BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1565 1184178 1183852 -109 !not a gene!
         (109 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75066 hypothetical protein PAB1360 - Pyrococcus abyssi (st...   113  6e-25

>pir||A75066 hypothetical protein PAB1360 - Pyrococcus abyssi (strain Orsay)
           >gi|5458935|emb|CAB50422.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 111
           
 Score =  113 bits (280), Expect = 6e-25
 Identities = 54/108 (50%), Positives = 73/108 (67%)

Query: 2   VNLDELKANAQEYLEDADYLYNKGHYNSALNLYFKALVAICDYIILRDTGKLPRNHSERF 61
           +NLD+L+AN  EY+E  +  + +G YNSAL +YFKALV ICDYII ++    P+NH ERF
Sbjct: 3   INLDDLRANIDEYIEVDEMAFKRGKYNSALIMYFKALVGICDYIIKKELNLEPKNHGERF 62

Query: 62  RILKEKYPEIYDIVDFHFNNYRKAYLMRVTKEWVEVLKNDVHNLYSQL 109
            IL+  YP++Y  VD  FN YR AY  R+TK  V  L+N+V  L  ++
Sbjct: 63  SILRRYYPDLYRTVDKFFNFYRDAYERRITKREVGELRNEVLRLTDRI 110


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.140    0.415 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43005965
Number of Sequences: 2977
Number of extensions: 1669737
Number of successful extensions: 4655
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4654
Number of HSP's gapped (non-prelim): 1
length of query: 109
length of database: 189,106,746
effective HSP length: 50
effective length of query: 59
effective length of database: 159,182,396
effective search space: 9391761364
effective search space used: 9391761364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 160 (66.7 bits)