BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1564 (PAB1564) DE:TRANSMEMBRANE TRANSPORT PROTEIN
(503 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75104 transmembrane transport protein PAB1564 - Pyrococcus... 1037 0.0
pir||G71055 hypothetical protein PH1141 - Pyrococcus horikoshii ... 635 0.0
pir||E75085 transmembrane transport protein PAB1658 - Pyrococcus... 257 2e-67
pir||F71055 hypothetical protein PH1140 - Pyrococcus horikoshii ... 245 9e-64
>pir||D75104 transmembrane transport protein PAB1564 - Pyrococcus abyssi
(strain Orsay) >gi|5458649|emb|CAB50137.1| (AJ248286)
TRANSMEMBRANE TRANSPORT PROTEIN [Pyrococcus abyssi]
Length = 503
Score = 1037 bits (2651), Expect = 0.0
Identities = 503/503 (100%), Positives = 503/503 (100%)
Query: 1 MGRGKVELLWLLLIAFIVNFAVIYGRKMPVGANGGDTIIHMAMIRGIYLGRNPFLDQHYN 60
MGRGKVELLWLLLIAFIVNFAVIYGRKMPVGANGGDTIIHMAMIRGIYLGRNPFLDQHYN
Sbjct: 1 MGRGKVELLWLLLIAFIVNFAVIYGRKMPVGANGGDTIIHMAMIRGIYLGRNPFLDQHYN 60
Query: 61 VPPNWYPFLYHSLIAILAKFTSIPIWTLMIWTPLIFSIIMVFAWYKLGRELNEKYGGLLL 120
VPPNWYPFLYHSLIAILAKFTSIPIWTLMIWTPLIFSIIMVFAWYKLGRELNEKYGGLLL
Sbjct: 61 VPPNWYPFLYHSLIAILAKFTSIPIWTLMIWTPLIFSIIMVFAWYKLGRELNEKYGGLLL 120
Query: 121 GSLSFLIMKSQLFPNPKALIPIFLSASYLAFLRYYRDWKKKHLGYAGLFLGLMMWTHYGV 180
GSLSFLIMKSQLFPNPKALIPIFLSASYLAFLRYYRDWKKKHLGYAGLFLGLMMWTHYGV
Sbjct: 121 GSLSFLIMKSQLFPNPKALIPIFLSASYLAFLRYYRDWKKKHLGYAGLFLGLMMWTHYGV 180
Query: 181 ALPVLIAILLYSLFKFKEEKSLVLVPIIALVIFSPFIINVIANIEDGASLMVEGWNVASL 240
ALPVLIAILLYSLFKFKEEKSLVLVPIIALVIFSPFIINVIANIEDGASLMVEGWNVASL
Sbjct: 181 ALPVLIAILLYSLFKFKEEKSLVLVPIIALVIFSPFIINVIANIEDGASLMVEGWNVASL 240
Query: 241 SLSNTIRRIFPPVWGAILILLSLLYMNKAQDRIFWNFVLFVVIGIIGVNLLPSILFITTG 300
SLSNTIRRIFPPVWGAILILLSLLYMNKAQDRIFWNFVLFVVIGIIGVNLLPSILFITTG
Sbjct: 241 SLSNTIRRIFPPVWGAILILLSLLYMNKAQDRIFWNFVLFVVIGIIGVNLLPSILFITTG 300
Query: 301 IEIFPSRFAISLHYTYLLLYLCAILGLVESKYIRGNKKLVTYLISLIFLVYGSLSFVHYN 360
IEIFPSRFAISLHYTYLLLYLCAILGLVESKYIRGNKKLVTYLISLIFLVYGSLSFVHYN
Sbjct: 301 IEIFPSRFAISLHYTYLLLYLCAILGLVESKYIRGNKKLVTYLISLIFLVYGSLSFVHYN 360
Query: 361 FHNPSAPPFLPNYTYVEFEDLAGNYTRGLLIISSWIRNNTGRDDCLIGYPYTLEWIAGFT 420
FHNPSAPPFLPNYTYVEFEDLAGNYTRGLLIISSWIRNNTGRDDCLIGYPYTLEWIAGFT
Sbjct: 361 FHNPSAPPFLPNYTYVEFEDLAGNYTRGLLIISSWIRNNTGRDDCLIGYPYTLEWIAGFT 420
Query: 421 GRPVVAVSYGHGNPFLNMRQRRHDIKEFFRDPSKRTAIAEKYGVKYVILDPYAREYYNVT 480
GRPVVAVSYGHGNPFLNMRQRRHDIKEFFRDPSKRTAIAEKYGVKYVILDPYAREYYNVT
Sbjct: 421 GRPVVAVSYGHGNPFLNMRQRRHDIKEFFRDPSKRTAIAEKYGVKYVILDPYAREYYNVT 480
Query: 481 VANFSDNFRVAFHWWEFYILEVS 503
VANFSDNFRVAFHWWEFYILEVS
Sbjct: 481 VANFSDNFRVAFHWWEFYILEVS 503
>pir||G71055 hypothetical protein PH1141 - Pyrococcus horikoshii
>gi|3257558|dbj|BAA30241.1| (AP000005) 502aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 502
Score = 635 bits (1619), Expect = 0.0
Identities = 300/501 (59%), Positives = 381/501 (75%), Gaps = 7/501 (1%)
Query: 1 MGRGKVELLWLLLIAFIVNFAVIYGRKMPVGANGGDTIIHMAMIRGIYLGRNPFLDQHYN 60
M R K +LLWLL IAFIVNF+VIYGRKMPVG NGGDTIIHMAMIRGIYLGRNPFLDQHYN
Sbjct: 5 MKRKKAQLLWLLFIAFIVNFSVIYGRKMPVGGNGGDTIIHMAMIRGIYLGRNPFLDQHYN 64
Query: 61 VPPNWYPFLYHSLIAILAKFTSIPIWTLMIWTPLIFSIIMVFAWYKLGRELNEKYGGLLL 120
VPPNWYPFLYH+LIA LA+ T I IW+LMIWTPLIF++IMVFAWYKLG EL++ YGGLL
Sbjct: 65 VPPNWYPFLYHALIAFLARLTHISIWSLMIWTPLIFALIMVFAWYKLGEELDKDYGGLLF 124
Query: 121 GSLSFLIMKSQLFPNPKALIPIFLSASYLAFLRYYRDWKKKHLGYAGLFLGLMMWTHYGV 180
GSL+FL +KSQLFPNPK LIPIFL YL + RY+RD + +HL Y+GL LGLMMW+HYG
Sbjct: 125 GSLAFLALKSQLFPNPKELIPIFLPLFYLEYYRYFRDRENRHLLYSGLLLGLMMWSHYGA 184
Query: 181 ALPVLIAILLYSLFKFKEEKSLVLVPIIALVIFSPFIINVIANIEDGASLMVEGWNVASL 240
ALPVL + Y+L + K L++ P ++L +FSPFI+NV+ +I G++++VEG +++L
Sbjct: 185 ALPVLAGTIAYALIELKRNPKLMIPPFLSLAVFSPFIVNVLLHIHPGSTMIVEGKWLSAL 244
Query: 241 SLSNTIRRIFPPVWGAILILLSLLYMNKAQDRIFWNFVLFVVIGIIGVNLLPSILFITTG 300
S S+ + RI P W ++ ++ L + K ++ FWNF++ V+I +IG+N+ P+I++ G
Sbjct: 245 SWSSALHRIASPSWTLPIVTIAFLSLRK-RNLEFWNFLIVVIISMIGINVTPTIVYDLGG 303
Query: 301 IEIFPSRFAISLHYTYLLLYLCAILGLVESKYIRGNKKLVTYLISLIFLVYGSLSFVHYN 360
+FPSRF I L YTYL+L I L+++ I K++++ S + ++YGS SF+ N
Sbjct: 304 PAVFPSRFGIPLSYTYLILCGFGIDFLIKALKI-PRKQILSLTFSFLLIIYGSWSFIACN 362
Query: 361 FHNPSAPPFLPNYTYVEFEDLAGNYTRGLLIISSWIRNNTGRDDCLIGYPYTLEWIAGFT 420
+HN F YTY FEDLAGNYT+GL+ +S WIR NT RD LIGYPYTLEWIAGFT
Sbjct: 363 YHN-----FSSKYTYKNFEDLAGNYTKGLVKVSEWIRENTERDAYLIGYPYTLEWIAGFT 417
Query: 421 GRPVVAVSYGHGNPFLNMRQRRHDIKEFFRDPSKRTAIAEKYGVKYVILDPYAREYYNVT 480
GRPVVAVSYGHGNPFL+M QRR DI+EFF +P KR I +KY +KY+ILDPY + +NVT
Sbjct: 418 GRPVVAVSYGHGNPFLDMEQRRKDIEEFFTNPEKREEIIKKYNIKYIILDPYTKRSFNVT 477
Query: 481 VANFSDNFRVAFHWWEFYILE 501
+ +F DNFR+ F W EFYILE
Sbjct: 478 IDDFGDNFRIVFQWGEFYILE 498
>pir||E75085 transmembrane transport protein PAB1658 - Pyrococcus abyssi
(strain Orsay) >gi|5458498|emb|CAB49986.1| (AJ248286)
TRANSMEMBRANE TRANSPORT PROTEIN [Pyrococcus abyssi]
Length = 470
Score = 257 bits (651), Expect = 2e-67
Identities = 174/473 (36%), Positives = 256/473 (53%), Gaps = 47/473 (9%)
Query: 9 LWLLLIAFIVNFAVIYGRKMPVG-ANGGDTIIHMAMIRGIYLGRNPFLDQHYNVPPNWYP 67
L+L++ ++ + RK P G GGDT++H A+ RGIYLGRNPFLDQ YNVPPNWYP
Sbjct: 7 LFLIISWALIFLPYVLTRKSPPGYIIGGDTLVHAAIARGIYLGRNPFLDQTYNVPPNWYP 66
Query: 68 FLYHSLIAILAKFTSIPIWTLMIWTPLIFSIIMVFAWYKLGRELNEKYGGLLLGSLSFLI 127
FLYH ++AI AK I LM+ +FS++M+ Y + + L + G+ + SLS L+
Sbjct: 67 FLYHLIVAIFAKIVGIEKSMLML--QAVFSLLMLLIMYWIAKNLWGETAGIFVLSLSLLL 124
Query: 128 MKSQLFPNPKALIPIFLSASYLAFLRYYRDWKKKHLGYAGLFLGLMMWTHYGVALPVLIA 187
+ + +PNPK L PI S LR +K +LG GLF GL +WTHY VA P++
Sbjct: 125 LPAHRYPNPKELAPILGMISLYFSLR-----RKYYLG--GLFAGLSLWTHYAVAAPLITF 177
Query: 188 ILLYSLFKFKEEKSLVLVPIIALVIFSPFIINVIANIEDGASLMVEGWNVASLSLSNTIR 247
L+ ++ K SL L AL+ FSPFI+NVI + + L+ ++ +++T+
Sbjct: 178 FLVLAIKNRKYMISLAL----ALLTFSPFIVNVILHAQ---FLLPHVEDIYRFWITDTLE 230
Query: 248 R----IFPPVWGAILILLSLLYMNKAQDRIFWNFVLFVVIGIIGVNLLPSILFITTGIEI 303
R + PP++ LI L+LL M K +D LF+ I I G+ L P IL GI++
Sbjct: 231 RKLSSLLPPLYLIPLIFLALLRMYKEKDENAMKLFLFISI-IAGMRLFPEIL-KPFGIDL 288
Query: 304 FPSRFAISLHYTYLLLYLCAILGLVESKYIRGNKKLVTYLISLIFLVYGSLSFVHYNFHN 363
+ SRF L Y+Y+LL + L N +++ + + V+ SL+F + ++
Sbjct: 289 WSSRFIGLLPYSYVLLASYGVRSL--------NGEILNVMALTLIPVFASLNFWYSVIND 340
Query: 364 P----SAPPFLPNYTYVEFEDLAGNYTRGLLIISSWIRNNTGRDDCLIGYPYTLEWIAGF 419
P S+ + F D+A WI NT RDD + I
Sbjct: 341 PFIQASSVELNEYFPQEHFVDVA-----------EWIVKNTARDDVIGAGEEMGMMINAL 389
Query: 420 TGRPVVAVSYGHGNPFLNMRQRRHDIK-EFFRDPSKRTAIAEKYGVKYVILDP 471
TGRP++A YGHGN FLN +RRH++K F + S++ + +KY VKYVI+DP
Sbjct: 390 TGRPIIATMYGHGNIFLNNTERRHELKLLFLGNCSEKIIVLQKYRVKYVIVDP 442
>pir||F71055 hypothetical protein PH1140 - Pyrococcus horikoshii
>gi|3257557|dbj|BAA30240.1| (AP000005) 507aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 507
Score = 245 bits (619), Expect = 9e-64
Identities = 164/460 (35%), Positives = 248/460 (53%), Gaps = 46/460 (10%)
Query: 23 IYGRKMPVG-ANGGDTIIHMAMIRGIYLGRNPFLDQHYNVPPNWYPFLYHSLIAILAKFT 81
I RK P G GGDT++H A+ RGI LGRNPFLDQ YNVPPNWYPFLYH ++A +AK
Sbjct: 21 IITRKSPPGYIIGGDTLVHAAIARGILLGRNPFLDQTYNVPPNWYPFLYHMIVAGVAKGF 80
Query: 82 SIPIWTLMIWTPLIFSIIMVFAWYKLGRELNEKYGGLLLGSLSFLIMKSQLFPNPKALIP 141
SI I M+ LI S++M+ + +L + ++ +LS L++ +PNPK L P
Sbjct: 81 SISIEKSMLVLQLILSLLMILVMSLVAGKLWGEEAEIVSMALSLLMLPYHRYPNPKELAP 140
Query: 142 IF--LSASYLAFLRYYRDWKKKHLGYAGLFLGLMMWTHYGVALPVLIAILLYSLFKFKEE 199
IF +S YL+ RY +G+ +GL +WTHY VA P+L+ L L ++
Sbjct: 141 IFGIISLFYLSRRRYI---------MSGILVGLALWTHYAVAFPLLLFFLTLGL----KD 187
Query: 200 KSLVLVPIIALVIFSPFIINVIANIEDGASLMVEGWNVASLSLSNTIRR----IFPPVWG 255
+ +L II+L+IFSPF++N++ + E L + ++ + +++T++R + PPV+
Sbjct: 188 RRYILSLIISLIIFSPFVVNILLHSE---FLFPQVEDIYAFWVNDTVKRKLLSVLPPVYL 244
Query: 256 AILILLSLLYMNKAQDRIFWNFVLFVVIGIIGVNLLPSILFITTGIEIFPSRFAISLHYT 315
A L+ L+ + K ++R + FV + II L P L GI+++ SRF L Y
Sbjct: 245 APLVALAGIKGYKRREREVLLLIAFVFV-IIIARLSPETL-KPFGIKLWSSRFTYLLPYV 302
Query: 316 YLLLYLCAILGLVESKYIRGNKKLVTYLISLIFLVYGSLSFVHYNFHNPSA---PPFLPN 372
Y+LL +L +SK K ++ +LI ++ +V S S F S + P
Sbjct: 303 YVLLSAYGMLNFAKSKL---GKFILFFLIPILAVVNFSASIAEDPFLKVSTLDLKEYFPQ 359
Query: 373 YTYVEFEDLAGNYTRGLLIISSWIRNNTGRDDCLIGYPYTLEWIAGFTGRPVVAVSYGHG 432
+VE ++ W++ N RDD + I TGRPVVA YGHG
Sbjct: 360 EHFVE--------------VAEWVKKNIERDDTIAAGEEMSMMINALTGRPVVATMYGHG 405
Query: 433 NPFLNMRQRRHDIK-EFFRDPSKRTAIAEKYGVKYVILDP 471
N FLN +RR D++ F + +++ I KY V+Y+ILDP
Sbjct: 406 NTFLNNTRRRKDLEILFLGNCNEKKGIVRKYKVRYIILDP 445
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.329 0.147 0.467
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202578504
Number of Sequences: 2977
Number of extensions: 9128536
Number of successful extensions: 27919
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27896
Number of HSP's gapped (non-prelim): 4
length of query: 503
length of database: 189,106,746
effective HSP length: 49
effective length of query: 454
effective length of database: 159,780,883
effective search space: 72540520882
effective search space used: 72540520882
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 167 (69.5 bits)