BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1562 (PAB1562) DE:Hypothetical protein
(405 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75105 hypothetical protein PAB1562 - Pyrococcus abyssi (st... 823 0.0
pir||B75201 hypothetical protein PAB0083 - Pyrococcus abyssi (st... 397 e-109
pir||A75137 hypothetical protein PAB0600 - Pyrococcus abyssi (st... 356 2e-97
pir||A71134 hypothetical protein PH0837 - Pyrococcus horikoshii ... 355 4e-97
gb|AAK41652.1| Conserved hypothetical protein [Sulfolobus solfat... 261 8e-69
pir||B75067 hypothetical protein PAB1355 - Pyrococcus abyssi (st... 241 1e-62
pir||D71082 hypothetical protein PH0922 - Pyrococcus horikoshii ... 228 1e-58
pir||D72356 conserved hypothetical protein - Thermotoga maritima... 139 5e-32
gb|AAK41775.1| Conserved hypothetical protein [Sulfolobus solfat... 102 7e-21
emb|CAC11862.1| (AL445065) conserved hypothetical protein [Therm... 71 2e-11
>pir||A75105 hypothetical protein PAB1562 - Pyrococcus abyssi (strain Orsay)
>gi|5458654|emb|CAB50142.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 405
Score = 823 bits (2103), Expect = 0.0
Identities = 405/405 (100%), Positives = 405/405 (100%)
Query: 1 MSLQYKYKIFINIFALKLHMLELQNPWWFSEPDRDWELFEKLTYKLRPKWLGELSLRPFS 60
MSLQYKYKIFINIFALKLHMLELQNPWWFSEPDRDWELFEKLTYKLRPKWLGELSLRPFS
Sbjct: 1 MSLQYKYKIFINIFALKLHMLELQNPWWFSEPDRDWELFEKLTYKLRPKWLGELSLRPFS 60
Query: 61 LNFVVGPRRVGKTLGIKLLIRELLKRVDTPYAIFYFSCDVLEDYRELLDILNDYLRLKKR 120
LNFVVGPRRVGKTLGIKLLIRELLKRVDTPYAIFYFSCDVLEDYRELLDILNDYLRLKKR
Sbjct: 61 LNFVVGPRRVGKTLGIKLLIRELLKRVDTPYAIFYFSCDVLEDYRELLDILNDYLRLKKR 120
Query: 121 KGVKSAFIFLDEVSLVDDWWRALKFLIDRGELKNDVVTVTGSISLTIGQHFETFGGRRGK 180
KGVKSAFIFLDEVSLVDDWWRALKFLIDRGELKNDVVTVTGSISLTIGQHFETFGGRRGK
Sbjct: 121 KGVKSAFIFLDEVSLVDDWWRALKFLIDRGELKNDVVTVTGSISLTIGQHFETFGGRRGK 180
Query: 181 GKTVKVMPLSFHEYYGLFYDEFFLSKGVEVFESYLETGGYLAYLNGILKVEELVGLLKAD 240
GKTVKVMPLSFHEYYGLFYDEFFLSKGVEVFESYLETGGYLAYLNGILKVEELVGLLKAD
Sbjct: 181 GKTVKVMPLSFHEYYGLFYDEFFLSKGVEVFESYLETGGYLAYLNGILKVEELVGLLKAD 240
Query: 241 LKALDRSTDLARDIMGAILDKAPSPTSFNAIAKVVGVSPHTVRDYVELFEAFHVLLQVLY 300
LKALDRSTDLARDIMGAILDKAPSPTSFNAIAKVVGVSPHTVRDYVELFEAFHVLLQVLY
Sbjct: 241 LKALDRSTDLARDIMGAILDKAPSPTSFNAIAKVVGVSPHTVRDYVELFEAFHVLLQVLY 300
Query: 301 LGGDGKIYPRKERKLILRDPLIVRAMELWTRRRIDRAVLYEWLVQEHLYRKFGEVFYYRN 360
LGGDGKIYPRKERKLILRDPLIVRAMELWTRRRIDRAVLYEWLVQEHLYRKFGEVFYYRN
Sbjct: 301 LGGDGKIYPRKERKLILRDPLIVRAMELWTRRRIDRAVLYEWLVQEHLYRKFGEVFYYRN 360
Query: 361 SYEVDAIAGNLKVEVKSGEKRRRYPRDVRVLNGFEVLEFLYSITQ 405
SYEVDAIAGNLKVEVKSGEKRRRYPRDVRVLNGFEVLEFLYSITQ
Sbjct: 361 SYEVDAIAGNLKVEVKSGEKRRRYPRDVRVLNGFEVLEFLYSITQ 405
>pir||B75201 hypothetical protein PAB0083 - Pyrococcus abyssi (strain Orsay)
>gi|5457566|emb|CAB49057.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 399
Score = 397 bits (1008), Expect = e-109
Identities = 190/390 (48%), Positives = 276/390 (70%), Gaps = 7/390 (1%)
Query: 21 LELQNPWWFSEPDRDWELFEKLTYKLRPKWLGELSLRPFSLNFVVGPRRVGKTLGIKLLI 80
LE NPWWF E D D E + L YK P W+ ELSL PFS+NF++GPRRVGKTLG+KLLI
Sbjct: 3 LEEYNPWWFHEEDPDIEEWNTLEYKYMPSWIRELSLEPFSVNFIIGPRRVGKTLGVKLLI 62
Query: 81 RELLK-RVDTPYAIFYFSCDVLEDYRELLDILNDYLRLKKRKGVKSAFIFLDEVSLVDDW 139
++LL+ R+ PY IFY+ C +L+D +LLD+L YL+LK+ K +KS+ IFLDEV+ V +W
Sbjct: 63 KQLLENRISNPYEIFYYDCTMLDDQNDLLDVLRAYLKLKESKRIKSSLIFLDEVTSVRNW 122
Query: 140 WRALKFLIDRGELKNDVVTVTGSISLTIGQHFETFGGRRGKGKTVKVMPLSFHEYYGLFY 199
W+ + LI+R +L+NDVV + GS+ + + + F GRRG GK +++MPL F +YY L +
Sbjct: 123 WKGIIDLINRKKLRNDVVVIMGSVLINLDRSIGHFAGRRGNGKILEIMPLGFRDYYQLIF 182
Query: 200 --DEFFLSKGVEVFESYLETGGYLAYLNGILKVEELVGLLKADLKALDRSTD--LARDIM 255
+E+F KG E FE YL+TGGY AYLN ++ ++VG LKADL++L+R D AR+I+
Sbjct: 183 GVEEYFERKGQEAFEMYLKTGGYAAYLNRRIRKSDIVGSLKADLRSLEREKDPETAREIL 242
Query: 256 GAILDKAPSPTSFNAIAKVVGVSPHTVRDYVELFEAFHVLLQVLYLGGDGKIYPRKERKL 315
GAI+ KAPSP S++ +A+ VG++ TVR Y+ + +LL++ + + K RK+
Sbjct: 243 GAIISKAPSPVSYSELARDVGINRDTVRSYISVLVELKILLEIPFSEHGKMVLQNKNRKI 302
Query: 316 ILRDPLIVRAMELWTRRRIDRAVLYEWLVQEHLYRKFGEVFYYRN-SYEVDAIAGNLKVE 374
+RDPL+ RA+ W + +++ +VLYEW+VQEHLYRKF E++Y+ + +YE+DA+ ++VE
Sbjct: 303 AIRDPLMARALAEWAKVKLEDSVLYEWVVQEHLYRKFREIYYFMSENYEIDAVVPGMRVE 362
Query: 375 VKSGEK-RRRYPRDVRVLNGFEVLEFLYSI 403
VKSG+ RRYP DV +L G +V FL++I
Sbjct: 363 VKSGKSLGRRYPSDVIILTGRDVPRFLHAI 392
>pir||A75137 hypothetical protein PAB0600 - Pyrococcus abyssi (strain Orsay)
>gi|5458321|emb|CAB49810.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 397
Score = 356 bits (905), Expect = 2e-97
Identities = 181/392 (46%), Positives = 260/392 (66%), Gaps = 7/392 (1%)
Query: 16 LKLHMLELQNPWWFSEPDRDWELFEKLTYKLRPKWLGELSLRPFSLNFVVGPRRVGKTLG 75
++L + NPWW + D + +++ +P+WL ELSL+PFSLNFV+GPR+VGKT G
Sbjct: 1 MRLGDIAYMNPWWEGKEDYHVKRWKEQKLHWKPRWLKELSLKPFSLNFVLGPRQVGKTTG 60
Query: 76 IKLLIRELLKRVDTPYAIFYFSCDVLEDYRELLDILNDYLRLKKRKGVKSAFIFLDEVSL 135
IKLLI+ELL+ + P I Y + +VL YRELL IL ++ LK R+G+K+ +IFLDEV+
Sbjct: 61 IKLLIQELLRN-NPPEGILYLNVEVLSSYRELLTILREFQELKVREGIKTGYIFLDEVTF 119
Query: 136 VDDWWRALKFLIDRGELKNDVVTVTGSISLTIGQHFETFGGRRGKGKTVKVMPLSFHEY- 194
++ WWR +K LID G L+NDV+T+TGS SL + + E F GRRG GKT++VMPLSF EY
Sbjct: 120 LEGWWRGVKPLIDAGLLENDVITITGSSSLKVKKDIELFPGRRGHGKTIEVMPLSFSEYI 179
Query: 195 --YGLFYDEFFLSKGVEVFESYLETGGYLAYLNGILKVEELVGLLKADLKALDRSTDLAR 252
G+ E K +++FE YL TGG+ +NG +E+L+G +L +S ++AR
Sbjct: 180 EIMGIKKPELHREKVLKLFEDYLTTGGFPPSING-FPMEDLLGAYIGELVRFGKSLEIAR 238
Query: 253 DIMGAILDKAPSPTSFNAIAKVV-GVSPHTVRDYVELFEAFHVLLQVLYLGGDGKIYPRK 311
+ AI+ +PS TSF A+A + G S ++DYVE F ++ L + YL +I R+
Sbjct: 239 ETFAAIIRSSPSATSFRALAGMTSGYSYKVIQDYVEFFTELYI-LGIAYLKQGNQIMYRR 297
Query: 312 ERKLILRDPLIVRAMELWTRRRIDRAVLYEWLVQEHLYRKFGEVFYYRNSYEVDAIAGNL 371
E+K RDPL+ + +W+ + LYEW+VQEH+YR+FGEV+YYRNSYEVD +A NL
Sbjct: 298 EKKFFFRDPLLAKLFAMWSGMELREDALYEWIVQEHVYRRFGEVYYYRNSYEVDVVAKNL 357
Query: 372 KVEVKSGEKRRRYPRDVRVLNGFEVLEFLYSI 403
++EVK+G+ RRYPR+V VL ++ FL +
Sbjct: 358 RIEVKAGKAHRRYPRNVIVLEREDIPFFLLEL 389
>pir||A71134 hypothetical protein PH0837 - Pyrococcus horikoshii
>gi|3257248|dbj|BAA29931.1| (AP000003) 396aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 396
Score = 355 bits (902), Expect = 4e-97
Identities = 177/392 (45%), Positives = 263/392 (66%), Gaps = 7/392 (1%)
Query: 16 LKLHMLELQNPWWFSEPDRDWELFEKLTYKLRPKWLGELSLRPFSLNFVVGPRRVGKTLG 75
+KL + NPWW + D + +EK PKW+ E+SL+PFSLNFV+GPR+VGKT G
Sbjct: 3 MKLDDITYMNPWWEGKEDYHVKQWEKQKVHWEPKWIREISLKPFSLNFVLGPRQVGKTTG 62
Query: 76 IKLLIRELLKRVDTPYAIFYFSCDVLEDYRELLDILNDYLRLKKRKGVKSAFIFLDEVSL 135
IKLLI+++L+ + P ++ Y + ++L YRELLDI+ ++ LKK +G+K+ +IFLDE S
Sbjct: 63 IKLLIQKILEE-NPPESVLYLNLEILPTYRELLDIIREFQELKKEEGIKTGYIFLDEASS 121
Query: 136 VDDWWRALKFLIDRGELKNDVVTVTGSISLTIGQHFETFGGRRGKGKTVKVMPLSFHEY- 194
++ WWR +K LID G L+NDV+TVTGS SL + + E F GRRG GKT++VMPLSF EY
Sbjct: 122 LEGWWRGVKPLIDSGLLENDVITVTGSSSLRVRRDIELFPGRRGGGKTLEVMPLSFPEYA 181
Query: 195 --YGLFYDEFFLSKGVEVFESYLETGGYLAYLNGILKVEELVGLLKADLKALDRSTDLAR 252
GL + SK +++FE Y++TGG+ +NG +E+L+G + +S ++A+
Sbjct: 182 RVMGLKKHKLEGSKVIKLFEKYIQTGGFPGSING-FPMEDLLGAYIGEFVRFGKSLEIAK 240
Query: 253 DIMGAILDKAPSPTSFNAIAKVV-GVSPHTVRDYVELFEAFHVLLQVLYLGGDGKIYPRK 311
+I A++ APS TSF A+A++ G S V+DY+E F ++ L + YL ++ R+
Sbjct: 241 EIFSALIRSAPSATSFRALAEMTSGYSYKVVQDYIEFFRDLYI-LGMAYLKQGNQVMYRR 299
Query: 312 ERKLILRDPLIVRAMELWTRRRIDRAVLYEWLVQEHLYRKFGEVFYYRNSYEVDAIAGNL 371
E+K RDPL+ + LW+ I + LYEW+VQEH++RKFGE+ Y+RNSYE+D IA ++
Sbjct: 300 EKKFFFRDPLLAKLFSLWSGTEIGKDALYEWIVQEHVFRKFGEIHYFRNSYEIDIIASDM 359
Query: 372 KVEVKSGEKRRRYPRDVRVLNGFEVLEFLYSI 403
K+EVK+G+ R+YPR V+VL +V FL +
Sbjct: 360 KIEVKAGKAHRKYPRGVKVLEKEDVPFFLIEL 391
>gb|AAK41652.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 409
Score = 261 bits (661), Expect = 8e-69
Identities = 150/381 (39%), Positives = 225/381 (58%), Gaps = 13/381 (3%)
Query: 24 QNPWW----FSEPDRDWELFEKLTYKLRPKWLGELSLRPFSLNFVVGPRRVGKTLGIKLL 79
+N WW + E D D + + +K PK + ++SL+PFSLNF+VGPR+VGKT IKLL
Sbjct: 3 ENIWWRGKDYIEEDEDIKKWNSAKFKWIPKEINKISLQPFSLNFIVGPRQVGKTTLIKLL 62
Query: 80 IRELLKRVDTPYAIFYFSCDVLEDYRELLDILNDYLRLKKRKGVKSAFIFLDEVSLVDDW 139
I++LL+ P +IFY SCD++ DY ELL DYL+++K++G+KS+FIFLDEV+ V +W
Sbjct: 63 IKKLLESNHNPLSIFYCSCDLVSDYEELLKRTRDYLKIRKQEGIKSSFIFLDEVTFVKEW 122
Query: 140 WRALKFLIDRGELKNDVVTVTGSISLTIGQHFETFGGRRGKGKTVKVMPLSFHEYYGLFY 199
+RA+K LID GEL +DVVTV+GS SLTI + E+F GRRG G V + PLSF Y +
Sbjct: 123 YRAVKHLIDTGELTSDVVTVSGSSSLTILKQKESFPGRRGNGTDVILYPLSFSGYINVIN 182
Query: 200 DEFFLSKG-----VEVFESYLETGGYLAYLNGILKVEELVGLLKADLKALDRSTDLARDI 254
+ + G E+FESYL+ GG +NG+ ++ + ++ + R LA+ I
Sbjct: 183 PKIEVRPGWYSEIEELFESYLKVGGLPPSINGLSPLKTYTEWIIYEINRVGRDEMLAKQI 242
Query: 255 MGAILDKAPSPTSFNAIAKVVGVSPHTVRDYVELFEAFHVLLQVLYLGGDGKIYP-RKER 313
+ A+L PS S+N+IAK +GV+ TV +Y++LF + L + ++ + Y RK+
Sbjct: 243 LSAVLSTTPSKVSYNSIAKEIGVNHRTVAEYIKLFNDMFLTLTLHFIDVNTGYYNYRKQI 302
Query: 314 KLILRDPLIVRAMELWTR-RRIDRAVLYEWLVQEHLYRKFGEVFYYRNSYEVDAIAGNLK 372
K+ DPL M WT +R D ++ E +V HL R + + E+D + L
Sbjct: 303 KIHFVDPLFYDVMSTWTGVKRPDDPIIVEGIVASHLSRIYSIGYTEVGKEEIDVV--TLP 360
Query: 373 VEVKSGEKRRRYPRDVRVLNG 393
+ K R + V+V+ G
Sbjct: 361 EVIGYEVKYRERTKQVKVIAG 381
>pir||B75067 hypothetical protein PAB1355 - Pyrococcus abyssi (strain Orsay)
>gi|5458944|emb|CAB50431.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 437
Score = 241 bits (608), Expect = 1e-62
Identities = 144/395 (36%), Positives = 220/395 (55%), Gaps = 40/395 (10%)
Query: 20 MLELQNPWW----FSEPDRDWELFEKLTYKLRPKWLGELSLRPFSLNFVVGPRRVGKTLG 75
M+E NPWW F D D+ +E+ K P+ + ++SL PFSLNF+ GPR+VGKT
Sbjct: 1 MIEQFNPWWKGKEFISEDEDYRKWEESGVKWVPRVIEDISLEPFSLNFIFGPRQVGKTTL 60
Query: 76 IKLLIRELLKRVDTPYAIFYFSCDVLEDYRELLDILNDYLRLKKRKGVKSAFIFLDEVSL 135
+KL+I+ LL P AIFY CD L DYREL++ L +Y+ L++ +G+++++IFLDE++
Sbjct: 61 LKLIIKRLLDSGVNPKAIFYLRCDYLSDYRELMNALEEYMELREIEGIENSYIFLDEITF 120
Query: 136 VDDWWRALKFLIDRGELKNDVVTVTGSISLTIGQHFETFGGRRGKGKTVKVMPLSFHEYY 195
+W+RA+K +D G+ KNDV+ +TGS+S+ + ETF GRRGKGK + + PLSF ++
Sbjct: 121 PREWFRAIKLYVDMGKFKNDVLILTGSVSMYLKGEIETFPGRRGKGKEIIMYPLSFRDFV 180
Query: 196 GLFYDEFF--------LSKGVE-------------VFESYLETGGYLAYLNGIL------ 228
G+ E + +SK E +F YL +GG+ + +L
Sbjct: 181 GVVAPELYRKIPVVREISKVRECLKLLPWKDELHRLFLLYLRSGGFPRAIKDVLGKGRVS 240
Query: 229 --KVEELVGLLKADLKALDRSTDLARDIMGAILDKAPSPTSFNAIAKVVGVSPH-TVRDY 285
+ + ++ D+ +S ++AR IM ILDK PSP +N IA+ + + H TV Y
Sbjct: 241 GDTYDTYLSWVRGDIIKFGKSEEVARMIMKTILDKVPSPIGWNTIAREIDIGSHKTVFSY 300
Query: 286 VELFEAFHVLLQVLYLGGDGKIYP--RKERKLILRDPLIVRAMELWTR-RRIDRAVLYEW 342
+E E +L+VL+ + P RKE+K+ L DP + W + + E
Sbjct: 301 IEFLEK-SFILKVLHYFDPNTLEPDFRKEKKVHLIDPFLYELFSRWCLVEKPSEDKIVES 359
Query: 343 LVQEHLYRKFGEVFYYRNSYEVDAIA-GNLKVEVK 376
+V HL RK+ EV Y+RN EVD + + EVK
Sbjct: 360 VVASHLARKY-EVGYWRNGKEVDVVTKSGIGFEVK 393
>pir||D71082 hypothetical protein PH0922 - Pyrococcus horikoshii
>gi|3257335|dbj|BAA30018.1| (AP000004) 435aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 435
Score = 228 bits (574), Expect = 1e-58
Identities = 132/394 (33%), Positives = 220/394 (55%), Gaps = 38/394 (9%)
Query: 20 MLELQNPWWFS----EPDRDWELFEKLTYKLRPKWLGELSLRPFSLNFVVGPRRVGKTLG 75
M+E NPWW E D D+ + + P+ + ++SL PFSLN + GPR+VGKT
Sbjct: 1 MIEHFNPWWKGREGIEEDEDYRKWIGSEVRWVPEVIKKISLEPFSLNIIFGPRQVGKTTL 60
Query: 76 IKLLIRELLKRVDTPYAIFYFSCDVLEDYRELLDILNDYLRLKKRKGVKSAFIFLDEVSL 135
+KL++++LL P +IFY CD + DY+EL++++++YL +K+ +G+KS++I LDEV+
Sbjct: 61 LKLIVKKLLDEGKNPRSIFYLRCDYISDYKELMNVIDEYLEIKETEGIKSSYILLDEVTF 120
Query: 136 VDDWWRALKFLIDRGELKNDVVTVTGSISLTIGQHFETFGGRRGKGKTVKVMPLSFHEYY 195
+W+RA+K ID G+ +NDV+ +TGS S+ ETF GRRGKGK ++PL+F E+
Sbjct: 121 PKEWFRAIKLYIDMGKFRNDVLILTGSTSMYTKGEVETFPGRRGKGKDAVMLPLTFREFI 180
Query: 196 GLFYDEF---------------------FLSKGVEVFESYLETGGYLAYLNGILK----- 229
+ + F+ + +F+ YL +GG+ + +LK
Sbjct: 181 KIASPKLHSVLPRINSLNKVEECLKAIPFIEELNSLFKLYLISGGFPRAVKDLLKHNKVS 240
Query: 230 ---VEELVGLLKADLKALDRSTDLARDIMGAILDKAPSPTSFNAIAKVVGVSPH-TVRDY 285
E + ++ D+ L +S ++AR IM I+ K PSP S++ IAK + + H TV Y
Sbjct: 241 EETYETYISWMRGDILKLGKSEEVARRIMKTIIKKLPSPVSWHGIAKEIDIGSHKTVFSY 300
Query: 286 VELFEAFHVLLQVLYLGGDG-KIYPRKERKLILRDPLIVRAMELWT-RRRIDRAVLYEWL 343
+ELFE ++ + Y+ D + ++E+K+ L DP + + WT + E +
Sbjct: 301 IELFERMFLIRVLPYIDPDKLEADFKREKKVHLIDPFLYHLVSRWTLTEEPSEDKIVESV 360
Query: 344 VQEHLYRKFGEVFYYRNSYEVDAIA-GNLKVEVK 376
V H+ R++ EV Y+R+ E+D + + +EVK
Sbjct: 361 VATHVARRY-EVGYWRDGREIDVVTREGVGIEVK 393
>pir||D72356 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981136|gb|AAD35701.1|AE001735_14 (AE001735)
conserved hypothetical protein [Thermotoga maritima]
Length = 463
Score = 139 bits (347), Expect = 5e-32
Identities = 100/366 (27%), Positives = 181/366 (49%), Gaps = 38/366 (10%)
Query: 21 LELQNPWW----FSEPDRDWELFEKLTYKLRPKWL-GELSLRPFSLNFVVGPRRVGKTLG 75
L + NPWW DR +FE T+K P+ L ++ L + + GPR+VGKT
Sbjct: 4 LYIMNPWWRDPEIINTDRHISMFENSTFKYFPENLFKKIPLNKPGIYTIRGPRQVGKTTF 63
Query: 76 IKLLIRELLKRVDTPYAIFYFSCDVLEDYRELLDILNDYLRLKKRKGVKSAFIFLDEVSL 135
+KL IR+LL+ P IF+F+CD ++D EL++ + Y ++ +RK ++ ++F+DE++
Sbjct: 64 LKLYIRKLLRDGVKPSNIFFFTCDAVKDRFELIETMKAYFQIFERKAGETRYLFIDEITA 123
Query: 136 VDDWWRALKFLIDRGELKNDVVTVTGSISLTIGQHFETFGGRRGKGKTVKVMPLSFHEYY 195
V+DW +++K+L+D G L+N ++ +TGS + + + E GR+G G+ + +PL+F E+
Sbjct: 124 VEDWQKSIKYLVDIGLLENSLLILTGSSAFDLKRSSERLPGRKGYGEDLVYLPLTFGEFL 183
Query: 196 --------GLFYDEFFLSKGVEV-------------FESYLETGGYLAYLNGIL---KVE 231
+ D+ FL E+ F YL TGG+ ++ L K++
Sbjct: 184 ESLGISVERMSVDDIFLKSEEELRILYLKNSFLKEYFVKYLNTGGFPKVIDVFLKEGKID 243
Query: 232 ELVGLLKADLKALDRSTDLAR-----DIMGAILDKAPSPTSFNAIAKVVG---VSPHTVR 283
E+ + D D L +I + D S+N++ + S T++
Sbjct: 244 EITKGVFRDFILGDAEKYLGSRIKVIEIFKKLPDIVGQRFSWNSLVDIFSGAIESVDTIQ 303
Query: 284 DYVELFEAFHVLLQVLYLGGDGK-IYPRKERKLILRDPLIVRAMELWTRRRIDRAVLYEW 342
Y E +L+ V ++ K + +K++K D ++V +E + ++I + E
Sbjct: 304 KYFEYLGYSFILMNVFFVDISRKTVRLKKQKKTYPIDRVVVDIIEEISGKQIKLPQIVEM 363
Query: 343 LVQEHL 348
L HL
Sbjct: 364 LTLRHL 369
>gb|AAK41775.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 287
Score = 102 bits (252), Expect = 7e-21
Identities = 74/224 (33%), Positives = 118/224 (52%), Gaps = 22/224 (9%)
Query: 11 INIFALKLHMLELQNPWWFSEPDRDWELFEKLTYKLRPKWLGELSLRPFSLN-FVVGPRR 69
+ I + + QNPWW D++ L ++ + R + + P + ++GPR+
Sbjct: 3 LTIVVSYISQMSFQNPWWV---DKNRILEDEHVKRAR------VIVPPIDESALILGPRQ 53
Query: 70 VGKTLGIKLLIRELLKRVDTPYAIFYFSCDVLEDYRELLDILNDYLRLKKRKGVKSAFIF 129
VGKT +K I+ LL+RVD+ +I +FSCD EL+ ++N+Y L R+ +SA+IF
Sbjct: 54 VGKTTYLKTTIKTLLERVDSR-SILFFSCDAFSKKEELIGLVNEYRTLVNRE--ESAYIF 110
Query: 130 LDEVSLVDDWWRALKFLIDRGELKNDVVTVTGSISLTIGQHFETFGGRRGKGKTVKVMPL 189
LDE++ V DW AL L + G N +V VTGS S+ + + E GR K PL
Sbjct: 111 LDEITSVSDWNTALLHLFNAGYFNNSLVYVTGSSSINLRK--EMLPGR--PIKKYVFYPL 166
Query: 190 SFHEYYGLFY-----DEFFLSKGVEVFESYLETGGYLAYLNGIL 228
+F Y+ FY D + + E++E+ L+ Y++ LN L
Sbjct: 167 NFRVYFDSFYKKLIQDHVKVDEKDELYENALKLLPYISELNKAL 210
>emb|CAC11862.1| (AL445065) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 441
Score = 71.0 bits (171), Expect = 2e-11
Identities = 99/387 (25%), Positives = 165/387 (42%), Gaps = 45/387 (11%)
Query: 20 MLELQNPWWFSEPDRD--WELFEKLTYKLRPKWLGELSLRPFSLNFVVGPRRVGKTLGIK 77
ML N WW + R F ++ Y + + + S+ F G RRVGKT +
Sbjct: 5 MLYRFNEWWITGTVRSDLTGRFRRMDYPALKRLIDDRSIVLF-----YGLRRVGKTTIMY 59
Query: 78 LLIRELLKRVDTPYAIFYFSCDVLEDYRELLDILNDYLRLKKRKGVKSA---FIFLDEVS 134
+I +LLK P I YFS D E ++ ++++ Y +K + A ++FLDEV
Sbjct: 60 QIISDLLKDGTEPERILYFSFD--ESSGDIDEMISLYAETVLKKPITEAPRIYMFLDEVQ 117
Query: 135 LVDDWWRALKFLIDRGELKNDVVTVTGSISLTIGQ-HFETFGGRRGKGKTVKVMPLSFHE 193
+DW +K D N ++GS SL + + ET GR VK+ PLSF E
Sbjct: 118 KAEDWENRIKIFYDL--YPNIKFVLSGSSSLNVLKGSSETLAGRI---VLVKIEPLSFSE 172
Query: 194 Y-----YGLFYDEFFLSKGV--EVFESYLETGGY--LAYLNGILKVEELVGLLKAD-LKA 243
+ + + Y++ ++ + + Y+E GG+ L + N K+ V + D +
Sbjct: 173 FCKLKGHEVPYEKVAYARDILSPMLMEYIEKGGFPELVWENDPYKIRSYVRSIVIDRIVT 232
Query: 244 LD-------RSTDLARDIMGAILDKAPSPTSFNAIAKVVGVSPHTVRDYVELFEAFHVLL 296
D R DL R +M IL + + I+ G + T+ +++ E ++
Sbjct: 233 RDIPQEFGIRDMDLMRRLMETILMNPGVILNLDKISSSFGRNRITISNFISYMEYAFLIR 292
Query: 297 QVLYLGGDGKIYPRKERKLILRDPLIVRAMELWTRRRIDRAVLYEWLVQEHLYRKFGEVF 356
V + RK +K+ P AM L + D L E + L +
Sbjct: 293 TVSNYRPGVEAASRKLKKVYPYTPAFYLAM-LAPQDAYDAGKLMENAMAAIL----SPGY 347
Query: 357 YYR-NSYEVDAIAGN----LKVEVKSG 378
Y+R + E+D + + + +EVKSG
Sbjct: 348 YFRAGNTEIDFVLDHGGVRIPIEVKSG 374
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.325 0.145 0.434
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151857546
Number of Sequences: 2977
Number of extensions: 6622193
Number of successful extensions: 19344
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19305
Number of HSP's gapped (non-prelim): 11
length of query: 405
length of database: 189,106,746
effective HSP length: 52
effective length of query: 353
effective length of database: 157,985,422
effective search space: 55768853966
effective search space used: 55768853966
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.5 bits)
S2: 166 (69.1 bits)