ +A+ S+ L+ GP GTGKT T ++ ++ K + V
Sbjct: 387 VPNLPKLNASQSEAV-RAVLSKPLSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPV 445
Query: 218 LATAESNVAVDNLVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRV 277
L A SNVAVD L E++ R+G+++VR+ SR E+++++L
Sbjct: 446 LVCAPSNVAVDQLAEKIHRTGLRVVRVAAKSREDI---ESSVSFL--------------- 487
Query: 278 IGQSLAEKRDTYTKPTPKFRRGL---SDEEIIKLAERKRGARGLSARLIMEMAEWIKLNR 334
SL E+ Y K P+ +R L S+ + + + K+ R+++ AE
Sbjct: 488 ---SLHEQIKNY-KFNPELQRLLKLRSENNELSIQDEKK------LRILVAAAE------ 531
Query: 335 QVQKAFDDARKLEERIARDIIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSI 394
++++R A V+ T A + + +IDEATQ++ P
Sbjct: 532 -----------------KELLRAAHVICCTCVGAGDRRISKYKFRSVLIDEATQASEPEC 574
Query: 395 LIPLNK-VERFVLAGDHKQLPPTILSLEAQ--ELSRTLFEGLI--ERYPWKSEMLVVQYR 449
+IPL ++ VL GDH+QL P +++ + LS++LFE LI P++ LVVQYR
Sbjct: 575 MIPLVLGAKQVVLVGDHQQLGPVVMNKKVALASLSQSLFERLIILGNSPFR---LVVQYR 631
Query: 450 MNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKA 509
M+ + EFPS FY G + G+T + + + + W + P++ ++F A
Sbjct: 632 MHPCLSEFPSNTFYEGTL-----QNGVTTSERIA-RHVDFPW---IQPDSPLMFY----A 678
Query: 510 ENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISMKVPED 569
E S N EA KIV L V PE IG++TPYD QR I + +
Sbjct: 679 NFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPEQIGIVTPYDGQRSYIVQYMQNN 738
Query: 570 ----------VEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKL 619
VEV +VD +QGREK+ IILS VRS++ IGF+ D RRLNV+LTRAK +
Sbjct: 739 GSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRLNVALTRAKYGV 798
Query: 620 IVVGDSSTLSSHETYKKMIEFFKEKGCFIE 649
IV+G+ L+ H + + KEKG +E
Sbjct: 799 IVLGNPKVLAKHALWYHFVLHCKEKGYLVE 828
>gi|11426635 regulator of nonsense transcripts 1 [Homo sapiens]
Length = 1118
Score = 190 bits (478), Expect = 4e-47
Identities = 158/497 (31%), Positives = 246/497 (48%), Gaps = 77/497 (15%)
Query: 171 LNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNK-VLATAESNVAVDN 229
LN SQ A+ L L+ GP GTGKT T ++ ++G + VL A SN+AVD
Sbjct: 471 LNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSATIVYHLARQGCRPVLVCAPSNIAVDQ 529
Query: 230 LVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTY 289
L E++ ++G+K+VR+ SR + + LA L+ ++R +
Sbjct: 530 LTEKIHQTGLKVVRLCAKSREAIDSPVSFLA-------LHNQIRNMD------------- 569
Query: 290 TKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEER 349
S E+ KL + K E +L+ +K + R L+
Sbjct: 570 -----------SMPELQKLQQLKD--------------ETGELSSADEKRY---RALKRT 601
Query: 350 IARDIIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNK-VERFVLAG 408
R+++ ADV+ T A + + +IDE+TQ+T P ++P+ ++ +L G
Sbjct: 602 AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG 661
Query: 409 DHKQLPPTILSLEAQE--LSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGK 466
DH QL P ++ +A + LS++LFE L+ + L VQYRM+ + FPS FY G
Sbjct: 662 DHCQLGPVVMCKKAAKAGLSQSLFERLVV-LGIRPIRLQVQYRMHPALSAFPSNIFYEGS 720
Query: 467 IIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENP 526
+ G+T D V+ + + W + P+ + F T E E G+ S N
Sbjct: 721 L-----QNGVTAADRVK-KGFDFQWPQ---PDKPMFFYVTQGQE---EIASSGT-SYLNR 767
Query: 527 LEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISM----------KVPEDVEVKTVD 576
EA V KI KLL G KP+ IG+ITPY+ QR + K+ ++VE+ +VD
Sbjct: 768 TEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVD 827
Query: 577 GYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKK 636
+QGREK+ IILS VR+N+ IGFL D RRLNV+LTRA+ +I+VG+ LS +
Sbjct: 828 AFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNH 887
Query: 637 MIEFFKEKGCFIEFPFS 653
++ ++KE+ +E P +
Sbjct: 888 LLNYYKEQKVLVEGPLN 904
>gi|4506479 regulator of nonsense transcripts 1 [Homo sapiens]
>gi|1575536|gb|AAC50771.1| (U65533) regulator of
nonsense transcript stability [Homo sapiens]
Length = 1118
Score = 190 bits (477), Expect = 5e-47
Identities = 159/497 (31%), Positives = 245/497 (48%), Gaps = 77/497 (15%)
Query: 171 LNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGN-KVLATAESNVAVDN 229
LN SQ A+ L L+ GP GTGKT T ++ ++ N VL A SN+AVD
Sbjct: 471 LNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSATIVYHLARQDNGPVLVCAPSNIAVDQ 529
Query: 230 LVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTY 289
L E++ ++G+K+VR+ SR + + LA L+ ++R +
Sbjct: 530 LTEKIHQTGLKVVRLCPKSREAIDSPVSFLA-------LHNQIRNMD------------- 569
Query: 290 TKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEER 349
S E+ KL + K E +L+ +K + R L+
Sbjct: 570 -----------SMPELQKLQQLKD--------------ETGELSSADEKRY---RALKRT 601
Query: 350 IARDIIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNK-VERFVLAG 408
R+++ ADV+ T A + + +IDE+TQ+T P ++P+ ++ +L G
Sbjct: 602 AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG 661
Query: 409 DHKQLPPTILSLEAQE--LSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGK 466
DH QL P ++ +A + LS++LFE L+ + L VQYRM+ + FPS FY G
Sbjct: 662 DHCQLGPVVMCKKAAKAGLSQSLFERLVV-LGIRPIRLQVQYRMHPALSAFPSNIFYEGS 720
Query: 467 IIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENP 526
+ G+T D V+ + + W + P+ + F T E E G+ S N
Sbjct: 721 L-----QNGVTAADRVK-KGFDFQWPQ---PDKPMFFYVTQGQE---EIASSGT-SYLNR 767
Query: 527 LEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISM----------KVPEDVEVKTVD 576
EA V KI KLL G KP+ IG+ITPY+ QR + K+ ++VE+ +VD
Sbjct: 768 TEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVD 827
Query: 577 GYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKK 636
+QGREK+ IILS VR+N+ IGFL D RRLNV+LTRA+ +I+VG+ LS +
Sbjct: 828 AFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNH 887
Query: 637 MIEFFKEKGCFIEFPFS 653
++ F+KE+ +E P +
Sbjct: 888 LLIFYKEQKVLVEGPLN 904
>sp|Q92355|YDHA_SCHPO HYPOTHETICAL 192.5 KD PROTEIN C6G9.10C IN CHROMOSOME I
>gi|7490496|pir||T39072 DNA2-NAM7 helicase family protein
- fission yeast (Schizosaccharomyces pombe)
>gi|1644322|emb|CAB03612.1| (Z81317) DNA2-NAM7 helicase
family protein [Schizosaccharomyces pombe]
Length = 1687
Score = 184 bits (462), Expect = 3e-45
Identities = 169/606 (27%), Positives = 284/606 (45%), Gaps = 95/606 (15%)
Query: 103 IVVALETVPEWALRDVRIDLYANDITFRRWLENLNTIKK--AGKRALRFYLGLDE----- 155
++V L T+P + + L N + L NL T + AG R L ++ D+
Sbjct: 1052 VLVVLRTLPSMEILN---KLQGNCALWFLKLTNLATFTRQYAGIRGLPYFHLADDIIRAR 1108
Query: 156 ------PSQGEEVNFVPFDKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRT------- 202
E+ +N Q KAI AL + F L+ GP GTGKT+T
Sbjct: 1109 PCSQPVKHSSSEIKAAMKRYQVNEPQAKAIMCALDNNGFTLIQGPPGTGKTKTIIGIISA 1168
Query: 203 -LVELIRQEVKRGNK----------VLATAESNVAVDNLVERLSRSGI---------KIV 242
LV+L R + R N+ +L A SN AVD ++ RL R + ++V
Sbjct: 1169 LLVDLSRYHITRPNQQSKSTESKQQILLCAPSNAAVDEVLLRLKRGFLLENGEKYIPRVV 1228
Query: 243 RIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIG--QSLAEKRDTYTKPTPKFRRGL 300
RIG+P ++ + + +L Y T+ +L + +G Q L RDT+ K
Sbjct: 1229 RIGNPETINVSVRDLSLEYQ-TEKQLLEVNQGAIDLGSLQELTRWRDTFYDCIQKI---- 1283
Query: 301 SDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARK-----------LEER 349
EE+ K + R + L E+ I ++ ++ + L ++
Sbjct: 1284 --EELEKQIDVARDVAEDTKSLGKELQNKINEKNLAEQKVEELQSQSFTKNKEVDLLRKK 1341
Query: 350 IARDIIREADVVLTTNSSAALEVVDYDT--YDVAIIDEATQSTIPSILIPLNK-VERFVL 406
+ I+++ADVV T S + ++V + + + IIDEA Q+ +IPL ++ +L
Sbjct: 1342 AQKAILKQADVVCATLSGSGHDLVAHSSLNFSTVIIDEAAQAVELDTIIPLRYGAKKCIL 1401
Query: 407 AGDHKQLPPTILSLEAQEL--SRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYG 464
GD QLPPT+LS +A L S++LF + + + + +L +QYRM+ I FPSK+FY
Sbjct: 1402 VGDPNQLPPTVLSKKAASLNYSQSLFVRIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYD 1461
Query: 465 GKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRE 524
++ +++ + W +NP+ F + + + + + S
Sbjct: 1462 SRLEDGDNMA----------EKTQQVWH--VNPK----FTQYRLFDVRGKERTSNTMSTY 1505
Query: 525 NPLEAEIVAKIVDKLLSIGVKPEW---IGVITPYDDQ----RDLISMKVPED----VEVK 573
N E E + +VD+LL+ + IGVITPY Q R +K + ++++
Sbjct: 1506 NLEEVEYLVNMVDELLNKFPDVNFTGRIGVITPYRSQLHELRRAFKVKYGKSFMSTIDIQ 1565
Query: 574 TVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHET 633
TVDG+QG+EK++I S V+S IGFL+D RRLNV+LTRA+ L+++G+ TL + +
Sbjct: 1566 TVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRARSSLLIIGNMETLKTDDL 1625
Query: 634 YKKMIE 639
+ +++
Sbjct: 1626 WGSLVD 1631
>emb|CAC10094.1| (AL442164) related to SEN1 protein [Neurospora crassa]
Length = 1825
Score = 174 bits (437), Expect = 2e-42
Identities = 178/666 (26%), Positives = 301/666 (44%), Gaps = 130/666 (19%)
Query: 72 EISVGDLVVISK-RDPLK--------SDLLGTVVEKGKRFIVVALETVPEWALRDVRIDL 122
++S GD+V+ISK ++PL+ S + T +K +V L L + L
Sbjct: 1033 QLSEGDIVIISKGQNPLQEPEELHCLSRIWKTTYKKDNVEVVYRLNAKGNQILPAL---L 1089
Query: 123 YANDITFRRWLENLNTIKK--AGKRALRFYLGLDEPSQGEEVNFVPFDK----------S 170
++ T + + N+ TI++ A +L++Y +DE + E + F + +
Sbjct: 1090 PGSEFTVVK-ITNMTTIEREYAALESLQYYDLMDEVLRAEPSPMLSFGEENIKNTMKNWN 1148
Query: 171 LNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELI----------------------- 207
LN Q KAI A ++ F L+ GP GTGKT+T+V ++
Sbjct: 1149 LNPGQAKAILNAKENDGFTLIQGPPGTGKTKTIVAMVGCLLTGVLKNPTAGVAIGRPGLG 1208
Query: 208 -RQEVKRGNKVLATAESNVAVDNLVERLSRSGIK----------IVRIGHPSRVSKHLHE 256
+ K+L A SN AVD LV RL ++G+K +VR+G ++ + +
Sbjct: 1209 AAKNNAPAKKLLVCAPSNAAVDELVLRL-KNGVKTQNGTTHQIEVVRLGRSDAINSAVKD 1267
Query: 257 TTLAYLI---------------TQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGLS 301
TL L+ + +L+ E E++ Q +AE R P + R +
Sbjct: 1268 VTLDELVKAKLEAQLNKDEGPTDREKLHQEAGEIK---QKIAELR-----PQLEAARTID 1319
Query: 302 DEEIIKLAER-----KRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEERIARDIIR 356
D +++ +R KR + AR+ + A R+ + ++ ++I+
Sbjct: 1320 DRQLVNKYQREFDELKRRQAHIGARIDADKASGNTFARETEIK-------RRQVQQEILD 1372
Query: 357 EADVVLTTNSSAALEV-----VDYDTYDVAIIDEATQSTIPSILIPLN-KVERFVLAGDH 410
+A V+ T S + E+ V+++T IIDEA Q S LIPL + +L GD
Sbjct: 1373 KAQVLCATLSGSGHEMFKNLNVEFET---VIIDEAAQCVELSALIPLKYGCSKCILVGDP 1429
Query: 411 KQLPPTILSLEAQE--LSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKII 468
KQLPPT+LS A ++LF + + + +L QYRM+ I FP FY G +
Sbjct: 1430 KQLPPTVLSQSAARYGYDQSLFVRMQKNHEKDVHLLDTQYRMHPEISSFPRAAFYEGLLQ 1489
Query: 469 ADESVRGITLRDLVEYQSPNDSWGK--ILNPENVIVFIDTSKAENKWERQRRGSESRENP 526
+ + +S W + +L P F D ++ + + + E
Sbjct: 1490 DGDDMA----------KSRLQPWHRSTLLGPYR---FFDVRGSQERGPKNQSLVNEEELK 1536
Query: 527 LEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQ----RDLISMK----VPEDVEVKTVDGY 578
+ ++ + ++ +K + IG+ITPY Q R + + + +++E T D +
Sbjct: 1537 VAMQLYRRFKADYGNVDLKGK-IGIITPYKAQLYRLRSQFAQRFGDAITDEIEFNTTDAF 1595
Query: 579 QGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMI 638
QGRE E+II S VR++ G IGF+ D+RR+NV LTRA+ L ++GDS L E + K+I
Sbjct: 1596 QGRECEIIIFSCVRASPTGGIGFMTDIRRMNVGLTRARSSLWILGDSRALMQGEFWAKLI 1655
Query: 639 EFFKEK 644
E K +
Sbjct: 1656 EDSKRR 1661
>gb|AAB63976.1| (M74589) SEN1 [Saccharomyces cerevisiae]
Length = 2112
Score = 167 bits (419), Expect = 3e-40
Identities = 155/549 (28%), Positives = 259/549 (46%), Gaps = 84/549 (15%)
Query: 161 EVNFVPFDKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELI------------- 207
E+ V LN SQ +AI ++ E F L+ GP GTGKT+T++ +I
Sbjct: 1206 EIETVKKSYKLNTSQAEAIVNSVSKEGFSLIQGPPGTGKTKTILGIIGYFLSTKNASSSN 1265
Query: 208 ------------RQEVKRGNKVLATAESNVAVDNLVERLSRSGI----------KIVRIG 245
+++ + K+L A SN AVD + RL +SG+ ++VR+G
Sbjct: 1266 VIKVPLEKNSSNTEQLLKKQKILICAPSNAAVDEICLRL-KSGVYDKQGHQFKPQLVRVG 1324
Query: 246 HPSRVSKHLHETTLAYLITQ------HELYGELRELRVIGQSLAEKRDTYTKPTPKF--- 296
V+ + + TL L+ + +E+ + R ++ ++R+ K +
Sbjct: 1325 RSDVVNVAIKDLTLEELVDKRIGERNYEIRTDPELERKFNNAVTKRRELRGKLDSESGNP 1384
Query: 297 RRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEERIAR-DII 355
+S E+I KL + R +++I E+ R+ R L+ R A+ I+
Sbjct: 1385 ESPMSTEDISKLQLKIREL----SKIINELGRDRDEMREKNSVNYRNRDLDRRNAQAHIL 1440
Query: 356 READVVLTTNSSAALEVVDYD--TYDVAIIDEATQSTIPSILIPLNKV-ERFVLAGDHKQ 412
+D++ +T S +A +V+ +D IIDEA Q T S +IPL +R ++ GD Q
Sbjct: 1441 AVSDIICSTLSGSAHDVLATMGIKFDTVIIDEACQCTELSSIIPLRYGGKRCIMVGDPNQ 1500
Query: 413 LPPTILSLEAQELSRTLFEGLIERYPWKSE--MLVVQYRMNERIMEFPSKEFYGGKIIAD 470
LPPT+LS A + L R S +L VQYRM+ I +FPS EFY G++
Sbjct: 1501 LPPTVLSGAASNFKYN--QSLFVRMEKNSSPYLLDVQYRMHPSISKFPSSEFYQGRLKDG 1558
Query: 471 ESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAE 530
+ + R W + L P F D + Q + S N E
Sbjct: 1559 PGMDILNKRP----------WHQ-LEPLAPYKFFDIISGR---QEQNAKTMSYTNMEEIR 1604
Query: 531 IVAKIVDKLL-SIGVKPEW---IGVITPYDDQRDLISMK--------VPEDVEVKTVDGY 578
+ ++VD L K ++ IG+I+PY +Q + + + + ++ T+DG+
Sbjct: 1605 VAIELVDYLFRKFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGF 1664
Query: 579 QGREKEVIILSLVRSNKL-GEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKM 637
QG+EKE+I++S VR++ +GFLKD RR+NV+LTRAK + V+G +L+ + ++ +
Sbjct: 1665 QGQEKEIILISCVRADDTKSSVGFLKDFRRMNVALTRAKTSIWVLGHQRSLAKSKLWRDL 1724
Query: 638 IEFFKEKGC 646
IE K++ C
Sbjct: 1725 IEDAKDRSC 1733
>gi|6323462 component of a nuclear-localized tRNA splicing complex; Sen1p
[Saccharomyces cerevisiae]
>gi|3123282|sp|Q00416|SEN1_YEAST TRNA-SPLICING
ENDONUCLEASE POSITIVE EFFECTOR >gi|1078364|pir||S53416
SEN1 protein - yeast (Saccharomyces cerevisiae)
>gi|664872|gb|AAB67502.1| (U20939) Sen1p [Saccharomyces
cerevisiae]
Length = 2231
Score = 167 bits (419), Expect = 3e-40
Identities = 155/549 (28%), Positives = 259/549 (46%), Gaps = 84/549 (15%)
Query: 161 EVNFVPFDKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELI------------- 207
E+ V LN SQ +AI ++ E F L+ GP GTGKT+T++ +I
Sbjct: 1325 EIETVKKSYKLNTSQAEAIVNSVSKEGFSLIQGPPGTGKTKTILGIIGYFLSTKNASSSN 1384
Query: 208 ------------RQEVKRGNKVLATAESNVAVDNLVERLSRSGI----------KIVRIG 245
+++ + K+L A SN AVD + RL +SG+ ++VR+G
Sbjct: 1385 VIKVPLEKNSSNTEQLLKKQKILICAPSNAAVDEICLRL-KSGVYDKQGHQFKPQLVRVG 1443
Query: 246 HPSRVSKHLHETTLAYLITQ------HELYGELRELRVIGQSLAEKRDTYTKPTPKF--- 296
V+ + + TL L+ + +E+ + R ++ ++R+ K +
Sbjct: 1444 RSDVVNVAIKDLTLEELVDKRIGERNYEIRTDPELERKFNNAVTKRRELRGKLDSESGNP 1503
Query: 297 RRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEERIAR-DII 355
+S E+I KL + R +++I E+ R+ R L+ R A+ I+
Sbjct: 1504 ESPMSTEDISKLQLKIREL----SKIINELGRDRDEMREKNSVNYRNRDLDRRNAQAHIL 1559
Query: 356 READVVLTTNSSAALEVVDYD--TYDVAIIDEATQSTIPSILIPLNKV-ERFVLAGDHKQ 412
+D++ +T S +A +V+ +D IIDEA Q T S +IPL +R ++ GD Q
Sbjct: 1560 AVSDIICSTLSGSAHDVLATMGIKFDTVIIDEACQCTELSSIIPLRYGGKRCIMVGDPNQ 1619
Query: 413 LPPTILSLEAQELSRTLFEGLIERYPWKSE--MLVVQYRMNERIMEFPSKEFYGGKIIAD 470
LPPT+LS A + L R S +L VQYRM+ I +FPS EFY G++
Sbjct: 1620 LPPTVLSGAASNFKYN--QSLFVRMEKNSSPYLLDVQYRMHPSISKFPSSEFYQGRLKDG 1677
Query: 471 ESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAE 530
+ + R W + L P F D + Q + S N E
Sbjct: 1678 PGMDILNKRP----------WHQ-LEPLAPYKFFDIISGR---QEQNAKTMSYTNMEEIR 1723
Query: 531 IVAKIVDKLL-SIGVKPEW---IGVITPYDDQRDLISMK--------VPEDVEVKTVDGY 578
+ ++VD L K ++ IG+I+PY +Q + + + + ++ T+DG+
Sbjct: 1724 VAIELVDYLFRKFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGF 1783
Query: 579 QGREKEVIILSLVRSNKL-GEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKM 637
QG+EKE+I++S VR++ +GFLKD RR+NV+LTRAK + V+G +L+ + ++ +
Sbjct: 1784 QGQEKEIILISCVRADDTKSSVGFLKDFRRMNVALTRAKTSIWVLGHQRSLAKSKLWRDL 1843
Query: 638 IEFFKEKGC 646
IE K++ C
Sbjct: 1844 IEDAKDRSC 1852
>gb|AAG19799.1| (AE005064) DNA helicase; Hel [Halobacterium sp. NRC-1]
Length = 821
Score = 167 bits (418), Expect = 4e-40
Identities = 109/287 (37%), Positives = 155/287 (53%), Gaps = 22/287 (7%)
Query: 355 IREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNKVERFVLAGDHKQLP 414
+R A VV T ++ ++ +DV ++DEA+Q T P L +N+ RFVL GDH+QLP
Sbjct: 552 LRSAPVVAATTATCGSRILRELEFDVVLVDEASQLTEPDTLAAINRGARFVLVGDHEQLP 611
Query: 415 PTILSLEAQELSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKI-IADESV 473
P + S LS++LFE L E YP S ML QYRM++RI F S+EFY G++ A V
Sbjct: 612 PVVRS--GGRLSKSLFERLHETYPEASVMLDQQYRMSQRIQAFSSREFYDGQLRPASSEV 669
Query: 474 RGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVA 533
G L D+ D G + + F D + ++ +P EA+ VA
Sbjct: 670 AGQRLTDV-----GVDPGGAV---HGGVTFYDVPGTD----------DAHVDPAEADRVA 711
Query: 534 KIVDKLLSIGVKPEWIGVITPYDDQRDLISMKVPEDVEVKTVDGYQGREKEVIILSLVRS 593
+V + G+ P IGVI P+ Q I + P V V TVD +QG KEVI++S V
Sbjct: 712 DVVTAYVDAGLDPGEIGVIAPFRAQVAEIGRRTPAGVAVDTVDRFQGSSKEVIVVSFVAR 771
Query: 594 NKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEF 640
L E +D RR+NV+L+RAK+ L++VGD L S Y +MI++
Sbjct: 772 GTL-EGPIFEDHRRVNVALSRAKKSLVLVGDERALRSEPLYDRMIDW 817
Score = 86.2 bits (210), Expect = 1e-15
Identities = 81/283 (28%), Positives = 137/283 (47%), Gaps = 12/283 (4%)
Query: 5 SFINRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGE-ELGYFLVKY 63
++ + L + +E ER A + R ++ S ER RA++ L+ E G + +
Sbjct: 289 AYFDELYDAIEAERGAIHDEYR-KLWEQSPDERAADDRAVVGLSPAEQTELPDGRWRLTA 347
Query: 64 GRNREIKTEISVGDLVVISKRDPLKSDLLGTVVEKGKRFIVVALETVPEWALRDVRIDLY 123
R ++I GD V+ S DP+ VE R +E + + R+D+Y
Sbjct: 348 TRPGSAASKIREGDRVLASDGDPVAGRAEMARVE---RLDADRVEVTTDEPVSLCRLDVY 404
Query: 124 ANDITFRRWLENLN-TIKKAGKRALRFYLGLDEPS-QGEEVNFVPFDKSLNRSQRKAISK 181
++++ R L L+ + K+ +R P +G + + +P N +Q A+++
Sbjct: 405 PSELSVDRMLTALHDAVLKSDQRRTDLLFDRASPRFEGGDHDLIPN----NDAQNAAVNR 460
Query: 182 ALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLATAESNVAVDNLVERLSRSGIK- 240
AL +EDF LVHGP GTGKT T+ L++ V RG++VL +A +N AVDN ++ L + G +
Sbjct: 461 ALNAEDFALVHGPPGTGKTYTIATLVQAFVARGDRVLVSAFTNRAVDNALDALRQQGHED 520
Query: 241 IVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLA 283
IVR+G + V + + L E LR V+ + A
Sbjct: 521 IVRVGTETGVRADMQDLRLDRSGDPGERAAALRSAPVVAATTA 563
>gi|6321024 DNA Helicase I; Ecm32p [Saccharomyces cerevisiae]
>gi|418429|sp|P32644|YE06_YEAST HYPOTHETICAL 127.0 KD
PROTEIN IN RAD24-BMH1 INTERGENIC REGION
>gi|320741|pir||S30862 DNA dependent ATPase/DNA helicase
B - yeast (Saccharomyces cerevisiae)
>gi|603417|gb|AAB64703.1| (U18922) Yer176wp
[Saccharomyces cerevisiae]
Length = 1121
Score = 161 bits (402), Expect = 3e-38
Identities = 157/531 (29%), Positives = 238/531 (44%), Gaps = 125/531 (23%)
Query: 171 LNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNK--VLATAESNVAVD 228
LNRSQ+ A+ L + ++ GP GTGKT T+ E+I Q ++R + +L A SN+A+D
Sbjct: 649 LNRSQKTAVEHVLNNS-ITILQGPPGTGKTSTIEEIIIQVIERFHAFPILCVAASNIAID 707
Query: 229 NLVERL--SRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELR-ELRVIGQSLAEK 285
N+ E++ +R IKI+RI + ++ + L + + +Y L +++V+
Sbjct: 708 NIAEKIMENRPQIKILRILSKKKEQQYSDDHPLGEICLHNIVYKNLSPDMQVVAN----- 762
Query: 286 RDTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARK 345
K RRG E+I +E + K
Sbjct: 763 ---------KTRRG----EMISKSEDTK-----------------------------FYK 780
Query: 346 LEERIARDIIREADVVLTTNSSAA-LEVVDYDTYDVAIIDEATQSTIPSILIPLNK--VE 402
+ R+ ++ ++ ++ TTN +A E+ V I+DEATQS+ S L+PL+ +
Sbjct: 781 EKNRVTNKVVSQSQIIFTTNIAAGGRELKVIKECPVVIMDEATQSSEASTLVPLSLPGIR 840
Query: 403 RFVLAGDHKQLPPTILSLEAQELSRTLFEGLIERYPWKSE-MLVVQYRMNERIMEFPSKE 461
FV GD KQL +L +LFE ++ +K+ ML QYRM+ +I EFP K+
Sbjct: 841 NFVFVGDEKQLSSFS---NIPQLETSLFERVLSNGTYKNPLMLDTQYRMHPKISEFPIKK 897
Query: 462 FYGGKI---IADESVR--GITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQ 516
Y G++ + DE G+ L YQ ++ + + IV ENK E
Sbjct: 898 IYNGELKDGVTDEQKAWPGVQ-HPLFFYQCDLGPESRVRSTQRDIVGF---TYENKHEC- 952
Query: 517 RRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLIS------------- 563
EIV I +L V E IGVITPY QRDL+S
Sbjct: 953 ------------VEIVKIIQILMLDKKVPLEEIGVITPYSAQRDLLSDILTKNVVINPKQ 1000
Query: 564 -----------------------------MKVPEDVEVKTVDGYQGREKEVIILSLVRSN 594
+ + + V TVD +QG EK II S VR+N
Sbjct: 1001 ISMQQEYDEIELFNAAGSQGTAGSLQNNVINIINGLHVATVDSFQGHEKSFIIFSCVRNN 1060
Query: 595 KLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHE-TYKKMIEFFKEK 644
+IGFL+D RRLNV+LTRAK LIVVG+ + L + +K I + +E+
Sbjct: 1061 TENKIGFLRDKRRLNVALTRAKHGLIVVGNKNVLRKGDPLWKDYITYLEEQ 1111
>pir||T39568 hypothetical helicase - fission yeast (Schizosaccharomyces pombe)
>gi|4481950|emb|CAB38508.1| (AL035637) dna replication
helicase [Schizosaccharomyces pombe]
Length = 1398
Score = 159 bits (397), Expect = 1e-37
Identities = 106/318 (33%), Positives = 168/318 (52%), Gaps = 22/318 (6%)
Query: 340 FDDARKLEERIARDIIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLN 399
FDD L+ + +V ++ + + +D IIDEA+Q +P L PL
Sbjct: 1027 FDDLASLKH-----FYEDPQIVACSSLGVYHSIFNKRKFDYCIIDEASQIPLPICLGPLQ 1081
Query: 400 KVERFVLAGDHKQLPPTILSLEAQE--LSRTLFEGLIERYPWKSEMLVVQYRMNERIMEF 457
E+FVL GDH QLPP + + + LS +LF+ L E++P L +QYRMNE I
Sbjct: 1082 LAEKFVLVGDHYQLPPLVKNSRTSKDGLSLSLFKLLSEKHPEAVTTLRLQYRMNEDINSL 1141
Query: 458 PSKEFYGGKIIADES--------VRGITLRDLVEYQSPNDSW-GKILNPENVIVFIDTSK 508
S+ YGG ++ + L D + S + W K++NP + ++F +T
Sbjct: 1142 SSELIYGGNLVCGSKTISQKKLILPKAHLSDGLPDSSSSLHWVNKLINPSHSVIFFNT-- 1199
Query: 509 AENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLIS--MKV 566
++ + + + EN EA ++ + V L GVK IG+I+ Y Q +L+S +K
Sbjct: 1200 -DDILGVESKTNNILENHTEAFLIEQAVSSFLERGVKQSSIGIISIYKSQVELLSKNLKS 1258
Query: 567 PEDVEVKTVDGYQGREKEVIILSLVRSNKLGEIG-FLKDLRRLNVSLTRAKRKLIVVGDS 625
++E+ TVD YQGR+K++I++S VRSN +G L+D RLNV+L+RAK K I+ G
Sbjct: 1259 FTEIEINTVDRYQGRDKDIILISFVRSNSKNLVGELLRDWHRLNVALSRAKVKCIMFGSL 1318
Query: 626 STLSSHETYKKMIEFFKE 643
STLSS +++ ++
Sbjct: 1319 STLSSSNIVSHLLKLLEK 1336
>pir||T51292 Dna2p - fission yeast (Schizosaccharomyces pombe)
>gi|5052396|gb|AAD38528.1|AF144384_1 (AF144384) Dna2p
[Schizosaccharomyces pombe]
Length = 1397
Score = 159 bits (397), Expect = 1e-37
Identities = 106/318 (33%), Positives = 168/318 (52%), Gaps = 22/318 (6%)
Query: 340 FDDARKLEERIARDIIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLN 399
FDD L+ + +V ++ + + +D IIDEA+Q +P L PL
Sbjct: 1026 FDDLASLKH-----FYEDPQIVACSSLGVYHSIFNKRKFDYCIIDEASQIPLPICLGPLQ 1080
Query: 400 KVERFVLAGDHKQLPPTILSLEAQE--LSRTLFEGLIERYPWKSEMLVVQYRMNERIMEF 457
E+FVL GDH QLPP + + + LS +LF+ L E++P L +QYRMNE I
Sbjct: 1081 LAEKFVLVGDHYQLPPLVKNSRTSKDGLSLSLFKLLSEKHPEAVTTLRLQYRMNEDINSL 1140
Query: 458 PSKEFYGGKIIADES--------VRGITLRDLVEYQSPNDSW-GKILNPENVIVFIDTSK 508
S+ YGG ++ + L D + S + W K++NP + ++F +T
Sbjct: 1141 SSELIYGGNLVCGSKTISQKKLILPKAHLSDGLPDSSSSLHWVNKLINPSHSVIFFNT-- 1198
Query: 509 AENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLIS--MKV 566
++ + + + EN EA ++ + V L GVK IG+I+ Y Q +L+S +K
Sbjct: 1199 -DDILGVESKTNNILENHTEAFLIEQAVSSFLERGVKQSSIGIISIYKSQVELLSKNLKS 1257
Query: 567 PEDVEVKTVDGYQGREKEVIILSLVRSNKLGEIG-FLKDLRRLNVSLTRAKRKLIVVGDS 625
++E+ TVD YQGR+K++I++S VRSN +G L+D RLNV+L+RAK K I+ G
Sbjct: 1258 FTEIEINTVDRYQGRDKDIILISFVRSNSKNLVGELLRDWHRLNVALSRAKVKCIMFGSL 1317
Query: 626 STLSSHETYKKMIEFFKE 643
STLSS +++ ++
Sbjct: 1318 STLSSSNIVSHLLKLLEK 1335
>gb|AAF99770.1|AC003981_20 (AC003981) F22O13.33 [Arabidopsis thaliana]
Length = 865
Score = 158 bits (396), Expect = 2e-37
Identities = 117/326 (35%), Positives = 171/326 (51%), Gaps = 26/326 (7%)
Query: 312 KRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEERIARDIIREADVVLTTNSSAALE 371
K R LS +++E + K +V AF D +K +++ VV +T
Sbjct: 508 KNTCRELSFYVLVETRLYTKKFEKV--AFQDIKKKLDQVK--------VVASTCLGINSP 557
Query: 372 VVDYDTYDVAIIDEATQSTIPSILIPLNKVERFVLAGDHKQLPPTILSLEAQE--LSRTL 429
++ +DV IIDEA Q +P + PL FVL GDH QLPP + S EA+E + +L
Sbjct: 558 LLVNRRFDVCIIDEAGQIALPVSIGPLLFASTFVLVGDHYQLPPLVQSTEARENGMGISL 617
Query: 430 FEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADES-VRGITLRDLVEYQSPN 488
F L E +P +L QYRM IME + YG ++ + V TL ++ S
Sbjct: 618 FRRLSEAHPQAISVLQNQYRMCRGIMELSNALIYGDRLCCGSAEVADATL--VLSTSSST 675
Query: 489 DSW-GKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPE 547
W K+L P +VF++T + R + NP+EA I+A ++L++ GV +
Sbjct: 676 SPWLKKVLEPTRTVVFVNTDMLR---AFEARDQNAINNPVEASIIA---EELVNNGVDSK 729
Query: 548 WIGVITPYDDQRDLISMKVP-EDVEVKTVDGYQGREKEVIILSLVRSN---KLGEIGFLK 603
IG+ITPY+ Q LI +P VE+ T+D YQGR+K+ I++S VRS + L
Sbjct: 730 DIGIITPYNSQASLIQHAIPTTPVEIHTIDKYQGRDKDCILVSFVRSREKPRSSASSLLG 789
Query: 604 DLRRLNVSLTRAKRKLIVVGDSSTLS 629
D R+NV+LTRAK+KLI+VG TLS
Sbjct: 790 DWHRINVALTRAKKKLIMVGSQRTLS 815
>sp|P51530|Y083_HUMAN HYPOTHETICAL PROTEIN KIAA0083 >gi|11360302|pir||T50697 hypothetical
protein KIAA0083 [imported] - human (fragment)
>gi|1531548|dbj|BAA07647.1| (D42046) The ha3631 gene
product is related to S.cerevisiae protein encoded in
chromosome VIII. [Homo sapiens]
Length = 1077
Score = 158 bits (395), Expect = 2e-37
Identities = 110/310 (35%), Positives = 166/310 (53%), Gaps = 22/310 (7%)
Query: 360 VVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNKVERFVLAGDHKQLPPTILS 419
+V TT + +D I+DEA+Q + P L PL RFVL GDH+QLPP +L+
Sbjct: 755 IVATTCMGINHPIFSRKIFDFCIVDEASQISQPICLGPLFFSRRFVLVGDHQQLPPLVLN 814
Query: 420 LEAQEL--SRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKI------IADE 471
EA+ L S +LF+ L E+ L VQYRMN +IM +K Y GK+ +A+
Sbjct: 815 REARALGMSESLFKRL-EQNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANA 873
Query: 472 SVRGITLRDL---VEY---QSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESREN 525
+ +D+ +E+ S N + P N + F++T K E+ +G S N
Sbjct: 874 VINLRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCFLNTDKVPAP-EQVEKGGVS--N 930
Query: 526 PLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISMKVPED---VEVKTVDGYQGRE 582
EA+++ + + G P IG+I PY Q +I+ + VEV TVD YQGR+
Sbjct: 931 VTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLLARSIGMVEVNTVDKYQGRD 990
Query: 583 KEVIILSLVRSNKLGEIG-FLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFF 641
K ++++S VRSNK G +G LKD RRLNV++TRAK KLI++G +L+ + +K++
Sbjct: 991 KSIVLVSFVRSNKDGTVGELLKDWRRLNVAITRAKHKLILLGCVPSLNCYPPLEKLLNHL 1050
Query: 642 KEKGCFIEFP 651
+ I+ P
Sbjct: 1051 NSEKLIIDLP 1060
>pir||T08986 hypothetical protein F6G3.130 - Arabidopsis thaliana
>gi|4938486|emb|CAB43845.1| (AL078464) putative protein
[Arabidopsis thaliana] >gi|7269910|emb|CAB81003.1|
(AL161576) putative protein [Arabidopsis thaliana]
Length = 1311
Score = 157 bits (392), Expect = 5e-37
Identities = 147/482 (30%), Positives = 235/482 (48%), Gaps = 64/482 (13%)
Query: 216 KVLATAESNVAVDNLVERLSRSGI----------KIVRIGHPSRVSKHL-----HETTLA 260
++L A SN A D L+ R+ G + R+G ++ + L
Sbjct: 743 RMLVCAPSNAATDELLSRVLDRGFIDGEMRVYRPDVARVGVDTQTKAAQAVSVERRSDLL 802
Query: 261 YLITQHELYGELRELRVIGQSLAE-----KRDTYTKPTPKFRRGLS--DEEIIKLAERKR 313
++ E+ G + LRV L++ KR+ +G D +++ + ++ R
Sbjct: 803 LAKSREEILGHIHNLRVRDAQLSQDIAGLKRELTAAAFANRSQGSVGVDPDVLMVRDQTR 862
Query: 314 GA--RGLSARLIMEMAEWIKLNRQ--VQKAFDDARKLEERIAR-----DIIREADVVLTT 364
A + LSA + + ++++R V+ F AR EA++V TT
Sbjct: 863 DAMLQRLSAVVEARDKDLVEMSRLLIVEGKFRAGTSFNLEEARASLEASFANEAEIVFTT 922
Query: 365 NSSAALEVVDYDT--YDVAIIDEATQSTIPSILIPLNK-VERFVLAGDHKQLPPTILSLE 421
SS+ ++ T +D+ +IDEA Q++ +L PL R VL GD +QLP T++S
Sbjct: 923 VSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLALGAARCVLVGDPQQLPATVISKA 982
Query: 422 AQEL--SRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLR 479
A L SR+LFE + + +L VQYRM+ +I +FPS+ FY G++ ESV T
Sbjct: 983 AGTLLYSRSLFERF-QLAGCPTLLLTVQYRMHPQIRDFPSRYFYQGRLTDSESVS--TAP 1039
Query: 480 DLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAE----IVAKI 535
D + Y+ +L P +F D S E R GS S EN EA + +
Sbjct: 1040 DEIYYKD------SVLKP---YLFFDISHGR---ESHRGGSVSYENIDEARFCVGVYLHL 1087
Query: 536 VDKLLSIGVKPEWIGVITPYDDQR--------DLISMKVPEDVEVKTVDGYQGREKEVII 587
L S+G +GVITPY Q + +S +++ + TVD +QG+E++VII
Sbjct: 1088 QRTLKSLGGGKVSVGVITPYKLQLKCLKIEFGNALSQDELQEIYINTVDAFQGQERDVII 1147
Query: 588 LSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFFKEKGCF 647
+S VR++ G +GF+ D+RR+NV+LTRAKR L V+G++S L E + +I K + CF
Sbjct: 1148 MSCVRASNHG-VGFVADIRRMNVALTRAKRALWVMGNASALMKCEDWAALITDAKARNCF 1206
Query: 648 IE 649
+E
Sbjct: 1207 ME 1208
>pir||T26415 hypothetical protein Y106G6D.5 - Caenorhabditis elegans
>gi|3880678|emb|CAA20978.1| (AL031629) cDNA EST
EMBL:T00167 comes from this gene~cDNA EST yk384f3.3
comes from this gene~cDNA EST yk287a1.5 comes from this
gene~cDNA EST yk384f3.5 comes from this gene
[Caenorhabditis elegans]
Length = 693
Score = 153 bits (383), Expect = 5e-36
Identities = 97/294 (32%), Positives = 168/294 (56%), Gaps = 16/294 (5%)
Query: 360 VVLTTNSSAALEVVDYD-TYDVAIIDEATQSTIPSILIPL---NKVERFVLAGDHKQLPP 415
V T +S+ ++ +Y DV I+DEA Q T P+ +P+ ++ +L GD KQLP
Sbjct: 381 VFSTLGTSSIQKLPEYHWNADVMIVDEAAQCTEPATWVPVLTTPSCKKLILVGDQKQLPA 440
Query: 416 TILSLEAQE--LSRTLFEGLIERYPWKSEMLVV--QYRMNERIMEFPSKEFYGGKIIADE 471
+LS +A + +L E L E + + +++ QYRMN++IM + ++ FY ++ A
Sbjct: 441 VVLSDKAMKGNFKLSLMEKLAEEFSSNNINILLNEQYRMNKKIMNWSNEVFYENQLTAHS 500
Query: 472 SVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEI 531
+V ITLRD+ PN +LN N I+ I+ +++ + S S N E +
Sbjct: 501 TVSDITLRDIC----PNLPEDHVLN--NPIMMINMENVKDR-SHEEFESHSFTNTDELNL 553
Query: 532 VAKIVDKLL-SIGVKPEWIGVITPYDDQRDLISMKVPEDVEVKTVDGYQGREKEVIILSL 590
V + V++L+ +G+ P+ I VI+PY Q + + +P V+V TVD +QG E++V+I L
Sbjct: 554 VTEYVNRLVVDLGINPKAIAVISPYYAQIEKLRRSIPFRVDVNTVDAFQGHERQVVIFCL 613
Query: 591 VRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFFKEK 644
VR N G+IGFL + RRLNV++TRA+R+ +++G+ + ++ K+ + + +
Sbjct: 614 VRDNDEGQIGFLNETRRLNVAVTRARRQFVLIGNGRMMKGNKHLLKLYKHLQSE 667
>pir||T00533 SEN1 protein homolog T20K24.14 - Arabidopsis thaliana
>gi|3176714|gb|AAD12029.1| (AC002392) putative DNA2-NAM7
helicase family protein [Arabidopsis thaliana]
Length = 1090
Score = 152 bits (379), Expect = 2e-35
Identities = 147/483 (30%), Positives = 236/483 (48%), Gaps = 66/483 (13%)
Query: 216 KVLATAESNVAVDNLVERLSRSGI----------KIVRIGHPSR------VSKHLHETTL 259
++L A SN A D L+ R+ G + R+G S+ VS L
Sbjct: 580 RMLVCAPSNAATDELLSRVLDRGFIDGEMRVYRPDVARVGVDSQSRAAQAVSVERRSDQL 639
Query: 260 AYLITQHELYGELRELRV----IGQSLAE-KRDTYTKPTPKFRRGLS--DEEIIKLAERK 312
I++ E+ +R LR+ I Q++A KR+ +G D E++ ++K
Sbjct: 640 L-AISRDEILRHMRNLRLQETQISQNIAGLKRELNAAAFATRSQGSVGVDPEVLISRDQK 698
Query: 313 RGARGLSARLIMEMAE--WIKLNRQ--VQKAFDDARKLEERIAR-----DIIREADVVLT 363
R A ++E + ++++R V+ F AR EA++V T
Sbjct: 699 RDALLQHLAAVVEARDKVLVEISRLLIVEGKFRAGNNFNLEEARASLEASFANEAEIVFT 758
Query: 364 TNSSAALEVVDYDT--YDVAIIDEATQSTIPSILIPLNK-VERFVLAGDHKQLPPTILSL 420
T SS+ ++ T +D+ +IDEA Q++ +L PL R VL GD +QLP T++S
Sbjct: 759 TVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLALGAARCVLVGDPQQLPATVISK 818
Query: 421 EAQEL--SRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITL 478
A L SR+LFE + + +L VQYRM+ +I +FPS+ FY G++ ES+
Sbjct: 819 AAGTLLYSRSLFERF-QLAGCPTLLLTVQYRMHPQIRDFPSRYFYQGRLKDSESISSAP- 876
Query: 479 RDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAE----IVAK 534
D + Y+ P +L P +F + S E R GS S EN EA +
Sbjct: 877 -DEIYYKDP------VLRP---YLFFNISHGR---ESHRGGSVSYENVDEARFCVGVYMH 923
Query: 535 IVDKLLSIGVKPEWIGVITPYDDQRDLISMKVP--------EDVEVKTVDGYQGREKEVI 586
+ L S+G +GVITPY Q + + +++ + TVD +QG+E++VI
Sbjct: 924 LQKTLKSLGAGKVSVGVITPYKLQLKCLKHEFGNALGQDELKEIYINTVDAFQGQERDVI 983
Query: 587 ILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFFKEKGC 646
I+S VR++ G +GF+ D+RR+NV+LTRA+R L V+G++S L E + +I + + C
Sbjct: 984 IMSCVRASGHG-VGFVSDIRRMNVALTRARRALWVMGNASALMKSEDWAALISDARGRNC 1042
Query: 647 FIE 649
F+E
Sbjct: 1043 FME 1045
>dbj|BAA31600.1| (AB014525) KIAA0625 protein [Homo sapiens]
Length = 791
Score = 148 bits (369), Expect = 2e-34
Identities = 143/561 (25%), Positives = 255/561 (44%), Gaps = 115/561 (20%)
Query: 165 VPFDKSLNRSQRKAISKALGS-------EDFFLVHGPFGTGKTRTLV----ELIRQEVKR 213
+ + + N Q+KAI A L+HGP GTGK++T+V L+ + ++
Sbjct: 42 IAYLRDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRK 101
Query: 214 G------------NKVLATAESNVAVDNLVERL----------------SRSGIKIVRIG 245
G N+VL A SN AVD L++++ + I +VR+G
Sbjct: 102 GHSDENSNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLG 161
Query: 246 HPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGLSDEEI 305
K ++ L + + + +EL Q++ ++++ D ++
Sbjct: 162 P----EKSINSEVLKFSLDSQVNHRMKKELPSHVQAMHKRKE------------FLDYQL 205
Query: 306 IKLAERKRGARGLSARLIMEMAEWI-KLNRQVQKAFDDARKLEERIARD---IIREADVV 361
+L+ ++ RG E+ E I K++++ Q+ ++++ R + II E+ ++
Sbjct: 206 DELSRQRALCRGGREIQRQELDENISKVSKERQELASKIKEVQGRPQKTQSIIILESHII 265
Query: 362 LTTNSSAALEVVDYD-------TYDVAIIDEATQSTIPSILIPL-NKVERFVLAGDHKQL 413
T S++ +++ + I+DEA QS L PL ++ + +L GD KQL
Sbjct: 266 CCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQL 325
Query: 414 PPTILSLEAQE--------------LSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPS 459
PPT++S++AQE L + +I R P L VQYRM+ I FPS
Sbjct: 326 PPTVISMKAQEYGYDQSMMARFCRLLEENVEHNMISRLPILQ--LTVQYRMHPDICLFPS 383
Query: 460 KEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRG 519
Y + + I + W P + D +RR
Sbjct: 384 NYVYNRNLKTNRQTEAIRC---------SSDW-----PFQPYLVFDVGDGS-----ERRD 424
Query: 520 SESRENPLEAEIVAKIV----DKLLSIGVKPEWIGVITPYDDQRDLISMKVPED------ 569
++S N E ++V +I+ DK + + IG+IT Y Q+ +I + ++
Sbjct: 425 NDSYINVQEIKLVMEIIKLIKDKRKDVSFRN--IGIITHYKAQKTMIQKDLDKEFDRKGP 482
Query: 570 VEVKTVDGYQGREKEVIILSLVRSNKL-GEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTL 628
EV TVD +QGR+K+ +I++ VR+N + G IGFL L+RLNV++TRAK L ++G TL
Sbjct: 483 AEVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNVTITRAKYSLFILGHLRTL 542
Query: 629 SSHETYKKMIEFFKEKGCFIE 649
++ + ++I+ +++G I+
Sbjct: 543 MENQHWNQLIQDAQKRGAIIK 563
>gi|7662212 KIAA0625 protein [Homo sapiens] >gi|7022724|dbj|BAA91701.1|
(AK001456) unnamed protein product [Homo sapiens]
Length = 828
Score = 148 bits (369), Expect = 2e-34
Identities = 143/561 (25%), Positives = 255/561 (44%), Gaps = 115/561 (20%)
Query: 165 VPFDKSLNRSQRKAISKALGS-------EDFFLVHGPFGTGKTRTLV----ELIRQEVKR 213
+ + + N Q+KAI A L+HGP GTGK++T+V L+ + ++
Sbjct: 79 IAYLRDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRK 138
Query: 214 G------------NKVLATAESNVAVDNLVERL----------------SRSGIKIVRIG 245
G N+VL A SN AVD L++++ + I +VR+G
Sbjct: 139 GHSDENSNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLG 198
Query: 246 HPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGLSDEEI 305
K ++ L + + + +EL Q++ ++++ D ++
Sbjct: 199 P----EKSINSEVLKFSLDSQVNHRMKKELPSHVQAMHKRKE------------FLDYQL 242
Query: 306 IKLAERKRGARGLSARLIMEMAEWI-KLNRQVQKAFDDARKLEERIARD---IIREADVV 361
+L+ ++ RG E+ E I K++++ Q+ ++++ R + II E+ ++
Sbjct: 243 DELSRQRALCRGGREIQRQELDENISKVSKERQELASKIKEVQGRPQKTQSIIILESHII 302
Query: 362 LTTNSSAALEVVDYD-------TYDVAIIDEATQSTIPSILIPL-NKVERFVLAGDHKQL 413
T S++ +++ + I+DEA QS L PL ++ + +L GD KQL
Sbjct: 303 CCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQL 362
Query: 414 PPTILSLEAQE--------------LSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPS 459
PPT++S++AQE L + +I R P L VQYRM+ I FPS
Sbjct: 363 PPTVISMKAQEYGYDQSMMARFCRLLEENVEHNMISRLPILQ--LTVQYRMHPDICLFPS 420
Query: 460 KEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRG 519
Y + + I + W P + D +RR
Sbjct: 421 NYVYNRNLKTNRQTEAIRC---------SSDW-----PFQPYLVFDVGDGS-----ERRD 461
Query: 520 SESRENPLEAEIVAKIV----DKLLSIGVKPEWIGVITPYDDQRDLISMKVPED------ 569
++S N E ++V +I+ DK + + IG+IT Y Q+ +I + ++
Sbjct: 462 NDSYINVQEIKLVMEIIKLIKDKRKDVSFRN--IGIITHYKAQKTMIQKDLDKEFDRKGP 519
Query: 570 VEVKTVDGYQGREKEVIILSLVRSNKL-GEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTL 628
EV TVD +QGR+K+ +I++ VR+N + G IGFL L+RLNV++TRAK L ++G TL
Sbjct: 520 AEVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNVTITRAKYSLFILGHLRTL 579
Query: 629 SSHETYKKMIEFFKEKGCFIE 649
++ + ++I+ +++G I+
Sbjct: 580 MENQHWNQLIQDAQKRGAIIK 600
>gi|11429653 KIAA0625 protein [Homo sapiens]
Length = 916
Score = 148 bits (369), Expect = 2e-34
Identities = 143/561 (25%), Positives = 255/561 (44%), Gaps = 115/561 (20%)
Query: 165 VPFDKSLNRSQRKAISKALGS-------EDFFLVHGPFGTGKTRTLV----ELIRQEVKR 213
+ + + N Q+KAI A L+HGP GTGK++T+V L+ + ++
Sbjct: 167 IAYLRDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRK 226
Query: 214 G------------NKVLATAESNVAVDNLVERL----------------SRSGIKIVRIG 245
G N+VL A SN AVD L++++ + I +VR+G
Sbjct: 227 GHSDENSNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLG 286
Query: 246 HPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGLSDEEI 305
K ++ L + + + +EL Q++ ++++ D ++
Sbjct: 287 P----EKSINSEVLKFSLDSQVNHRMKKELPSHVQAMHKRKE------------FLDYQL 330
Query: 306 IKLAERKRGARGLSARLIMEMAEWI-KLNRQVQKAFDDARKLEERIARD---IIREADVV 361
+L+ ++ RG E+ E I K++++ Q+ ++++ R + II E+ ++
Sbjct: 331 DELSRQRALCRGGREIQRQELDENISKVSKERQELASKIKEVQGRPQKTQSIIILESHII 390
Query: 362 LTTNSSAALEVVDYD-------TYDVAIIDEATQSTIPSILIPL-NKVERFVLAGDHKQL 413
T S++ +++ + I+DEA QS L PL ++ + +L GD KQL
Sbjct: 391 CCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQL 450
Query: 414 PPTILSLEAQE--------------LSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPS 459
PPT++S++AQE L + +I R P L VQYRM+ I FPS
Sbjct: 451 PPTVISMKAQEYGYDQSMMARFCRLLEENVEHNMISRLPILQ--LTVQYRMHPDICLFPS 508
Query: 460 KEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRG 519
Y + + I + W P + D +RR
Sbjct: 509 NYVYNRNLKTNRQTEAIRC---------SSDW-----PFQPYLVFDVGDGS-----ERRD 549
Query: 520 SESRENPLEAEIVAKIV----DKLLSIGVKPEWIGVITPYDDQRDLISMKVPED------ 569
++S N E ++V +I+ DK + + IG+IT Y Q+ +I + ++
Sbjct: 550 NDSYINVQEIKLVMEIIKLIKDKRKDVSFRN--IGIITHYKAQKTMIQKDLDKEFDRKGP 607
Query: 570 VEVKTVDGYQGREKEVIILSLVRSNKL-GEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTL 628
EV TVD +QGR+K+ +I++ VR+N + G IGFL L+RLNV++TRAK L ++G TL
Sbjct: 608 AEVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNVTITRAKYSLFILGHLRTL 667
Query: 629 SSHETYKKMIEFFKEKGCFIE 649
++ + ++I+ +++G I+
Sbjct: 668 MENQHWNQLIQDAQKRGAIIK 688
>gb|AAG20303.1| (AE005104) DNA binding protein eukaryotic-like; Dbp [Halobacterium
sp. NRC-1]
Length = 751
Score = 147 bits (367), Expect = 4e-34
Identities = 105/309 (33%), Positives = 163/309 (51%), Gaps = 45/309 (14%)
Query: 344 RKLEERIARDIIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNKVER 403
R +++ + + ADVV T + AA D + +D+A++DEATQ++ + I +N +
Sbjct: 442 RVVDDHYRQRGVDAADVVAATTNGAA--TFDQNAFDLAVVDEATQASRAATAIAVNAADT 499
Query: 404 FVLAGDHKQLPP-TILSLEAQELSRTLFEGLIERYPWKSEMLVV-QYRMNERIMEFPSKE 461
VLAGDH+QLPP + A E+ +LFE LI+RY +L+ QYRM++ I FP++
Sbjct: 500 LVLAGDHRQLPPYGVREGGAGEMRPSLFETLIDRYGDDVAVLLARQYRMHDAIAGFPNEA 559
Query: 462 FYGGK-----IIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQ 516
FYGG+ + AD +V G+ + +D + E R
Sbjct: 560 FYGGRLETAAVAADRAVDGLP----------------------PVAVVDVAGQE---RRD 594
Query: 517 RRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISMKVPE------DV 570
RG+ R N EA +VA VD + GV+P +GVI Y D I + + +
Sbjct: 595 ERGASVR-NAAEASVVADRVDTIRRAGVEPGDLGVIAAYSDHVSAIRGVLADRGLDRPAL 653
Query: 571 EVKTVDGYQGREKEVIILSLVRSNKLGEIGFLK----DLRRLNVSLTRAKRKLIVVGDSS 626
V TVD +QG E++ +++S RSN + GFL+ RRLNV+LTRA+R L +VGD +
Sbjct: 654 TVDTVDSFQGGERDAVVVSFARSNDAHDAGFLEHPAAGPRRLNVALTRARRHLSLVGDWA 713
Query: 627 TLSSHETYK 635
TL+ +++
Sbjct: 714 TLTDPASHR 722
>gb|AAF23837.1|AC007234_9 (AC007234) F1E22.14 [Arabidopsis thaliana]
Length = 1076
Score = 142 bits (354), Expect = 1e-32
Identities = 110/352 (31%), Positives = 180/352 (50%), Gaps = 31/352 (8%)
Query: 314 GARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEERIARDIIREADVVLTTNSSAALEVV 373
G+ S++ + +++KL R + + F + + +++ +L + +S + +
Sbjct: 500 GSDRFSSQHVTVEDDYLKLLRSIPEIFPLPAVSDRHLIKELCLGHACLLFSTASCSARLY 559
Query: 374 DYDTYDVAIIDEATQ--STIPSILIPLNKVERFVLAGDHKQLPPTILSLEAQE--LSRTL 429
+ +IDEA Q SI + L + +L GD +QLP + S A E R+L
Sbjct: 560 TGTPIQLLVIDEAAQLKECESSIPMQLPGLRHLILVGDERQLPAMVESQIALEAGFGRSL 619
Query: 430 FEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPND 489
FE L K ML +QYRM+ I FP+KE YG KI+ +VR R+ + P +
Sbjct: 620 FERLA-LLGHKKYMLNIQYRMHCSISSFPNKELYGKKILDAPTVRQ---RNYTKQYLPGE 675
Query: 490 SWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEW- 548
+G P + I + A + E S +N +E +VA I+ LL + K +
Sbjct: 676 MYG----PYSFI-----NIAYGREEYGEGEGRSLKNNVEVVVVAAIIANLLQVSEKTKTR 726
Query: 549 --IGVITPYDDQRDLISMKVPE----------DVEVKTVDGYQGREKEVIILSLVRSNKL 596
+GVI+PY Q I K+ E + ++TVDG+QG E+++II+S VRSN +
Sbjct: 727 INVGVISPYKAQVIAIQEKIQETSIGDAGGLFSLRIRTVDGFQGGEEDIIIVSTVRSNGV 786
Query: 597 GEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTL-SSHETYKKMIEFFKEKGCF 647
G +GFL + RR NV LTRA+ L ++G+ +TL +S ++ +I+ KE+GCF
Sbjct: 787 GRVGFLGNRRRTNVLLTRARFCLWILGNEATLMNSKSVWRNLIQDAKERGCF 838
>gb|AAG09081.1|AC026237_2 (AC026237) Similar to tRNA-splicing endonuclease positive effector
SEN1 [Arabidopsis thaliana]
Length = 2142
Score = 138 bits (345), Expect = 1e-31
Identities = 138/513 (26%), Positives = 222/513 (42%), Gaps = 97/513 (18%)
Query: 216 KVLATAESNVAVDNLVERLSRSGIK----------IVRIGHPSRVSKHLHETTLAYLITQ 265
+VL A+SN AVD LV R+S GI +VR+G+ V + L L+ Q
Sbjct: 1306 RVLICAQSNAAVDELVSRISSLGIYGRDGKMFKPYLVRVGNAKTVHSNSMPFFLDTLVDQ 1365
Query: 266 HELYGELR------------------ELRVIGQSLA-----------EKRDTYTKPTPKF 296
+R L + + E D KP +
Sbjct: 1366 RLAEERMRINESKSNKGADSSALLRSNLEKVVDQITHFEAKRANINQESLDAKDKPENEH 1425
Query: 297 RRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEERIARDIIR 356
D +++ AE R L + + + Q +KA + R L++++ + I++
Sbjct: 1426 HNKDDDGKLMSDAELGIRLRRLYEQKRKIYKDLSAVQAQERKANYEMRTLKQKLRKSILK 1485
Query: 357 EADVVLTTNSSAALEVVDY----------------DTYDVAIIDEATQSTIPSILIPLNK 400
EA +V+TT S ++ + +D +IDEA Q+ P+ LIPL
Sbjct: 1486 EAQIVVTTLSGCGGDLYSVCAESLAAHKFGSPSEDNLFDAVVIDEAAQALEPATLIPLQL 1545
Query: 401 VE----RFVLAGDHKQLPPTILSLEAQEL--SRTLFEGLIERYPWKSEMLVVQYRMNERI 454
++ + ++ GD KQLP T+LS A + ++FE L +R + ML QYRM+ I
Sbjct: 1546 LKSRGTKCIMVGDPKQLPATVLSNVASKFLYECSMFERL-QRAGYPILMLTQQYRMHPEI 1604
Query: 455 MEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWE 514
FPS FY K++ G+ + N G VF D + E
Sbjct: 1605 CRFPSMHFYDNKLL-----NGVDMSSKSAPFHENHHLGPY-------VFYDIVDGQ---E 1649
Query: 515 RQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEW----IGVITPYDDQRDLISMK----- 565
+ S S N EAE +++ + E+ IG+ITPY Q ++ +
Sbjct: 1650 HRSGDSSSVCNEQEAEAAVQLL-RFFKKRYPSEFVAGRIGIITPYKRQLAVLRSRFTGAF 1708
Query: 566 ---VPEDVEVKTVDGYQGREKEVIILSLVRSN-------KLGEIGFLKDLRRLNVSLTRA 615
V D+E+ TVDG+QG+E ++++LS VR+ IGF+ D+RR+NV+LTRA
Sbjct: 1709 GAQVTADMEMNTVDGFQGKEVDILVLSTVRATHSAPDGVNQSRIGFVADVRRMNVALTRA 1768
Query: 616 KRKLIVVGDSSTLSSHETYKKMIEFFKEKGCFI 648
K L V+G++ TL + +++ KE+ I
Sbjct: 1769 KLSLWVLGNTRTLQRDHNWGALVKDAKEREVII 1801
>gb|AAF50482.1| (AE003556) CG7504 gene product [Drosophila melanogaster]
Length = 1417
Score = 137 bits (342), Expect = 3e-31
Identities = 136/485 (28%), Positives = 226/485 (46%), Gaps = 75/485 (15%)
Query: 190 LVHGPFGTGKTRTLVELIRQEVKRGN-------KVLATAESNVAVDNLVERL-------S 235
L+ GP GTGK+R + EL Q + GN K+L A SN AVD++V L +
Sbjct: 938 LIQGPPGTGKSRVISELCLQTLY-GNAAKTLDRKILICAHSNTAVDHIVGLLGSVLRVMN 996
Query: 236 RSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYTKPTPK 295
R ++R G ++S + + + + H + ++L+ + + AE K
Sbjct: 997 RDQFHLLRFGMHEKMSHY----SRPFSLEAHFNKAKEQKLQRVSKENAEI-------LKK 1045
Query: 296 FRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDD--ARKLEERIARD 353
L DE + + K S L+ ++ + K + + ++ E I+
Sbjct: 1046 QHNDLKDE----IQQLKEKTNLTSTYLLQQLQQKEKKLQLISNQLSPPLTQREEFEISHM 1101
Query: 354 IIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLN-KVERFVLAGDHKQ 412
+ A+++ TT SS D +D+ I+DEATQ T P L+P+ + VL GD +Q
Sbjct: 1102 CVTRANIICTTLSSCVKLANYVDFFDICIVDEATQCTEPWTLLPMRFGLTHMVLVGDMQQ 1161
Query: 413 LPPTILSLEAQE--LSRTLFE-------------GLIERYPWKSEMLVVQYRMNERIMEF 457
LP +LS +A + LS ++F+ G K L QYRM+ I +
Sbjct: 1162 LPAVVLSKKAIDFGLSNSMFDRIQRSLQTQLDKPGSYHLMHTKLFKLSTQYRMHPEICRW 1221
Query: 458 PSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQR 517
P++ FY ++I E + SP + I N+ D++ A+NK
Sbjct: 1222 PNQYFYEDQLINAECT--------ARFASPLIPYCVI----NLKYTCDSNGAQNK----- 1264
Query: 518 RGSESRENPLEAEIVAKIVDKL-LSIGVKPEWIGVITPYDDQRDLISMKVPEDVEV--KT 574
S N EA VAK++ ++ + K G+I+PY +Q +S +P + + +T
Sbjct: 1265 ----SISNNEEARFVAKLLTEMDKHMPSKRFSYGLISPYQNQCYALSQVIPSHMNITPQT 1320
Query: 575 VDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETY 634
VD YQG EK+VII+S R+ GFL + +RLNV+LTR +R L++ G+ L S E +
Sbjct: 1321 VDSYQGLEKDVIIISNARTR---GCGFLTNYQRLNVALTRPRRCLVICGNFEDLKSVEMW 1377
Query: 635 KKMIE 639
+ +++
Sbjct: 1378 RNLLD 1382
>pir||T28788 hypothetical protein C41D11.7 - Caenorhabditis elegans
>gi|2105497|gb|AAC48142.1| (AF003740) similar to
mammalian DNA-binding proteins SMUBP-2 [Caenorhabditis
elegans]
Length = 633
Score = 136 bits (338), Expect = 1e-30
Identities = 156/594 (26%), Positives = 259/594 (43%), Gaps = 110/594 (18%)
Query: 95 VVEKGKRFIVVALETVPEWALRDVRIDLYANDITFRRWLENLN----TIKKAGKRALRFY 150
++E K+F LE V +W + V ++ N ++ N T++ + +
Sbjct: 1 MIEADKKF----LELVKKWGVLSVGLNQKQNTNPVYQYTLEDNPESLTLQDVLESHMTDP 56
Query: 151 LGLDEPSQGEEVNFVPFDKSLNRSQRKAISKALG-SEDFFLVHGPFGTGKTRTLVELIRQ 209
+ L+ E+ +PF N QR AI AL + + GP GTGKT TL L+ +
Sbjct: 57 IELNSFDSMEKEAGIPFS---NEKQRTAIKMALNENRKLVCIQGPPGTGKTFTLTLLLCR 113
Query: 210 EVKRGNKVLATAESNVAVDNL----VERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQ 265
+++ +V+ A + A+ N+ + L R GIK+ HE L
Sbjct: 114 LIQQKKQVVVLAPTREALANIRMMTKKTLKRMGIKV-------------HEHAL------ 154
Query: 266 HELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGLSDEEIIKLAERKRGARG-LSARLIM 324
E RD K R ++ EE+ L RK G ++ ++
Sbjct: 155 --------------MDTNEYRDVINKSD---RALMAAEEVRDL--RKAFDNGEITENVLD 195
Query: 325 EMAEWIKLNRQVQKAFDDARKLEERIARDIIREADVVLTTNSSAALE-VVDYDTYD--VA 381
EM + I +NR + + ++I V T ++ ++ V+ + +D +
Sbjct: 196 EMRQSI-INR-----------VRNEVGAEVIGNVRVAFATIGASFVDFVMKHKKFDPCLC 243
Query: 382 IIDEATQSTIPSILIPLNKVERFVLAGDHKQLPPTILSLEAQE--LSRTLFEGLIER--- 436
IIDEA Q + K++R V+AGD KQLP + + EA+ L ++ + ++E+
Sbjct: 244 IIDEAAQVMEAQTWPAVYKMKRIVMAGDPKQLPALVFTDEAKAFGLQNSVMDRILEKKNN 303
Query: 437 YPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILN 496
+ W ML QYR N +I + + FY ++ D +L ++ Q K N
Sbjct: 304 FSWI--MLENQYRSNAKIATWSNTCFYHNQLKTDVKCHEYSLHTILNPQPK-----KFRN 356
Query: 497 PENVIVFIDTSKAENKWER---------------QRRGSESRENPLEAEIVAKIVDKLLS 541
+ +V IDTS + +R + + S N EA+I +LL
Sbjct: 357 LFDPLVLIDTSLERDVEKRLETYEHAVFDTNSINKTKQGFSYANLAEAKIAIGHYQRLLK 416
Query: 542 IGVKPEWIGVITPYDDQRDLISMKVPE-----------DVEVKTVDGYQGREKEVIILSL 590
GV+P I +ITPY Q L++ + E + TVD QG+E EV+I ++
Sbjct: 417 YGVQPSDIAIITPYKGQTSLVTKLMEEFGAETGYTDFVQTTIGTVDSVQGKEYEVVIFTM 476
Query: 591 VRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTL--SSHETYKKMIEFFK 642
VRSN +GF+ +LRRLNV +TRAKR + +G+ L S + +K+ + FK
Sbjct: 477 VRSNPRKTMGFVSELRRLNVVITRAKRHFMFIGNGYLLAESKKDEIRKLYDCFK 530
>dbj|BAB11057.1| (AB015478) contains similarity to nonsense-mediated mRNA decay
trans-acting factor~gene_id:MSG15.19 [Arabidopsis
thaliana]
Length = 676
Score = 135 bits (337), Expect = 1e-30
Identities = 102/340 (30%), Positives = 177/340 (52%), Gaps = 39/340 (11%)
Query: 330 IKLNRQVQKAFDDARKLE-ERIARDIIREADVVLTTNSSAA-LEVVDYDTYDVAIIDEAT 387
+K R + K F+ LE E I + ++ AD++L T S AA + V ++ ++DEA
Sbjct: 314 LKALRLLPKRFEIPDMLENEDIRKFCLQNADIILCTASGAAEMNVERTGNVELLVVDEAA 373
Query: 388 Q----STIPSILIPLNKVERFVLAGDHKQLPPTILS--LEAQELSRTLFEGLIERYPWKS 441
Q ++ ++ +P + +L GD QLP + + E + R+LFE L+
Sbjct: 374 QLKECESVAALQLP--GLRHAILIGDEFQLPAMVHNEMCEKAKFGRSLFERLV-LLGHNK 430
Query: 442 EMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVI 501
+L VQYRM+ I FP+KEFYGG+I E+V+ + + DS+
Sbjct: 431 HLLDVQYRMHPSISRFPNKEFYGGRIKDAENVKESIYQKRFLKGNMFDSFS--------- 481
Query: 502 VFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEW---IGVITPYDDQ 558
FI+ + + ++ S +N +E ++++I+ L + + +GV++PY Q
Sbjct: 482 -FINVGRGKEEFG----DGHSPKNMVEVAVISEIISNLYKVSCERRMKVSVGVVSPYKGQ 536
Query: 559 RDLISMKVPED----------VEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRL 608
I K+ + + V++VDG+QG E+++II+S VRSN G++GFL + +R
Sbjct: 537 MRAIQEKIGDKYSSLSGQQFTLNVRSVDGFQGGEEDIIIISTVRSNGNGKVGFLNNRQRA 596
Query: 609 NVSLTRAKRKLIVVGDSSTLS-SHETYKKMIEFFKEKGCF 647
NV+LTRA+ L V+G+ +TL+ S + +I + +GCF
Sbjct: 597 NVALTRARHCLWVIGNETTLALSGSIWATLISESRTRGCF 636
>gb|AAF57908.1| (AE003804) CG6967 gene product [Drosophila melanogaster]
Length = 765
Score = 134 bits (335), Expect = 2e-30
Identities = 139/509 (27%), Positives = 231/509 (45%), Gaps = 103/509 (20%)
Query: 172 NRSQRKAISKALG---SEDFFLVHGPFGTGKTRTLVELIRQE--VKRGNKVLATAESNVA 226
N Q +A+ + + ++ +++ GP GTGKT T+VE I Q + +++L TA SN A
Sbjct: 252 NAEQLEAVQRIVAGPSTQGPYILFGPPGTGKTTTIVEAILQLRLQQPQSRILVTAGSNSA 311
Query: 227 VDNLVERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKR 286
D + +L I R+ +H + L H+L +RV +S+ EK
Sbjct: 312 CDTIALKLCEY------IESNIRLQEHFAQQKLPE--PDHQL------IRVYSRSIYEK- 356
Query: 287 DTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKL 346
G + + L+ K + ++ +
Sbjct: 357 ---------------------------GFASVPSLLL--------------KNSNCSKSI 375
Query: 347 EERIARDIIREADVVLTTNSSAALEVVD----YDTYDVAIIDEATQSTIPSILIPLNKVE 402
+ I I + +++ T + A V D Y+ + IDEA ST P LI + ++
Sbjct: 376 YDHIKASRIVKYGIIVATLCTVARLVTDTLGRYNFFTHIFIDEAGASTEPEALIGIMGIK 435
Query: 403 R-----FVLAGDHKQLPPTILSLEAQEL--SRTLFEGLIERYPWKSE-----------ML 444
+ +L+GDHKQL I S A L SR+L E L++ +KS+ L
Sbjct: 436 QTADCHVILSGDHKQLGAVIKSNRAASLGLSRSLMERLLQSDCYKSDENGNYDRNRQMRL 495
Query: 445 VVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFI 504
YR + +I+ ++ +Y G++ A + L +W + NP+ I+F
Sbjct: 496 CRNYRSHPQIVRLFNELYYNGELKAQAPAMDVNLAA---------NWSVLTNPQFPIIFQ 546
Query: 505 DTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVK-PEWIGVITPYDDQRDLIS 563
T N+ + S S N LEAE++ V +L++ V E +G++ PY Q L++
Sbjct: 547 ATHGVTNR----EQNSTSSYNNLEAEVICWYVKRLINDRVVGQEDVGIVAPYTAQGKLVT 602
Query: 564 MKVPE----DVEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKL 619
+ +VEV +V+ YQGREK +II SLV+S +GF+ + RR+NV L+RAK L
Sbjct: 603 KLLQSKGYPNVEVGSVETYQGREKTIIIASLVKS--FTNMGFMCNPRRVNVLLSRAKALL 660
Query: 620 IVVGDSSTLSSHETYKKMIEFFKEKGCFI 648
I+VG+ TL H +K +I K+ G ++
Sbjct: 661 ILVGNPVTLRHHSDFKFVINECKKHGTYL 689
>gi|6321958 DNA replication helicase; Dna2p [Saccharomyces cerevisiae]
>gi|731738|sp|P38859|DNA2_YEAST DNA REPLICATION HELICASE
DNA2 >gi|626832|pir||S48904 probable purine
nucleotide-binding protein YHR164c - yeast
(Saccharomyces cerevisiae) >gi|458906|gb|AAB68010.1|
(U00027) Dna2p: DNA replication helicase [Saccharomyces
cerevisiae]
Length = 1522
Score = 134 bits (334), Expect = 3e-30
Identities = 99/309 (32%), Positives = 163/309 (52%), Gaps = 21/309 (6%)
Query: 355 IREADVVLTT--NSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNKVERFVLAGDHKQ 412
I VV TT + L ++ +D I+DEA+Q ++P L PL RF++ GDH Q
Sbjct: 1155 INSTSVVATTCLGINDILFTLNEKDFDYVILDEASQISMPVALGPLRYGNRFIMVGDHYQ 1214
Query: 413 LPPTILSLEAQ--ELSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKI--- 467
LPP + + A+ L +LF+ E++P L +QYRM I+ + Y K+
Sbjct: 1215 LPPLVKNDAARLGGLEESLFKTFCEKHPESVAELTLQYRMCGDIVTLSNFLIYDNKLKCG 1274
Query: 468 ---IADESVRGITLRDLVEYQSPNDS---WGK-ILNPENVIVFIDTSKAENKWERQRRGS 520
+ +S+ L Y++ + + W + IL P +VF++ + E+ +
Sbjct: 1275 NNEVFAQSLELPMPEALSRYRNESANSKQWLEDILEPTRKVVFLNYDNCPDIIEQSEK-- 1332
Query: 521 ESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQ----RDLISMKVPEDVEVKTVD 576
++ N EAE+ + V+ +L GV E IGV+T Y Q + + + V + +E+ T D
Sbjct: 1333 DNITNHGEAELTLQCVEGMLLSGVPCEDIGVMTLYRAQLRLLKKIFNKNVYDGLEILTAD 1392
Query: 577 GYQGREKEVIILSLVRSN-KLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYK 635
+QGR+K+ II+S+VR N +L LK+LRR+NV++TRAK KLI++G ST+ S K
Sbjct: 1393 QFQGRDKKCIIISMVRRNSQLNGGALLKELRRVNVAMTRAKSKLIIIGSKSTIGSVPEIK 1452
Query: 636 KMIEFFKEK 644
+ +E+
Sbjct: 1453 SFVNLLEER 1461
>dbj|BAB11372.1| (AB017068) contains similarity to nonsense-mediated mRNA decay
trans-acting factors~gene_id:MJG14.22 [Arabidopsis
thaliana]
Length = 880
Score = 131 bits (327), Expect = 2e-29
Identities = 102/351 (29%), Positives = 177/351 (50%), Gaps = 48/351 (13%)
Query: 330 IKLNRQVQKAFDDARKLE-ERIARDIIREADVVLTTNSSAA-LEVVDYDTYDVAIIDEAT 387
+K R + K F+ LE E I + ++ AD++L T S AA + V ++ ++DEA
Sbjct: 509 LKALRLLPKRFEIPDMLENEDIRKFCLQNADIILCTASGAAEMNVERTGNVELLVVDEAA 568
Query: 388 Q----STIPSILIPLNKVERFVLAGDHKQLPPTILS-----------LEAQELSRTLFEG 432
Q ++ ++ +P + +L GD QLP + + E + R+LFE
Sbjct: 569 QLKECESVAALQLP--GLRHAILIGDEFQLPAMVHNEYCNMGIMWQMCEKAKFGRSLFER 626
Query: 433 LIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWG 492
L+ +L VQYRM+ I FP+KEFYGG+I E+V+ + + S+
Sbjct: 627 LV-LLGHNKHLLDVQYRMHPSISRFPNKEFYGGRIKDAENVKESIYQKRFLQGNMFGSFS 685
Query: 493 KILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEW---I 549
FI+ + + ++ S +N +E +V++I+ L + + +
Sbjct: 686 ----------FINVGRGKEEFG----DGHSPKNMVEVAVVSEIISNLFKVSCERRMKVSV 731
Query: 550 GVITPYDDQRDLISMKVPED----------VEVKTVDGYQGREKEVIILSLVRSNKLGEI 599
GV++PY Q I K+ + + V++VDG+QG E+++II+S VRSN G++
Sbjct: 732 GVVSPYKGQMRAIQEKIGDKYSSLSGQQFTLNVRSVDGFQGGEEDIIIISTVRSNSNGKV 791
Query: 600 GFLKDLRRLNVSLTRAKRKLIVVGDSSTLS-SHETYKKMIEFFKEKGCFIE 649
GFL + +R NV+LTRA+ L V+G+ +TL+ S + +I + +GCF +
Sbjct: 792 GFLNNRQRANVALTRARHCLWVIGNETTLALSGSIWATLISESRTRGCFYD 842
>gb|AAB67523.1| (U21094) Sen1p [Saccharomyces cerevisiae]
Length = 757
Score = 131 bits (326), Expect = 3e-29
Identities = 112/366 (30%), Positives = 182/366 (49%), Gaps = 39/366 (10%)
Query: 300 LSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEERIAR-DIIREA 358
+S E+I KL + R +++I E+ R+ R L+ R A+ I+ +
Sbjct: 33 MSTEDISKLQLKIREL----SKIINELGRDRDEMREKNSVNYRNRDLDRRNAQAHILAVS 88
Query: 359 DVVLTTNSSAALEVVDYD--TYDVAIIDEATQSTIPSILIPLNKV-ERFVLAGDHKQLPP 415
D++ +T S +A +V+ +D IIDEA Q T S +IPL +R ++ GD QLPP
Sbjct: 89 DIICSTLSGSAHDVLATMGIKFDTVIIDEACQCTELSSIIPLRYGGKRCIMVGDPNQLPP 148
Query: 416 TILSLEAQELSRTLFEGLIERYPWKSE--MLVVQYRMNERIMEFPSKEFYGGKIIADESV 473
T+LS A + L R S +L VQYRM+ I +FPS EFY G++ +
Sbjct: 149 TVLSGAASNFKYN--QSLFVRMEKNSSPYLLDVQYRMHPSISKFPSSEFYQGRLKDGPGM 206
Query: 474 RGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVA 533
+ R W + L P F D + Q + S N E +
Sbjct: 207 DILNKRP----------WHQ-LEPLAPYKFFDIISGR---QEQNAKTMSYTNMEEIRVAI 252
Query: 534 KIVDKLL-SIGVKPEW---IGVITPYDDQRDLISMK--------VPEDVEVKTVDGYQGR 581
++VD L K ++ IG+I+PY +Q + + + + ++ T+DG+QG+
Sbjct: 253 ELVDYLFRKFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQGQ 312
Query: 582 EKEVIILSLVRSNKL-GEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEF 640
EKE+I++S VR++ +GFLKD RR+NV+LTRAK + V+G +L+ + ++ +IE
Sbjct: 313 EKEIILISCVRADDTKSSVGFLKDFRRMNVALTRAKTSIWVLGHQRSLAKSKLWRDLIED 372
Query: 641 FKEKGC 646
K++ C
Sbjct: 373 AKDRSC 378
>pir||T22132 hypothetical protein F43G6.1a - Caenorhabditis elegans
>gi|3877086|emb|CAA90399.1| (Z50070) similar to DNA
binding protein~cDNA EST EMBL:Z14942 comes from this
gene~cDNA EST yk46a12.3 comes from this gene~cDNA EST
yk27h9.5 comes from this gene~cDNA EST yk46a12.5 comes
from this gene~cDNA EST yk130a10.5 comes from this
gene~cDNA EST y>
Length = 1105
Score = 131 bits (326), Expect = 3e-29
Identities = 100/285 (35%), Positives = 154/285 (53%), Gaps = 13/285 (4%)
Query: 352 RDIIREADVVLTTNSSAALEVV-DYDTYDVAIIDEATQSTIPSILIPLNKVERFVLAGDH 410
R +++ +V T E++ Y +DV I+DEA+ P +L L +FVL GD
Sbjct: 793 RKVMKTTPIVACTCHHVPRELLFSYRHFDVVIVDEASMVLEPLLLPVLATSNKFVLVGDC 852
Query: 411 KQLPPTILSLEAQE--LSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKII 468
KQL P ++S +A++ + E L + +P L QYRMN I SK FY ++I
Sbjct: 853 KQLTPLVVSRKAKQEGAGISTMEKLQQSHPGVVVSLTSQYRMNREISVLSSKLFYENRLI 912
Query: 469 -ADESVRGITLRDLVEY----QSPNDSWGKILNPE--NVIVFIDT-SKAENKWERQRRGS 520
+ESV +L +Y +D K L+ + + VF+DT S +K + +
Sbjct: 913 CGNESVSRSSLDRTGDYIVAMDDGSDHIRKALSGDIKDSCVFLDTQSTINSKMQCEDGEG 972
Query: 521 ESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLI-SMKVPEDVEVKTVDGYQ 579
N EA++++++ + + GVKP IGV++ Y Q D I + +++EV T+D YQ
Sbjct: 973 GGMCNDGEAKLISELCQQFVMSGVKPHEIGVMSAYRRQVDHIRGILNSDELEVNTIDSYQ 1032
Query: 580 GREKEVIILSLV-RSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVG 623
GREK VII SL +N + LKD RR+NV+LTRA++KL+VVG
Sbjct: 1033 GREKRVIIWSLTWTNNSTKKSELLKDERRVNVALTRARQKLVVVG 1077
>pir||T22138 hypothetical protein F43G6.1b - Caenorhabditis elegans
>gi|5824500|emb|CAB54253.1| (Z50070) cDNA EST yk592a5.5
comes from this gene~cDNA EST yk653b11.5 comes from this
gene [Caenorhabditis elegans]
Length = 1069
Score = 131 bits (326), Expect = 3e-29
Identities = 100/285 (35%), Positives = 154/285 (53%), Gaps = 13/285 (4%)
Query: 352 RDIIREADVVLTTNSSAALEVV-DYDTYDVAIIDEATQSTIPSILIPLNKVERFVLAGDH 410
R +++ +V T E++ Y +DV I+DEA+ P +L L +FVL GD
Sbjct: 757 RKVMKTTPIVACTCHHVPRELLFSYRHFDVVIVDEASMVLEPLLLPVLATSNKFVLVGDC 816
Query: 411 KQLPPTILSLEAQE--LSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKII 468
KQL P ++S +A++ + E L + +P L QYRMN I SK FY ++I
Sbjct: 817 KQLTPLVVSRKAKQEGAGISTMEKLQQSHPGVVVSLTSQYRMNREISVLSSKLFYENRLI 876
Query: 469 -ADESVRGITLRDLVEY----QSPNDSWGKILNPE--NVIVFIDT-SKAENKWERQRRGS 520
+ESV +L +Y +D K L+ + + VF+DT S +K + +
Sbjct: 877 CGNESVSRSSLDRTGDYIVAMDDGSDHIRKALSGDIKDSCVFLDTQSTINSKMQCEDGEG 936
Query: 521 ESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLI-SMKVPEDVEVKTVDGYQ 579
N EA++++++ + + GVKP IGV++ Y Q D I + +++EV T+D YQ
Sbjct: 937 GGMCNDGEAKLISELCQQFVMSGVKPHEIGVMSAYRRQVDHIRGILNSDELEVNTIDSYQ 996
Query: 580 GREKEVIILSLV-RSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVG 623
GREK VII SL +N + LKD RR+NV+LTRA++KL+VVG
Sbjct: 997 GREKRVIIWSLTWTNNSTKKSELLKDERRVNVALTRARQKLVVVG 1041
>gi|11499542 DNA helicase, putative [Archaeoglobus fulgidus]
>gi|7483284|pir||G69494 DNA helicase homolog -
Archaeoglobus fulgidus >gi|2648582|gb|AAB89295.1|
(AE000968) DNA helicase, putative [Archaeoglobus
fulgidus]
Length = 453
Score = 130 bits (324), Expect = 4e-29
Identities = 109/306 (35%), Positives = 156/306 (50%), Gaps = 30/306 (9%)
Query: 349 RIARDIIREADVVLTTN----SSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNKVERF 404
RI D+IR+ +V+ + +AL+ D+DT IIDEA+ + I + L+ L K E+
Sbjct: 164 RIQNDMIRKGKIVVGSTILKGMMSALKNYDFDT---VIIDEASNTCISTALLALEKAEKA 220
Query: 405 VLAGDHKQLPPTILSLEAQELSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYG 464
V+ GD QLPP + + + LI Y K+ L YR N +I EF ++ YG
Sbjct: 221 VVVGDPYQLPPVYEVGGHKAAKFSAYNFLINIY-GKNLWLRRHYRSNAKIAEFAARHVYG 279
Query: 465 GKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRE 524
I DE R I + + + ++ +PE +VFID + E RR S+
Sbjct: 280 FLEI-DEKCRRIKI------EPCKTTIPEVGDPEKPLVFIDCNGVE------RREGRSKV 326
Query: 525 NPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISMKVPE---DVEVKTVDGYQGR 581
N EAE+VA I ++L V E +GVITPY Q +LI + E VEV TV YQGR
Sbjct: 327 NEEEAEVVAMIAEELAEC-VGEENVGVITPYVKQAELIRGILSEFGVMVEVSTVHSYQGR 385
Query: 582 EKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETY--KKMIE 639
EK+V+I S+ + G F + R NV+LTRA++K I VG+S L + M+
Sbjct: 386 EKDVVIYSITAT---GNPYFASEKRLFNVALTRARKKFIAVGNSKALEGKNLLLTRFMVA 442
Query: 640 FFKEKG 645
KE G
Sbjct: 443 AIKEGG 448
>dbj|BAB11370.1| (AB017068) contains similarity to nonsense-mediated mRNA decay
trans-acting factors~gene_id:MJG14.20 [Arabidopsis
thaliana]
Length = 701
Score = 127 bits (316), Expect = 4e-28
Identities = 98/339 (28%), Positives = 174/339 (50%), Gaps = 34/339 (10%)
Query: 330 IKLNRQVQKAFDDARKLEERIARDI-IREADVVLTTNSSAA-LEVVDYDTYDVAIIDEAT 387
+++ R + + F+ + LE + ++ AD++ T S AA + + + D+ ++DEA
Sbjct: 340 LQILRLLPERFEVSDMLENNDTKTFCLQNADIIFCTASGAADMNPIRTGSVDLLVVDEAA 399
Query: 388 Q-STIPSIL-IPLNKVERFVLAGDHKQLPPTILS--LEAQELSRTLFEGLIERYPWKSEM 443
Q S+ + L+ + VL GD QLP + + E + R+LFE L+ +
Sbjct: 400 QLKECESVAALQLSGLRHAVLIGDELQLPAMVHNEICEKAKFGRSLFERLV-LLGHNKHL 458
Query: 444 LVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVF 503
L VQYRM+ I FP+KEFYGG+I +V+ + + S+ F
Sbjct: 459 LNVQYRMHPSISRFPNKEFYGGRIKDAANVQESIYQKRFLQGNMFGSFS----------F 508
Query: 504 IDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEW---IGVITPYDDQRD 560
I+ + E ++ S +N +E ++++I+ L + + +GV++PY Q
Sbjct: 509 INVGRGEEEFG----DGHSPKNMVEVAVISEIISNLFKVSSERRIKMSVGVVSPYKGQVR 564
Query: 561 LISMKVPED---------VEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVS 611
I + + V++VDG+QG E+++II+S VRSN G++GFL + +R NV+
Sbjct: 565 AIQERTTNKYSSLSGLFTLNVRSVDGFQGGEEDIIIISTVRSNGNGKVGFLNNRQRANVA 624
Query: 612 LTRAKRKLIVVGDSSTLS-SHETYKKMIEFFKEKGCFIE 649
LTRA+ L V+G+ +TL+ S ++ K+I + GCF +
Sbjct: 625 LTRARHCLWVIGNETTLALSGSSWAKLISESRTLGCFYD 663
>pir||T00740 hypothetical protein F22O13.35 - Arabidopsis thaliana
Length = 814
Score = 125 bits (312), Expect = 1e-27
Identities = 90/258 (34%), Positives = 127/258 (48%), Gaps = 49/258 (18%)
Query: 378 YDVAIIDEATQSTIPSILIPLNKVERFVLAGDHKQLPPTILSLEAQE--LSRTLFEGLIE 435
+DV IIDEA Q +P + PL FVL GDH QLPP + S EA+E + +LF L E
Sbjct: 550 FDVCIIDEAGQIALPVSIGPLLFASTFVLVGDHYQLPPLVQSTEARENGMGISLFRRLSE 609
Query: 436 RYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKIL 495
+P +L QYRM IME + YG ++ +
Sbjct: 610 AHPQAISVLQNQYRMCRGIMELSNALIYGDRLCCGSA----------------------- 646
Query: 496 NPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPY 555
+ + + TS + + W + KIV++L++ GV + IG+ITPY
Sbjct: 647 EVADATLVLSTSSSTSPW------------------LKKIVEELVNNGVDSKDIGIITPY 688
Query: 556 DDQRDLISMKVP-EDVEVKTVDGYQGREKEVIILSLVRSN---KLGEIGFLKDLRRLNVS 611
+ Q LI +P VE+ T+D YQGR+K+ I++S VRS + L D R+NV+
Sbjct: 689 NSQASLIQHAIPTTPVEIHTIDKYQGRDKDCILVSFVRSREKPRSSASSLLGDWHRINVA 748
Query: 612 LTRAKRKLIVVGDSSTLS 629
LTRA KLI+VG TLS
Sbjct: 749 LTRA--KLIMVGSQRTLS 764
Score = 77.6 bits (188), Expect = 4e-13
Identities = 41/127 (32%), Positives = 77/127 (60%), Gaps = 2/127 (1%)
Query: 157 SQGEEVNFVPFDKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNK 216
SQ ++++ +KSLN QR+AI K L ++D+ L+ G GTGKT T+V ++ + RG+
Sbjct: 410 SQDPAISYIWSEKSLNNDQRQAILKILTAKDYALILGMPGTGKTSTMVHAVKALLIRGSS 469
Query: 217 VLATAESNVAVDNLVERLSRSGIKIVRIGHPSRVSKHLHETTLA--YLITQHELYGELRE 274
+L + +N AVDNL+ +L GI+ +RIG V + + E+ + + + ++ +L +
Sbjct: 470 ILLASYTNSAVDNLLIKLKAQGIEFLRIGRDEAVHEEVRESCFSAMNMCSVEDIKKKLDQ 529
Query: 275 LRVIGQS 281
++V+ +
Sbjct: 530 VKVVAST 536
>dbj|BAB08973.1| (AB024026) gb|AAD48967.1~gene_id:K15O15.6~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 536
Score = 122 bits (304), Expect = 1e-26
Identities = 94/305 (30%), Positives = 158/305 (50%), Gaps = 39/305 (12%)
Query: 367 SAALEVVDYDT--YDVAIIDEATQ----STIPSILIPLNKVERFVLAGDHKQLPPTILS- 419
S A E+ + T +V ++DEA Q ++ ++ +P + +L GD QLP + +
Sbjct: 233 SGAAEINEERTGNIEVLVVDEAAQLKECESVAALQLP--GLRHAILIGDEFQLPAMVHND 290
Query: 420 -LEAQELSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITL 478
E + R+LFE L+ K +L VQYRM+ I FP KEFYGG+I +V+
Sbjct: 291 QCEKAKFGRSLFERLV-LLGHKKHLLDVQYRMHPSISRFPYKEFYGGRIKDAANVQESIY 349
Query: 479 RDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDK 538
+ + S+ FI+ + + ++ +S +N +E +V++I+
Sbjct: 350 QKRFLQGNMFGSFS----------FINVGRGKEEFG----DGDSPKNMVEVAVVSEIISN 395
Query: 539 LLSIGVKPEW---IGVITPYDDQRDLISMKVPED----------VEVKTVDGYQGREKEV 585
L + + + +GVITPY Q I ++ + V V++VDG+QG E+++
Sbjct: 396 LFKVSRERKMKMSVGVITPYKGQVRAIQERIRDKYSSLSGELFTVNVRSVDGFQGGEEDI 455
Query: 586 IILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLS-SHETYKKMIEFFKEK 644
II+S VRSN G++GFL + +R NV+LTRA+ L V+G+ STL+ S + +I K +
Sbjct: 456 IIISTVRSNSNGKVGFLSNRQRANVALTRARHCLWVIGNESTLARSGSIWANLISDSKRR 515
Query: 645 GCFIE 649
CF +
Sbjct: 516 KCFYD 520
>dbj|BAB11373.1| (AB017068) contains similarity to DNA helicase~gene_id:MJG14.23
[Arabidopsis thaliana]
Length = 834
Score = 122 bits (303), Expect = 1e-26
Identities = 95/324 (29%), Positives = 164/324 (50%), Gaps = 39/324 (12%)
Query: 348 ERIARDIIREADVVLTTNSSAA-LEVVDYDTYDVAIIDEATQ----STIPSILIPLNKVE 402
E I + ++ AD++ T SS A + + D+ ++DE Q ++ ++ +P +
Sbjct: 492 EDIRKFCLQNADIIFCTASSVANINPARIGSVDLLVVDETAQLKECESVAALQLP--GLC 549
Query: 403 RFVLAGDHKQLPPTILSLEAQE--LSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSK 460
+L GD QLP + + E + R+LFE L+ +L VQYRM+ I FP+K
Sbjct: 550 HALLIGDEYQLPAMVHNEECDKAKFGRSLFERLV-LIGHSKHLLNVQYRMHPSISRFPNK 608
Query: 461 EFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGS 520
EFYGG+I +V+ +S + N FI+ + + ++
Sbjct: 609 EFYGGRITDAANVQ----------ESIYEKRFLQGNMFGTFSFINVGRGKEEFG----DG 654
Query: 521 ESRENPLEAEIVAKIVDKLLSIGVKPEW---IGVITPYDDQRDLISMKVPED-------- 569
S +N +E +++KI+ L + + + +GVI+PY Q I +V +
Sbjct: 655 HSPKNMVEVAVISKIISNLFKVSSQRKQKMSVGVISPYKGQVRAIQERVGDKYNSLSVDQ 714
Query: 570 ---VEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSS 626
+ V++VDG+QG E +VII+S VR N G +GFL + +R NV+LTRA+ L V+G+ +
Sbjct: 715 LFTLNVQSVDGFQGGEVDVIIISTVRCNVNGNVGFLSNRQRANVALTRARHCLWVIGNGT 774
Query: 627 TLS-SHETYKKMIEFFKEKGCFIE 649
TL+ S + ++I + +GCF +
Sbjct: 775 TLALSGSIWAELISESRTRGCFYD 798
>gb|AAD48967.1|AF147263_9 (AF147263) contains similarity to nonsense-mediated mRNA decay
trans-acting factors [Arabidopsis thaliana]
>gi|7267314|emb|CAB81096.1| (AL161503) contains
similarity to nonsense-mediated mRNA decay trans-acting
factors~similarity to~Contains Prokaryotic membrane
lipoprotein lipid attachment site AA120-130 [Arabidopsis
thaliana]
Length = 660
Score = 122 bits (302), Expect = 2e-26
Identities = 101/315 (32%), Positives = 160/315 (50%), Gaps = 34/315 (10%)
Query: 334 RQVQKAFD-DARKLEERIARDIIREADVVLTTNSSAALEVVDY-DTYDVAIIDEATQ-ST 390
R + K F+ A ++E I ++ A ++ T S AA + + D+ ++DEA Q
Sbjct: 356 RLLSKRFEIPALLMKEDIRTFCLQNAHIIFCTASGAAEMTAERAGSIDMLVVDEAAQLKE 415
Query: 391 IPSIL-IPLNKVERFVLAGDHKQLPPTILS--LEAQELSRTLFEGLIERYPWKSEMLVVQ 447
S+ + L + VL GD QLP + S E + R+LFE L + K +L VQ
Sbjct: 416 CESVAALQLQGLHHAVLIGDELQLPAMVQSEVCEKAKFVRSLFERL-DSLGHKKHLLNVQ 474
Query: 448 YRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTS 507
YRM+ I FP+ EFYGGKI E V+ T + + S+ FI+
Sbjct: 475 YRMHPSISLFPNMEFYGGKISDAEIVKESTYQKRFLQGNMFGSFS----------FINVG 524
Query: 508 KAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEW---IGVITPYDDQRDLISM 564
+ ++ S +N +E +V++I+ LL + + + +GVI+PY Q I
Sbjct: 525 LGKEEFG----DGHSPKNMVEIAVVSEILTNLLKVSSETKTKMSVGVISPYKAQVSAIQE 580
Query: 565 KVPED----------VEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTR 614
++ + + V++VDG+QG E+++II+S VRSN G IGFL + +R NV+LTR
Sbjct: 581 RIGDKYTSVSDNLFTLNVRSVDGFQGGEEDIIIISTVRSNCNGNIGFLSNRQRANVALTR 640
Query: 615 AKRKLIVVGDSSTLS 629
A+ L V+G+ TLS
Sbjct: 641 ARHCLWVIGNERTLS 655
>gb|AAF23836.1|AC007234_8 (AC007234) F1E22.16 [Arabidopsis thaliana]
Length = 1075
Score = 122 bits (302), Expect = 2e-26
Identities = 103/326 (31%), Positives = 161/326 (48%), Gaps = 58/326 (17%)
Query: 363 TTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNK--VERFVLAGDHKQLPPTILS- 419
T +SSA L + + +IDEA Q IPL ++ +L GD KQLP I S
Sbjct: 540 TASSSARLHMSS--PIQLLVIDEAAQLKECESAIPLQLRGLQHAILIGDEKQLPAMIKSN 597
Query: 420 --------------------------LEAQELSRTLFEGLIERYPWKSEMLVVQYRMNER 453
+L R+LFE L+ ++L +QYRM+
Sbjct: 598 VGSLILTNYTHIHSLLFAYLISYVQIASEADLGRSLFERLV-LLGHNKQLLNMQYRMHPS 656
Query: 454 IMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKW 513
I FP++EFY KI+ SVR LR + P +G FI+ + ++
Sbjct: 657 ISIFPNREFYDMKILDAPSVR---LRSYEKKFLPEKMYGP-------YSFINIAYGREQF 706
Query: 514 ERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPE---WIGVITPYDDQRDLISMKVPE-- 568
S +N +E +VA+IV KL S+ K +GVI+PY Q I ++ E
Sbjct: 707 GE----GYSSKNLVEVSVVAEIVSKLYSVSRKTGRTISVGVISPYKAQVFAIQERIGEKY 762
Query: 569 ------DVEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVV 622
V V++VDG+QG E+++II+S VRSN G IGFL + +R NV+LTRA+ L ++
Sbjct: 763 NTEGTFTVSVRSVDGFQGGEEDIIIISTVRSNGNGAIGFLSNQQRTNVALTRARYCLWIL 822
Query: 623 GDSSTLSSHET-YKKMIEFFKEKGCF 647
G+ +TL+++ + ++++++ K + CF
Sbjct: 823 GNEATLTNNRSVWRQLVDDAKARNCF 848
>gb|AAF46543.1| (AE003449) CG2990 gene product [Drosophila melanogaster]
Length = 1119
Score = 120 bits (299), Expect = 4e-26
Identities = 98/313 (31%), Positives = 153/313 (48%), Gaps = 50/313 (15%)
Query: 378 YDVAIIDEATQSTIPSILIPLNKVERFVLAGDHKQLPPTILSLEAQE--LSRTLFEGLIE 435
+D I+DEATQ P++L PL +FVL GD +QLPP + S EA++ TLF+ L
Sbjct: 784 FDYCIVDEATQVLQPTVLRPLIHCSKFVLVGDPEQLPPIVRSKEARQRGADETLFQRLDS 843
Query: 436 RYPWKSEMLVVQYRMNERIMEFPSKEFYGGKI-IADESVRGITLRDLVEYQSPNDSWGK- 493
+ +L +QYRMN+ I ++ YGG + A + V G VE + W +
Sbjct: 844 EKA--TAVLSLQYRMNKTITRLANELTYGGDLKCASDEVSGARFE--VELLNEAPRWVQR 899
Query: 494 --ILNPENVIVFIDT--------------------------SKAENKWERQRRGSESR-- 523
+ E + I+T S +E+K E ++ S+ R
Sbjct: 900 ALTTHLEQAVTLINTGDCLERCQEFVYASQRLVDTCSSIEQSFSEDKDEIRKLTSKKRVS 959
Query: 524 --ENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDL---ISMKVPEDVEVKTVDGY 578
N EA IV ++ LL G + IGVI PY Q +L ++ K+ D+E TVD +
Sbjct: 960 KYTNYCEAGIVMHLLRYLLKSGYEASRIGVIAPYRAQVELFKKLASKLDTDLECNTVDQF 1019
Query: 579 QGREKEVIILSLVRSN-------KLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSH 631
QGR+K +II S ++ + E L+D RRL V++TRAK KLI++GD L +
Sbjct: 1020 QGRDKNLIIYSCSKTGGDFSDMERSREAEILEDQRRLTVAITRAKNKLILLGDIKCLEQY 1079
Query: 632 ETYKKMIEFFKEK 644
++++ + ++
Sbjct: 1080 GPFRQLFKHIPDR 1092
Score = 71.0 bits (171), Expect = 4e-11
Identities = 78/270 (28%), Positives = 123/270 (44%), Gaps = 28/270 (10%)
Query: 36 ERERLGRAILNLNGKIIGEELGYFLVKYGRNREIKTE-----------ISVGDLVVISKR 84
ERE+ G AI +L + G+E+ +Y + E+ E +G+ VVIS
Sbjct: 501 EREKEGIAIRHLK-LVKGQEVILEEGRYRQTLELGEEADPSRDLSLSGFDLGEYVVISST 559
Query: 85 DPLKSDLLGTVVEKGKRFIVVALET--VPEWALRDVRIDLYANDITFRRWLENLNTIKKA 142
L + G +V R + + LE ++ ID + + NL +
Sbjct: 560 SRL-AVAAGFIVSIEARRLDLRLERDLSQRYSEETFIIDKHDSQSFATFNFTNLGMLLSE 618
Query: 143 GKR--ALRFYLGLDEPSQGEEV-------NFVPFDKSLNRSQRKAISKALGSEDFFLVHG 193
G+R LR + +P + +V P +LN+ Q+ A +AL + L+ G
Sbjct: 619 GERFQELRDIIVAKKPPEQHKVLPKIILTKGAPILLNLNKVQQNAALRALTTSSHLLIKG 678
Query: 194 PFGTGKTRTLVELIRQEVKRGNKVLATAESNVAVDNLVERLSRSGIKIVRIGHPSRVSKH 253
GTGKT+TLV L+R G VL TA+++ AVDNL+ RL G+ ++R+G SR+ K
Sbjct: 679 LPGTGKTQTLVALVRLLHLLGKSVLITAQTHSAVDNLIMRLLPFGLPMMRLGSGSRIHKQ 738
Query: 254 LHETTLAYLI----TQHELYGELRELRVIG 279
L E + L T EL L + ++G
Sbjct: 739 LEEISEERLTKDCKTVEELEKALGQPSIVG 768
>gb|AAF56255.1| (AE003746) CG6204 gene product [Drosophila melanogaster]
Length = 903
Score = 115 bits (284), Expect = 2e-24
Identities = 134/492 (27%), Positives = 227/492 (45%), Gaps = 75/492 (15%)
Query: 165 VPFDKSLNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNK-----VLA 219
+P D LN SQ+ A +AL E F ++ GP GTGKT V+L+ ++ ++
Sbjct: 444 LPEDLHLNESQKTAFKEALCRE-FSIIQGPPGTGKTHLSVQLVNSLIQNAKALGTGPIIV 502
Query: 220 TAESNVAVDNLVERLSRSGIKIVRIGHPSR---VSKHLHETTLAYLITQHELYGELRELR 276
+N ++D + ++SR +I+R G+ SR +SK TT+ + L R
Sbjct: 503 LTYTNNSLDKFLVKISRYTQEILRFGNQSRDPQISKFNLSTTIKPELVPPRLK------R 556
Query: 277 VIGQSLAEKRDTYTKPTPKFRRGLSDEEIIK--LAERKRGARGLSARLIMEMAEWIKLNR 334
+ E ++ + + EE + LA +++ + ++AE I+ R
Sbjct: 557 IWWLVNCEYKEKFRNLQGLYANFDGSEESYQDTLAAQEK---------LNQVAERIETLR 607
Query: 335 QVQKAFDDARKLEERIARDIIREADVVLTTNSSAALEVVDYDTYD--VAIIDEATQSTIP 392
V + F + RE D++ T + AA + + +EA +
Sbjct: 608 MVFQFF-------------LAREKDLLAMTTTCAARHNFLFRLLQSKCVLFEEAAEIQEA 654
Query: 393 SILIPLNK-VERFVLAGDHKQLPPTILSLEAQELSRTLFEGLIER-YPWKSEMLVVQYRM 450
I+ L E +L GDHKQL P S + ++S LFE LI P+ L +QYRM
Sbjct: 655 HIVACLTPHTEHVILVGDHKQLQPFSGSRKVPQIS--LFERLIVAGLPFSR--LNLQYRM 710
Query: 451 NERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAE 510
I E Y +++ ESV+ EY+ L +N + F+ ++ E
Sbjct: 711 RSCISELLVPSIYD-ELLCSESVK--------EYEDIR------LMSKN-LYFVQHNQPE 754
Query: 511 NKWERQRRGSESRENPLEAEIVAKIVDKLLSIG-VKPEWIGVITPYDDQRDLISMKVPED 569
+ G N EA ++AK+ + L+ K I +++PY+ Q + I +P++
Sbjct: 755 HCMSDMSIG-----NLYEAGVLAKLTEFLIQKAQYKHSDIVILSPYNGQIECIKNALPQN 809
Query: 570 ----VEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDS 625
V+V +VD +QG E +++LSLVRSN G IGFL+ R+ V+L+RA+ L +VG+
Sbjct: 810 YRSTVQVASVDSFQGLEANIVLLSLVRSNISGRIGFLRQANRVCVALSRARWALYIVGNV 869
Query: 626 STLSSHETYKKM 637
+ L +T+ K+
Sbjct: 870 TILK--DTFPKI 879
>gb|AAA58611.1| (M64979) glial factor-1 [Homo sapiens]
Length = 376
Score = 115 bits (284), Expect = 2e-24
Identities = 56/136 (41%), Positives = 91/136 (66%), Gaps = 3/136 (2%)
Query: 513 WERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISMKVPE---D 569
+E + +S+ NP E +V+ + L+ GV I V++PY+ Q DL+ + +
Sbjct: 9 FELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHPE 68
Query: 570 VEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLS 629
+E+K+VDG+QGREKE +ILS VRSN+ GE+GFL + RR+NV++TRA+R + V+ DS T++
Sbjct: 69 LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVN 128
Query: 630 SHETYKKMIEFFKEKG 645
+H K ++E+F + G
Sbjct: 129 NHAFLKTLVEYFTQHG 144
>pir||A70369 hypothetical protein aq_791 - Aquifex aeolicus
>gi|2983352|gb|AAC06940.1| (AE000707) putative protein
[Aquifex aeolicus]
Length = 163
Score = 112 bits (278), Expect = 1e-23
Identities = 65/138 (47%), Positives = 92/138 (66%), Gaps = 4/138 (2%)
Query: 8 NRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEEL-GYFLVKYGRN 66
N K L+++ER A+ E E++ LSG ERE+ GRAILNL K +G L G +LV+Y R
Sbjct: 14 NYFKRLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLVRYSRP 73
Query: 67 REI-KTEISVGDLVVISKRDPLKSDLLGTVVEKGKRFIVVAL-ETVPEWAL-RDVRIDLY 123
+ + KTEIS GD+V++SK P ++ GTV EK ++VVA + P +AL +DVRIDL+
Sbjct: 74 QGLPKTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPPPYALGKDVRIDLF 133
Query: 124 ANDITFRRWLENLNTIKK 141
+N+ITF+R E L K+
Sbjct: 134 SNEITFKRMEEALKNFKE 151
>pir||D64588 probable DNA helicase - Helicobacter pylori (strain 26695)
Length = 274
Score = 109 bits (270), Expect = 9e-23
Identities = 76/284 (26%), Positives = 147/284 (51%), Gaps = 44/284 (15%)
Query: 378 YDVAIIDEATQSTIPSILIPLNKVERFVLAGDHKQLPPTI----------------LSLE 421
+DV IIDE ++T P ILIP + ++ +L GDH QLPP+I +++
Sbjct: 3 FDVTIIDETGRATAPEILIPALRTKKLILIGDHNQLPPSIDRYLLEQLESDDIQNLDAID 62
Query: 422 AQELSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDL 481
Q L + FE L + P ++ ++ ++RM I S+ FY E ++ +++
Sbjct: 63 RQLLEESFFENLYKYIPESNKAMLNEFRMPASIGSLVSQLFY------KEKLKNGVIKNT 116
Query: 482 VEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLLS 541
++ +P+N+I +I+ E + + ++ S ++ + + + ++++L+
Sbjct: 117 SQF----------YDPKNIIRWIN---VEGEHQLEKTSSYNKNQVQKIIELLEQINRVLN 163
Query: 542 IGVKPEWIGVITPYDDQRDLISMKVP-------EDVEVKTVDGYQGREKEVIILSLVRSN 594
+ IG+ITPY+ Q+ + +V +++++ TVD +QG + ++II S V++
Sbjct: 164 QRKIRKTIGIITPYNAQKRCLRSEVEKYGFKNFDELKIDTVDAFQGEKADIIIYSTVKT- 222
Query: 595 KLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMI 638
G + FL D +RLNV+++RAK LI VG S + + +K I
Sbjct: 223 -YGNLSFLIDSKRLNVAISRAKENLIFVGKKSFFENLRSDEKNI 265
>pir||T41111 hypothetical ATP binding protein - fission yeast
(Schizosaccharomyces pombe) >gi|3581879|emb|CAA20777.1|
(AL031540) hypothetical protein [Schizosaccharomyces
pombe]
Length = 1015
Score = 101 bits (250), Expect = 2e-20
Identities = 84/291 (28%), Positives = 146/291 (49%), Gaps = 38/291 (13%)
Query: 354 IIREADVV--LTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIP--LNKVERFVLAGD 409
++R A+V+ TT + ++++ + I+EA + +IP +E+ VL GD
Sbjct: 679 LLRGANVIGMTTTGLNKYRDILERINPKICFIEEAAD-VLEGPIIPAVFPSLEQLVLIGD 737
Query: 410 HKQLPPTILSLEAQE----LSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGG 465
HKQL P + ++ LS ++FE L+E + L +Q RM+ +I S +
Sbjct: 738 HKQLRPGCSTYALRQDPFNLSISMFERLVEN-DMEYTRLTMQRRMHPQIRRLVSSVY--- 793
Query: 466 KIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESREN 525
++ ++ +Y G+I F+ S+ E+ G S+ N
Sbjct: 794 --------EDLSDYEITKYWPSIPGMGEIRR-----FFLTHSRIEDN-----DGFASKIN 835
Query: 526 PLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISMKVPED-------VEVKTVDGY 578
EA+++ + L++ GV+P+ I +T Y Q+DLI + E ++V TVDGY
Sbjct: 836 LFEAQMLVQFAVYLINNGVEPQKITCLTFYAAQKDLIERLLSESLNREKHFIKVATVDGY 895
Query: 579 QGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLS 629
QG E +V++LSLVR+N E+GFL R+ VSL+RA+R L + G++ ++
Sbjct: 896 QGEENDVVLLSLVRNNDRTEVGFLSSPHRVCVSLSRARRGLFIFGNAQLVA 946
>gb|AAF79736.1|AC005106_17 (AC005106) T25N20.11 [Arabidopsis thaliana]
Length = 1048
Score = 99.1 bits (243), Expect = 1e-19
Identities = 100/335 (29%), Positives = 164/335 (48%), Gaps = 60/335 (17%)
Query: 360 VVLTTNSSAAL---EVVDYDTYDVAIIDEATQSTIPSILIPLNKV----ERFVLAGDHKQ 412
+V++T SA+L E V+ + ++DEA Q++ P +I ++ + VLAGD +Q
Sbjct: 564 LVVSTYMSASLLNAEGVNRGHFTHILLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQ 623
Query: 413 LPPTILSLEAQELS--RTLFEGLIE---------RYPWKSEMLVVQYRMNERIMEFPSKE 461
L P I S +A+ L ++ E L E Y K LV YR + I++ PSK
Sbjct: 624 LGPVIYSRDAESLGLGKSYLERLFECDYYCEGDENYVTK---LVKNYRCHPEILDLPSKL 680
Query: 462 FYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSE 521
FY G+++A + L L + N E +VF + +R G+
Sbjct: 681 FYDGELVASKEDTDSVLASL----------NFLPNKEFPMVFYGIQGCD-----EREGNN 725
Query: 522 -SRENPLEAEIVAKIVDKLLSIG-VKPEWIGVITPYDDQ----RDLISMKVPEDVEVKTV 575
S N +E V + + +L + V+ E IGVITPY Q ++++ +V+V +V
Sbjct: 726 PSWFNRIEISKVIETIKRLTANDCVQEEDIGVITPYRQQVMKIKEVLDRLDMTEVKVGSV 785
Query: 576 DGYQGREKEVIILSLVRSN-KLGE------IGFLKDLRRLNVSLTRAKRKLIVVGDSSTL 628
+ +QG+EK+VII+S VRS K E +GFL + RR NV++TRA L+++G+ +
Sbjct: 786 EQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITRAISLLVIIGNPHII 845
Query: 629 SSHETYKKM----IEFFKEKGC-------FIEFPF 652
+ K+ ++ +GC F+E PF
Sbjct: 846 CKDMNWNKLLWRCVDNNAYQGCGLPEQEEFVEEPF 880
>gb|AAF58307.1| (AE003816) CG6701 gene product [Drosophila melanogaster]
Length = 1194
Score = 96.3 bits (236), Expect = 9e-19
Identities = 86/295 (29%), Positives = 145/295 (49%), Gaps = 40/295 (13%)
Query: 376 DTYDVAIIDEATQSTIPSILI----PLNKVERFVLAGDHKQLPPTILSLEAQE--LSRTL 429
+ Y +DEA ST +L+ L+ +L+GDHKQL P + S A E L TL
Sbjct: 618 NVYTHVFVDEAAASTEAEVLMGITCTLSPTLNLILSGDHKQLGPVLQSQRANEWGLGLTL 677
Query: 430 FEGLIERYPWKSE-----------MLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITL 478
FE L++R ++ E L+ +R + I+ + +Y G + E+ I
Sbjct: 678 FERLLQRKCYQVEEDGSYNASVQTRLIRNFRSHPEIVSLYNNMYYEGHL-RTEAPMEIVC 736
Query: 479 RDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDK 538
R + PN ++ + + VF T ++ S S N E ++V V
Sbjct: 737 RFHNWFYLPNATFPIMFHS----VFGTTMNTKS--------SVSLCNNKEIDVVMDYVKD 784
Query: 539 LLSIGVKPEW-----IGVITPYDDQ----RDLISMKVPEDVEVKTVDGYQGREKEVIILS 589
L+ G+ E IG+I+PY +Q ++ ++M+ ++ +V+ +QG+EK VII+S
Sbjct: 785 LMYFGLNGEKLLQTDIGIISPYKNQYQRIQEQLNMRNWSQIDCGSVELFQGKEKHVIIVS 844
Query: 590 LVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFFKEK 644
VRS ++GFL + RRLNV L+R LI++G+ TLS + ++ +IE + +
Sbjct: 845 FVRSFT-PKLGFLNNERRLNVLLSRPISLLILIGNPRTLSQNSDFQHIIEMCRNR 898
>dbj|BAA92642.1| (AB037825) KIAA1404 protein [Homo sapiens]
Length = 1925
Score = 95.2 bits (233), Expect = 2e-18
Identities = 88/313 (28%), Positives = 149/313 (47%), Gaps = 35/313 (11%)
Query: 344 RKLEERIARD--IIREADVVLTTNSSAAL--EVVDYDTYDVAIIDEATQSTIPSILIPLN 399
R E R+ D I+++A VV T + AA +++ + I++EA + + L+
Sbjct: 969 RMAELRLQEDLHILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLS 1028
Query: 400 KV-ERFVLAGDHKQLPPTILSLEAQE---LSRTLFEGLIE-RYPWKSEMLVVQYRMNERI 454
K + +L GDH+QL P+ + + L +LFE L++ P+ L Q+RM I
Sbjct: 1029 KACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVR--LNYQHRMCPEI 1086
Query: 455 MEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWE 514
+ Y +DL + S + KI + + F++ N E
Sbjct: 1087 ARLLTPHIY---------------QDLENHPSVL-KYEKIKGVSSNLFFVE----HNFPE 1126
Query: 515 RQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQ----RDLISMKVPEDV 570
++ + +S +N EA V ++ L P I ++T Y Q R L+ K V
Sbjct: 1127 QEIQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGV 1186
Query: 571 EVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSS 630
V VD YQG E ++I+LSLVRSN+ G++GFL+ R+ V+L+RAK+ + +G+ L+
Sbjct: 1187 RVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAK 1246
Query: 631 HETYKKMIEFFKE 643
+ K+I +E
Sbjct: 1247 VPLWSKIIHTLRE 1259
>dbj|BAB14696.1| (AK023836) unnamed protein product [Homo sapiens]
Length = 1137
Score = 95.2 bits (233), Expect = 2e-18
Identities = 88/313 (28%), Positives = 149/313 (47%), Gaps = 35/313 (11%)
Query: 344 RKLEERIARD--IIREADVVLTTNSSAAL--EVVDYDTYDVAIIDEATQSTIPSILIPLN 399
R E R+ D I+++A VV T + AA +++ + I++EA + + L+
Sbjct: 254 RMAELRLQEDLHILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLS 313
Query: 400 KV-ERFVLAGDHKQLPPTILSLEAQE---LSRTLFEGLIE-RYPWKSEMLVVQYRMNERI 454
K + +L GDH+QL P+ + + L +LFE L++ P+ L Q+RM I
Sbjct: 314 KACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVR--LNYQHRMCPEI 371
Query: 455 MEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWE 514
+ Y +DL + S + KI + + F++ N E
Sbjct: 372 ARLLTPHIY---------------QDLENHPSVL-KYEKIKGVSSNLFFVE----HNFPE 411
Query: 515 RQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQ----RDLISMKVPEDV 570
++ + +S +N EA V ++ L P I ++T Y Q R L+ K V
Sbjct: 412 QEIQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGV 471
Query: 571 EVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSS 630
V VD YQG E ++I+LSLVRSN+ G++GFL+ R+ V+L+RAK+ + +G+ L+
Sbjct: 472 RVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAK 531
Query: 631 HETYKKMIEFFKE 643
+ K+I +E
Sbjct: 532 VPLWSKIIHTLRE 544
>pir||T42668 hypothetical protein DKFZp434B0717.1 - human (fragment)
>gi|6453506|emb|CAB61391.1| (AL133068) hypothetical
protein [Homo sapiens]
Length = 678
Score = 94.8 bits (232), Expect = 3e-18
Identities = 122/444 (27%), Positives = 193/444 (42%), Gaps = 79/444 (17%)
Query: 262 LITQHELYGELRELRVI--GQSLAEKRDTYTKPTPKFRRGLSDEEIIKLAERKRGARGLS 319
L + L G+ R L I G K T + + L D I+ A A +
Sbjct: 218 LAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADLVC 277
Query: 320 ARL----IMEMAEWIKLNR--QVQKAFDDARKLEERIARDIIREAD--VVLTTNSSAALE 371
RL ++ A +++N + ++ DA K R DI + + +++TT SS+ L
Sbjct: 278 LRLHESKVLRPATMVRVNATCRFEEIVIDAVKPYCRDGEDIWKASRFRIIITTCSSSGLF 337
Query: 372 V---VDYDTYDVAIIDEATQSTIPSILIPLNKVE----RFVLAGDHKQLPPTILSLEAQE 424
V + +DEA Q++ P LIPL + + VLAGD QL P I S A
Sbjct: 338 YQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSRLAMA 397
Query: 425 --LSRTLFEGLIERYPWKSE----------------MLVVQYRMNERIMEFPSKEFYGGK 466
L+ + E L+ R ++ + LV YR +E ++ PS+ FY +
Sbjct: 398 YGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRE 457
Query: 467 --IIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRE 524
+ AD +V L W K+ ++F RGSE+RE
Sbjct: 458 LEVCADPTVVTSLL-----------GWEKLPKKGFPLIFHGV-----------RGSEARE 495
Query: 525 -------NPLEAEIVAK---IVDKLLSIGVKPEWIGVITPYDDQRDLISMKVPE----DV 570
NP EA V + ++ +S V IGVITPY Q + I + + D+
Sbjct: 496 GKSPSWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIRILLRNVDLMDI 555
Query: 571 EVKTVDGYQGREKEVIILSLVRSNK------LGEIGFLKDLRRLNVSLTRAKRKLIVVGD 624
+V +V+ +QG+E VII+S VRSN+ +GFL + +R NV++TR K LIV+G+
Sbjct: 556 KVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIVLGN 615
Query: 625 SSTLSSHETYKKMIEFFKEKGCFI 648
L + ++E+ G ++
Sbjct: 616 PHVLVRDPCFGALLEYSITNGVYM 639
>pir||T47242 DNA helicase homolog - fission yeast (Schizosaccharomyces pombe)
(fragment) >gi|3329511|gb|AAC39502.1| (AF075169) DNA
helicase homolog [Schizosaccharomyces pombe]
Length = 191
Score = 93.2 bits (228), Expect = 8e-18
Identities = 63/189 (33%), Positives = 97/189 (50%), Gaps = 14/189 (7%)
Query: 378 YDVAIIDEATQSTIPSILIPLNKVERFVLAGDHKQLPPTILSLEAQE--LSRTLFEGLIE 435
+D IIDEA+Q +P L PL E+FVL GDH QLPP + + + LS +LF+ L E
Sbjct: 6 FDYCIIDEASQIPLPICLGPLQLAEKFVLVGDHYQLPPLVKNSRTSKDGLSLSLFKLLSE 65
Query: 436 RYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADES--------VRGITLRDLVEYQSP 487
++P L +QYRMNE I S+ YGG ++ + L D + S
Sbjct: 66 KHPEAVTTLRLQYRMNEDINSLSSELIYGGNLVCGSKTISQKKLILPKAHLSDGLPDSSS 125
Query: 488 NDSW-GKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKP 546
+ W K++NP + ++F +T ++ + + + EN EA ++ + V L GVK
Sbjct: 126 SLHWVNKLINPSHSVIFFNT---DDILGVESKTNNILENHTEAFLIEQAVSSFLERGVKQ 182
Query: 547 EWIGVITPY 555
IG+I+ Y
Sbjct: 183 SSIGIISIY 191
>gb|AAF47775.1| (AE003478) CG11513 gene product [Drosophila melanogaster]
Length = 1274
Score = 92.1 bits (225), Expect = 2e-17
Identities = 83/297 (27%), Positives = 143/297 (47%), Gaps = 47/297 (15%)
Query: 382 IIDEATQSTIPSILIPL----NKVERFVLAGDHKQLPPTILSLEAQEL--SRTLFEGLIE 435
+ DEA Q T P ++P+ K + VL+GD +QL + S A ++ S + E L+E
Sbjct: 946 LFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERLLE 1005
Query: 436 RYPWKSEM----------------LVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLR 479
R P++ ++ L+ YR IM S+ FY ++I S +
Sbjct: 1006 RSPYRKDLQRFPESSGYNPLVLTKLLYNYRALPSIMSIYSRLFYDDELIPVLSEKDSRES 1065
Query: 480 DLVE-----YQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAK 534
L+ ++S D P+ F EN RQ S S NP E V
Sbjct: 1066 RLLSKLRCVFESEKDI------PQAHGTFFYGIIGEN---RQNNDSPSWFNPQEVREVFL 1116
Query: 535 IVDKLLSIGVKPEWIGVITPYDDQRDLI-SMKVPEDV---EVKTVDGYQGREKEVIILSL 590
+ L V + IG+ITPY Q ++ SM + DV ++ +V+ +QG+E+++I++S
Sbjct: 1117 MTIALYRANVTADQIGIITPYQKQVKMLRSMFIGTDVVMPKIGSVEEFQGQERDIILIST 1176
Query: 591 VRSNK-------LGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEF 640
VRS++ +GF++ +RLNV+++RA+ +I+ G+ L+ E ++++I F
Sbjct: 1177 VRSSEEILRMDARFSLGFVRCSKRLNVAVSRARAMMIIFGNPHLLAVDECWRQLILF 1233
>gi|6678920 Moloney leukemia virus 10 [Mus musculus]
>gi|127560|sp|P23249|MV10_MOUSE PROTEIN MOV-10
>gi|110821|pir||A39611 probable GTP-binding protein -
mouse >gi|53169|emb|CAA36803.1| (X52574) GTP binding
protein [Mus musculus]
Length = 1004
Score = 91.7 bits (224), Expect = 2e-17
Identities = 103/358 (28%), Positives = 163/358 (44%), Gaps = 73/358 (20%)
Query: 351 ARDIIREADVVLTTNSSAALEV-----VDYDTYDVAIIDEATQSTIPSILIPL------- 398
A+ +++ V++TT +A+ V +D+ T+ IDEA P L+ +
Sbjct: 610 AKKHLQQYRVLITTLITASRLVSAQFPIDHFTH--IFIDEAGHCMEPESLVAIAGLMDVK 667
Query: 399 ---NKVERFVLAGDHKQLPPTILSLEAQELSRTLFEGLIERY---------------PWK 440
N + VLAGD +QL P + S A L L L+ER P
Sbjct: 668 ETGNPGGQLVLAGDPRQLGPVLRSPLA--LKHGLGYSLLERLLAYNSLYKKGPNGYDPQF 725
Query: 441 SEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENV 500
L+ YR + I++ P++ +Y G++ A D+V+ + W +
Sbjct: 726 ITKLLRNYRSHPTILDIPNQLYYDGELQA--------CADVVDRER-FCRWEGLPQQGFP 776
Query: 501 IVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVK-------PEWIGVIT 553
I+F K ER+ S S NP EA V + +LL+ K P +GVI+
Sbjct: 777 IIFHGVM---GKDEREGN-SPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRNVGVIS 832
Query: 554 PYDDQ------------RDLISMKVPEDVEVKTVDGYQGREKEVIILSLVRSNKLG---- 597
PY Q R+L + +D++V +V+ +QG+E+ VI++S VRS++
Sbjct: 833 PYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLD 892
Query: 598 ---EIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFFKEKGCFIEFPF 652
+GFLK+ +R NV++TRAK LIVVG+ L +K +EF KE G + PF
Sbjct: 893 LDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKTFLEFCKENGGYTGCPF 950
>dbj|BAB13457.1| (AB046851) KIAA1631 protein [Homo sapiens]
Length = 1032
Score = 90.5 bits (221), Expect = 5e-17
Identities = 106/366 (28%), Positives = 169/366 (45%), Gaps = 70/366 (19%)
Query: 342 DARKLEERI-ARDIIREADVVLTTNSSAALEV-----VDYDTYDVAIIDEATQSTIPSIL 395
DA+K E A+ ++E V++TT +A V +D+ T+ IDEA P L
Sbjct: 628 DAKKGEYVFPAKKKLQEYRVLITTLITAGRLVSAQFPIDHFTH--IFIDEAGHCMEPESL 685
Query: 396 IPLNKVE----------RFVLAGDHKQLPPTILSLEAQE--LSRTLFEGLI--------- 434
+ + + + VLAGD +QL P + S Q+ L +L E L+
Sbjct: 686 VAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYSLLERLLTYNSLYKKG 745
Query: 435 -ERY-PWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWG 492
+ Y P L+ YR + I++ P++ +Y G++ A D+V+ + W
Sbjct: 746 PDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQA--------CADVVDRER-FCRWA 796
Query: 493 KILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVK------- 545
+ I+F K ER+ S S NP EA V + LL+ K
Sbjct: 797 GLPRQGFPIIFHGVM---GKDEREGN-SPSFFNPEEAATVTSYLKLLLAPSSKKGKARLS 852
Query: 546 PEWIGVITPYDDQ------------RDLISMKVPEDVEVKTVDGYQGREKEVIILSLVRS 593
P +GVI+PY Q R+L + +D++V +V+ +QG+E+ VI++S VRS
Sbjct: 853 PRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRS 912
Query: 594 NKLG-------EIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFFKEKGC 646
++ +GFLK+ +R NV++TRAK LI+VG+ L +K +EF KE G
Sbjct: 913 SQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNPLLLGHDPDWKVFLEFCKENGG 972
Query: 647 FIEFPF 652
+ PF
Sbjct: 973 YTGCPF 978
>emb|CAB63041.1| (AL022328) dJ402G11.8 (novel protein similar to mouse MOV10 (GB110)
and yeast and plant predicted proteins) [Homo sapiens]
Length = 417
Score = 90.1 bits (220), Expect = 7e-17
Identities = 105/362 (29%), Positives = 162/362 (44%), Gaps = 73/362 (20%)
Query: 335 QVQKAFDDARKLEERIARDIIREADVV-LTTNSSAALE---VVDYDTYDVAIIDEATQST 390
QV A D+R L + AD+V L + S L+ +V + +DEA Q++
Sbjct: 42 QVHFALPDSRIL---VCAPSNSAADLVCLRLHESKVLQPATMVRVGHFTHVFVDEAGQAS 98
Query: 391 IPSILIPLNKVE----RFVLAGDHKQLPPTILSLEAQE--LSRTLFEGLIERYPWKSE-- 442
P LIPL + + VLAGD QL P I S A L+ + E L+ R ++ +
Sbjct: 99 EPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDEN 158
Query: 443 --------------MLVVQYRMNERIMEFPSKEFYGGK--IIADESVRGITLRDLVEYQS 486
LV YR +E ++ PS+ FY + + AD +V L
Sbjct: 159 AFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPTVVTSLL-------- 210
Query: 487 PNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRE-------NPLEAEIVAK---IV 536
W K+ ++F RGSE+RE NP EA V + ++
Sbjct: 211 ---GWEKLPKKGFPLIFHGV-----------RGSEAREGKSPSWFNPAEAVQVLRYCCLL 256
Query: 537 DKLLSIGVKPEWIGVITPYDDQRDLISMKVPE----DVEVKTVDGYQGREKEVIILSLVR 592
+S V IGVITPY Q + I + + D++V +V+ +QG+E VII+S VR
Sbjct: 257 AHSISSQVSASDIGVITPYRKQVEKIRILLRNVDLMDIKVGSVEEFQGQEYLVIIISTVR 316
Query: 593 SNK------LGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFFKEKGC 646
SN+ +GFL + +R NV++TR K LIV+G+ L + ++E+ G
Sbjct: 317 SNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALLEYSITNGV 376
Query: 647 FI 648
++
Sbjct: 377 YM 378
>dbj|BAA90895.1| (AK000033) unnamed protein product [Homo sapiens]
Length = 338
Score = 87.8 bits (214), Expect = 3e-16
Identities = 91/310 (29%), Positives = 141/310 (45%), Gaps = 66/310 (21%)
Query: 383 IDEATQSTIPSILIPLNKVE----RFVLAGDHKQLPPTILSLEAQE--LSRTLFEGLIER 436
+DEA Q++ P LIPL + + VLAGD QL P I S A L+ + E L+ R
Sbjct: 12 VDEAGQASEPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSR 71
Query: 437 YPWKSE----------------MLVVQYRMNERIMEFPSKEFYGGK--IIADESVRGITL 478
++ + LV YR +E ++ PS+ FY + + AD +V L
Sbjct: 72 PAYQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPTVVTSLL 131
Query: 479 RDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRE-------NPLEAEI 531
W K+ ++F RGSE+RE NP EA
Sbjct: 132 -----------GWEKLPKKGFPLIFHGV-----------RGSEAREGKSPSWFNPAEAVQ 169
Query: 532 VAK---IVDKLLSIGVKPEWIGVITPYDDQRDLISMKVPE----DVEVKTVDGYQGREKE 584
V + ++ +S V +GVITPY Q + I + + D++V +V+ QG+E
Sbjct: 170 VLRYCCLLAHSISSQVSASDVGVITPYRKQVEKIRILLRNVDLMDIKVGSVEELQGQEYL 229
Query: 585 VIILSLVRSNK------LGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMI 638
VII+S VRSN+ +GFL + +R NV++TR K LIV+G+ L + ++
Sbjct: 230 VIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALL 289
Query: 639 EFFKEKGCFI 648
E+ G ++
Sbjct: 290 EYSITNGVYM 299
>emb|CAC15527.1| (AL121829) dJ697K14.7 (putative novel protein) [Homo sapiens]
Length = 451
Score = 85.0 bits (207), Expect = 2e-15
Identities = 95/341 (27%), Positives = 150/341 (43%), Gaps = 78/341 (22%)
Query: 337 QKAFDDARKLEERIARDIIREADVVLTTNS---SAALEVVDYDTYDVAIIDEATQSTIPS 393
+K +ARK E + +V+L T S SA+L+++D ++DEA +T P
Sbjct: 84 KKVLWEARKFE-------LDRHEVILCTCSCAASASLKILDVRQI---LVDEAGMATEPE 133
Query: 394 ILIPL---NKVERFVLAGDHKQLPPTILSLEAQELSRTLFEGLIERYPWKSEMLVVQYRM 450
LIPL + E+ VL GDHKQL P + + Q L L L ERY + ML QYRM
Sbjct: 134 TLIPLVQFPQAEKVVLLGDHKQLRPVVKNERLQNLG--LDRSLFERYHEDAHMLDTQYRM 191
Query: 451 NERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDS----WGKILNPENVIVFIDT 506
+E I FPS FY K+ ++ +G+ V + +S +G + E ++
Sbjct: 192 HEGICAFPSVAFYKSKL---KTWQGLRRPPSVLGHAGKESCPVIFGHVQGHERSLLVSTD 248
Query: 507 SKAENKWERQRRGSESRENPLEAEIVAKIVDKL-LSIGVKPEWIGVITPYDDQRDLISMK 565
EN S+ N E V +I +L L V+P+ I V+TPY+ Q IS
Sbjct: 249 EGNEN----------SKANLEEVAEVVRITKQLTLGRTVEPQDIAVLTPYNAQASEISKA 298
Query: 566 VPED----VEVKTVDGYQGR-------------------------EKEVIILSLVRSNKL 596
+ + V V ++ QG E +++S VR+
Sbjct: 299 LRREGIAGVAVSSITKSQGEAGGSWVGPGGWAQRQQGLTSHPAGSEWRYVLVSTVRTCAK 358
Query: 597 GE-------------IGFLKDLRRLNVSLTRAKRKLIVVGD 624
+ +GF+ D ++NV++TRA+ L ++G+
Sbjct: 359 SDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIGE 399
>pir||G64575 conserved hypothetical protein HP0447 - Helicobacter pylori
(strain 26695) >gi|2313555|gb|AAD07514.1| (AE000560)
conserved hypothetical protein [Helicobacter pylori
26695]
Length = 360
Score = 84.3 bits (205), Expect = 4e-15
Identities = 91/310 (29%), Positives = 149/310 (47%), Gaps = 44/310 (14%)
Query: 363 TTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNKV-ERFVLAGDHKQLPPTI---- 417
T + ALE + +D I+DEA ++ +L+ + ER +L GD +QLP +
Sbjct: 53 TGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEI 112
Query: 418 ---LSLEAQE--------LSRTLFEGLIERYPWKSEM--------LVVQYRMNERIMEFP 458
L E+Q+ L ++F+ L ER E+ L +QY M+ + E
Sbjct: 113 GKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELV 172
Query: 459 SKEFYGGKIIADES-VRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQR 517
S FY + ES ++G L + P ++L+ + +ID E+K +R
Sbjct: 173 SDVFYKPHNESFESPLKGKHLEE-----KPFKHNLRVLD-NKPLAWIDVK--ESKEKRNA 224
Query: 518 RGSESRENPLEAEIVAKIVDKLLSIGVKPE---WIGVITPYDDQRDLI--SMKVPEDVEV 572
GS RE+ + A + + L + +K E GVIT + +Q+ L+ ++K ++E+
Sbjct: 225 DGSYYRESEITA------IKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYANLEI 278
Query: 573 KTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHE 632
TVD +QG+E +V+ LS VR+ GFLK L V+L+R KR LIV GD + E
Sbjct: 279 GTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPE 338
Query: 633 TYKKMIEFFK 642
+ K+ F+
Sbjct: 339 SKDKVSGLFE 348
>pir||B75198 DNA helicase related protein PAB0067 - Pyrococcus abyssi (strain
Orsay) >gi|5457542|emb|CAB49033.1| (AJ248283) DNA
HELICASE RELATED PROTEIN [Pyrococcus abyssi]
Length = 1308
Score = 83.1 bits (202), Expect = 9e-15
Identities = 129/517 (24%), Positives = 208/517 (39%), Gaps = 145/517 (28%)
Query: 171 LNRSQRKAISKALGSEDFFLVHGPFGTGKTRTLVELIRQEVKRGNKVLATAESNVAVDNL 230
LN QRK + + GP GTGKT + VLA A S +
Sbjct: 839 LNEDQRKFVLDI--DHRIVTLQGPPGTGKTSGAI---------APAVLARAYSTI----- 882
Query: 231 VERLSRSGIKIVRIGHPSRVSKHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYT 290
+ +S + IV + H LI + L EL+ ++ +
Sbjct: 883 --KQGKSALFIV--------TALSHRAVNEALIRTYRLKEELKNIKEL------------ 920
Query: 291 KPTPKFRRGLSDEEIIKLAERKRGARGLSARLIMEMAEWIKLNRQVQKAFDDARKLEERI 350
+ RG+S EE I+ +R+ G IK++ + + F +
Sbjct: 921 -KNVELIRGVSGEEAIEPMKRELGG--------------IKVDIRARFTFSKST------ 959
Query: 351 ARDIIREADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNKVE-RFVLAGD 409
+ ++ T + V +Y+ D+ +IDEA+ +P L+ + + +L GD
Sbjct: 960 ---LFPTVKILFATPQTVFKLVKNYEA-DLVVIDEASMMDLPMFLLATKNAKGQVLLVGD 1015
Query: 410 HKQLPPTIL-----------------------------SLEAQELSRTLFEGLIERYP-- 438
H+Q+ P + LE +EL R F+ ++ R P
Sbjct: 1016 HRQMQPIQVHEWELEDRKTIEEHLPFLSALNFIRFLRGELEERELKR--FKRILGRNPPK 1073
Query: 439 WKSEM--------LVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSP--- 487
WK + L +R+ + + E S+ FY S GI LR E
Sbjct: 1074 WKVDKEDVLPMHRLRETFRLPQALAELHSELFY--------SFDGIKLRSRKEPSEEIAR 1125
Query: 488 -------NDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLL 540
N+ IL+P+ +V I GS S+ N LEA IV +IV+ L
Sbjct: 1126 ALRNAGKNEFLRFILDPDYPVVLI---------VHDENGS-SKVNELEAGIVKEIVEALN 1175
Query: 541 SIGVKPEWIGVITPYDDQRDLISMKVPEDVEVKTVDGYQGREKEVIILSLVRSNK---LG 597
+ V GV+ PY Q+ LI V +V+V TV+ +QG E+++II+S+ S+ L
Sbjct: 1176 GVDV-----GVVVPYRAQKRLIRSLV--NVQVDTVERFQGGERDIIIVSMTSSDPSYLLK 1228
Query: 598 EIGFLKDLRRLNVSLTRAKRKLIVVGDSS--TLSSHE 632
+ FL D RLNV+ +RA+ KLI++ + TLS+ +
Sbjct: 1229 VMDFLYDPNRLNVAGSRAREKLILIASRNLFTLSARD 1265
>emb|CAB60444.1| (AL132853) cDNA EST yk10h1.5 comes from this gene~cDNA EST yk27d4.5
comes from this gene~cDNA EST yk42b2.5 comes from this
gene~cDNA EST yk49b5.5 comes from this gene~cDNA EST
yk147h7.5 comes from this gene~cDNA EST yk192e10.5 comes
from this gene~cDNA>
Length = 1212
Score = 82.7 bits (201), Expect = 1e-14
Identities = 87/299 (29%), Positives = 139/299 (46%), Gaps = 46/299 (15%)
Query: 354 IIREADVVLTTNSSAAL---EVVDYD-TYDVAIIDEATQSTIPSILIPL---------NK 400
+++EA ++ T + AAL E+V YD +++EA Q IPL N+
Sbjct: 710 LVKEAKIIAMTCTHAALRRNELVKLGFRYDNIVMEEAAQILEVETFIPLLLQNPQDGHNR 769
Query: 401 VERFVLAGDHKQLPPTILSLEAQELS---RTLFEGLIERYPWKSEMLVVQYRMNERIMEF 457
++R+++ GDH QLPP + + Q+ S ++LF L+ R + L Q R +I E
Sbjct: 770 LKRWIMIGDHHQLPPVVQNQAFQKYSNMEQSLFARLV-RLSVPNVQLDRQGRARAQIAEL 828
Query: 458 PSKEFYG-GKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQ 516
+ G G + V G L ++Q+ N + FID E Q
Sbjct: 829 YQWRYNGLGNL---PHVDG-----LPQFQNANAGFAFPFQ------FIDIPDFNGHGETQ 874
Query: 517 RRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLI----------SMKV 566
+N EAE + + +G E I ++T Y+ Q LI + +
Sbjct: 875 P-SPHFYQNLGEAEYACALYTYMRILGYPAEKISILTTYNGQAQLIRDVFQRRCDTNPLI 933
Query: 567 PEDVEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDS 625
+V TVD YQG++ + IILSLV++ +G I +D+RRL V+L+RA+ L V+G S
Sbjct: 934 GMPAKVSTVDKYQGQQNDFIILSLVKTRNIGHI---RDVRRLVVALSRARLGLYVLGRS 989
>pir||T46441 hypothetical protein DKFZp434C0927.1 - human
>gi|6808062|emb|CAB70881.1| (AL137700) hypothetical
protein [Homo sapiens]
Length = 239
Score = 82.7 bits (201), Expect = 1e-14
Identities = 65/209 (31%), Positives = 100/209 (47%), Gaps = 32/209 (15%)
Query: 440 KSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPEN 499
K +L QYR + I + FY G ++ G+T + +SP W L N
Sbjct: 4 KPILLRTQYRCHPAISAIANDLFYKGALM-----NGVTEIE----RSPLLEWLPTLCFYN 54
Query: 500 VIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQR 559
V K Q S N EA K++ L++ G+ IGVIT Y Q
Sbjct: 55 V-----------KGLEQIERDNSFHNVAEATFTLKLIQSLIASGIAGSMIGVITLYKSQM 103
Query: 560 -------DLISMKVPE--DVEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNV 610
+ P+ V+V TVD +QG EKE+IILS VR+ ++GF+ +R+NV
Sbjct: 104 YKLCHLLSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTR---QVGFIDSEKRMNV 160
Query: 611 SLTRAKRKLIVVGDSSTLSSHETYKKMIE 639
+LTR KR L++VG+ + L ++ + ++I+
Sbjct: 161 ALTRGKRHLLIVGNLACLRKNQLWGRVIQ 189
>pir||T27684 hypothetical protein ZK1067.2 - Caenorhabditis elegans
>gi|3881525|emb|CAA93884.1| (Z70038) cDNA EST yk19a4.3
comes from this gene~cDNA EST yk19a4.5 comes from this
gene~cDNA EST yk224b3.5 comes from this gene~cDNA EST
yk357f10.5 comes from this gene~cDNA EST yk518c10.5 comes
from this gene [Caenorhabditis elegans]
Length = 2219
Score = 81.5 bits (198), Expect = 3e-14
Identities = 101/392 (25%), Positives = 181/392 (45%), Gaps = 59/392 (15%)
Query: 278 IGQSLAEKRDTYTKPTPKFRRGLSD-EEIIKLAERKRGARGLSARLIMEMAEWIKLNRQV 336
I ++E +D P ++ L+D + I LA KR + ++ + L RQ+
Sbjct: 1124 INNLVSEIKDMILSSQPVPKKDLNDIKYIFSLARLKRWSLYITWCDALRSIVTENLPRQI 1183
Query: 337 QK---AFDDARKLEERIARDIIREADVV--LTTNSSAALEVVDYDTYDVAIIDEATQSTI 391
++ A ++ + + R+ +I+R ++ TT S ++ + I++EA +
Sbjct: 1184 REYREACENFKNAQNRVDAEIMRMTMIIGATTTGCSRLRPTLEKVGPRILIVEEAAEVLE 1243
Query: 392 PSILIPL-NKVERFVLAGDHKQLPPTILSLE---AQELSRTLFEGLIER-YPWKSEMLVV 446
I+ + + VE V+ GDHKQL P E A L ++FE L+ER P+ L
Sbjct: 1244 AHIISAMISTVEHVVMIGDHKQLRPNPAVHELGVAYGLRISMFERLVERGLPFSQ--LRQ 1301
Query: 447 QYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPE------NV 500
Q+RMN I+D+ V+ L Y + D+ L P+ N+
Sbjct: 1302 QHRMN--------------LTISDKIVK------LSFYDNVTDAENVGLYPDVQGMATNL 1341
Query: 501 IVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQRD 560
+ TS E+ E S N E + +V LL I V+ Y Q++
Sbjct: 1342 FFWSHTSMEESPDE------VSWLNKHEISMTVALVKHLLKQNYTTNDIVVLATYSAQKN 1395
Query: 561 LISMK-------VPED--VEVKTVDGYQGREKEVIILSLVRSNKLGE----IGFLKDLRR 607
L+ + P+ + V+TVD +QG+E++++I+SLVRS++ G IGFL R
Sbjct: 1396 LMYREYANVFGSTPDSNVIPVETVDSFQGKERKIVIVSLVRSHRGGRENTGIGFLAVANR 1455
Query: 608 LNVSLTRAKRKLIVVGDSS-TLSSHETYKKMI 638
+ V+LTRA+ + ++G+ + +++ E + K++
Sbjct: 1456 ICVALTRAQHGMYIIGNGAYIMNNSELWNKIV 1487
>pir||T23039 hypothetical protein H03G16.3 - Caenorhabditis elegans
>gi|3877990|emb|CAB07226.1| (Z92790) H03G16.3
[Caenorhabditis elegans]
Length = 646
Score = 81.1 bits (197), Expect = 3e-14
Identities = 89/323 (27%), Positives = 141/323 (43%), Gaps = 55/323 (17%)
Query: 353 DIIREADVVLTTNSSAALE-VVDYDTYDVA--IIDEATQSTIPSILIPLNKVERFVLAGD 409
D+I VVL T + L V + D + IIDEA + K + FV+AGD
Sbjct: 196 DMIGNVLVVLATIGADFLNFVAKQEALDPSFCIIDEAGLVMASETWPDVYKSKGFVIAGD 255
Query: 410 HKQLPPTILS-------------LEAQELSRTLFEGLIERYPWKSE-----MLVVQYRMN 451
+L P I + LE + L + +++ K+E +L QYR N
Sbjct: 256 PNELFPQIYNHDNGNGFFNQFCCLEQKRLETQV--SILDCINEKTENLSPIILDTQYRSN 313
Query: 452 ERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPE-NVIVFIDTSKAE 510
E IM + + FY K+ D +TLR + G NP + V +DTS E
Sbjct: 314 ETIMAWSNACFYNPKVKTDFKCGSLTLRSFFK--------GSKFNPLFHPFVIVDTS-CE 364
Query: 511 NKWERQRRG-----------SESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQR 559
+ E++ +E N EA+I +LL + V+ I +ITPY Q
Sbjct: 365 KEMEKRNETFEYLVFNNNNENEGYANVAEAKIAMHHYKQLLKLKVQASDIAIITPYRGQS 424
Query: 560 DLISMKVPE-----------DVEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRL 608
++ + + D V VD G+E +V+I ++VRSN ++G D RRL
Sbjct: 425 HVVRQMMRKFANEESRSDCFDTHVGDVDKIVGKEFDVVIFTMVRSNPKLDMGKAGDPRRL 484
Query: 609 NVSLTRAKRKLIVVGDSSTLSSH 631
+V +T+AK+ + +G+ L+ +
Sbjct: 485 HVIITKAKKHFMFIGNGFLLAEN 507
>gb|AAF54715.1| (AE003693) CG14730 gene product [Drosophila melanogaster]
Length = 1170
Score = 80.8 bits (196), Expect = 4e-14
Identities = 92/333 (27%), Positives = 158/333 (46%), Gaps = 50/333 (15%)
Query: 338 KAFDDARKLEERIARDIIREADVVLTTNSSAAL---EVVDYD-TYDVAIIDEATQSTIPS 393
+AF+ R +R +++EA ++ T + AAL E+V+ YD +++E+ Q
Sbjct: 712 RAFELLRTGLDRSKYLLVKEAKIIAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIE 771
Query: 394 ILIPL---------NKVERFVLAGDHKQLPPTILSLEAQELS---RTLFEGLIERYPWKS 441
IPL N+++R+++ GDH QLPP I ++ Q+ S ++LF L+ R +
Sbjct: 772 TFIPLLLQNPLDGLNRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLV-RLGVPT 830
Query: 442 EMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDSWGKILNPENVI 501
L Q R I Y + E ++ I RD EY+ N + NV
Sbjct: 831 VDLDGQGRARASIC-----SLYKWRYKKLEDLQHIFERD--EYKQANPGFVHDYQLINVE 883
Query: 502 VFIDTSKAE-NKWERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQ-- 558
F ++E N + Q N EAE + + + +G I ++T Y+ Q
Sbjct: 884 DFKGVGESEPNPYFYQ--------NLAEAEYIVAVYMYMRLLGYPAAKISILTTYNGQKH 935
Query: 559 --RDLISMKVPEDV------EVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNV 610
RD+I+ + + ++ TVD YQG++ + I++SLVR+ +G L+D+RRL V
Sbjct: 936 LIRDVINARCGNNPLIGWPHKITTVDKYQGQQNDYILISLVRTK---AVGHLRDVRRLVV 992
Query: 611 SLTRAKRKLIVVGDSS----TLSSHETYKKMIE 639
+++RA+ L V G S L +T+K + +
Sbjct: 993 AMSRARLGLYVFGRVSLFKNCLELQQTFKLLTQ 1025
>emb|CAB65628.1| (AL049766) dJ686N3.2 (novel protein similar to plant, yeast, worm,
bacterial and human (predicted) proteins) [Homo sapiens]
Length = 1814
Score = 78.4 bits (190), Expect = 2e-13
Identities = 46/134 (34%), Positives = 74/134 (54%), Gaps = 4/134 (2%)
Query: 514 ERQRRGSESRENPLEAEIVAKIVDKLLSIGVKPEWIGVITPYDDQ----RDLISMKVPED 569
E++ + +S +N EA V ++ L P I ++T Y Q R L+ K
Sbjct: 1015 EQEIQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAG 1074
Query: 570 VEVKTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLS 629
V V VD YQG E ++I+LSLVRSN+ G++GFL+ R+ V+L+RAK+ + +G+ L+
Sbjct: 1075 VRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLA 1134
Query: 630 SHETYKKMIEFFKE 643
+ K+I +E
Sbjct: 1135 KVPLWSKIIHTLRE 1148
>pir||T29386 hypothetical protein K08D10.5 - Caenorhabditis elegans
>gi|1280167|gb|AAA98031.1| (U55857) K08D10.5 gene
product [Caenorhabditis elegans]
Length = 602
Score = 76.9 bits (186), Expect = 7e-13
Identities = 86/345 (24%), Positives = 147/345 (41%), Gaps = 41/345 (11%)
Query: 325 EMAEWIKLNRQVQKA-----FDDARKLEERIARDIIREADVVLTTNSSAALEVVDY---- 375
E EWI + ++ KA F+ K E I R ++ D L ++AA+++
Sbjct: 250 EPNEWIVMAARLLKAAVKLPFNTIPK-EINIFRVFMKLYDPQLIIGTAAAIQLAFNQPDL 308
Query: 376 ----DTYDVAIIDEATQSTIPSI--LIPLNKVERFVLAGDHKQLPPTILSLEAQELSRTL 429
D +D+ IDEA+Q + + L L R +L GD QLPP EL R
Sbjct: 309 AEIKDLFDITFIDEASQLALYVLGSLATLLPKTRIILVGDMHQLPPYTEDALPAELKRAA 368
Query: 430 F-EGL---IERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIAD-ESVRGITLRDLVEY 484
E L ++ W S L +R + I + FYG + + ++V + + + +E
Sbjct: 369 VGEPLTLAVKGRRWSSMHLTRVHRCPKMITDLLGAVFYGNTLTSTRKAVNRVPILEAMEL 428
Query: 485 QSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVAKIVDKLLSIGV 544
S + VF+ N +Q + +S N EA ++V L
Sbjct: 429 PS-----------HHPFVFV------NYISQQTQVGKSFSNENEARYALQLVTALKRHAR 471
Query: 545 KPEW---IGVITPYDDQRDLISMKVPEDVEVKTVDGYQGREKEVIILSLVRSNKLGEIGF 601
+ + V+ Y Q + + V V T+DG QG+E +V I+ L RS+ + F
Sbjct: 472 EQNTTVSVAVLNFYGAQYSYVYSIAEDGVRVNTIDGCQGQEYDVSIVLLTRSDPYEKSKF 531
Query: 602 LKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFFKEKGC 646
L + R+NV+L+R+K +V+G + +H ++ ++ C
Sbjct: 532 LVNPNRINVALSRSKMATVVIGQRHLIGNHPNVQQAKRGRYQRSC 576
>sp|Q09449|YQ12_CAEEL HYPOTHETICAL 175.7 KD PROTEIN C05C10.2 IN CHROMOSOME II
>gi|7495408|pir||T18941 hypothetical protein C05C10.2 -
Caenorhabditis elegans >gi|3874068|emb|CAA88201.1|
(Z48178) similarity with yeast NAM7 protein (Swiss Prot
accession number P30771) and may possibly interact with
DNA or RNA~cDNA EST yk43d4.3 comes from this gene~cDNA
EST yk7f5.5 comes from this gene~cDNA EST yk68h2.5 comes
from this gene~cDNA EST yk13>
Length = 1551
Score = 72.6 bits (175), Expect = 1e-11
Identities = 81/298 (27%), Positives = 139/298 (46%), Gaps = 31/298 (10%)
Query: 360 VVLTTNSSAALEVVDYDTYDVAIIDEATQ---STIPSILIPLNKVERFVLAGDHKQLPPT 416
V++T +S+ L + D V I DEA+Q T+ +L N F L GD QLPP
Sbjct: 1186 VMVTADSAKGLLNILRDVCAVQI-DEASQLAECTLLGLLKSFNNAS-FGLIGDIHQLPPY 1243
Query: 417 ILSLEAQELSRTLFEGLIERYPWKSEMLVV-----QYRMNERIMEFPSKEFYGGKIIADE 471
+L +ER K +M V YR + + E S+ FY G +++
Sbjct: 1244 CEEGLEGKLKDFGIGNTMER-AIKEKMFPVCTLRNVYRCHPKTTELLSELFYDGALVS-- 1300
Query: 472 SVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEI 531
G++ ++ + D + NP+ ++F++ + A K S N E I
Sbjct: 1301 ---GVSELARSDFMTKRDDFWP--NPKFPMMFVNNTGASTKM------GTSTSNSSEKSI 1349
Query: 532 VAKIVDKLLSIG---VKPEWIGVITPYDDQRDLISMKVP-EDVEVKTVDGYQGREKEVII 587
V +IV L++ V P IGVI+ Y Q +++ + V+ TVD +QG EKE+II
Sbjct: 1350 VGEIVQNLINDPRNPVNPSDIGVISFYSAQTSILTEHLRGSGVKCGTVDAFQGSEKEIII 1409
Query: 588 LSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETYKKMIEFFKEKG 645
+ + ++ + F++ RLNV+++RAK+ I++G L + ++ ++ G
Sbjct: 1410 MCST-NERISD--FMQLSNRLNVAMSRAKQVTIIIGHLDGLRRANYWSTIVNKIEQNG 1464
>pir||T23869 hypothetical protein R03D7.2 - Caenorhabditis elegans
>gi|3878792|emb|CAA86856.1| (Z46828) similar to helicase
domain~cDNA EST yk138d12.5 comes from this gene~cDNA EST
yk138d12.3 comes from this gene [Caenorhabditis elegans]
Length = 542
Score = 72.2 bits (174), Expect = 2e-11
Identities = 73/275 (26%), Positives = 120/275 (43%), Gaps = 27/275 (9%)
Query: 358 ADVVLTTNSSAALEVVDYDTYDVAIIDEATQSTIPSI--LIPLNKVERFVLAGDHKQLPP 415
A + L + + LE+ D +D+ IDEA+Q + + L + R +L GD QLPP
Sbjct: 198 AAIKLAFSQAPFLEIKD--RFDITFIDEASQLALYVLGSLATMLPKSRMILVGDMHQLPP 255
Query: 416 TILSLEAQELSRTLF-EGL---IERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADE 471
+ EL R E L ++ W S L +R + I E FYG + + +
Sbjct: 256 YMEEALPAELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPKMITEVLGDLFYGNTLTSSK 315
Query: 472 SVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEI 531
G+T +++ L + +VF+ N Q +S N EA
Sbjct: 316 P--GVTDIPVLKAMG--------LPSRHPMVFV------NYTSPQTAVGKSFSNEGEARY 359
Query: 532 VAKIVDKLL---SIGVKPEWIGVITPYDDQRDLISMKVPEDVEVKTVDGYQGREKEVIIL 588
++V+ L S K ++ Y Q + ++V V T+DG QG+E +V I+
Sbjct: 360 ALQLVEALTRYASTANKKITAAILNFYGAQYSYVYSMAEDEVTVNTIDGCQGQEYDVTIV 419
Query: 589 SLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVG 623
L RS+ FL + R+NV+L+R K +++G
Sbjct: 420 LLTRSDPYERSKFLVNANRINVALSRPKIATVIIG 454
>pir||S75309 hypothetical protein sll1582 - Synechocystis sp. (strain PCC 6803)
>gi|1652300|dbj|BAA17223.1| (D90904) hypothetical protein
[Synechocystis sp.]
Length = 1118
Score = 71.8 bits (173), Expect = 2e-11
Identities = 87/319 (27%), Positives = 137/319 (42%), Gaps = 68/319 (21%)
Query: 378 YDVAIIDEATQST---IPSILIPLNKVERFVLAGDHKQLPPTILSLEAQ----------- 423
+D IIDEA+Q T + I++ NK FVL GD KQLP I E +
Sbjct: 806 FDQLIIDEASQLTEADLAGIVVLFNK---FVLIGDQKQLPAVITQNEEECRVEVEPFRRY 862
Query: 424 -----ELSRTLFEGLIERYPWKS-----EMLVVQYRMNERIMEFPSKEFYGGKIIADESV 473
+L +LFE LI K L YRM+ I + + + +
Sbjct: 863 AINISDLRISLFERLINNAKNKGWNHCYGQLTEHYRMHRDIASLIAHHYDRPLVEQTQEQ 922
Query: 474 RGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLEAEIVA 533
R I + + ND K+ + + E S R+N EA I A
Sbjct: 923 RKI---ESSYENNDNDLLSKLSKSRTIFI-----------ETPSETSIQRKNTNEAIIAA 968
Query: 534 KIV-----DKLLSIGVKPEWIGVITPYDDQRDLISMKVP----------EDVEVKTVDGY 578
IV +KLL + IG+I P+ Q I+ ++ + + V TV+ +
Sbjct: 969 TIVKTYWENKLLPMAE----IGIIAPFRAQVAEINQQLEKIFAGADFSRDSIVVDTVERF 1024
Query: 579 QGREKEVIILS--LVRSNKLGEIGFLKDL------RRLNVSLTRAKRKLIVVGDSSTLSS 630
QG E+E+II S + S ++ I + D R+L VS++RAK KL+++G+SS L
Sbjct: 1025 QGDERELIIFSTTISWSKQVKNIQSIADGDRQGTDRKLLVSISRAKSKLVILGNSSQLQF 1084
Query: 631 HETYKKMIEFFKEKGCFIE 649
Y+++I+ ++ I+
Sbjct: 1085 APAYRELIKHIEQSNGLID 1103
>dbj|BAB14299.1| (AK022902) unnamed protein product [Homo sapiens]
Length = 324
Score = 71.8 bits (173), Expect = 2e-11
Identities = 34/80 (42%), Positives = 57/80 (70%), Gaps = 1/80 (1%)
Query: 571 EVKTVDGYQGREKEVIILSLVRSNKL-GEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLS 629
EV TVD +QGR+K+ +I++ VR+N + G IGFL L+RLNV++TRAK L ++G TL
Sbjct: 17 EVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLM 76
Query: 630 SHETYKKMIEFFKEKGCFIE 649
++ + ++I+ +++G I+
Sbjct: 77 ENQHWNQLIQDAQKRGAIIK 96
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.137 0.381
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223438808
Number of Sequences: 2977
Number of extensions: 9185145
Number of successful extensions: 30231
Number of sequences better than 1.0e-10: 98
Number of HSP's better than 0.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 29766
Number of HSP's gapped (non-prelim): 166
length of query: 653
length of database: 189,106,746
effective HSP length: 61
effective length of query: 592
effective length of database: 152,599,039
effective search space: 90338631088
effective search space used: 90338631088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 168 (69.9 bits)