BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1566 (PAB1566) DE:Hypothetical protein
         (214 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75104 hypothetical protein PAB1566 - Pyrococcus abyssi (st...   430  e-120
pir||H75065 hypothetical protein PAB1361 - Pyrococcus abyssi (st...   190  1e-47

>pir||C75104 hypothetical protein PAB1566 - Pyrococcus abyssi (strain Orsay)
           >gi|5458648|emb|CAB50136.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 214
           
 Score =  430 bits (1095), Expect = e-120
 Identities = 214/214 (100%), Positives = 214/214 (100%)

Query: 1   MTSTISTLSSKPLQFFTPPETLHETAKRFVKNHKEVFDVVLYGSTVLGKEKPNDLDLMIL 60
           MTSTISTLSSKPLQFFTPPETLHETAKRFVKNHKEVFDVVLYGSTVLGKEKPNDLDLMIL
Sbjct: 1   MTSTISTLSSKPLQFFTPPETLHETAKRFVKNHKEVFDVVLYGSTVLGKEKPNDLDLMIL 60

Query: 61  TRTKLPTLELRNLILELKRTLSKTLPRAKLDIRAMSLEELFDPNNLASLGVIIEGVSLTR 120
           TRTKLPTLELRNLILELKRTLSKTLPRAKLDIRAMSLEELFDPNNLASLGVIIEGVSLTR
Sbjct: 61  TRTKLPTLELRNLILELKRTLSKTLPRAKLDIRAMSLEELFDPNNLASLGVIIEGVSLTR 120

Query: 121 NKPMAELMNGKAYTLFRFTLEGLPRKDRVRFQYALKGRDMKSGLLKELNGEQWGAWVVVV 180
           NKPMAELMNGKAYTLFRFTLEGLPRKDRVRFQYALKGRDMKSGLLKELNGEQWGAWVVVV
Sbjct: 121 NKPMAELMNGKAYTLFRFTLEGLPRKDRVRFQYALKGRDMKSGLLKELNGEQWGAWVVVV 180

Query: 181 PVEHTYRFKDFLELWGVKYEAFTILKGADLFYRM 214
           PVEHTYRFKDFLELWGVKYEAFTILKGADLFYRM
Sbjct: 181 PVEHTYRFKDFLELWGVKYEAFTILKGADLFYRM 214


>pir||H75065 hypothetical protein PAB1361 - Pyrococcus abyssi (strain Orsay)
           >gi|5458934|emb|CAB50421.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 207
           
 Score =  190 bits (477), Expect = 1e-47
 Identities = 89/177 (50%), Positives = 125/177 (70%)

Query: 26  AKRFVKNHKEVFDVVLYGSTVLGKEKPNDLDLMILTRTKLPTLELRNLILELKRTLSKTL 85
           A+ F + +KEVFD+V+YGST+LGKE PND D M++ +    T          +R L    
Sbjct: 17  ARAFKREYKEVFDIVIYGSTMLGKENPNDFDFMVILKRGKETDRFEIAFEFKQRLLDLGF 76

Query: 86  PRAKLDIRAMSLEELFDPNNLASLGVIIEGVSLTRNKPMAELMNGKAYTLFRFTLEGLPR 145
           P  KLD++A++LE+LFDPN LA+ G+I+ G SLT+ KP+ ELMNG+ Y+LF+  + GL R
Sbjct: 77  PHEKLDVKAIALEDLFDPNYLATPGIIVGGFSLTKEKPIHELMNGEGYSLFKIIVSGLSR 136

Query: 146 KDRVRFQYALKGRDMKSGLLKELNGEQWGAWVVVVPVEHTYRFKDFLELWGVKYEAF 202
            +R +F +ALKGRD +SG+LK+L G     WVV++PVE+TYRFK+FL+ W VKYE +
Sbjct: 137 NERNKFSFALKGRDGRSGILKDLGGIFLAPWVVLIPVENTYRFKEFLDHWKVKYEVY 193


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.139    0.401 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77577611
Number of Sequences: 2977
Number of extensions: 3075390
Number of successful extensions: 6516
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6513
Number of HSP's gapped (non-prelim): 2
length of query: 214
length of database: 189,106,746
effective HSP length: 54
effective length of query: 160
effective length of database: 156,788,448
effective search space: 25086151680
effective search space used: 25086151680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)